Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 160 of 325
Found at i:50671309 original size:54 final size:54
Alignment explanation
Indices: 50671234--50671367 Score: 141
Period size: 54 Copynumber: 2.5 Consensus size: 54
50671224 CCTTGTAAGG
* * * **
50671234 TAAAATAACTGTTTTTCCCTTATGTGATAAAA-AGAC-GATTTTG-CCTTTATGTGGA
1 TAAAATGACTATTTTACCCTTATGTGATAAAATA-ACAG-TTTTGTCC-TTATG-AAA
*
50671289 -AAAATGACTATTTTACCCTTATGTGTTAAAATAACAGTTTTGTCCTTATGAAA
1 TAAAATGACTATTTTACCCTTATGTGATAAAATAACAGTTTTGTCCTTATGAAA
*
50671342 TAAAATGACTATTTTGCCCTTATGTG
1 TAAAATGACTATTTTACCCTTATGTG
50671368 GTAGGATGAC
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
53 1 0.01
54 63 0.93
55 4 0.06
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.40
Consensus pattern (54 bp):
TAAAATGACTATTTTACCCTTATGTGATAAAATAACAGTTTTGTCCTTATGAAA
Found at i:50671377 original size:81 final size:81
Alignment explanation
Indices: 50671234--50671394 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 81
50671224 CCTTGTAAGG
* ** *
50671234 TAAAATAACTGTTTTTCCCTTATGTGATAAAAAGACGATTTTGCCTTTATGTGGAAAAATGACTA
1 TAAAATAACAGTTTTTCCCTTATGAAATAAAAAGACGATTTTGCCCTTATGTGGAAAAATGACTA
*
50671299 TTTTACCCTTATGTGT
66 TTTTACCCCTATGTGT
* * * **
50671315 TAAAATAACAGTTTTGT-CCTTATGAAATAAAATGACTATTTTGCCCTTATGTGGTAGGATGACT
1 TAAAATAACAGTTTT-TCCCTTATGAAATAAAAAGACGATTTTGCCCTTATGTGGAAAAATGACT
* *
50671379 GTTTTGCCCCTATGTG
65 ATTTTACCCCTATGTG
50671395 ATGTATGTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 66 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (81 bp):
TAAAATAACAGTTTTTCCCTTATGAAATAAAAAGACGATTTTGCCCTTATGTGGAAAAATGACTA
TTTTACCCCTATGTGT
Found at i:50679210 original size:20 final size:20
Alignment explanation
Indices: 50679185--50679229 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
50679175 ATGGACTAAA
* *
50679185 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
50679205 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
50679225 ATGAA
1 ATGAA
50679230 TACGTGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:50686190 original size:40 final size:40
Alignment explanation
Indices: 50686134--50686417 Score: 446
Period size: 40 Copynumber: 7.1 Consensus size: 40
50686124 TGGGATTTAA
* *
50686134 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGC
50686174 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
*
50686214 TCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
50686254 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
50686294 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* *
50686334 CCGGATATAGTAACTCTCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* * * * *
50686374 CCAGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACGAATGCCTTCGGGACTTAGC
50686414 CCGG
1 CCGG
50686418 TTATCATCCA
Statistics
Matches: 230, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 228 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
Found at i:50694321 original size:40 final size:41
Alignment explanation
Indices: 50694270--50694374 Score: 113
Period size: 41 Copynumber: 2.6 Consensus size: 41
50694260 GGATATAGCT
* * *
50694270 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGGATTAGT-A
1 ACTCGCACGAATGCCTTCGGGACATAGCCCGGAACTAGTCA
* * *
50694310 ACTCGCACGAATTGCCTTCGGGACTTAGGCCGGAACTAGTCC
1 ACTCGCACGAA-TGCCTTCGGGACATAGCCCGGAACTAGTCA
* * *
50694352 ACTAGCGCAAATGCCTTCGGGAC
1 ACTCGCACGAATGCCTTCGGGAC
50694375 TGTGCCCGGT
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
40 10 0.19
41 36 0.67
42 8 0.15
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (41 bp):
ACTCGCACGAATGCCTTCGGGACATAGCCCGGAACTAGTCA
Found at i:50706351 original size:38 final size:39
Alignment explanation
Indices: 50706284--50706571 Score: 321
Period size: 39 Copynumber: 7.1 Consensus size: 39
50706274 ATTATATTAT
* *
50706284 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
50706323 CAGCACGAAGCCTG-GGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
50706361 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATCACTTTCC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATA-CA-TTT-C
* * * *** *
50706403 CGGATACATTTC-CAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTTC
1 C--A-GCA---CGAAGC-C--TG-C-G-GGACTTTAGCCCGGATACATTTC
*
50706453 CAGCACGAAGCCTGCGGGACTTT-GCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
50706491 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
50706530 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
50706569 CAG
1 CAG
50706572 TGTCTTGCAT
Statistics
Matches: 212, Mismatches: 19, Indels: 36
0.79 0.07 0.13
Matches are distributed among these distances:
38 73 0.34
39 90 0.42
40 3 0.01
41 4 0.02
42 3 0.01
44 3 0.01
45 5 0.02
47 5 0.02
48 3 0.01
50 3 0.01
51 4 0.02
52 3 0.01
53 13 0.06
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:50706424 original size:54 final size:51
Alignment explanation
Indices: 50706347--50706453 Score: 187
Period size: 54 Copynumber: 2.0 Consensus size: 51
50706337 GGGACTTTGG
50706347 CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATATCACTTT
1 CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT-GCCCGGATA-CA-TTT
50706401 CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTT
1 CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTT
50706452 CC
1 CC
50706454 AGCACGAAGC
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
51 5 0.09
52 2 0.04
53 9 0.17
54 37 0.70
ACGTcount: A:0.21, C:0.33, G:0.22, T:0.23
Consensus pattern (51 bp):
CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTT
Found at i:50706466 original size:92 final size:91
Alignment explanation
Indices: 50706309--50706485 Score: 329
Period size: 92 Copynumber: 1.9 Consensus size: 91
50706299 GGGACTTTAA
50706309 CCCGGATACATTTCCAGCACGAAGCCTGGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCT
1 CCCGGATACATTTCCAGCACGAAGCCTGGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCT
50706374 GCGGGACTTTAGCCCGGATATCACTTT
66 GCGGGACTTT-GCCCGGATATCACTTT
50706401 CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT-GCCCGGATACATTTCCAGCACGAAGCC
1 CCCGGATACATTTCCAGCACGAAGCCTG-GGGACTTTGGCCCGGATACATTTCCAGCACGAAGCC
50706465 TGCGGGACTTTGCCCGGATAT
65 TGCGGGACTTTGCCCGGATAT
50706486 ATTTCCAGCA
Statistics
Matches: 84, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
91 10 0.12
92 66 0.79
93 8 0.10
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.22
Consensus pattern (91 bp):
CCCGGATACATTTCCAGCACGAAGCCTGGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCT
GCGGGACTTTGCCCGGATATCACTTT
Found at i:50706518 original size:130 final size:129
Alignment explanation
Indices: 50706284--50706530 Score: 426
Period size: 130 Copynumber: 1.9 Consensus size: 129
50706274 ATTATATTAT
50706284 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGGGGACTTTGGCC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGGGGACTTTGGCC
50706349 CGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATATCACTTTCCCGGATACATTT
66 CGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATA-CA-TTTCCCGGATACATTT
50706414 C
129 C
* *
50706415 CAGCACGAAGCCTGCGGGACTTT-GCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT-GC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTG-GGGACTTTGGC
*
50706478 CCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
65 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
50706531 AGCACGAAGC
Statistics
Matches: 112, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
128 5 0.04
129 2 0.02
130 75 0.67
131 30 0.27
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.22
Consensus pattern (129 bp):
CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGGGGACTTTGGCC
CGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCCGGATACATTTC
Found at i:50706550 original size:77 final size:76
Alignment explanation
Indices: 50706396--50706571 Score: 318
Period size: 77 Copynumber: 2.3 Consensus size: 76
50706386 CCCGGATATC
50706396 ACTTT-CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTTCCAGCACG
1 ACTTTGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTTCCAGCACG
50706460 AAGCCTGCGGG
66 AAGCCTGCGGG
*
50706471 ACTTTGCCCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCAC
1 ACTTTGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT-GCCCGGATACATTTCCAGCAC
50706536 GAAGCCTGCGGG
65 GAAGCCTGCGGG
50706548 ACTTTAGCCCGGATACATTTCCAG
1 ACTTT-GCCCGGATACATTTCCAG
50706572 TGTCTTGCAT
Statistics
Matches: 96, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
75 5 0.05
76 36 0.38
77 38 0.40
78 17 0.18
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.23
Consensus pattern (76 bp):
ACTTTGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGCCCGGATACATTTCCAGCACG
AAGCCTGCGGG
Found at i:50712205 original size:39 final size:39
Alignment explanation
Indices: 50712151--50712261 Score: 168
Period size: 39 Copynumber: 2.8 Consensus size: 39
50712141 ATTATATTAT
* * *
50712151 CAGCACAAAGCCTGCGGGACTTTAACTCGGATAAATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATAAATTTC
* * *
50712190 CAGCATGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATAAATTTC
50712229 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
50712262 TCGCATTTAG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATAAATTTC
Found at i:50712304 original size:95 final size:96
Alignment explanation
Indices: 50712180--50712357 Score: 322
Period size: 95 Copynumber: 1.9 Consensus size: 96
50712170 CTTTAACTCG
*
50712180 GATAAATTTCCAGCATGAAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCG
1 GATAAATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCG
50712245 GGACTTTAGCCCGGATATCGCATTTAGCCCA
66 GGACTTTAGCCCGGATATCGCATTTAGCCCA
* *
50712276 GATACATTT-CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACGAAGCCTGCG
1 GATAAATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCG
50712340 GGACTTTAGCCCGGATAT
66 GGACTTTAGCCCGGATAT
50712358 ATTTCCAGCA
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
95 71 0.90
96 8 0.10
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (96 bp):
GATAAATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCG
GGACTTTAGCCCGGATATCGCATTTAGCCCA
Found at i:50712334 original size:39 final size:39
Alignment explanation
Indices: 50712267--50712482 Score: 344
Period size: 39 Copynumber: 5.6 Consensus size: 39
50712257 GGATATCGCA
*
50712267 TTTAGCCCAGATACATTT-CAGCACGAAGCCTGCGGGAC
1 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGAC
* *
50712305 TTTGGCCCGGATATATTTCCAGCACGAAGCCTGCGGGAC
1 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGAC
* *
50712344 TTTAGCCCGGATATATTTCCAGCACAAAGCCTGCGGGAC
1 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGAC
* * * *
50712383 TTTGGCCCAGATATATTTCCAACACGAAGCCTGCGGGAC
1 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGAC
50712422 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGAC
1 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGAC
50712461 TTTAGCCCGGATACATTTCCAG
1 TTTAGCCCGGATACATTTCCAG
50712483 TGTCTTGCAT
Statistics
Matches: 164, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 15 0.09
39 149 0.91
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGAC
Found at i:50712396 original size:134 final size:134
Alignment explanation
Indices: 50712150--50712396 Score: 395
Period size: 134 Copynumber: 1.8 Consensus size: 134
50712140 AATTATATTA
* * *
50712150 TCAGCACAAAGCCTGCGGGACTTTAACTCGGATAAATTTCCAGCATGAAGCCTGCGGGACTTTGG
1 TCAGCACAAAGCCTGCGGGACTTTAACCCGGATAAATTTCCAGCACGAAGCCTGCGGGACTTTAG
* *
50712215 CCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATATCGCATTTAGCCCAGATA
66 CCCGGATACATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCAGATATCGCATTTAGCCCAGATA
50712280 CATT
131 CATT
* ** *
50712284 TCAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAG
1 TCAGCACAAAGCCTGCGGGACTTTAACCCGGATAAATTTCCAGCACGAAGCCTGCGGGACTTTAG
* *
50712349 CCCGGATATATTTCCAGCACAAAGCCTGCGGGACTTTGGCCCAGATAT
66 CCCGGATACATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCAGATAT
50712397 ATTTCCAACA
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
134 102 1.00
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (134 bp):
TCAGCACAAAGCCTGCGGGACTTTAACCCGGATAAATTTCCAGCACGAAGCCTGCGGGACTTTAG
CCCGGATACATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCAGATATCGCATTTAGCCCAGATA
CATT
Found at i:50719825 original size:35 final size:35
Alignment explanation
Indices: 50719786--50719855 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
50719776 GTCTAGGATC
* *
50719786 ACATATCTTTGAAGATCCCCTTCCATATTTTCCAA
1 ACATATCTTTAAAGATCACCTTCCATATTTTCCAA
* *
50719821 ACATATCTTTAAAGATTACTTTCCATATTTTCCAA
1 ACATATCTTTAAAGATCACCTTCCATATTTTCCAA
50719856 GCTCCGGAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.40
Consensus pattern (35 bp):
ACATATCTTTAAAGATCACCTTCCATATTTTCCAA
Found at i:50721001 original size:26 final size:27
Alignment explanation
Indices: 50720962--50721029 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 27
50720952 AAACATATAT
* **
50720962 CACATAGGGGCAAAACAATCATTTTGC
1 CACATAAGGGCAAAACAATCATTTTAA
* **
50720989 CACATAA-GGCAAACCTGTCATTTTAA
1 CACATAAGGGCAAAACAATCATTTTAA
50721015 CACATAAGGGCAAAA
1 CACATAAGGGCAAAA
50721030 TAGTTATTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
26 21 0.64
27 12 0.36
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (27 bp):
CACATAAGGGCAAAACAATCATTTTAA
Found at i:50721118 original size:27 final size:27
Alignment explanation
Indices: 50721059--50721111 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
50721049 GGTAAAAATT
* *
50721059 GTCATTTTACCCTATAGGGGTATTACA
1 GTCATTTTACCCGACAGGGGTATTACA
*
50721086 GTCATTTTACTCGACAGGGGTATTAC
1 GTCATTTTACCCGACAGGGGTATTAC
50721112 GATCATTCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCGACAGGGGTATTACA
Found at i:50723312 original size:17 final size:18
Alignment explanation
Indices: 50723285--50723320 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
50723275 AATCAAATAT
50723285 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
50723303 ATGC-TATTAATTTATTA
1 ATGCATATTAAATTATTA
50723320 A
1 A
50723321 AACAAGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:50727117 original size:27 final size:27
Alignment explanation
Indices: 50727087--50727162 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
50727077 ATACCTTCAA
* *
50727087 TTTGGAAAATTATCGAAATACCCCTGG
1 TTTGAAAAATTACCGAAATACCCCTGG
50727114 TTTGAAAAATTACCGAAATACCCCTGG
1 TTTGAAAAATTACCGAAATACCCCTGG
* * **
50727141 TTCGTAAAATTACTAAAATACC
1 TTTGAAAAATTACCGAAATACC
50727163 TTGGTACTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (27 bp):
TTTGAAAAATTACCGAAATACCCCTGG
Found at i:50727233 original size:53 final size:53
Alignment explanation
Indices: 50727171--50727281 Score: 134
Period size: 53 Copynumber: 2.1 Consensus size: 53
50727161 CCTTGGTACT
*
50727171 GTAAATAACCATAATACACTTGAAGTGTAAAATGA-CTGTAAGGCCACTATAAG
1 GTAAATAACCATAATACACTTGAAGGGTAAAATGATC-GTAAGGCCACTATAAG
* * * * * * *
50727224 GTAATTAACCGTAATACCCTTGTAGGGTAAAATGATCGTAATGCCCCTATAGG
1 GTAAATAACCATAATACACTTGAAGGGTAAAATGATCGTAAGGCCACTATAAG
50727277 GTAAA
1 GTAAA
50727282 ATGACCGTAA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
53 47 0.98
54 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (53 bp):
GTAAATAACCATAATACACTTGAAGGGTAAAATGATCGTAAGGCCACTATAAG
Found at i:50727306 original size:27 final size:27
Alignment explanation
Indices: 50727231--50727300 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
50727221 AAGGTAATTA
*
50727231 ACCGTAATACCCTTGTAGGGTAAAATG
1 ACCGTAATACCCCTGTAGGGTAAAATG
* * *
50727258 ATCGTAATGCCCCTATAGGGTAAAATG
1 ACCGTAATACCCCTGTAGGGTAAAATG
50727285 ACCGTAATACCCCTGT
1 ACCGTAATACCCCTGT
50727301 GTGGTAGAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (27 bp):
ACCGTAATACCCCTGTAGGGTAAAATG
Found at i:50731014 original size:28 final size:26
Alignment explanation
Indices: 50730956--50731032 Score: 66
Period size: 28 Copynumber: 2.8 Consensus size: 26
50730946 GATGGGTCAT
* *
50730956 AAATACCCTTGGTTTGGAAAATTACTGA
1 AAATACCC-CGGTTTGTAAAATTACT-A
*
50730984 AATATCCCCCGGTTTGTAAAATTA-TCA
1 AA-ATACCCCGGTTTGTAAAATTACT-A
*
50731011 AAATACCCCGGTAGTGTAAAAT
1 AAATACCCCGGT-TTGTAAAAT
50731033 GAGCGTAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
26 9 0.22
27 12 0.29
28 15 0.37
29 5 0.12
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (26 bp):
AAATACCCCGGTTTGTAAAATTACTA
Found at i:50731067 original size:27 final size:27
Alignment explanation
Indices: 50731012--50731123 Score: 100
Period size: 27 Copynumber: 4.2 Consensus size: 27
50731002 AAATTATCAA
** * *
50731012 AATACCCCGGTAGTGTAAAATGAGCGT
1 AATACCCTTGTAGGGTAAAATGACCGT
* **
50731039 AATATCCTTGTAGGGTAAAATGATTGT
1 AATACCCTTGTAGGGTAAAATGACCGT
* * * *
50731066 AATGCCCCTGTAAGGT-AATTGACCGT
1 AATACCCTTGTAGGGTAAAATGACCGT
* *
50731092 AATACCCTTGTTGGGTAAAATGACCGC
1 AATACCCTTGTAGGGTAAAATGACCGT
50731119 AATAC
1 AATAC
50731124 TCCTGTATGG
Statistics
Matches: 65, Mismatches: 19, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
26 19 0.29
27 46 0.71
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (27 bp):
AATACCCTTGTAGGGTAAAATGACCGT
Found at i:50741365 original size:12 final size:11
Alignment explanation
Indices: 50741338--50741373 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
50741328 GAAAATAACC
50741338 AAAATTAA-TA
1 AAAATTAATTA
50741348 AAAATTAATTA
1 AAAATTAATTA
50741359 TAAAATTAATTA
1 -AAAATTAATTA
50741371 AAA
1 AAA
50741374 TTCAACATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 8 0.33
11 5 0.21
12 11 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:50743647 original size:20 final size:20
Alignment explanation
Indices: 50743622--50743665 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
50743612 TGGTCACACA
50743622 CGCCCGTGTGACATGGGACT
1 CGCCCGTGTGACATGGGACT
*
50743642 CGCCCGTGTGACATGGGTCT
1 CGCCCGTGTGACATGGGACT
50743662 CGCC
1 CGCC
50743666 TATGTAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.11, C:0.34, G:0.34, T:0.20
Consensus pattern (20 bp):
CGCCCGTGTGACATGGGACT
Found at i:50745180 original size:21 final size:21
Alignment explanation
Indices: 50745111--50745180 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
50745101 CACAAATATT
50745111 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
** * * *
50745132 ATGAGTTCGGATGGCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
50745156 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
50745177 ATGA
1 ATGA
50745181 GTTCATATTA
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 4 0.12
23 4 0.12
24 9 0.26
25 2 0.06
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.20
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:50753276 original size:85 final size:85
Alignment explanation
Indices: 50753133--50753311 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
50753123 GGCCGGCCAT
50753133 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
50753198 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
50753218 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
50753283 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
50753303 GGGCATGGG
1 GAGCATGGG
50753312 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:50755532 original size:47 final size:47
Alignment explanation
Indices: 50755481--50755867 Score: 531
Period size: 47 Copynumber: 8.1 Consensus size: 47
50755471 TTAGGATTTT
* *
50755481 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** ***
50755528 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATTATCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
50755579 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
50755626 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCA
*
50755677 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
50755724 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
50755771 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
50755818 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
50755865 ATG
1 ATG
50755868 CGAAACGTGT
Statistics
Matches: 304, Mismatches: 28, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
47 217 0.71
48 1 0.00
49 2 0.01
50 1 0.00
51 83 0.27
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:50755592 original size:98 final size:97
Alignment explanation
Indices: 50755481--50755867 Score: 561
Period size: 98 Copynumber: 4.0 Consensus size: 97
50755471 TTAGGATTTT
* *
50755481 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
***
50755546 CGTATATATATGTGTGATAAGGCCGAATTATCA
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCA
50755579 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
50755644 TGTATATATATGCGTGATAAGGCCGAATGGCCA
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCA
*
50755677 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
***
50755740 C-ATGCGTATGTGTGATAAGGCCGAATGGCCA
66 CGATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
50755771 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
50755836 TGA-ATATATGTG-G-TAAGGCCGAATGGCTA
66 CGATATATATGTGTGATAAGGCCGAATGGCCA
50755865 ATG
1 ATG
50755868 CGAAACGTGT
Statistics
Matches: 264, Mismatches: 22, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
94 103 0.39
95 1 0.00
96 6 0.02
97 1 0.00
98 153 0.58
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (97 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:50755639 original size:145 final size:143
Alignment explanation
Indices: 50755481--50755860 Score: 518
Period size: 145 Copynumber: 2.6 Consensus size: 143
50755471 TTAGGATTTT
* *
50755481 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
* *
50755546 CGTATATATATGTGTGATAAGGCCGAATTATCAATGTGATGAATGTGAACATGCATATGTGTGAT
65 CG-ATATATATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATGTGTGAT
50755611 AAGGCCGAATGGCCA
129 AAGGCCGAATGGCCA
** *
50755626 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*** * *
50755691 AA-C-ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTG
62 AACCGATATATATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATGTGTG
50755754 ATAAGGCCGAATGGCCA
127 ATAAGGCCGAATGGCCA
* * *
50755771 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC-
*
50755836 TGA-ATATATGTG-G-TAAGGCCGAATG
65 CGATATATATGTGTGATAAGGCCGAATG
50755861 GCTAATGCGA
Statistics
Matches: 206, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
141 52 0.25
142 1 0.00
143 6 0.03
144 2 0.01
145 101 0.49
146 1 0.00
147 1 0.00
149 42 0.20
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (143 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
GATATATATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATGTGTGATAA
GGCCGAATGGCCA
Found at i:50755704 original size:23 final size:23
Alignment explanation
Indices: 50755677--50755751 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
50755667 CGAATGGCCA
50755677 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
50755700 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
50755724 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
50755747 ATGTG
1 ATGTG
50755752 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:50755930 original size:46 final size:46
Alignment explanation
Indices: 50755841--50755931 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
50755831 GAACATGAAT
* * * *
50755841 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
50755887 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
50755932 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:50755938 original size:141 final size:140
Alignment explanation
Indices: 50755481--50755916 Score: 448
Period size: 145 Copynumber: 3.0 Consensus size: 140
50755471 TTAGGATTTT
* * * * * *
50755481 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
* *** * * *
50755546 CGTATATATATGTGTGATAAGGCCGAATTATCAATGTGATGAATGTGAACATGCATATGTGTGAT
66 TG-A-ATATA--TGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTATGTGTGAT
* *
50755611 AAGGCCGAATGGCCA
126 AAAGCCAAATGGCCA
* * * *
50755626 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACATG--CATATAT--GAGATAAGGCCAAATGGCCAATGTGATGAATGTG
** * * *
50755691 AACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
62 AACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTATGTGTGAT
* *
50755756 AAGGCCGAATGGCCA
126 AAAGCCAAATGGCCA
50755771 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
* * *
50755836 TGAATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGAGATG-GATATGTG-G-TA
66 TGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--ACATGCG-TATGTGTGATA
*
50755897 AAGCCAAATGGCTA
127 AAGCCAAATGGCCA
50755911 ATGTGA
1 ATGTGA
50755917 GATATGTACG
Statistics
Matches: 254, Mismatches: 29, Indels: 21
0.84 0.10 0.07
Matches are distributed among these distances:
139 5 0.02
140 20 0.08
141 67 0.26
142 10 0.04
143 6 0.02
145 101 0.40
147 7 0.03
149 38 0.15
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
TGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACATGCGTATGTGTGATAAAGC
CAAATGGCCA
Found at i:50756223 original size:37 final size:37
Alignment explanation
Indices: 50756078--50756222 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
50756068 GGAAATATAT
50756078 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
50756115 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
50756152 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
50756189 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
50756223 TCGTCTGAGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:50757887 original size:40 final size:40
Alignment explanation
Indices: 50757487--50757875 Score: 631
Period size: 40 Copynumber: 9.8 Consensus size: 40
50757477 GAGAATTGAG
50757487 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50757527 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50757567 AGTG--ATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50757605 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50757644 AGTGATATATCCAGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50757684 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50757724 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50757764 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
50757804 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
50757844 GGTGTTATATCCAGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
50757876 ATCATGCTGG
Statistics
Matches: 325, Mismatches: 21, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.11
39 38 0.12
40 251 0.77
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:50758158 original size:58 final size:57
Alignment explanation
Indices: 50758085--50758193 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
50758075 CGAATGATTA
* *
50758085 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGCGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTC-TTCAACCAAGCACTATGCGTGCGAAATCGGTAATT
* * * *
50758143 GAGGCACTGTGTGTGCGAGTTCTTCAACCAAGCACTATGTGTGCGAGATCG
1 GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGCGTGCGAAATCG
50758194 ATCAGTGGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 25 0.56
58 20 0.44
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGCGTGCGAAATCGGTAATT
Found at i:50762023 original size:47 final size:47
Alignment explanation
Indices: 50761972--50762358 Score: 508
Period size: 47 Copynumber: 8.1 Consensus size: 47
50761962 TTAGGATTTT
* *
50761972 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * *
50762019 ATGTGATGAATGTGAACCCGTATATATATGTTTGCTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
50762070 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
50762117 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
50762169 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
50762215 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
50762262 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
50762309 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
50762356 ATG
1 ATG
50762359 CGAAACGTGT
Statistics
Matches: 303, Mismatches: 26, Indels: 22
0.86 0.07 0.06
Matches are distributed among these distances:
46 61 0.20
47 156 0.51
48 1 0.00
49 2 0.01
51 42 0.14
52 26 0.09
53 15 0.05
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:50762083 original size:98 final size:97
Alignment explanation
Indices: 50761972--50762358 Score: 556
Period size: 98 Copynumber: 4.0 Consensus size: 97
50761962 TTAGGATTTT
*
50761972 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
50762037 CGTATATATATGTTTGCTAAGGCCGAATGGCCA
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCA
50762070 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
50762135 TGTATATATATATGCGTGATAAGG-CGAATGGCCA
66 CG---ATATATATGTGTGATAAGGCCGAATGGCCA
50762169 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
***
50762231 C-ATGCGTATGTGTGATAAGGCCGAATGGCCA
66 CGATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
50762262 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
50762327 TGA-ATATATGTG-G-TAAGGCCGAATGGCTA
66 CGATATATATGTGTGATAAGGCCGAATGGCCA
50762356 ATG
1 ATG
50762359 CGAAACGTGT
Statistics
Matches: 264, Mismatches: 18, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
92 15 0.06
93 43 0.16
94 44 0.17
95 1 0.00
96 6 0.02
97 1 0.00
98 91 0.34
99 46 0.17
100 17 0.06
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (97 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:50762121 original size:145 final size:142
Alignment explanation
Indices: 50761972--50762358 Score: 507
Period size: 145 Copynumber: 2.7 Consensus size: 142
50761962 TTAGGATTTT
* *
50761972 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
*
50762037 CGTATATATATGTTTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
65 CG-ATATATATG-TTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
50762102 AAGGCCGAATGGCCA
128 AAGGCCGAATGGCCA
** *
50762117 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGG-CGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
***
50762181 TGAA-C-ATGCGTATGTGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAACATGCGTATGTG
60 TGAACCGATATATATGT-TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTG
50762243 TGATAAGGCCGAATGGCCA
124 TGATAAGGCCGAATGGCCA
* *
50762262 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC-
* * *
50762327 TGA-ATATATG-TGGTAAGGCCGAATGGCTAATG
65 CGATATATATGTTGATAAGGCCGAATGGCCAATG
50762359 CGAAACGTGT
Statistics
Matches: 210, Mismatches: 20, Indels: 28
0.81 0.08 0.11
Matches are distributed among these distances:
139 14 0.07
140 33 0.16
141 12 0.06
142 4 0.02
143 1 0.00
144 1 0.00
145 89 0.42
146 14 0.07
148 1 0.00
150 26 0.12
151 15 0.07
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (142 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
GATATATATGTTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAG
GCCGAATGGCCA
Found at i:50762421 original size:46 final size:46
Alignment explanation
Indices: 50762332--50762422 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
50762322 GAACATGAAT
* * * *
50762332 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
50762378 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
50762423 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:50762711 original size:37 final size:37
Alignment explanation
Indices: 50762570--50762710 Score: 246
Period size: 37 Copynumber: 3.8 Consensus size: 37
50762560 AATATATTCC
50762570 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
50762607 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
50762644 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* * *
50762681 GGTAAGACCCGATAACTTCATGTGGAGATT
1 GGTAAGACCCGATGACTACGTGTGGAGATT
50762711 TCGTCTGAGC
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:50764760 original size:40 final size:40
Alignment explanation
Indices: 50764682--50764762 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
50764672 TGATGACATA
* *
50764682 TCGGCTAAATATGGCACTTAGTGTGCGATTGGGTATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGCAATTGAGTATAGCT
*
50764722 TCGGCTAAATTTGGCACTTAGTGTGCAATTTGAG-ATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGCAA-TTGAGTATAGCT
50764762 T
1 T
50764763 TAGCTATGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 33 0.89
41 4 0.11
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (40 bp):
TCGGCTAAATATGGCACTTAGTGTGCAATTGAGTATAGCT
Found at i:50775068 original size:16 final size:16
Alignment explanation
Indices: 50775047--50775077 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
50775037 CACACGGGCA
50775047 TGTCACTGGTCGTGTG
1 TGTCACTGGTCGTGTG
50775063 TGTCACTGGTCGTGT
1 TGTCACTGGTCGTGT
50775078 ACACCGGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.19, G:0.35, T:0.39
Consensus pattern (16 bp):
TGTCACTGGTCGTGTG
Found at i:50778802 original size:14 final size:15
Alignment explanation
Indices: 50778772--50778804 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
50778762 GCATAAACAA
50778772 ACACCCAAAACAGCC
1 ACACCCAAAACAGCC
*
50778787 ACACCC-AAACATCC
1 ACACCCAAAACAGCC
50778801 ACAC
1 ACAC
50778805 ATCAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.45, C:0.48, G:0.03, T:0.03
Consensus pattern (15 bp):
ACACCCAAAACAGCC
Found at i:50779598 original size:48 final size:47
Alignment explanation
Indices: 50779538--50779665 Score: 152
Period size: 48 Copynumber: 2.7 Consensus size: 47
50779528 CAAAGTGCTG
* *
50779538 ATGCCATATCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA-T-GCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--AT-AAGTGGCCA
* * * *
50779586 ATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAA-GTGGCCA
50779634 ATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
50779666 ACACGTATCA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
45 2 0.03
46 1 0.01
47 1 0.01
48 64 0.94
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAGTGGCCA
Found at i:50785195 original size:50 final size:50
Alignment explanation
Indices: 50785127--50785223 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
50785117 GAAGCATAAG
*
50785127 CTATTACTTTGTCATTTTGCATAAGCACACAACCCAGTCCATTTAAGCGA
1 CTATTACCTTGTCATTTTGCATAAGCACACAACCCAGTCCATTTAAGCGA
50785177 CTATTACCTTGTCATTTTGCATAAGCACACAACCCAGTCCATTTAAG
1 CTATTACCTTGTCATTTTGCATAAGCACACAACCCAGTCCATTTAAG
50785224 GACGCATCGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (50 bp):
CTATTACCTTGTCATTTTGCATAAGCACACAACCCAGTCCATTTAAGCGA
Found at i:50785220 original size:27 final size:27
Alignment explanation
Indices: 50785139--50785220 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
50785129 ATTACTTTGT
50785139 CATTTTGCATAAGCACACAACCCAGTC
1 CATTTTGCATAAGCACACAACCCAGTC
** **
50785166 CA--TT---TAAGCGACTATTACCTTGT-
1 CATTTTGCATAAGC-AC-ACAACCCAGTC
50785189 CATTTTGCATAAGCACACAACCCAGTC
1 CATTTTGCATAAGCACACAACCCAGTC
50785216 CATTT
1 CATTT
50785221 AAGGACGCAT
Statistics
Matches: 39, Mismatches: 8, Indels: 16
0.62 0.13 0.25
Matches are distributed among these distances:
22 5 0.13
23 4 0.10
24 6 0.15
25 4 0.10
26 6 0.15
27 9 0.23
28 5 0.13
ACGTcount: A:0.30, C:0.29, G:0.11, T:0.29
Consensus pattern (27 bp):
CATTTTGCATAAGCACACAACCCAGTC
Found at i:50789596 original size:93 final size:93
Alignment explanation
Indices: 50789488--50789659 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
50789478 GTCCATAAGT
* * *
50789488 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50789553 TGAGATCGAATGCCTAGTTACATCTCTC
66 CGAGATCGAATGCCTAGTTACATCTCTC
* *
50789581 GAACTCAGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
50789646 CGAGTTCGGATGCC
66 CGAGATCGAATGCC
50789660 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGATCGAATGCCTAGTTACATCTCTC
Found at i:50789655 original size:46 final size:46
Alignment explanation
Indices: 50789479--50789655 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
50789469 ATGTAACCCG
* *
50789479 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
* * *
50789525 TCCATAAGTGAACTCGGACTCAACTCAATGAGATC-GA-ATGC-CTA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A
* *** * *
50789569 GTTACATCTCTCGAACTCAGACTCAACTCAATGAGTTCGGACATTCGCA
1 --TCCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
*
50789618 TCCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50789656 TGCCCAAACA
Statistics
Matches: 105, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 29 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
Found at i:50791334 original size:28 final size:28
Alignment explanation
Indices: 50791279--50791334 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
50791269 ACAACGGTTT
*
50791279 TCACACGGCCAAGCACATGCCCGTGTCCC
1 TCACACGGCCAA-CACAAGCCCGTGTCCC
50791308 TCACACGGCCTAA-ACAAGCCCGTGTCC
1 TCACACGGCC-AACACAAGCCCGTGTCC
50791335 TCGCCCGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 13 0.52
29 10 0.40
30 2 0.08
ACGTcount: A:0.23, C:0.43, G:0.20, T:0.14
Consensus pattern (28 bp):
TCACACGGCCAACACAAGCCCGTGTCCC
Found at i:50793290 original size:25 final size:25
Alignment explanation
Indices: 50793255--50793348 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
50793245 CTCCTTTAAT
*
50793255 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* * *
50793280 AATTGGGGCAAGGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
50793305 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
50793330 AACT-GGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
50793349 AGCACTTCCT
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
24 14 0.23
25 47 0.77
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:50793583 original size:27 final size:27
Alignment explanation
Indices: 50793553--50793770 Score: 237
Period size: 27 Copynumber: 8.1 Consensus size: 27
50793543 GGCAAAATGG
* * *
50793553 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
50793580 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
50793606 GTATTTTTACCCTACAAGGGTATTTCGA
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
50793634 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
50793660 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
50793688 TAATTCTACCCTAC-AGGGTTATTT-TA
1 TAATTCTACCCTACAAGGG-TATTTCGA
* *
50793714 GTAATTCTACCCTACAAGGGTATTTTGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * *
50793742 TAATTCTACCGTACAGGGGTATTTTGA
1 TAATTCTACCCTACAAGGGTATTTCGA
50793769 TA
1 TA
50793771 TTTTACAAAT
Statistics
Matches: 164, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.03
27 154 0.94
28 5 0.03
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:50793698 original size:81 final size:80
Alignment explanation
Indices: 50793552--50793765 Score: 279
Period size: 81 Copynumber: 2.6 Consensus size: 80
50793542 GGGCAAAATG
* * * * *
50793552 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTATTTTTACC
1 GTAATTCTACCCTACAAGGGTATTTCG-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
50793617 CTACAAGGG-TATTTCGA
65 CTAC-AGGGTTATTT-GA
* *
50793634 -TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTC-GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
50793698 CTACAGGGTTATTTTA
65 CTACAGGGTTATTTGA
* *
50793714 GTAATTCTACCCTACAAGGGTATTTTGGTAATTCTACCGTACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTA-TTTCGTAATTCTACCCTACAGGGGTATTT
50793766 TGATATTTTA
Statistics
Matches: 117, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
80 5 0.04
81 108 0.92
82 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (80 bp):
GTAATTCTACCCTACAAGGGTATTTCGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
TACAGGGTTATTTGA
Found at i:50793766 original size:54 final size:54
Alignment explanation
Indices: 50793552--50793765 Score: 320
Period size: 54 Copynumber: 4.0 Consensus size: 54
50793542 GGGCAAAATG
* * *
50793552 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* *
50793606 GTATTTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* * * *
50793660 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* * *
50793714 GTAATTCTACCCTACAAGGGTATTTTGGTAATTCTACCGTACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
50793766 TGATATTTTA
Statistics
Matches: 147, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 147 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
Found at i:50793823 original size:27 final size:26
Alignment explanation
Indices: 50793646--50794022 Score: 247
Period size: 27 Copynumber: 13.9 Consensus size: 26
50793636 ATTCTACCCT
** * **
50793646 ACAGGGGTATTTCAGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
* * **
50793673 ACAGGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
* * * **
50793700 ACAGGGTTATTTTAGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
* * **
50793727 ACAAGGGTATTTTGGTAATTCTACCGT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
*
50793754 ACAGGGGTATTTTGAT-ATTTTACAA
1 ACAGGGGTATTTTGGTAATTTTACAA
** * * * *
50793779 A-TTGAGTATTTCGATAATTTCACAA
1 ACAGGGGTATTTTGGTAATTTTACAA
50793804 ATCAGGGGTATTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTGGTAATTTTACAA
* *
50793831 GCCAAGGGTATTTTGGTAATTTTACAA
1 -ACAGGGGTATTTTGGTAATTTTACAA
*
50793858 ACTAGGGGTATTTTAGTAATTTTACAA
1 AC-AGGGGTATTTTGGTAATTTTACAA
50793885 ACCAGGGGTATTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTGGTAATTTTACAA
*
50793912 ACTAGGGGTATTTTAGTAATTTTAATTTTACAA
1 AC-AGGGGTATTTT-G-----GTAATTTTACAA
*
50793945 ACTAGGGGTATTTTGGTAATTTTACTGA
1 AC-AGGGGTATTTTGGTAATTTTAC-AA
* **
50793973 TC-GAGGGTATTTTGGTAATTTTGTAA
1 ACAG-GGGTATTTTGGTAATTTTACAA
* *
50793999 ACCAAGGGTATTTTAGTAATTTTA
1 A-CAGGGGTATTTTGGTAATTTTA
50794023 TAAATCGAGG
Statistics
Matches: 292, Mismatches: 41, Indels: 34
0.80 0.11 0.09
Matches are distributed among these distances:
24 10 0.03
25 11 0.04
26 9 0.03
27 232 0.79
28 4 0.01
32 1 0.00
33 25 0.09
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (26 bp):
ACAGGGGTATTTTGGTAATTTTACAA
Found at i:50793984 original size:87 final size:87
Alignment explanation
Indices: 50793793--50794022 Score: 294
Period size: 87 Copynumber: 2.7 Consensus size: 87
50793783 AGTATTTCGA
* * * *
50793793 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTT-G-----GTAATT
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTAATT
50793852 TTACAAACTAGGGGTATTTTAG
66 TTACAAACTAGGGGTATTTTAG
* *
50793874 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTAATT
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTAATT
*
50793939 TTACAAACTAGGGGTATTTTGG
66 TTACAAACTAGGGGTATTTTAG
** * **
50793961 TAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTA
1 TAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTA
50794023 TAAATCGAGG
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
81 47 0.37
82 1 0.01
86 1 0.01
87 79 0.62
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (87 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTAATT
TTACAAACTAGGGGTATTTTAG
Found at i:50794033 original size:27 final size:27
Alignment explanation
Indices: 50794014--50794305 Score: 431
Period size: 27 Copynumber: 10.8 Consensus size: 27
50794004 GGGTATTTTA
50794014 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
50794041 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
50794068 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
50794095 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
50794122 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
50794149 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
50794176 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
50794203 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
50794230 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
50794257 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
50794284 GTAATTCTACAAATTGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
50794306 TTTCAGTAAT
Statistics
Matches: 249, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 249 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:50794035 original size:114 final size:114
Alignment explanation
Indices: 50793820--50794033 Score: 286
Period size: 114 Copynumber: 1.9 Consensus size: 114
50793810 GGTATTTTGG
* *
50793820 TAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAA
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTAGTAATTTTACAA
* * *
50793885 ACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTT
66 ACCAAGGGTATTTTAGTAATTTTACAAACGAGGGGTATTTTAGTAATTT
* * * * * **
50793934 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGTA
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC-AAACGAGGGGTATTTTAGTAATTTTACA
*
50793998 AACCAAGGGTATTTTAGTAATTTTATAAATCGAGGG
65 AACCAAGGGTATTTTAGTAATTTTACAAA-CGAGGG
50794034 TAAAATGGTA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
114 77 0.91
115 8 0.09
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (114 bp):
TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTAGTAATTTTACAA
ACCAAGGGTATTTTAGTAATTTTACAAACGAGGGGTATTTTAGTAATTT
Found at i:50794043 original size:141 final size:141
Alignment explanation
Indices: 50793793--50794046 Score: 343
Period size: 141 Copynumber: 1.8 Consensus size: 141
50793783 AGTATTTCGA
50793793 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAA
1 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAA
* * ***
50793858 ACTAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTAT
66 ACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAATGGTAATTTTACAAACTAGGGGTAT
50793923 TTTAGTAATTT
131 TTTAGTAATTT
* * * * **
50793934 TAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTAC-TGATCGAGGGTATTTTGGTAATTTTGT
1 TAATTTCACAAATC-AGGGGTATTTTGGTAATTTTACAAG-CCAAGGGTATTTTGGTAATTTTAC
* *
50793997 AAACCAAGGGTATTTTAGTAATTTTATAAATC-GAGGGTAAAATGGTAATT
64 AAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTAAAATGGTAATT
50794047 CTGTAAATCG
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
140 3 0.03
141 94 0.97
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (141 bp):
TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAA
ACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAATGGTAATTTTACAAACTAGGGGTAT
TTTAGTAATTT
Found at i:50794316 original size:54 final size:54
Alignment explanation
Indices: 50794014--50794305 Score: 494
Period size: 54 Copynumber: 5.4 Consensus size: 54
50794004 GGGTATTTTA
* * *
50794014 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
*
50794068 ATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* *
50794122 ATAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
50794176 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* *
50794230 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* *
50794284 GTAATTCTACAAATTGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
50794306 TTTCAGTAAT
Statistics
Matches: 226, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 226 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
Found at i:50794317 original size:81 final size:81
Alignment explanation
Indices: 50794014--50794305 Score: 503
Period size: 81 Copynumber: 3.6 Consensus size: 81
50794004 GGGTATTTTA
* * *
50794014 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
50794079 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
*
50794095 GTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
50794160 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
50794176 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
50794241 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * *
50794257 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTACAAATTGAGGGTA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
50794306 TTTCAGTAAT
Statistics
Matches: 201, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 201 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:50801117 original size:17 final size:18
Alignment explanation
Indices: 50801081--50801118 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50801071 ACTAAGACAT
50801081 ATTAAACACAAACAATAA
1 ATTAAACACAAACAATAA
50801099 ATTAAGACAC-AAC-ATAA
1 ATTAA-ACACAAACAATAA
50801116 ATT
1 ATT
50801119 TGACTGTAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 8 0.42
19 4 0.21
ACGTcount: A:0.61, C:0.16, G:0.03, T:0.21
Consensus pattern (18 bp):
ATTAAACACAAACAATAA
Found at i:50801428 original size:20 final size:19
Alignment explanation
Indices: 50801399--50801437 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
50801389 CTAGCTCAAC
50801399 GAGCTAAATTAAGCTCAAAT
1 GAGCTAAATTAAGCT-AAAT
* *
50801419 GAGCTGAATTGAGCTAAAT
1 GAGCTAAATTAAGCTAAAT
50801438 AGAGATCGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.26
Consensus pattern (19 bp):
GAGCTAAATTAAGCTAAAT
Found at i:50804176 original size:53 final size:53
Alignment explanation
Indices: 50804073--50804177 Score: 124
Period size: 53 Copynumber: 2.0 Consensus size: 53
50804063 TCTTTTTTTA
* * * *
50804073 AACTTACCATTGCCATCTCTTGACATGGTCTTACGTGGTGTCCTTGCCTTATG
1 AACTCACCATTGCCATCTCTTGACATAGTCTTACATGGTGTCCTTACCTTATG
* *
50804126 AACTCACCATTGCCATGC-CTTGGCATAGTCTTACATGG-GATCTTTACCTTAT
1 AACTCACCATTGCCAT-CTCTTGACATAGTCTTACATGGTG-TCCTTACCTTAT
50804178 AGTAGTTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
52 1 0.02
53 42 0.95
54 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTCACCATTGCCATCTCTTGACATAGTCTTACATGGTGTCCTTACCTTATG
Found at i:50811311 original size:53 final size:54
Alignment explanation
Indices: 50811228--50811429 Score: 208
Period size: 53 Copynumber: 3.7 Consensus size: 54
50811218 TTTTTTTAAA
* * * *
50811228 CTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTAT-GAG
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAG
* * * * *
50811281 CTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAG
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG-AG
* * * * * * * * *
50811336 TTTATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTGTAGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAG
* *
50811390 CTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATC
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
50811430 CTTAGACCTT
Statistics
Matches: 119, Mismatches: 28, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 43 0.36
54 34 0.29
55 42 0.35
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAG
Found at i:50811365 original size:55 final size:53
Alignment explanation
Indices: 50811239--50811421 Score: 168
Period size: 55 Copynumber: 3.4 Consensus size: 53
50811229 TTACCATTGT
* * *
50811239 CATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTATGAGCTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGGGATCATTGCCTTATGAGCTCACCAATGC
* * * * * *
50811292 CATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGC
1 CATGTCTTGACATGGTCTTACATGGGATCATTGCCTTAT-G-AGCTCACCAATGC
* *** * * * *
50811347 CATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTGTAGAACTTACCAATGC
1 CATGTCTTGACATGGTCTTACATGGGATCATTGCCTTAT-GAGCTCACCAATGC
* *
50811401 CATGCCTTGGCATGGTCTTAC
1 CATGTCTTGACATGGTCTTAC
50811422 TTGGTATCCT
Statistics
Matches: 105, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 34 0.32
54 29 0.28
55 42 0.40
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGGATCATTGCCTTATGAGCTCACCAATGC
Found at i:50813156 original size:44 final size:44
Alignment explanation
Indices: 50813102--50813186 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
50813092 TATGTATGAG
* *
50813102 GCATCTGAGCTCATTAAGTTGGTCCAAGTTCATTATGGATGTGA
1 GCATCCGAGCTCATTAAGTTGGTCCAAGTTCATTATAGATGTGA
* * **
50813146 GCATCCGAGCTCGTTGAGTTGGTCTGAGTTCATTATAGATG
1 GCATCCGAGCTCATTAAGTTGGTCCAAGTTCATTATAGATG
50813187 CGGTACATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.34
Consensus pattern (44 bp):
GCATCCGAGCTCATTAAGTTGGTCCAAGTTCATTATAGATGTGA
Found at i:50818419 original size:48 final size:48
Alignment explanation
Indices: 50818301--50818443 Score: 153
Period size: 48 Copynumber: 3.0 Consensus size: 48
50818291 GAGTGTAAAG
* * * *
50818301 TGTCGATGTCATGTCCCAGACATGGT-TTACACTGGCTCACATGTCAA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA
* * * * * * * *
50818348 GGCCGATACCATATTCAAAACATGGTCTTACACTAGCTCTCGTCTCAA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA
* *
50818396 TGTCGATGCCATGTCCCAGACATGGTCTTACACTTGCTCTCATATCAA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA
50818444 CCAAATGTCA
Statistics
Matches: 73, Mismatches: 22, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
47 18 0.25
48 55 0.75
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
TGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA
Found at i:50822009 original size:18 final size:18
Alignment explanation
Indices: 50821986--50822021 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
50821976 CTACAGTAAG
50821986 GAAGGGTGTGGTTACACA
1 GAAGGGTGTGGTTACACA
50822004 GAAGGGTGTGGTTACACA
1 GAAGGGTGTGGTTACACA
50822022 CCTTTTTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.39, T:0.22
Consensus pattern (18 bp):
GAAGGGTGTGGTTACACA
Found at i:50823570 original size:44 final size:44
Alignment explanation
Indices: 50823520--50823608 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
50823510 GCTGCTAGAG
*
50823520 ACACTAGTGATAATCGGCTATAGTAGAGTTTTACTCAATTTCAT
1 ACACTAGTGATAATCGGCTATAGTAGAATTTTACTCAATTTCAT
*
50823564 ACACTAGTGATAATCGTCTATAGTAGAATTTTACTCAATTTCAT
1 ACACTAGTGATAATCGGCTATAGTAGAATTTTACTCAATTTCAT
50823608 A
1 A
50823609 AATTTGCATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (44 bp):
ACACTAGTGATAATCGGCTATAGTAGAATTTTACTCAATTTCAT
Found at i:50824159 original size:28 final size:28
Alignment explanation
Indices: 50824122--50824199 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
50824112 TCAAATATGG
* *
50824122 CACTCAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
* *
50824150 CGCTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
50824178 CACTTAGTGTGTGAAATATTGA
1 CACTTAGTGTGCGAAATATTGA
50824200 ATGATTCAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:50825692 original size:47 final size:48
Alignment explanation
Indices: 50825638--50825766 Score: 165
Period size: 47 Copynumber: 2.7 Consensus size: 48
50825628 TTGTGCCGAC
* *
50825638 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATATGGTTGAA
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAAGAT-GTCGAA
* * * *
50825686 G-CATGTCCCAGACAT-GTCTTACACTAGCCCTCATCTAGATGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAAGATGTCGAA
*
50825732 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCA
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
50825767 AATCACCCAA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 22 0.32
47 30 0.43
48 17 0.25
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAAGATGTCGAA
Found at i:50825754 original size:94 final size:92
Alignment explanation
Indices: 50825448--50825766 Score: 314
Period size: 94 Copynumber: 3.5 Consensus size: 92
50825438 TGGGATATAT
* * *
50825448 TGCCGATGTCGTGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGCGTGCTGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATG-GT--TGATGCATGTCC
* * *
50825513 CAGACATGTCTTACACCAGCAC-AACTCTTA
63 CAGACATGTCTTACACTAGCACTCA-TCTGA
* * * * **
50825543 -GCCGATG--GTGTCCCAGACAT-GTCTCACACTGGCTATC-TGTCGA-GGCCGATGCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT--ATGGTTGATGCATGTCCC
* *
50825602 AGACATGTCTTACTCT-GCACTCAACTTTG-
64 AGACATGTCTTACACTAGCACTC-A-TCTGA
* *
50825631 TGCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGTTGAAGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATATGGTTGATGCATGTCCCA
*
50825696 GACATGTCTTACACTAGCCCTCATCTAGA
65 GACATGTCTTACACTAGCACTCATCT-GA
* *
50825725 TGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
50825767 AATCACCCAA
Statistics
Matches: 185, Mismatches: 25, Indels: 29
0.77 0.10 0.12
Matches are distributed among these distances:
87 4 0.02
88 26 0.14
89 10 0.05
90 3 0.02
91 28 0.15
92 31 0.17
93 31 0.17
94 52 0.28
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGGTTGATGCATGTCCCAG
ACATGTCTTACACTAGCACTCATCTGA
Found at i:50832216 original size:30 final size:30
Alignment explanation
Indices: 50832161--50832218 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
50832151 CATGGCCATG
* *
50832161 ACACACGCCCATGGGTGTGAGCCGTGTGTC
1 ACACACGCCCATGGGTCTGACCCGTGTGTC
* *
50832191 ACACACGCCCATGTGTCTTACCCGTGTG
1 ACACACGCCCATGGGTCTGACCCGTGTG
50832219 GACAAATTAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.17, C:0.33, G:0.28, T:0.22
Consensus pattern (30 bp):
ACACACGCCCATGGGTCTGACCCGTGTGTC
Found at i:50833042 original size:91 final size:94
Alignment explanation
Indices: 50832882--50833203 Score: 306
Period size: 94 Copynumber: 3.4 Consensus size: 94
50832872 GGGATATATT
* *
50832882 GCCGATGACGTGTCCCAGACATGGTCTTACACTGGCTCTCATATGCGCGTGCTGATGCATGTCCT
1 GCCGATGACGTGTCCCAGACATGGTCTTACACTGGCTCTCATATGCGAGTGCCGATGCATGTCCT
50832947 AGACATGTCTTACACTAGCACAACTCTTA
66 AGACATGTCTTACACTAGCACAACTCTTA
* * *
50832976 GCCGATG-CGTGTCCTAGACAT-GTCTTACACTGGCTGTC-TCTGTCGAG-GCCGATGCATGT-C
1 GCCGATGACGTGTCCCAGACATGGTCTTACACTGGCTCTCATATG-CGAGTGCCGATGCATGTCC
* * *
50833036 TCAGACATGTCTTACTCTGGCACTTATCTCTGT-
65 T-AGACATGTCTTACACTAGCAC--AACTCT-TA
* * * * *
50833069 GCCGA-CACCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT---ATTGCTGACGCATGTC
1 GCCGATGA-CGTGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGCGAGTGCCGATGCATGTC
* ** *
50833130 CCAGACATGTCTTACACTAGC-CCTCGTCTGGA
64 CTAGACATGTCTTACACTAGCACAAC-TCT-TA
* *
50833162 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 -GCCGATGACGTGTCCCAGACATGGTCTTACACTGGCTCTCA
50833204 AATCACCCAT
Statistics
Matches: 189, Mismatches: 23, Indels: 32
0.77 0.09 0.13
Matches are distributed among these distances:
90 2 0.01
91 35 0.19
92 23 0.12
93 25 0.13
94 85 0.45
95 17 0.09
96 1 0.01
97 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.28
Consensus pattern (94 bp):
GCCGATGACGTGTCCCAGACATGGTCTTACACTGGCTCTCATATGCGAGTGCCGATGCATGTCCT
AGACATGTCTTACACTAGCACAACTCTTA
Found at i:50833045 original size:47 final size:47
Alignment explanation
Indices: 50832882--50833199 Score: 146
Period size: 47 Copynumber: 6.7 Consensus size: 47
50832872 GGGATATATT
* * * * *
50832882 GCCGATGACGTGTCCCAGACATGGTCTTACACTGGCTCTCATATG-CGCG
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTATC-TCTGTCGAG
* * * *
50832931 TGCTGATGCATGTCCTAGACATGTCTTACACTAGCACAACTCT-T--A-
1 -GCCGATGCATGTCCTAGACATGTCTTACACTGGC-TATCTCTGTCGAG
* *
50832976 GCCGATGCGTGTCCTAGACATGTCTTACACTGGCTGTCTCTGTCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTATCTCTGTCGAG
*
50833023 GCCGATGCATGT-CTCAGACATGTCTTACTCTGGCACTTATCTCTGT----
1 GCCGATGCATGTCCT-AGACATGTCTTACACTGG--C-TATCTCTGTCGAG
** * * *
50833069 GCCGACACCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT--ATT
1 GCCGA-TGCATGTCCTAGACAT-GTCTTACACTGGCTATCTC-T-GTCGA-G
* * * * ** *
50833117 GCTGACGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG--GAT
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTATC-TCTGTCGAG
*
50833163 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCT
50833200 CTCAAATCAC
Statistics
Matches: 212, Mismatches: 32, Indels: 50
0.72 0.11 0.17
Matches are distributed among these distances:
43 8 0.04
44 33 0.16
45 1 0.00
46 27 0.13
47 68 0.32
48 45 0.21
49 16 0.08
50 14 0.07
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCTATCTCTGTCGAG
Found at i:50838033 original size:24 final size:24
Alignment explanation
Indices: 50838001--50838051 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
50837991 TTAATACATG
50838001 CATTACTCAAAACGACCCAAAATT
1 CATTACTCAAAACGACCCAAAATT
*
50838025 CATTACTCAAAATGACCCAAAATT
1 CATTACTCAAAACGACCCAAAATT
50838049 CAT
1 CAT
50838052 ACTTGGGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.45, C:0.27, G:0.04, T:0.24
Consensus pattern (24 bp):
CATTACTCAAAACGACCCAAAATT
Found at i:50839262 original size:40 final size:40
Alignment explanation
Indices: 50839200--50839283 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
50839190 TGACATATCG
*
50839200 GCTAAATATGGCACTCAATGTGCGGTTCG-GTATAGCTTCA
1 GCTAAATATGGCACTCAATGTGCGATTCGAG-ATAGCTTCA
* * * * *
50839240 GCTAAATTTGGCATTTAGTGTGCGATTTGAGATAGCTTCA
1 GCTAAATATGGCACTCAATGTGCGATTCGAGATAGCTTCA
50839280 GCTA
1 GCTA
50839284 TGTACAACAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
GCTAAATATGGCACTCAATGTGCGATTCGAGATAGCTTCA
Found at i:50839350 original size:28 final size:28
Alignment explanation
Indices: 50839319--50839386 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
50839309 TCAAATATGG
50839319 CACTTAGTGTGCGAAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
50839347 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
50839375 CACTTAGTGTGC
1 CACTTAGTGTGC
50839387 AAAAAAATCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:50841402 original size:45 final size:45
Alignment explanation
Indices: 50841338--50841423 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
50841328 CCAAAACATG
*
50841338 TGTCACAAATTTCACGAACTCAAACCACAACTCAATGAGTTTGGA
1 TGTCACAAATATCACGAACTCAAACCACAACTCAATGAGTTTGGA
* * *
50841383 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTT
1 TGTCACAAATATCACGAACTCAAACCACAACTCAATGAGTT
50841424 CAGATTACAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (45 bp):
TGTCACAAATATCACGAACTCAAACCACAACTCAATGAGTTTGGA
Found at i:50846098 original size:16 final size:16
Alignment explanation
Indices: 50846077--50846111 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
50846067 ATCAAAAGAG
50846077 TAAAATTTATTAAAAT
1 TAAAATTTATTAAAAT
50846093 TAAAATTTATTAAAAT
1 TAAAATTTATTAAAAT
50846109 TAA
1 TAA
50846112 TTATCTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TAAAATTTATTAAAAT
Found at i:50856141 original size:44 final size:45
Alignment explanation
Indices: 50856085--50856207 Score: 196
Period size: 44 Copynumber: 2.8 Consensus size: 45
50856075 TTTCACCAGC
50856085 ATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGGA
1 ATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCACCGGA
* * *
50856130 ATTGTAG-CTGCTAGGCTCAAAGGCCCGAATAGTATCTCACTGGC
1 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGA
50856174 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
50856208 TTAGTATGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
43 3 0.04
44 37 0.51
45 32 0.44
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (45 bp):
ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGA
Found at i:50856199 original size:45 final size:45
Alignment explanation
Indices: 50856077--50856207 Score: 203
Period size: 45 Copynumber: 2.9 Consensus size: 45
50856067 CGATATCCTT
*
50856077 TCACCAGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
50856122 TCACCGGAATTGTAG-CTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
50856166 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
50856208 TTAGTATGAT
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
43 3 0.04
44 37 0.47
45 38 0.49
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:50863720 original size:45 final size:45
Alignment explanation
Indices: 50863659--50863835 Score: 266
Period size: 45 Copynumber: 3.9 Consensus size: 45
50863649 CGATATCCTT
* *
50863659 TCACCTGCATTATAGCCTACTAGGCTCAAAAGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAGTATC
* * *
50863704 TCACCGACATTGTAGCCTGCTAGGCTC-AAAGATCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAAG-CCCGAATAGTATC
* *
50863749 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAGTATC
*
50863794 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAGT
50863836 TTCGTATGAT
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
44 4 0.03
45 113 0.94
46 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAGTATC
Found at i:50871098 original size:16 final size:16
Alignment explanation
Indices: 50871064--50871101 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
50871054 ATTTTATGTA
*
50871064 TTATTTATTCTTATTT
1 TTATTTATTCTTATAT
50871080 TTATTTATT-TTATAAT
1 TTATTTATTCTTAT-AT
50871096 TTATTT
1 TTATTT
50871102 CAAACTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATTCTTATAT
Found at i:50872936 original size:21 final size:21
Alignment explanation
Indices: 50872910--50872951 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
50872900 TGCGACTAAG
50872910 CAGTTGTTCTACTATAATTAT
1 CAGTTGTTCTACTATAATTAT
50872931 CAGTTGTTCTACTATAATTAT
1 CAGTTGTTCTACTATAATTAT
50872952 GGCGATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.48
Consensus pattern (21 bp):
CAGTTGTTCTACTATAATTAT
Found at i:50881672 original size:51 final size:52
Alignment explanation
Indices: 50881562--50881672 Score: 136
Period size: 51 Copynumber: 2.1 Consensus size: 52
50881552 GTACTATACT
* * **
50881562 TAAAGAAAAAAGAGACCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACCTTC
1 TAAA-AAAAAAGAGACCAAAGTGAAAACCCACAAAGGACGCTTTGAGACCTAA
* *
50881615 TTAAAAAAAAG-GGCCAAAGTGAAAACCCACAAAGGACGCTTTGAGACAC-AA
1 TAAAAAAAAAGAGACCAAAGTGAAAACCCACAAAGGACGCTTTGAGAC-CTAA
50881666 TAAAAAA
1 TAAAAAA
50881673 TAAAAATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 39 0.78
52 8 0.16
53 3 0.06
ACGTcount: A:0.49, C:0.19, G:0.20, T:0.13
Consensus pattern (52 bp):
TAAAAAAAAAGAGACCAAAGTGAAAACCCACAAAGGACGCTTTGAGACCTAA
Found at i:50883019 original size:43 final size:43
Alignment explanation
Indices: 50882957--50883413 Score: 156
Period size: 45 Copynumber: 10.3 Consensus size: 43
50882947 AGCCACTAGC
* *
50882957 CTTATCTCCCTGAGATAGCAAGGGAGAAGGCTGAAGATTGAAT
1 CTTATCTCCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAT
* * * *
50883000 CTTATCTTCCC-GAGGTAGCAAGGAAGCACATTGAAGATTGTAGAT
1 CTTATC-TCCCTGAGGTAGCAAGGGAGAAGACTGAAGATTG-A-AT
* * * *
50883045 CTAATCTCCCTGAGATAGC-AGTGGAGTAGA-TCGAAGACGGTGAAT
1 CTTATCTCCCTGAGGTAGCAAG-GGAGAAGACT-GAAGA--TTGAAT
* * * ** * **
50883090 CTTATCTTCCC-GAGGTAACAGGGGAGAAGATTTTAGCCACT-AGC
1 CTTATC-TCCCTGAGGTAGCAAGGGAGAAGACTGAAG--ATTGAAT
* * * *
50883134 CTTATCTCCCTGAGGTAGCAAAGGAGAAGGCTAAAGATTGAGT
1 CTTATCTCCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAT
* *** * *
50883177 CTTACCTTGTTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
1 CTTATCTCCCTGAGGTAGCAAGGGAGAAGACTGAAGATTG-A-AT
* * * * * * *
50883222 ATTATCTCCTTGAGATAAC-AGTGGAGTAGA-TCAAAGATAGCAAAT
1 CTTATCTCCCTGAGGTAGCAAG-GGAGAAGACT-GAAGATTG--AAT
* * * * * * ** * **
50883267 CTTATCTTCTTGAGGTAACAAAGGAGTAGATTTTAGCCACT-AGC
1 CTTATCTCCCTGAGGTAGCAAGGGAGAAGACTGAAG--ATTGAAT
* * * * *
50883311 CTTCTCTCCCTAAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGT
1 CTTATCTCCCTGAGGTAGCAAGGGAGAAGACTGAAGATTG-AAT
* * * * *
50883355 CTTATCTTCCTGTGGAAGCAAGGAAGAAGATTGAAGATTGTAGAT
1 CTTATCTCCCTGAGGTAGCAAGGGAGAAGACTGAAGATTG-A-AT
*
50883400 TTTATCTCCCTGAG
1 CTTATCTCCCTGAG
50883414 ATAACAGTAG
Statistics
Matches: 299, Mismatches: 88, Indels: 52
0.68 0.20 0.12
Matches are distributed among these distances:
42 4 0.01
43 66 0.22
44 102 0.34
45 113 0.38
46 10 0.03
47 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (43 bp):
CTTATCTCCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAT
Found at i:50883537 original size:44 final size:45
Alignment explanation
Indices: 50883489--50883589 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 45
50883479 AGCCACTAGC
* * *
50883489 CTTATCTCCCTGA-GGTAGCAGGGGAGCTGACTGAAGATTGTAG-T
1 CTTATCTCCCT-ATGGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
* *
50883533 CTTATCTTCCTATGGTAGTAAGGAAGCAGACTGAAGATTGTAGAT
1 CTTATCTCCCTATGGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
*
50883578 TTTATCTCCCTA
1 CTTATCTCCCTA
50883590 AGATAATAGT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.02
44 36 0.75
45 11 0.23
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (45 bp):
CTTATCTCCCTATGGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
Found at i:50883715 original size:44 final size:45
Alignment explanation
Indices: 50883667--50883775 Score: 123
Period size: 44 Copynumber: 2.4 Consensus size: 45
50883657 AGCCACTAGC
*
50883667 CTTATCTCCCTGAGGTAACAA-GAGAGCAGGCTGAAGATTGT-AGT
1 CTTATCTCCCTGAGGTAACAAGGA-AGCAGACTGAAGATTGTCAGT
* ** * *
50883711 CTTATCTTCCTTTGGTAGCAAGGAAGCAGATTGAAGATTGTCAGT
1 CTTATCTCCCTGAGGTAACAAGGAAGCAGACTGAAGATTGTCAGT
* *
50883756 CTTATCTCCTTGAGATAACA
1 CTTATCTCCCTGAGGTAACA
50883776 GTGGAGAAGA
Statistics
Matches: 51, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
44 32 0.63
45 19 0.37
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (45 bp):
CTTATCTCCCTGAGGTAACAAGGAAGCAGACTGAAGATTGTCAGT
Found at i:50883818 original size:178 final size:178
Alignment explanation
Indices: 50882886--50883820 Score: 1210
Period size: 178 Copynumber: 5.3 Consensus size: 178
50882876 TTTGAAATAG
* * ** * *
50882886 CAGTGAAGTAGATCGAAGATAGCGAATCTTATCTTTCCGAGGTAGCAGGGGAGCAGATTTTAGCC
1 CAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCC
* * * * *
50882951 ACTAGCCTTATCTCCCTGAGATAGCAAGGGAGAAGGCTGAAGATTG-AATCTTATCTTCCCGAGG
66 ACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGTGG
* * *
50883015 TAGCAAGGAAGCACATTGAAGATTGTAGATCTAATCTCCCTGAGATAG
131 TAGCAAGGAAGCAGATTGAAGATTGTAGATCTTATCTCCCTGAGATAA
* ** * *
50883063 CAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAACAGGGGAGAAGATTTTAGCC
1 CAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCC
* * * * ** *
50883128 ACTAGCCTTATCTCCCTGAGGTAGCAAAGGAGAAGGCTAAAGATTG-AGTCTTACCTTGTTGAGG
66 ACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGTGG
* * *
50883192 TAGCAAGGAAGCAGACTGAAGATTGTAGATATTATCTCCTTGAGATAA
131 TAGCAAGGAAGCAGATTGAAGATTGTAGATCTTATCTCCCTGAGATAA
** ** * ** *
50883240 CAGTGGAGTAGATCAAAGATAGCAAATCTTATCTTCTTGAGGTAACAAAGGAGTAGATTTTAGCC
1 CAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCC
* *
50883305 ACTAGCCTTCTCTCCCTAAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGTGG
66 ACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGTGG
* * *
50883370 AAGCAAGGAAGAAGATTGAAGATTGTAGATTTTATCTCCCTGAGATAA
131 TAGCAAGGAAGCAGATTGAAGATTGTAGATCTTATCTCCCTGAGATAA
* * * * * *
50883418 CAGTAGAGTAGATCGAAGAGGGCAAATTTTATCTTCTCGAGGTAGAAGGGGAGCAGATTTTAGCC
1 CAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCC
* * * *
50883483 ACTAGCCTTATCTCCCTGAGGTAGCAGGGGAGCTGACTGAAGATTGTAGTCTTATCTTCCTATGG
66 ACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGTGG
* * * *
50883548 TAGTAAGGAAGCAGACTGAAGATTGTAGATTTTATCTCCCTAAGATAA
131 TAGCAAGGAAGCAGATTGAAGATTGTAGATCTTATCTCCCTGAGATAA
* * * ** * *
50883596 TAGTGGAGTAGATCAAAAATGGTGAATCTTATCTTCTCGAGGTAGCAGGGGAGCAAATTTTAGCC
1 CAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCC
* * *
50883661 ACTAGCCTTATCTCCCTGAGGTAACAAGAGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTTTGG
66 ACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGTGG
*
50883726 TAGCAAGGAAGCAGATTGAAGATTGTCAG-TCTTATCTCCTTGAGATAA
131 TAGCAAGGAAGCAGATTGAAGATTGT-AGATCTTATCTCCCTGAGATAA
* **
50883774 CAGTGGAGAAGATCAAAGACAACAAATCTTATCTTCCCGAGGTAGCA
1 CAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTCCCGAGGTAGCA
50883821 ATTGAATAGG
Statistics
Matches: 659, Mismatches: 97, Indels: 3
0.87 0.13 0.00
Matches are distributed among these distances:
177 252 0.38
178 405 0.61
179 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (178 bp):
CAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCC
ACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGTGG
TAGCAAGGAAGCAGATTGAAGATTGTAGATCTTATCTCCCTGAGATAA
Found at i:50886125 original size:16 final size:16
Alignment explanation
Indices: 50886095--50886134 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
50886085 TTGAACTTCA
50886095 TATTTTATTTATTATT
1 TATTTTATTTATTATT
50886111 TATTCTTATTT-TTATT
1 TATT-TTATTTATTATT
50886127 TATTTTAT
1 TATTTTAT
50886135 AATTTATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.17
16 13 0.57
17 6 0.26
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (16 bp):
TATTTTATTTATTATT
Found at i:50886140 original size:16 final size:16
Alignment explanation
Indices: 50886106--50886143 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
50886096 ATTTTATTTA
*
50886106 TTATTTATTCTTATTT
1 TTATTTATTCTTATAT
50886122 TTATTTATT-TTATAAT
1 TTATTTATTCTTAT-AT
50886138 TTATTT
1 TTATTT
50886144 CAAACTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATTCTTATAT
Found at i:50887091 original size:12 final size:13
Alignment explanation
Indices: 50887063--50887095 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50887053 TTATTTCTTT
50887063 TTCTCCATCTACC
1 TTCTCCATCTACC
*
50887076 TTCTCC-TCTTCC
1 TTCTCCATCTACC
50887088 TTCTCCAT
1 TTCTCCAT
50887096 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:50888343 original size:28 final size:29
Alignment explanation
Indices: 50888302--50888364 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
50888292 AGGAAGCGTC
*
50888302 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
50888330 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
50888359 CTGGTG
1 CTGGTG
50888365 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:50888375 original size:29 final size:28
Alignment explanation
Indices: 50888312--50888375 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
50888302 CTGGTGGCTA
* *
50888312 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
50888340 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
50888369 TGTCACA
1 TGCCACA
50888376 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:50889482 original size:11 final size:10
Alignment explanation
Indices: 50889454--50889487 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
50889444 AGCCTGTAAG
50889454 TATTCTGAAT
1 TATTCTGAAT
*
50889464 TTTTCTGAAT
1 TATTCTGAAT
50889474 ATATTCTGAAT
1 -TATTCTGAAT
50889485 TAT
1 TAT
50889488 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:50894857 original size:12 final size:13
Alignment explanation
Indices: 50894829--50894861 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50894819 TTATTTCTTT
50894829 TTCTCCATCTACC
1 TTCTCCATCTACC
*
50894842 TTCTCC-TCTTCC
1 TTCTCCATCTACC
50894854 TTCTCCAT
1 TTCTCCAT
50894862 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:50896109 original size:28 final size:28
Alignment explanation
Indices: 50896068--50896158 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
50896058 AGGAAGCGTC
50896068 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* * *
50896096 CTGGTGGCCCTGCCAAAAATTATCTATT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
50896124 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
50896153 CTGGTG
1 CTGGTG
50896159 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 47 0.87
29 7 0.13
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:50896650 original size:18 final size:18
Alignment explanation
Indices: 50896611--50896651 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
50896601 TAATAAGGCC
* *
50896611 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
50896629 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
50896647 TTTTA
1 TTTTA
50896652 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:50900906 original size:28 final size:28
Alignment explanation
Indices: 50900866--50901003 Score: 249
Period size: 28 Copynumber: 4.9 Consensus size: 28
50900856 ATATTGATAT
* *
50900866 AGATAATTGTGGTAGGGCCACCAGAAAC
1 AGATATTTGTGGTAGAGCCACCAGAAAC
50900894 AGATATTTGTGGTAGAGCCACCAGAAAC
1 AGATATTTGTGGTAGAGCCACCAGAAAC
50900922 AGATATTTGTGGTAGAGCCACCAGAAAC
1 AGATATTTGTGGTAGAGCCACCAGAAAC
50900950 AGATATTTGTGGTAGAGCCACCAGAAAC
1 AGATATTTGTGGTAGAGCCACCAGAAAC
*
50900978 AGATATTTGTGGCAGAGCCACCAGAA
1 AGATATTTGTGGTAGAGCCACCAGAA
50901004 CGCTTCCTCC
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 107 1.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (28 bp):
AGATATTTGTGGTAGAGCCACCAGAAAC
Found at i:50903255 original size:9 final size:9
Alignment explanation
Indices: 50903241--50903270 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
50903231 TAAACATATG
50903241 TAATAACAA
1 TAATAACAA
*
50903250 TAATAATAA
1 TAATAACAA
50903259 TAATAACAA
1 TAATAACAA
50903268 TAA
1 TAA
50903271 CATTAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (9 bp):
TAATAACAA
Found at i:50908895 original size:30 final size:30
Alignment explanation
Indices: 50908859--50908918 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50908849 TTCCAGAGCC
*
50908859 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
50908889 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
50908919 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:50909372 original size:46 final size:46
Alignment explanation
Indices: 50909319--50909494 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 46
50909309 TATTTGGGCA
50909319 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
* * * * *
50909365 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-T--G
*
50909410 CATCCGAACTCGTTGAGTTGAGTC-GTAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCTG-AGTTCACTTATGGATGCGAATG
* * *
50909458 CCCGAGCTCGTTGAGTTGAGT-TCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCT-GAGTTCACTTATGG
50909495 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
Found at i:50909474 original size:93 final size:93
Alignment explanation
Indices: 50909315--50909487 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
50909305 CGGATATTTG
* *
50909315 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50909380 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
*
50909408 GGCATCCGAACTCGTTGAGTTGAGTC-GTAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCTG-AGTTCACTTATGGATGCGAACGCCCGAACTCGTTGA
*
50909472 GTTGAGTTCGAGTTCG
65 GTTGAGTCCGAGTTCG
50909488 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:50914632 original size:47 final size:48
Alignment explanation
Indices: 50914569--50914696 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 48
50914559 TTATGAGAGT
*
50914569 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT-TGA-AGTGAGTGC
1 TAGTGTAAGACCATGTCT-GGACATGGCATCGGCATACGAGA-TGAGTGC
* * **
50914617 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-TACGAGATGATTTT
1 TAGTGTAAGACCATGTCT-GGACATGGCATCGGCATACGAGATGAGTGC
50914663 TAGTGTAAGACCATGTCTGGACATGGCATCGGCA
1 TAGTGTAAGACCATGTCTGGACATGGCATCGGCA
50914697 CCTTACCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 1 0.01
46 29 0.43
47 28 0.41
48 10 0.15
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGACATGGCATCGGCATACGAGATGAGTGC
Found at i:50919829 original size:60 final size:59
Alignment explanation
Indices: 50919752--50919892 Score: 171
Period size: 60 Copynumber: 2.4 Consensus size: 59
50919742 TTTAGTGTTA
*
50919752 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCT-TAC-AGTAAC-AGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAG-CCCTATACAAGT--CGAGA-TAT
* *
50919813 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATACAAGTCGAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
* *
50919872 ATTGGGCCTTGCCCATATCAA
1 ACTGGGCCTAGCCCATATCAA
50919893 CATAGTTGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
59 26 0.37
60 34 0.48
61 11 0.15
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
Found at i:50928191 original size:47 final size:48
Alignment explanation
Indices: 50928139--50928303 Score: 176
Period size: 47 Copynumber: 3.5 Consensus size: 48
50928129 TCGTTGGACC
* * *
50928139 ATGGCAAC-ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCT
1 ATGGCATCGATGTGATATGTGATTTCCGTATAAGACCATATCTGGGAT
* * *
50928186 ATGGCATCGGTGTGATATGAGA-TTCCTTATAAGACCATATCTGGGAT
1 ATGGCATCGATGTGATATGTGATTTCCGTATAAGACCATATCTGGGAT
* * * * **
50928233 ATGGCGTCGGTGTGATATGTG-CTTCTGTGCAAGACCATATCTGGGAT
1 ATGGCATCGATGTGATATGTGATTTCCGTATAAGACCATATCTGGGAT
*
50928280 ATGGCATC-AGTATGATATGTGATT
1 ATGGCATCGA-TGTGATATGTGATT
50928304 CGTGTAAGAT
Statistics
Matches: 98, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
47 86 0.88
48 12 0.12
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGGCATCGATGTGATATGTGATTTCCGTATAAGACCATATCTGGGAT
Found at i:50928283 original size:94 final size:95
Alignment explanation
Indices: 50928169--50928367 Score: 233
Period size: 94 Copynumber: 2.1 Consensus size: 95
50928159 ATTTCCGTAT
* * * * * *
50928169 AAGACCATAGCTGGGCTATGGCATCGGTGTGATATGAGATTCCTTATAAGACCATATCTGGGATA
1 AAGACCATAGCTGGGATATGGCATCAGTATGATATGAGATT-CGTATAAGACCATAGCTAGGATA
*
50928234 TGGCGTC-G-GTGTGATATGTG-CTTCTGTGC
65 TGGCGTCAGTGTGTGATATGTGAC-TATGTGC
* * * * * *
50928263 AAGACCATATCTGGGATATGGCATCAGTATGATATGTGATTCGTGTAAGATCGTGGCTAGGATAT
1 AAGACCATAGCTGGGATATGGCATCAGTATGATATGAGATTCGTATAAGACCATAGCTAGGATAT
*
50928328 GGCTTCAGTGTGTGATATGTGACTATGTGC
66 GGCGTCAGTGTGTGATATGTGACTATGTGC
50928358 AAGACCATAG
1 AAGACCATAG
50928368 TTTTACTATG
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
93 22 0.25
94 37 0.43
95 27 0.31
96 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (95 bp):
AAGACCATAGCTGGGATATGGCATCAGTATGATATGAGATTCGTATAAGACCATAGCTAGGATAT
GGCGTCAGTGTGTGATATGTGACTATGTGC
Found at i:50930744 original size:48 final size:48
Alignment explanation
Indices: 50930684--50930783 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 48
50930674 GAGACTATTC
* *
50930684 TTATGTTCCTACTGGTTATGGTTTTGTTTTATACATGCGGGAAATATA
1 TTATGTTCCTACTAGTTATGGTTTTGTTTTATACATGCGAGAAATATA
*
50930732 TTATGTTTCTACTAGTTATGGTTTTGTTTTATACATGCGAGAAATATA
1 TTATGTTCCTACTAGTTATGGTTTTGTTTTATACATGCGAGAAATATA
50930780 TTAT
1 TTAT
50930784 CTCTGTTATG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.25, C:0.09, G:0.18, T:0.48
Consensus pattern (48 bp):
TTATGTTCCTACTAGTTATGGTTTTGTTTTATACATGCGAGAAATATA
Found at i:50933231 original size:28 final size:27
Alignment explanation
Indices: 50933200--50933262 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
50933190 AATTACTAGA
*
50933200 ATACCCCTAAGTATGGAAAATTACCATT
1 ATACCCCTAAG-ATGGAAAATGACCATT
* *
50933228 ATACCCCT-AGGTGTAAAATGACCATT
1 ATACCCCTAAGATGGAAAATGACCATT
50933254 ATACCCCTA
1 ATACCCCTA
50933263 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 21 0.68
27 2 0.06
28 8 0.26
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGGAAAATGACCATT
Found at i:50933410 original size:27 final size:27
Alignment explanation
Indices: 50933370--50933454 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
50933360 AGGAAGCGTC
50933370 CTGGTGGCTATGCCACAATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGTT
* *
50933397 CTGGTGGCTCTGCCACAAATATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTGT-T
* * * *
50933425 CTTGTGACTATGTCAC-ATTATTTGTT
1 CTGGTGGCTATGCCACAATTATCTGTT
50933451 CTGG
1 CTGG
50933455 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.08
27 31 0.65
28 13 0.27
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGTT
Found at i:50939975 original size:18 final size:18
Alignment explanation
Indices: 50939931--50939984 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
50939921 CCCTCACTTT
* * *
50939931 TTCTTTTCTCCTCTCATC
1 TTCTTTTCTCTTTTCTTC
* *
50939949 TCCTATTCTCTTTTCTTC
1 TTCTTTTCTCTTTTCTTC
50939967 TTCTTTTCT-TTTTCTTC
1 TTCTTTTCTCTTTTCTTC
50939984 T
1 T
50939985 ATAGTCGAAC
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 9 0.31
18 20 0.69
ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65
Consensus pattern (18 bp):
TTCTTTTCTCTTTTCTTC
Found at i:50941238 original size:27 final size:27
Alignment explanation
Indices: 50941198--50941282 Score: 109
Period size: 27 Copynumber: 3.1 Consensus size: 27
50941188 AGGAAGCGTC
50941198 CTGGTGGCTATGCCACAATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGTT
* *
50941225 CTGGTGGCTCTGCCACAAATATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTGT-T
* * *
50941253 CTAGTGACTATGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGTT
50941279 CTGG
1 CTGG
50941283 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.08
27 32 0.65
28 13 0.27
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGTT
Found at i:50943488 original size:46 final size:46
Alignment explanation
Indices: 50943406--50943503 Score: 117
Period size: 46 Copynumber: 2.1 Consensus size: 46
50943396 GATTTCCATA
* * * * *
50943406 TAAGACCATAGCTAGGCTATGGTATCGGTGTGATATGTGCTTCTGTG
1 TAAGACCATAGCTAGGCAATGGCATCAGTGTGATATGTG-ATCCGTG
* *
50943453 TAAGACCATATCT-GGGAATGGCATCAGTGTGATATGTGATCCGTG
1 TAAGACCATAGCTAGGCAATGGCATCAGTGTGATATGTGATCCGTG
50943498 TAAGAC
1 TAAGAC
50943504 TGTGGCCGGG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 11 0.25
46 21 0.48
47 12 0.27
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (46 bp):
TAAGACCATAGCTAGGCAATGGCATCAGTGTGATATGTGATCCGTG
Found at i:50944926 original size:43 final size:43
Alignment explanation
Indices: 50944829--50944980 Score: 148
Period size: 43 Copynumber: 3.5 Consensus size: 43
50944819 ACCGAGATGT
* * *
50944829 GATTACATGTACGACCATGTCTGGGACATTGGCATTGTATTAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTAC
*
50944872 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTAC
* * ** * *
50944915 GATTTCATGTAAGACCCTGTCTATGACAGTGGCATCAATATGTA-
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATC-GTAT-TAC
* *
50944959 -ATAACATGTAAGACCATATCTG
1 GATTACATGTAAGACCATGTCTG
50944981 AGATATGGCA
Statistics
Matches: 89, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
43 84 0.94
44 5 0.06
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTAC
Found at i:50961605 original size:40 final size:40
Alignment explanation
Indices: 50961561--50961636 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
50961551 CGGCTAAGAA
*
50961561 TGGCACTTAGTGTGCGGTTTGAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTAAATG
* *
50961601 TGGCACTTGGTGTGCGATTTGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTA
50961637 TATATATGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTAAATG
Found at i:50961722 original size:28 final size:28
Alignment explanation
Indices: 50961649--50961723 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 28
50961639 TATATGTATG
* * * *
50961649 TGGCACTTAGTGTGTGAAATGTTGAGAA
1 TGGCACTTAGTGTGCGAGATATTAAGAA
* *
50961677 TGGCACTTGGTGTGCGAGATATTAAGTA
1 TGGCACTTAGTGTGCGAGATATTAAGAA
*
50961705 TGGCACGTAGTGTGCGAGA
1 TGGCACTTAGTGTGCGAGA
50961724 CATCGAAGAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.11, G:0.35, T:0.29
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTAAGAA
Found at i:50964334 original size:37 final size:37
Alignment explanation
Indices: 50964277--50964405 Score: 192
Period size: 37 Copynumber: 3.5 Consensus size: 37
50964267 GGCAATACAT
50964277 GTGATA-CGTGTAAGACCATAGCTGGGCTATGGCATC
1 GTGATAGCGTGTAAGACCATAGCTGGGCTATGGCATC
* *
50964313 GTAATAGTGTGTAAGACCATAGCTGGGCTATGGCATC
1 GTGATAGCGTGTAAGACCATAGCTGGGCTATGGCATC
* *
50964350 GTGAT-GACATGTAAGACCATAGCTGGGCTATGGCATT
1 GTGATAG-CGTGTAAGACCATAGCTGGGCTATGGCATC
50964387 GTGATA-CGTGTAAGACCAT
1 GTGATAGCGTGTAAGACCAT
50964406 GTCTAGGACA
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
36 18 0.22
37 65 0.78
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (37 bp):
GTGATAGCGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:50964614 original size:84 final size:83
Alignment explanation
Indices: 50964391--50964639 Score: 205
Period size: 84 Copynumber: 2.9 Consensus size: 83
50964381 GGCATTGTGA
* * * *
50964391 TACGTGTAAGACCATGTCTAGGACATGGCATCAATATGAGATCCTGTGTAAGACCATGTCTGGGA
1 TACGTATAAGACCATGTCTAGGACATGGCATCGATATGAGA-CATGTGTAAGACCGTGTCTGGG-
*
50964456 TATCGCATCGGCATCGATATGAGAT
64 -AT---A-CGGCATCAATATGAGAT
* * * * * * * **
50964481 TACGTGTAAGACTATATCT-GAGATATTGCTTCGGTATGAGATTTTGTGTAAGACCGTGTCTGGG
1 TACGTATAAGACCATGTCTAG-GACATGGCATCGATATGAGA-CATGTGTAAGACCGTGTCTGGG
*
50964545 ATACGGCATCAATATGTGAT
64 ATACGGCATCAATATGAGAT
* * * *
50964565 TTCGTATAAGACCATGTCTAGGACATGGCATCGATGTGAGACATCGTGTAAGATCGTAGT-TGGA
1 TACGTATAAGACCATGTCTAGGACATGGCATCGATATGAGACAT-GTGTAAGACCGT-GTCTGGG
*
50964629 ATATGGCATCA
64 ATACGGCATCA
50964640 TGTAAATGAC
Statistics
Matches: 129, Mismatches: 26, Indels: 14
0.76 0.15 0.08
Matches are distributed among these distances:
83 1 0.01
84 69 0.53
85 4 0.03
88 2 0.02
89 1 0.01
90 52 0.40
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (83 bp):
TACGTATAAGACCATGTCTAGGACATGGCATCGATATGAGACATGTGTAAGACCGTGTCTGGGAT
ACGGCATCAATATGAGAT
Done.