Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 161 of 325
Found at i:50964617 original size:42 final size:42
Alignment explanation
Indices: 50964393--50964617 Score: 159
Period size: 42 Copynumber: 5.2 Consensus size: 42
50964383 CATTGTGATA
* *
50964393 CGTGTAAGACCATGTCTAGGACATGGCATCAATATGAGA-TC
1 CGTGTAAGACCATGTCTAGGACATGGCATCGATATGAGACTT
*
50964434 CTGTGTAAGACCATGTCTGGGATATCGCATCGGCATCGATATGAGA-TT
1 C-GTGTAAGACCATGTCTAGG--A---CAT-GGCATCGATATGAGACTT
* * * * * * *
50964482 ACGTGTAAGACTATATCT-GAGATATTGCTTCGGTATGAGATTT
1 -CGTGTAAGACCATGTCTAG-GACATGGCATCGATATGAGACTT
* * * * * * * *
50964525 TGTGTAAGACCGTGTCTGGGATACGGCATCAATATGTGATTT
1 CGTGTAAGACCATGTCTAGGACATGGCATCGATATGAGACTT
* * *
50964567 CGTATAAGACCATGTCTAGGACATGGCATCGATGTGAGACAT
1 CGTGTAAGACCATGTCTAGGACATGGCATCGATATGAGACTT
50964609 CGTGTAAGA
1 CGTGTAAGA
50964618 TCGTAGTTGG
Statistics
Matches: 142, Mismatches: 31, Indels: 21
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 99 0.70
43 5 0.04
44 1 0.01
46 1 0.01
47 4 0.03
48 30 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTAGGACATGGCATCGATATGAGACTT
Found at i:50968476 original size:44 final size:41
Alignment explanation
Indices: 50968376--50968476 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 41
50968366 CGGCTAAGAA
50968376 TGGCACTTAGTGTGC-AGTTTGAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTGCGAGTTTGAAATAGCTTCGGCTAAATG
* * *
50968416 TGGAACTTGGTGTGCGA-TTTGAGATAGCTTCGGCTATATATATG
1 TGGCACTTAGTGTGCGAGTTTGAAATAGCTTCGGC--TA-A-ATG
50968460 TGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
50968477 AATATTGAGA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 29 0.57
41 1 0.02
42 2 0.04
43 1 0.02
44 18 0.35
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.34
Consensus pattern (41 bp):
TGGCACTTAGTGTGCGAGTTTGAAATAGCTTCGGCTAAATG
Found at i:50968491 original size:28 final size:28
Alignment explanation
Indices: 50968460--50968562 Score: 161
Period size: 28 Copynumber: 3.7 Consensus size: 28
50968450 TATATATATG
* * *
50968460 TGGCACTTAGTGTGCGAAATATTGAGAA
1 TGGCACTTGGTGTGCGAGATATTGAGTA
50968488 TGGCACTTGGTGTGCGAGATATTGAGTA
1 TGGCACTTGGTGTGCGAGATATTGAGTA
50968516 TGGCACTTGGTGTGCGAGATATTGAGTA
1 TGGCACTTGGTGTGCGAGATATTGAGTA
* *
50968544 TGGCACTTTGTGTGTGAGA
1 TGGCACTTGGTGTGCGAGA
50968563 CATCGAAGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.23, C:0.11, G:0.34, T:0.32
Consensus pattern (28 bp):
TGGCACTTGGTGTGCGAGATATTGAGTA
Found at i:50981965 original size:41 final size:41
Alignment explanation
Indices: 50981903--50981982 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
50981893 TAAAAGCCAC
* *
50981903 CGGTGGATCCACGGTCATCAAGCAACCATGCAATCCTCAAT
1 CGGTGAATCCACGATCATCAAGCAACCATGCAATCCTCAAT
* *
50981944 CGGTGAATCCACGATCGTCAAGCAACCATGCGATCCTCA
1 CGGTGAATCCACGATCATCAAGCAACCATGCAATCCTCA
50981983 TATACTTCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.19
Consensus pattern (41 bp):
CGGTGAATCCACGATCATCAAGCAACCATGCAATCCTCAAT
Found at i:50982286 original size:27 final size:26
Alignment explanation
Indices: 50982255--50982573 Score: 161
Period size: 27 Copynumber: 11.8 Consensus size: 26
50982245 AACTAAGGGT
* * *
50982255 ATTTTGATACCAATGGTATTTCTGTA
1 ATTTTGAAATCAAGGGTATTTCTGTA
*
50982281 AGTTTTAAAAGTCAAGGGTATTTCTGTA
1 A-TTTTGAAA-TCAAGGGTATTTCTGTA
*
50982309 ATTTTGTAAATTAAGGGTATTTCTGTA
1 ATTTTG-AAATCAAGGGTATTTCTGTA
* * *
50982336 ATTTTCCAAATTAAGGGTATTTCAGTA
1 ATTTT-GAAATCAAGGGTATTTCTGTA
*
50982363 ATTTTCCAAATCAAGGGTATTTC-GATA
1 ATTTT-GAAATCAAGGGTATTTCTG-TA
* * *
50982390 ATTTTCCAAGTCAAAGGTATTT-TGGTA
1 ATTTT-GAAATCAAGGGTATTTCT-GTA
* *
50982417 ATTTTACAAATTGAA-GGTATTTC-GATA
1 ATTTT-GAAA-TCAAGGGTATTTCTG-TA
* * *
50982444 ATTTT-ACAGGTCGAGGGTATTTCAGTA
1 ATTTTGA-A-ATCAAGGGTATTTCTGTA
* * *
50982471 ATTTTACAAATTAGGGGTATTT-TGGTA
1 ATTTT-GAAATCAAGGGTATTTCT-GTA
*
50982498 ATTTT-ACAAACTAAGGGTATTT-TGGTA
1 ATTTTGA-AATC-AAGGGTATTTCT-GTA
** *
50982525 ATTTTTCTAATCGAGGGTATTT-TGGTA
1 A-TTTTGAAATCAAGGGTATTTCT-GTA
*
50982552 ATTTTGTAAACCAAGGGTATTT
1 ATTTTG-AAATCAAGGGTATTT
50982574 AGTAATTCTA
Statistics
Matches: 239, Mismatches: 32, Indels: 43
0.76 0.10 0.14
Matches are distributed among these distances:
25 2 0.01
26 12 0.05
27 192 0.80
28 32 0.13
29 1 0.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (26 bp):
ATTTTGAAATCAAGGGTATTTCTGTA
Found at i:50982354 original size:54 final size:54
Alignment explanation
Indices: 50982269--50982573 Score: 259
Period size: 54 Copynumber: 5.6 Consensus size: 54
50982259 TGATACCAAT
**
50982269 GGTATTTCTGTAAGTTTTA-AAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAAG
1 GGTATTTCTGTAA-TTTTACAAA-TCAAGGGTATTTCTGTAATTTTACAAATTAAG
* * * * *
50982324 GGTATTTCTGTAATTTTCCAAATTAAGGGTATTTCAGTAATTTTCCAAATCAAG
1 GGTATTTCTGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATTAAG
* * *
50982378 GGTATTTC-GATAATTTTCCAAGTCAAAGGTATTT-TGGTAATTTTACAAATTGAA-
1 GGTATTTCTG-TAATTTTACAAATCAAGGGTATTTCT-GTAATTTTACAAATT-AAG
** * * *
50982432 GGTATTTC-GATAATTTTACAGGTCGAGGGTATTTCAGTAATTTTACAAATTAGG
1 GGTATTTCTG-TAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATTAAG
* * **
50982486 GGTATTT-TGGTAATTTTACAAA-CTAAGGGTATTT-TGGTAATTTTTCTAATCGAG
1 GGTATTTCT-GTAATTTTACAAATC-AAGGGTATTTCT-GTAATTTTACAAATTAAG
** *
50982540 GGTATTT-TGGTAATTTTGTAAACCAAGGGTATTT
1 GGTATTTCT-GTAATTTTACAAATCAAGGGTATTT
50982574 AGTAATTCTA
Statistics
Matches: 210, Mismatches: 29, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
53 3 0.01
54 187 0.89
55 20 0.10
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (54 bp):
GGTATTTCTGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATTAAG
Found at i:50982377 original size:81 final size:79
Alignment explanation
Indices: 50982269--50982573 Score: 285
Period size: 81 Copynumber: 3.7 Consensus size: 79
50982259 TGATACCAAT
* * *
50982269 GGTATTTCTGTAAGTTTTAAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAAGGGTATTTCT-
1 GGTATTTC-GTAA-TTTTCAAA-TCAAGGGTATTTCTGTAATTTTGCAAATCAAGGGTATTT-TG
*
50982333 GTAATTTTCCAAATTAAG
62 GTAATTTTACAAATTAAG
* * *
50982351 GGTATTTCAGTAATTTTCCAAATCAAGGGTATTTC-GATAATTTTCCAAGTCAAAGGTATTTTGG
1 GGTATTTC-GTAATTTT-CAAATCAAGGGTATTTCTG-TAATTTTGCAAATCAAGGGTATTTTGG
50982415 TAATTTTACAAATTGAA-
63 TAATTTTACAAATT-AAG
** * * * * *
50982432 GGTATTTCGATAATTTTACAGGTCGAGGGTATTTCAGTAATTTTACAAATTAGGGGTATTTTGGT
1 GGTATTTCG-TAATTTT-CAAATCAAGGGTATTTCTGTAATTTTGCAAATCAAGGGTATTTTGGT
*
50982497 AATTTTACAAACTAAG
64 AATTTTACAAATTAAG
* * * * *
50982513 GGTATTTTGGTAATTTTTCTAATCGAGGGTATTT-TGGTAATTTTGTAAACCAAGGGTATTT
1 GGTA-TTTCGTAA-TTTTCAAATCAAGGGTATTTCT-GTAATTTTGCAAATCAAGGGTATTT
50982574 AGTAATTCTA
Statistics
Matches: 185, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
80 5 0.03
81 154 0.83
82 26 0.14
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (79 bp):
GGTATTTCGTAATTTTCAAATCAAGGGTATTTCTGTAATTTTGCAAATCAAGGGTATTTTGGTAA
TTTTACAAATTAAG
Found at i:50982606 original size:27 final size:27
Alignment explanation
Indices: 50982570--50982672 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
50982560 AACCAAGGGT
50982570 ATTT-AGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
50982596 ATTTCAGTAATTCTATCCTACAAGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
50982623 ATTTTAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
50982650 ATTTCAGTAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
50982673 ATATGAGATT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 4 0.06
27 63 0.94
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:50982636 original size:54 final size:53
Alignment explanation
Indices: 50982563--50982671 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 53
50982553 TTTTGTAAAC
* * *
50982563 CAAGGGTATTTAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTATCCTA
1 CAAGGGCATTTAGTAATTCTACCCTACAGGGGCATTTCAGTAATACTAGCCTA
*
50982616 CAAGGGCATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATACTAGCCTA
1 CAAGGGCA-TTTAGTAATTCTACCCTACAGGGGCATTTCAGTAATACTAGCCTA
50982670 CA
1 CA
50982672 GATATGAGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.14
54 44 0.86
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (53 bp):
CAAGGGCATTTAGTAATTCTACCCTACAGGGGCATTTCAGTAATACTAGCCTA
Found at i:50992951 original size:22 final size:23
Alignment explanation
Indices: 50992912--50992954 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
50992902 TTAAACTAAA
*
50992912 TTCTTTTTTATTTCTTTTAATAT
1 TTCTTTTTTATTTATTTTAATAT
50992935 TTCTTTTTT-TTTATTTTAAT
1 TTCTTTTTTATTTATTTTAAT
50992955 TGTAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (23 bp):
TTCTTTTTTATTTATTTTAATAT
Found at i:50995551 original size:11 final size:11
Alignment explanation
Indices: 50995535--50995559 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50995525 AAATGTTTAG
50995535 GTATATAATAT
1 GTATATAATAT
50995546 GTATATAATAT
1 GTATATAATAT
50995557 GTA
1 GTA
50995560 CATGATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (11 bp):
GTATATAATAT
Found at i:50996214 original size:26 final size:26
Alignment explanation
Indices: 50996178--50996237 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
50996168 TTTCTCGAAT
*
50996178 CGAGTCGAGTGAGATGGAATTCAAAA
1 CGAGTCGAGTGAGATGAAATTCAAAA
*
50996204 CGAGTCGAGTGAGATGAAATTCAAAT
1 CGAGTCGAGTGAGATGAAATTCAAAA
*
50996230 CGAATCGA
1 CGAGTCGA
50996238 ATCGAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.20
Consensus pattern (26 bp):
CGAGTCGAGTGAGATGAAATTCAAAA
Found at i:50997344 original size:19 final size:19
Alignment explanation
Indices: 50997320--50997356 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50997310 AAAATTGGAG
* *
50997320 TTTGGGGGGAAGTAAAAGT
1 TTTGGGGGAAAGCAAAAGT
50997339 TTTGGGGGAAAGCAAAAG
1 TTTGGGGGAAAGCAAAAG
50997357 GAAAAAAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.41, T:0.22
Consensus pattern (19 bp):
TTTGGGGGAAAGCAAAAGT
Found at i:50997367 original size:27 final size:28
Alignment explanation
Indices: 50997333--50997391 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
50997323 GGGGGGAAGT
50997333 AAAAGTTTTGGGG-GAAAGCAAAAGGAA
1 AAAAGTTTTGGGGAGAAAGCAAAAGGAA
*
50997360 AAAAGTTTTGGGGAGAAAGTAAAAGGAA
1 AAAAGTTTTGGGGAGAAAGCAAAAGGAA
50997388 AAAA
1 AAAA
50997392 AATTTGTGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 13 0.43
28 17 0.57
ACGTcount: A:0.53, C:0.02, G:0.31, T:0.15
Consensus pattern (28 bp):
AAAAGTTTTGGGGAGAAAGCAAAAGGAA
Found at i:50997397 original size:28 final size:27
Alignment explanation
Indices: 50997339--50997397 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
50997329 AAGTAAAAGT
**
50997339 TTTGGGGGAAAGCAAAAGGAAAAAAGT
1 TTTGGGGGAAAGCAAAAGGAAAAAAAA
*
50997366 TTTGGGGAGAAAGTAAAAGGAAAAAAAA
1 TTTGGGG-GAAAGCAAAAGGAAAAAAAA
50997394 TTTG
1 TTTG
50997398 TGGGTTTGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 7 0.25
28 21 0.75
ACGTcount: A:0.49, C:0.02, G:0.31, T:0.19
Consensus pattern (27 bp):
TTTGGGGGAAAGCAAAAGGAAAAAAAA
Found at i:50997445 original size:82 final size:78
Alignment explanation
Indices: 50997305--50997464 Score: 221
Period size: 82 Copynumber: 2.0 Consensus size: 78
50997295 ACATAAATTT
* *
50997305 GAAAAAAAATTGGAGTTTGGGGGGAAGTAAAAGTTTTGGGGGAAAGCAAAAGGAAAAAAGTTTTG
1 GAAAAAAAATTGGAGTTTGGAGGGAAGTAAAAGTTTTGGGGGAAAACAAAAGGAAAAAAGTTTT-
50997370 GGGAGAAAGTAAAAG
65 GGG-GAAAGTAAAAG
* * *
50997385 GAAAAAAAATTTGTGGGTTTGGAGGGAAGTAACAGTTTTGGGGAGAAAATAAAAGGAAAAAAGTT
1 GAAAAAAAA-TTG-GAGTTTGGAGGGAAGTAAAAGTTTTGGGG-GAAAACAAAAGGAAAAAAGTT
*
50997450 TTGTGGAAAGTAAAA
63 TTGGGGAAAGTAAAA
50997465 TTTTTAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
80 9 0.13
81 13 0.18
82 28 0.39
83 21 0.30
ACGTcount: A:0.45, C:0.01, G:0.33, T:0.21
Consensus pattern (78 bp):
GAAAAAAAATTGGAGTTTGGAGGGAAGTAAAAGTTTTGGGGGAAAACAAAAGGAAAAAAGTTTTG
GGGAAAGTAAAAG
Found at i:50997541 original size:27 final size:29
Alignment explanation
Indices: 50997511--50997579 Score: 90
Period size: 27 Copynumber: 2.4 Consensus size: 29
50997501 AAGGGGAAGT
*
50997511 AAAAGTTTTAGGG-AGAAAGTAAAA-GAA
1 AAAAGTTTTAGGGAAGAAAATAAAAGGAA
*
50997538 AAAAGTCTT-GGGAAGAAAATAAAAGGAA
1 AAAAGTTTTAGGGAAGAAAATAAAAGGAA
50997566 AAAAGTTTTGAGGG
1 AAAAGTTTT-AGGG
50997580 TTTAGGGGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.09
27 18 0.51
28 11 0.31
30 3 0.09
ACGTcount: A:0.52, C:0.01, G:0.28, T:0.19
Consensus pattern (29 bp):
AAAAGTTTTAGGGAAGAAAATAAAAGGAA
Found at i:50997968 original size:16 final size:16
Alignment explanation
Indices: 50997944--50997984 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
50997934 ACGTTTGGTT
*
50997944 GGCTATAATGAAATAG
1 GGCTGTAATGAAATAG
*
50997960 GGCTGTAATGGAATAG
1 GGCTGTAATGAAATAG
*
50997976 AGCTGTAAT
1 GGCTGTAAT
50997985 AAGTAATTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.37, C:0.07, G:0.29, T:0.27
Consensus pattern (16 bp):
GGCTGTAATGAAATAG
Found at i:50998321 original size:16 final size:17
Alignment explanation
Indices: 50998286--50998331 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
50998276 TTAAAAAATC
50998286 AAAATATATAATACTATA
1 AAAATATAT-ATACTATA
*
50998304 AAAAAATATATA-TATA
1 AAAATATATATACTATA
*
50998320 AATATATATATA
1 AAAATATATATA
50998332 ATACAAGCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 3 0.12
18 8 0.32
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATATATATACTATA
Found at i:50998322 original size:12 final size:12
Alignment explanation
Indices: 50998289--50998332 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
50998279 AAAAATCAAA
50998289 ATATAT-AATACT
1 ATATATAAATA-T
* *
50998301 ATAAAAAAATAT
1 ATATATAAATAT
50998313 ATATATAAATAT
1 ATATATAAATAT
50998325 ATATATAA
1 ATATATAA
50998333 TACAAGCAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 23 0.85
13 4 0.15
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (12 bp):
ATATATAAATAT
Found at i:50998325 original size:22 final size:20
Alignment explanation
Indices: 50998286--50998325 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
50998276 TTAAAAAATC
*
50998286 AAAATATATAATACTATAAA
1 AAAATATATAATAATATAAA
50998306 AAAATATATATATAAATATA
1 AAAATATATA-AT-AATATA
50998326 TATATAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 2 0.12
22 5 0.29
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATATATAATAATATAAA
Found at i:51003017 original size:40 final size:40
Alignment explanation
Indices: 51002960--51003175 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
51002950 CGGATGATAA
* *
51002960 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
51003000 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51003040 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51003080 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51003120 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
51003160 -C-GGCTAAAT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51003176 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 10, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
37 7 0.04
38 7 0.04
39 3 0.02
40 146 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51015077 original size:12 final size:12
Alignment explanation
Indices: 51015060--51015084 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51015050 ATGTAAGTGA
51015060 TCTTGATGATTT
1 TCTTGATGATTT
51015072 TCTTGATGATTT
1 TCTTGATGATTT
51015084 T
1 T
51015085 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:51016013 original size:50 final size:49
Alignment explanation
Indices: 51015804--51016070 Score: 204
Period size: 50 Copynumber: 5.6 Consensus size: 49
51015794 TTTGTGTGCC
* *
51015804 AGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGA--CAAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACA-TGAGACGCAAGAGCT
* * * * * *
51015852 AGTGTAAGA-CATGTCCGGGACAT-ACATCAACCTCGAGACG-TA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACAT-GAGACGCAAGAGCT
* * * *
51015898 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTATGAGA--CATG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATGAGACGCAAGAGCT
* * * *
51015942 AGTATAA-ACCATGTCTAGGACATGGCATTGACATGGATACGCAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACAT-GAGACGCAAGAGCT
*
51015991 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACATAAGTACG--AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACATGAG-ACGCAAGAGCT
*
51016041 AGTGTAATACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
51016071 AGCAACTTAA
Statistics
Matches: 173, Mismatches: 29, Indels: 32
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.01
44 21 0.12
45 12 0.07
46 42 0.24
47 17 0.10
48 10 0.06
49 6 0.03
50 55 0.32
51 2 0.01
52 7 0.04
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATGAGACGCAAGAGCT
Found at i:51024817 original size:33 final size:33
Alignment explanation
Indices: 51024774--51024843 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
51024764 AATTAGCATA
51024774 ATTATAATCAAGTATTTTAGGCTTAGCTTACTC
1 ATTATAATCAAGTATTTTAGGCTTAGCTTACTC
*
51024807 ATTATCATCAAGTATTTTAGGCTTAGCTTACTC
1 ATTATAATCAAGTATTTTAGGCTTAGCTTACTC
51024840 ATTA
1 ATTA
51024844 GCATTCTTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (33 bp):
ATTATAATCAAGTATTTTAGGCTTAGCTTACTC
Found at i:51027247 original size:31 final size:31
Alignment explanation
Indices: 51027203--51027281 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
51027193 TTTAACGGTT
* * *
51027203 ACTGGACCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTAATAAATCATATC
51027234 ACTGGGCCGAAGCCTTTTAATAAATCATATC
1 ACTGGGCCGAAGCCTTTTAATAAATCATATC
*
51027265 ACTCGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
51027282 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTAATAAATCATATC
Found at i:51027352 original size:42 final size:42
Alignment explanation
Indices: 51027305--51027396 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
51027295 TGGCCCTTAG
* ** *
51027305 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
51027347 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
51027389 GCCCATTT
1 GCCCATTT
51027397 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:51027558 original size:24 final size:24
Alignment explanation
Indices: 51027531--51027614 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 24
51027521 ATGGAGGCCT
*
51027531 AGCCTCTTTTAAT-AACTTGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
* *
51027555 AGCCCTTTCTGATAAACTGGGGCAG
1 AGCCCTTT-TAATAAACTGGGGCAA
** * *
51027580 AGCCCTTTTCGGTAAATTGGGGCAG
1 AGCCCTTTT-AATAAACTGGGGCAA
51027605 AGCCCTTTTA
1 AGCCCTTTTA
51027615 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 4 0.08
24 8 0.16
25 39 0.76
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:51027578 original size:25 final size:25
Alignment explanation
Indices: 51027544--51027613 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
51027534 CTCTTTTAAT
* *
51027544 AACTTGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
*
51027569 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTTCGATA
*
51027594 AATTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
51027614 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:51028545 original size:27 final size:27
Alignment explanation
Indices: 51028515--51028623 Score: 78
Period size: 27 Copynumber: 3.9 Consensus size: 27
51028505 GTAAATCTAC
51028515 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
** *
51028542 AAACCAATAGTATTCCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
51028568 AAAAAAGTCAAGGGTATTTCTGTAATTTTGT
1 ---AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
51028599 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
51028624 ACAAATTGAG
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
26 1 0.02
27 39 0.61
28 4 0.06
29 3 0.05
30 16 0.25
31 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:51028629 original size:27 final size:27
Alignment explanation
Indices: 51028579--51028678 Score: 80
Period size: 27 Copynumber: 3.7 Consensus size: 27
51028569 AAAAAGTCAA
**
51028579 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAATCAG
*
51028606 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTTACAAATCAG
*** *
51028632 AGGGTATTTCAATAATTTCT-CAAACCAG
1 -GGGTATTTTGGTAATTT-TACAAATCAG
*
51028660 TGGTATTTTGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
51028679 TCCTACAAGG
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
26 3 0.05
27 51 0.91
28 2 0.04
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAG
Found at i:51028746 original size:27 final size:27
Alignment explanation
Indices: 51028707--51028774 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
51028697 GTAATTTCAC
*
51028707 AATCGAGGATAAAATAGAAATTTTGTA
1 AATCGAGGGTAAAATAGAAATTTTGTA
* * *
51028734 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATAGAAATTTTGTA
51028761 AATCGAGGGTAAAA
1 AATCGAGGGTAAAA
51028775 CGATAATTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.44, C:0.03, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGAAATTTTGTA
Found at i:51028781 original size:27 final size:27
Alignment explanation
Indices: 51028707--51028798 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
51028697 GTAATTTCAC
*
51028707 AATCGAGGATAAAATAGA-AATTTTGTA
1 AATCGAGGGTAAAA-AGATAATTTTGTA
* * *
51028734 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAAAGATAATTTTGTA
* * *
51028761 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAAAGATAATTTTGTA
*
51028788 AGTCGAGGGTA
1 AATCGAGGGTA
51028799 CTTTGGTAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 53 0.98
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAAAGATAATTTTGTA
Found at i:51028834 original size:27 final size:27
Alignment explanation
Indices: 51028778--51028837 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
51028768 GGTAAAACGA
* * * *
51028778 TAATTCTATAAGTCGAGGGTACTTTGG
1 TAATTTTACAAGTCGAGGATACTTTAG
51028805 TAATTTTACAAGTCGAGGATA-TTTCAG
1 TAATTTTACAAGTCGAGGATACTTT-AG
51028832 TAATTT
1 TAATTT
51028838 GGTAAACTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGATACTTTAG
Found at i:51034401 original size:37 final size:37
Alignment explanation
Indices: 51034293--51034402 Score: 175
Period size: 37 Copynumber: 3.0 Consensus size: 37
51034283 TTTAGCTCGA
* * * *
51034293 ATAATCCCCACATGTAGTTATCGGGTCTTACCCGAAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
*
51034330 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
51034367 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
51034403 ATATATTTCC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
Found at i:51034595 original size:48 final size:48
Alignment explanation
Indices: 51034535--51035311 Score: 1304
Period size: 48 Copynumber: 16.2 Consensus size: 48
51034525 CGGCCACAAT
*
51034535 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
51034583 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
51034631 ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* **
51034679 ATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
51034727 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
51034775 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
**
51034823 ATATACATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* ** *
51034871 ATATATATATCTCATACATATTTCATGTTAGCCATTC-GATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
51034918 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
51034966 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
51035014 ATATATATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* **
51035062 ATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
51035110 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
51035158 ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* **
51035206 ATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
51035254 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
51035302 ACATATATAT
1 ATATACATAT
51035312 ATTTATCTTG
Statistics
Matches: 691, Mismatches: 37, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
47 43 0.06
48 648 0.94
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:51038531 original size:13 final size:13
Alignment explanation
Indices: 51038513--51038542 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
51038503 ATAACTCAAC
51038513 GAATACTCTAATA
1 GAATACTCTAATA
51038526 GAATACTCTAATA
1 GAATACTCTAATA
51038539 GAAT
1 GAAT
51038543 TCTCAAGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (13 bp):
GAATACTCTAATA
Found at i:51040821 original size:43 final size:43
Alignment explanation
Indices: 51040716--51040821 Score: 106
Period size: 43 Copynumber: 2.5 Consensus size: 43
51040706 AGACCACGTT
* ** *
51040716 TGGGGCATTGGCATTG-TATTGCAATTGTGTGTAAGACCATGTC
1 TGGGACATTGGCATTGTTA-TGCAATTACGTGTAACACCATGTC
* * * * * *
51040759 AGGGATATTAGAATCGTTATGCTATTACGTGTAACACCATGTC
1 TGGGACATTGGCATTGTTATGCAATTACGTGTAACACCATGTC
51040802 TGGGACATTGGCATTGTTAT
1 TGGGACATTGGCATTGTTAT
51040822 ATGATTTCGT
Statistics
Matches: 47, Mismatches: 15, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
43 45 0.96
44 2 0.04
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (43 bp):
TGGGACATTGGCATTGTTATGCAATTACGTGTAACACCATGTC
Found at i:51046605 original size:27 final size:27
Alignment explanation
Indices: 51046575--51046686 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
51046565 AGGAAGCGTC
*
51046575 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
51046602 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
51046629 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
51046657 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
51046683 CTGG
1 CTGG
51046687 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:51046681 original size:54 final size:54
Alignment explanation
Indices: 51046575--51046686 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
51046565 AGGAAGCGTC
* *
51046575 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
51046629 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
51046683 CTGG
1 CTGG
51046687 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:51053168 original size:40 final size:40
Alignment explanation
Indices: 51053106--51053310 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
51053096 AAACCAAGTA
* * *
51053106 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* *
51053145 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
51053185 CCTTCGGGACTTAGCCCGAATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
51053225 CCTTCGGGACTTAGCCCGGATATAGTAACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCA-CACAAATG
*
51053265 CCTTCGGGACTTAGCCCGGA-ATTAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
51053305 CCTTCG
1 CCTTCG
51053311 TTATCATCCG
Statistics
Matches: 152, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 15 0.10
40 137 0.90
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:51057898 original size:27 final size:27
Alignment explanation
Indices: 51057857--51057967 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
51057847 AGGAAGCGTC
*
51057857 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
51057884 CTAGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
51057911 CTGGTGGCTCTGCTACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
51057939 CTGGTGACTCTGTCAC-ATTATCTG-T
1 CTGGTGGCTCTGCCACAATTATCTGAT
51057964 CTGG
1 CTGG
51057968 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
25 5 0.07
26 3 0.04
27 46 0.65
28 17 0.24
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:51057963 original size:54 final size:53
Alignment explanation
Indices: 51057857--51057967 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 53
51057847 AGGAAGCGTC
* *
51057857 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTG-T
* * * * *
51057911 CTGGTGGCTCTGCTACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGT
51057964 CTGG
1 CTGG
51057968 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 5 0.10
54 27 0.55
55 17 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGT
Found at i:51061048 original size:39 final size:40
Alignment explanation
Indices: 51061003--51061226 Score: 224
Period size: 40 Copynumber: 5.7 Consensus size: 40
51060993 GCTCCTCGTT
* * * *
51061003 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
51061043 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
51061082 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
51061122 CAAAGGCCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
51061161 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
51061202 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51061227 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.01
39 65 0.42
40 77 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51061096 original size:40 final size:38
Alignment explanation
Indices: 51060970--51061226 Score: 200
Period size: 40 Copynumber: 6.5 Consensus size: 38
51060960 AAATCACGTA
* * *
51060970 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCG--CACAATG
* * * *
51061009 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAATG
*
51061048 CCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCAC-AATG
*
51061088 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCAC-AATG
*
51061128 CCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGG-ATTTAGTA-CTCGCAC-AATG
** * * * *
51061167 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAATG
*
51061207 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
51061227 CAGCATTCAA
Statistics
Matches: 180, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
38 4 0.02
39 78 0.43
40 89 0.49
41 9 0.05
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAATG
Found at i:51061159 original size:79 final size:78
Alignment explanation
Indices: 51061003--51061226 Score: 213
Period size: 79 Copynumber: 2.8 Consensus size: 78
51060993 GCTCCTCGTT
* * *
51061003 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
51061068 TTTAATGACTCGCA
66 TTTAAT-ACTCGCA
* * * *
51061082 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACTTAACCCGG
51061146 AACTTGT-AT-CTCGCA
65 -A-TT-TAATACTCGCA
* ** * * * * * *
51061161 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGACTTAACCCG
51061225 GA
64 GA
51061227 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
78 3 0.03
79 88 0.73
80 24 0.20
81 4 0.03
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
TTTAATACTCGCA
Found at i:51061235 original size:41 final size:41
Alignment explanation
Indices: 51061158--51061235 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51061148 CTTGTATCTC
* * *
51061158 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51061199 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51061236 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51074872 original size:79 final size:79
Alignment explanation
Indices: 51074739--51074940 Score: 288
Period size: 79 Copynumber: 2.6 Consensus size: 79
51074729 AAACCAAGTA
* *
51074739 CCTTCGGGATTTA-ACCGGATATAGCTACTCG--CAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
51074801 TAGCTCGCACAAATG
65 TAACTCGCACAAATG
51074816 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
51074880 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
51074895 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATGCCTTCG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCG
51074941 TTATCATCCG
Statistics
Matches: 113, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
76 7 0.06
77 20 0.18
79 53 0.47
80 33 0.29
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:51074876 original size:40 final size:40
Alignment explanation
Indices: 51074739--51074940 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
51074729 AAACCAAGTA
* *
51074739 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCG--CAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
51074776 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51074816 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51074855 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51074895 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51074935 CCTTCG
1 CCTTCG
51074941 TTATCATCCG
Statistics
Matches: 152, Mismatches: 7, Indels: 9
0.90 0.04 0.05
Matches are distributed among these distances:
37 13 0.09
38 14 0.09
39 41 0.27
40 84 0.55
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51079530 original size:27 final size:27
Alignment explanation
Indices: 51079489--51079594 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
51079479 AGGAAGCGTC
*
51079489 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
51079516 CTAGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
51079543 CTGGTGGCTCTGCTACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
51079571 CTGGTGACTCTGTCAC-ATTATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
51079595 TCCTGGCAGC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
26 3 0.05
27 46 0.70
28 17 0.26
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:51079595 original size:54 final size:54
Alignment explanation
Indices: 51079486--51079600 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
51079476 TGGAGGAAGC
* *
51079486 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATTTCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCT
* * * * * *
51079540 GTTCTGGTGGCTCTGCTACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCT
51079594 GTCCTGG
1 GTCCTGG
51079601 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCT
Found at i:51090436 original size:47 final size:47
Alignment explanation
Indices: 51090382--51090477 Score: 158
Period size: 47 Copynumber: 2.0 Consensus size: 47
51090372 GTTGAATTTA
*
51090382 AAGCTTGTTAAATTTGCTCTTAATATTT-TCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCT-AGATAAGTTACTTAGTT
*
51090429 AAGCTTGTTAAATTTGCCCTTAATATTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCTAGATAAGTTACTTAGTT
51090476 AA
1 AA
51090478 AGAAAATTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 45 0.98
48 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCTAGATAAGTTACTTAGTT
Found at i:51091356 original size:45 final size:45
Alignment explanation
Indices: 51091292--51091465 Score: 244
Period size: 45 Copynumber: 3.9 Consensus size: 45
51091282 TCGTACAGTA
* * *
51091292 CTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCAGTGAGATG
1 CTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATG
* * *
51091337 CTATTCAGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAGATA
1 CTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATG
* *
51091382 CTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
1 CTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATG
* *
51091427 ATA-TC-GGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGA
1 CTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
51091466 ATGAATTCAG
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
43 32 0.28
44 2 0.02
45 81 0.70
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
CTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATG
Found at i:51098059 original size:47 final size:47
Alignment explanation
Indices: 51098005--51098147 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
51097995 GTTGAATTTA
51098005 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
*
51098052 AAGCTTGTTAAATTTGCTCTTAATATTTTTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
* * * *
51098099 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGGTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
51098146 AA
1 AA
51098148 AGAAAATTTT
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
Found at i:51099028 original size:45 final size:45
Alignment explanation
Indices: 51098950--51099170 Score: 189
Period size: 45 Copynumber: 5.0 Consensus size: 45
51098940 TATCGTATAG
* * * * *
51098950 TACTATTTGAGCCTTTTGATCCTAGTAGGCTATAATGCCGGGGTGA
1 TACTATTCGAGCC-TTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* **
51098996 TACTATTCGAGCCTTTGAGCCTAACAGGCTATAATGCAAGTGAGA
1 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * ** *
51099041 TACTACTCGGGCCTTCAAGCCTAGCAGGCTATAATGCCTGTGAGA
1 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * * * *
51099086 TACTATCCGGGCCTTTGAGCCTGGCTGGCTATAATGCCGATGAAA
1 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
51099131 TGA-TA-TCG-GGCTTCGAGCCTAGCAGGCGA-AATGCCAGTGA
1 T-ACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
51099171 ATGAATTCAG
Statistics
Matches: 142, Mismatches: 32, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
42 9 0.06
43 16 0.11
44 2 0.01
45 102 0.72
46 13 0.09
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (45 bp):
TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:51099730 original size:16 final size:18
Alignment explanation
Indices: 51099699--51099731 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
51099689 AACTCGTCAC
51099699 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
51099717 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
51099732 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:51104559 original size:28 final size:28
Alignment explanation
Indices: 51104519--51104589 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
51104509 GATGTCTCGT
51104519 ACACTAAGTGCCATACTCAATATCTT-GC
1 ACACTAAGTGCCATACTCAATAT-TTGGC
* * *
51104547 ACACCAAGTGCCATTCTTAATATTTGGC
1 ACACTAAGTGCCATACTCAATATTTGGC
51104575 ACACTAAGTGCCATA
1 ACACTAAGTGCCATA
51104590 TACATATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 2 0.05
28 35 0.95
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (28 bp):
ACACTAAGTGCCATACTCAATATTTGGC
Found at i:51111143 original size:46 final size:47
Alignment explanation
Indices: 51111037--51111158 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
51111027 TGTCTTCGAC
** * *
51111037 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
51111087 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
51111133 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
51111159 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:51115713 original size:42 final size:41
Alignment explanation
Indices: 51115667--51116004 Score: 209
Period size: 42 Copynumber: 7.6 Consensus size: 41
51115657 TCTCTTACTT
51115667 GATGCCATAGT-CCA-ACTATGGTCTTACACAAAGTCTCATATC
1 GATGCCATA-TACCAGAC-ATGGTCTTACACAAA-TCTCATATC
* * *
51115709 GATGCCATGTACCAGACATGGTCTTATACGAAATCACATATC
1 GATGCCATATACCAGACATGGTCTTACAC-AAATCTCATATC
** * * *
51115751 GATGCCGCAT-CCTAGACATGGTGTTACATGAAATCTCATACC
1 GATGCCATATACC-AGACATGGTCTTACA-CAAATCTCATATC
* * *
51115793 GAAGCCATATCCCAGATATGGTCTTACACATAATCTCATATC
1 GATGCCATATACCAGACATGGTCTTACACA-AATCTCATATC
*
51115835 GATGCCGATGTCATATCCTAGATATGGTCTTACACAAGATCTCATATCGAAGC
1 GATGCC-A--T-ATA-CC-AGACATGGTCTTACACAA-ATCTCATAT-----C
*
51115888 TGATGCCATAT-CCTAGATATGGTCTTACACAAGATCTCATATTGATGC
1 -GATGCCATATACC-AGACATGGTCTTACACAA-ATCTC--A-T-AT-C
* * *
51115936 TGATGCCATATCCCAGATATGGTCTTACACAGTATCTCATATC
1 -GATGCCATATACCAGACATGGTCTTACACA-AATCTCATATC
* *
51115979 GATGCCATGT-CTCATACATGGTCTTA
1 GATGCCATATAC-CAGACATGGTCTTA
51116005 TATGTATCAC
Statistics
Matches: 245, Mismatches: 24, Indels: 54
0.76 0.07 0.17
Matches are distributed among these distances:
41 5 0.02
42 116 0.47
43 9 0.04
44 2 0.01
45 2 0.01
46 3 0.01
47 3 0.01
48 88 0.36
49 2 0.01
50 3 0.01
51 2 0.01
52 2 0.01
53 2 0.01
54 6 0.02
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (41 bp):
GATGCCATATACCAGACATGGTCTTACACAAATCTCATATC
Found at i:51115869 original size:48 final size:48
Alignment explanation
Indices: 51115791--51115984 Score: 284
Period size: 48 Copynumber: 4.0 Consensus size: 48
51115781 AAATCTCATA
*
51115791 CCGAAGCCATATCCCAGATATGGTCTTACACATA-ATCTCATATCGATG
1 CCGATGCCATATCCCAGATATGGTCTTACACA-AGATCTCATATCGATG
* * *
51115839 CCGATGTCATATCCTAGATATGGTCTTACACAAGATCTCATATCGAAG
1 CCGATGCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATG
* * *
51115887 CTGATGCCATATCCTAGATATGGTCTTACACAAGATCTCATATTGATG
1 CCGATGCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATG
*
51115935 CTGATGCCATATCCCAGATATGGTCTTACAC-AGTATCTCATATCGATG
1 CCGATGCCATATCCCAGATATGGTCTTACACAAG-ATCTCATATCGATG
51115983 CC
1 CC
51115985 ATGTCTCATA
Statistics
Matches: 133, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
47 3 0.02
48 130 0.98
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (48 bp):
CCGATGCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATG
Found at i:51117527 original size:53 final size:52
Alignment explanation
Indices: 51117376--51117542 Score: 169
Period size: 52 Copynumber: 3.2 Consensus size: 52
51117366 TGACGAAAAA
* * **
51117376 GATGTGAT-ATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
1 GATGTGATAATGTG-TTCTGTATAAGACCATAGCTGGGCTATGGCATCGATGT
* * *
51117428 AATGTGATCCAA-GT-TCCTATATAAGACCATAGCTGGGCTATGGCATCGATGT
1 GATGTGAT--AATGTGTTCTGTATAAGACCATAGCTGGGCTATGGCATCGATGT
* *
51117480 GATGTGATAATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCAGTATGT
1 GATGTGATAATGTG-TTCTGTATAAGACCATAGCTGGGCTATGGCATC-G-ATGT
*
51117535 TATGTGAT
1 GATGTGAT
51117543 TCGTGTAAGA
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
50 2 0.02
51 2 0.02
52 46 0.49
53 29 0.31
54 3 0.03
55 12 0.13
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (52 bp):
GATGTGATAATGTGTTCTGTATAAGACCATAGCTGGGCTATGGCATCGATGT
Found at i:51132307 original size:52 final size:52
Alignment explanation
Indices: 51132229--51132428 Score: 173
Period size: 52 Copynumber: 3.9 Consensus size: 52
51132219 GACGGAATAG
* * *
51132229 ATGTGATATGTGCTTCCATATAAGACCATAGCTGGGCTATGGCATCGGTACA
1 ATGTGATATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* ***
51132281 ATGTGAT-TCGAG-TTCCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGTG
1 ATGTGATAT-GAGATT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* * * *
51132333 ATGTGATAATGTGATTCCGAATAAGACCATATCTGGGATATGGCATCGGT---
1 ATGTGAT-ATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* * * * *
51132383 ATGT--TATGTGATT-CGTGTAAGACCATGGCAGGGCTATGGCTTCGGT
1 ATGTGATATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
51132429 GTGTGATGTG
Statistics
Matches: 125, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
46 26 0.21
47 8 0.06
48 1 0.01
50 4 0.03
51 3 0.02
52 48 0.38
53 32 0.26
54 3 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (52 bp):
ATGTGATATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
Found at i:51134811 original size:46 final size:46
Alignment explanation
Indices: 51134761--51134933 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
51134751 TGGTTGAGCA
*
51134761 TCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
51134807 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51134852 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51134900 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51134934 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51134917 original size:93 final size:93
Alignment explanation
Indices: 51134758--51134928 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
51134748 GGATGGTTGA
*
51134758 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
51134823 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
51134851 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
51134916 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
51134929 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51137915 original size:15 final size:15
Alignment explanation
Indices: 51137895--51137949 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
51137885 GTATCTTGGG
51137895 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
51137910 TTTCTTTATT-TGGA
1 TTTCTTTATTCTGGA
*
51137924 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
51137939 TTTCTTTATTC
1 TTTCTTTATTC
51137950 GGTTTCCTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 1 0.03
14 11 0.31
15 21 0.60
16 2 0.06
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51140398 original size:46 final size:46
Alignment explanation
Indices: 51140348--51140520 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
51140338 TGGTTGAGCA
51140348 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
51140394 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51140439 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51140487 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51140521 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51140504 original size:93 final size:93
Alignment explanation
Indices: 51140345--51140515 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
51140335 GGATGGTTGA
* *
51140345 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51140410 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
51140438 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51140503 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51140516 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51143484 original size:15 final size:15
Alignment explanation
Indices: 51143464--51143519 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
51143454 GTATCTTGGG
51143464 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
51143479 TTTCTTTATTTTGGA
1 TTTCTTTATTCTGGA
*
51143494 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
51143509 TTTCTTTATTC
1 TTTCTTTATTC
51143520 GGTTTCCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 1 0.03
15 32 0.91
16 2 0.06
ACGTcount: A:0.12, C:0.14, G:0.11, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51145963 original size:46 final size:45
Alignment explanation
Indices: 51145913--51146082 Score: 195
Period size: 46 Copynumber: 3.8 Consensus size: 45
51145903 TGGTTGAGCA
51145913 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
***** * *
51145959 TCCGAACTCGTTGAGTTGAGTCCGAGTTGTGAAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-T-GCGAAG
51146005 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
51146051 -CCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51146083 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 15 0.15
45 20 0.19
46 62 0.60
47 1 0.01
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:51150128 original size:13 final size:13
Alignment explanation
Indices: 51150110--51150134 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51150100 CTCGGCAGGG
51150110 ACACGCCCGTGTA
1 ACACGCCCGTGTA
51150123 ACACGCCCGTGT
1 ACACGCCCGTGT
51150135 GTGATTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:51162984 original size:14 final size:14
Alignment explanation
Indices: 51162965--51162994 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
51162955 AAAGTTTCAG
51162965 ATACAGAACTAGCT
1 ATACAGAACTAGCT
51162979 ATACAGAACTAGCT
1 ATACAGAACTAGCT
51162993 AT
1 AT
51162995 GTATGAGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.23
Consensus pattern (14 bp):
ATACAGAACTAGCT
Found at i:51167657 original size:15 final size:16
Alignment explanation
Indices: 51167632--51167661 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51167622 TTATATTTGT
51167632 TTTTATTTAAAAATAA
1 TTTTATTTAAAAATAA
51167648 TTTT-TTTAAAAATA
1 TTTTATTTAAAAATA
51167662 CACTAAATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTATTTAAAAATAA
Found at i:51167879 original size:11 final size:11
Alignment explanation
Indices: 51167850--51167880 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
51167840 TTTAGTTGGG
51167850 TAAGTTTTTTT
1 TAAGTTTTTTT
51167861 TAAGGTTTTTTT
1 TAA-GTTTTTTT
51167873 TAAGTTTT
1 TAAGTTTT
51167881 GGTAATGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.19, C:0.00, G:0.13, T:0.68
Consensus pattern (11 bp):
TAAGTTTTTTT
Found at i:51170421 original size:5 final size:5
Alignment explanation
Indices: 51170411--51170442 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
51170401 TTTTTTCCAT
51170411 TATTA TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TATTA TA
51170443 ATCAAACTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:51173465 original size:40 final size:40
Alignment explanation
Indices: 51173398--51173574 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
51173388 ACCCAAGTAT
*
51173398 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
51173437 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
** * * *
51173477 CTTCGGGTCTTAGCTTGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
51173517 CTTCGGGACATAGCCCGGATATAGCAACTCGAACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
51173557 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
51173575 TTATCATCCG
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 99 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:51173531 original size:80 final size:80
Alignment explanation
Indices: 51173413--51173569 Score: 235
Period size: 80 Copynumber: 2.0 Consensus size: 80
51173403 GGATTTAGCC
* * * *
51173413 GGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCC
1 GGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGAACAAATGCC
*
51173478 TTCGGGTCTTAGCTT
66 TTCGGATCTTAGCTT
* *
51173493 GGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGAACGAATGC
1 GGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGAACAAATGC
51173557 CTTCGGATCTTAG
65 CTTCGGATCTTAG
51173570 TCCGGTTATC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 68 0.99
81 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (80 bp):
GGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGAACAAATGCC
TTCGGATCTTAGCTT
Found at i:51183892 original size:46 final size:46
Alignment explanation
Indices: 51183851--51184058 Score: 210
Period size: 46 Copynumber: 4.5 Consensus size: 46
51183841 CGAACTCATG
* *
51183851 GAGTTGAGTCC-AGGTTCACTTATGGATGCAAACGTCCGAACTCATT
1 GAGTTGAGTCCGA-GTTCACTTATGGATGCAAACGTCCGAGCTCGTT
* * * *
51183897 GAGTTGAGTCTC-AGTTC-GTGA--GATGTAACTAGGCATCCGAGCTCGTT
1 GAGTTGAGTC-CGAGTTCACTTATGGATGCAA--A--CGTCCGAGCTCGTT
* * * *
51183944 GAGTTAAGTCTGAGTTCACTTATGGAAGCGAACGTCCGAGCTCGTT
1 GAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCGTT
* *
51183990 GAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTT
1 GAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCGTT
*
51184036 GAGTTGAGTTCGAGTTCACTTAT
1 GAGTTGAGTCCGAGTTCACTTAT
51184059 AGGCGGGTTA
Statistics
Matches: 134, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.04
45 3 0.02
46 91 0.68
47 27 0.20
48 3 0.02
50 4 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
GAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCGTT
Found at i:51186683 original size:30 final size:29
Alignment explanation
Indices: 51186647--51186703 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
51186637 ATAGTATTGT
*
51186647 ATCTTGGGTTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATT-TGGGTTTCTCA
*
51186677 ATCTTGGATTTCTTTATTTGGTTTTCT
1 ATCTTGGATTTCTTTATTTGGGTTTCT
51186704 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.11, C:0.14, G:0.18, T:0.58
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTTGGGTTTCTCA
Found at i:51186702 original size:14 final size:14
Alignment explanation
Indices: 51186650--51186704 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 14
51186640 GTATTGTATC
51186650 TTGGGTTTCTTTAT
1 TTGGGTTTCTTTAT
**
51186664 TCTGGGTTTCTCAAT
1 T-TGGGTTTCTTTAT
*
51186679 CTTGGATTTCTTTAT
1 -TTGGGTTTCTTTAT
*
51186694 TTGGTTTTCTT
1 TTGGGTTTCTT
51186705 GTTATCTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
14 11 0.33
15 21 0.64
16 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.18, T:0.60
Consensus pattern (14 bp):
TTGGGTTTCTTTAT
Found at i:51189484 original size:46 final size:46
Alignment explanation
Indices: 51189432--51189652 Score: 209
Period size: 46 Copynumber: 4.8 Consensus size: 46
51189422 AATATTTGAG
* *
51189432 CATCCGAACTCGTTGAATTGAGTCCAAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * *
51189478 CATCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
* * * **
51189525 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTTACTTATGGATATGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* **
51189571 CGTCCGAACTCAATGAGTTGAGTCCGAGTTCACTTATGGATGC-AA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*
51189616 -ATGCTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CAT-C-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51189653 AGGGCGGGTT
Statistics
Matches: 137, Mismatches: 29, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
43 4 0.03
44 1 0.01
45 5 0.04
46 94 0.69
47 28 0.20
48 2 0.01
50 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:51189538 original size:93 final size:93
Alignment explanation
Indices: 51189431--51189601 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 93
51189421 AAATATTTGA
* **
51189431 GCATCCGAACTCGTTGAATTGAGTCCAAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAATTGAGTCCAAGTTCACTTATGGATACGAACATCCGAACTCAATGAGT
*
51189496 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * ** * * *
51189524 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTTACTTATGGATATGAACGTCCGAACTCAATGAGT
1 GCATCCGAACTCGTTGAATTGAGTCCAAGTTCACTTATGGATACGAACATCCGAACTCAATGAGT
51189589 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51189602 ACTTATGGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAATTGAGTCCAAGTTCACTTATGGATACGAACATCCGAACTCAATGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51193043 original size:16 final size:16
Alignment explanation
Indices: 51193017--51193064 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
51193007 TTATGTAACG
51193017 CCCCAAAAATCCCGAAA
1 CCCC-AAAATCCCGAAA
*
51193034 CCCCAAAATCCTGAAA
1 CCCCAAAATCCCGAAA
* *
51193050 TCCCGAAATCCCGAA
1 CCCCAAAATCCCGAA
51193065 CTTTCTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 23 0.85
17 4 0.15
ACGTcount: A:0.42, C:0.40, G:0.08, T:0.10
Consensus pattern (16 bp):
CCCCAAAATCCCGAAA
Found at i:51193052 original size:8 final size:8
Alignment explanation
Indices: 51193023--51193064 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
51193013 AACGCCCCAA
51193023 AAATCCCG
1 AAATCCCG
* *
51193031 AAACCCCA
1 AAATCCCG
*
51193039 AAATCCTG
1 AAATCCCG
51193047 AAATCCCG
1 AAATCCCG
51193055 AAATCCCG
1 AAATCCCG
51193063 AA
1 AA
51193065 CTTTCTTTGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.43, C:0.36, G:0.10, T:0.12
Consensus pattern (8 bp):
AAATCCCG
Found at i:51194792 original size:27 final size:27
Alignment explanation
Indices: 51194762--51195188 Score: 494
Period size: 27 Copynumber: 15.8 Consensus size: 27
51194752 ATTACCAAAG
* *
51194762 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
51194789 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
51194816 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
51194843 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
51194870 TACCCTTGATTTACAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * ***
51194897 TATCCTTGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
51194924 TATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ***
51194951 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
51194978 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
51195005 TACTCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ***
51195032 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
51195059 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
51195086 TACTCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
51195113 CACCTTCGGTTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** **
51195140 TACCCTTAATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
51195167 TACCTTCAATTTATAAAATTAC
1 TACCCTCGATTTACAGAATTAC
51195189 TAAAATACCC
Statistics
Matches: 339, Mismatches: 61, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 339 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:51195213 original size:27 final size:27
Alignment explanation
Indices: 51195180--51195242 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
51195170 CTTCAATTTA
51195180 TAAAATTACTAAAATACCCCTGTAGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
* * * * *
51195207 TAGAATTACTGAGATACCCTTGTGGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
51195234 TAAAATTAC
1 TAAAATTAC
51195243 CATTTTGCCC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.29
Consensus pattern (27 bp):
TAAAATTACTAAAATACCCCTGTAGGG
Found at i:51195505 original size:27 final size:26
Alignment explanation
Indices: 51195467--51195549 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
51195457 TGGAGGAAGC
*
51195467 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
51195494 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
51195520 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
51195547 GTT
1 GTT
51195550 GACCGATCCA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:51195689 original size:22 final size:22
Alignment explanation
Indices: 51195657--51195715 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
51195647 CCCGTAATTG
*
51195657 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
51195679 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
51195701 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
51195716 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:51196079 original size:6 final size:6
Alignment explanation
Indices: 51196070--51196160 Score: 78
Period size: 6 Copynumber: 14.8 Consensus size: 6
51196060 TTGCATTCAC
* * *
51196070 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
51196119 ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
51196161 AGTTCTGGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
5 2 0.03
6 58 0.87
7 5 0.07
8 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:51196100 original size:19 final size:19
Alignment explanation
Indices: 51196076--51196143 Score: 95
Period size: 19 Copynumber: 3.6 Consensus size: 19
51196066 TCACATTCTG
51196076 ATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGTCACCTA
*
51196095 ATTCTGATTCTG--ATTCTA
1 ATTCTGATTCTGTCA-CCTA
*
51196113 ATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGTCACCTA
51196132 ATTCTGATTCTG
1 ATTCTGATTCTG
51196144 ATTCTCATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
17 1 0.02
18 15 0.35
19 26 0.60
20 1 0.02
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:51196120 original size:37 final size:37
Alignment explanation
Indices: 51196070--51196160 Score: 146
Period size: 37 Copynumber: 2.5 Consensus size: 37
51196060 TTGCATTCAC
*
51196070 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTG
1 ATTCTAATTCTGATTCTGTCACCTAATTCTGATTCTG
*
51196107 ATTCTAATTCTGATTCTGTCACCTGATTCTGATTCTG
1 ATTCTAATTCTGATTCTGTCACCTAATTCTGATTCTG
* *
51196144 ATTCTCATTTTGATTCT
1 ATTCTAATTCTGATTCT
51196161 AGTTCTGGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.19, C:0.21, G:0.12, T:0.48
Consensus pattern (37 bp):
ATTCTAATTCTGATTCTGTCACCTAATTCTGATTCTG
Found at i:51197317 original size:8 final size:8
Alignment explanation
Indices: 51197300--51197350 Score: 66
Period size: 8 Copynumber: 6.4 Consensus size: 8
51197290 ATGTATTGGC
51197300 AAAAGCCG
1 AAAAGCCG
*
51197308 AAATGCCG
1 AAAAGCCG
51197316 AAAAGCCG
1 AAAAGCCG
*
51197324 AAAAGTCG
1 AAAAGCCG
*
51197332 AAATGCCG
1 AAAAGCCG
*
51197340 AAAAGCTG
1 AAAAGCCG
51197348 AAA
1 AAA
51197351 GTTTGGCTAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.49, C:0.20, G:0.24, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:51197333 original size:24 final size:24
Alignment explanation
Indices: 51197300--51197350 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
51197290 ATGTATTGGC
51197300 AAAAGCCGAAATGCCGAAAAGCCG
1 AAAAGCCGAAATGCCGAAAAGCCG
* *
51197324 AAAAGTCGAAATGCCGAAAAGCTG
1 AAAAGCCGAAATGCCGAAAAGCCG
51197348 AAA
1 AAA
51197351 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.20, G:0.24, T:0.08
Consensus pattern (24 bp):
AAAAGCCGAAATGCCGAAAAGCCG
Found at i:51197673 original size:28 final size:29
Alignment explanation
Indices: 51197561--51197674 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
51197551 TGAGCATGAC
*
51197561 TATGAATGTGA-CTGGGCCTAAT-GGTCCA
1 TATGAATGTGATTTGGGCCTAATAGG-CCA
* *
51197589 TATAAATGTGATTTGGGCCGAATAGGCCA
1 TATGAATGTGATTTGGGCCTAATAGGCCA
* *
51197618 TAT-ACAGGTGATTTGGGCCTAATGGGCCA
1 TATGA-ATGTGATTTGGGCCTAATAGGCCA
* *
51197647 TATGAATATGA-TTGGGCTTAATAGGCCA
1 TATGAATGTGATTTGGGCCTAATAGGCCA
51197675 GATACAGGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 26 0.36
29 43 0.60
30 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATAGGCCA
Found at i:51197683 original size:57 final size:58
Alignment explanation
Indices: 51197573--51197683 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
51197563 TGAATGTGAC
* * *
51197573 TGGGCCTAATGGTCCATATAAATGTGATTTGGGCCGAATAGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGATTTGGGCCGAATAGGCCAGATACAGGTGATT
* **
51197631 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATAGGCCAGATACAGGT
1 TGGGCCTAATGGGCCATATAAATATGATTTGGGCCGAATAGGCCAGATACAGGT
51197684 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (58 bp):
TGGGCCTAATGGGCCATATAAATATGATTTGGGCCGAATAGGCCAGATACAGGTGATT
Found at i:51198785 original size:17 final size:18
Alignment explanation
Indices: 51198752--51198786 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51198742 GTTTAAGAAG
51198752 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
51198770 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
51198787 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:51199064 original size:12 final size:12
Alignment explanation
Indices: 51199047--51199074 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
51199037 TTACCAGTGC
51199047 AGGGTATCTCTT
1 AGGGTATCTCTT
51199059 AGGGTATCTCTT
1 AGGGTATCTCTT
51199071 AGGG
1 AGGG
51199075 CACTTAACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.14, G:0.32, T:0.36
Consensus pattern (12 bp):
AGGGTATCTCTT
Found at i:51202309 original size:51 final size:51
Alignment explanation
Indices: 51202254--51202353 Score: 121
Period size: 51 Copynumber: 2.0 Consensus size: 51
51202244 CTACCACATA
** * *
51202254 ACATGTAA-CACATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGTT
1 ACATG-AATCACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGTT
* * *
51202305 ACATGAATCTCATCTATTATGAACTCAGACCACTCAACGAGCTCAGATG
1 ACATGAATCACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATG
51202354 CTCGCATCCA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 2 0.05
51 39 0.95
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (51 bp):
ACATGAATCACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGTT
Found at i:51204546 original size:21 final size:21
Alignment explanation
Indices: 51204522--51204565 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
51204512 TTTTATTACA
51204522 ACTAGGATAAATAGACATGTT
1 ACTAGGATAAATAGACATGTT
** * *
51204543 ACTATTATGAATAGATATGTT
1 ACTAGGATAAATAGACATGTT
51204564 AC
1 AC
51204566 CATTATGAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (21 bp):
ACTAGGATAAATAGACATGTT
Found at i:51204570 original size:21 final size:21
Alignment explanation
Indices: 51204531--51204573 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
51204521 AACTAGGATA
*
51204531 AATAGACATGTTACTATTATG
1 AATAGACATGTTACCATTATG
*
51204552 AATAGATATGTTACCATTATG
1 AATAGACATGTTACCATTATG
51204573 A
1 A
51204574 GCTTAATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (21 bp):
AATAGACATGTTACCATTATG
Found at i:51207676 original size:40 final size:41
Alignment explanation
Indices: 51207562--51207678 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 41
51207552 CATACCAATT
* *
51207562 CCATATCCTAGATATGGTCTTACATGAGATCTCATATTGATG
1 CCATATCCTAGATATGGTCTTACACGA-ATCTCATATCGATG
* * * * * *
51207604 CCAAAAGCCTAGCTATGGTCTGACACAAAATCTGAT-TCGATG
1 CC-ATATCCTAGATATGGTCTTACAC-GAATCTCATATCGATG
51207646 CCATATCC-AGATATGGTCTTACACGTAATCTCA
1 CCATATCCTAGATATGGTCTTACACG-AATCTCA
51207679 ACTAACCATA
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
40 20 0.34
41 4 0.07
42 9 0.16
43 24 0.41
44 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (41 bp):
CCATATCCTAGATATGGTCTTACACGAATCTCATATCGATG
Found at i:51230199 original size:42 final size:42
Alignment explanation
Indices: 51230152--51230272 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 42
51230142 CACATAGTGC
* * *
51230152 CATATCAATGCCATGTCCTAGATATGGTCTGACATGAGATCT
1 CATATCAATGCCATATCCTAGATATGGTCTGACACGAAATCT
** *
51230194 CATATCAATGCCA-A-CAGCTCATCTATGGTCTTACACGAAATCT
1 CATATCAATGCCATATC--CT-AGATATGGTCTGACACGAAATCT
* * *
51230237 CATATCGATGCCATATCCCAGATATGGTCTTACACG
1 CATATCAATGCCATATCCTAGATATGGTCTGACACG
51230273 TAACCTCAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
40 1 0.02
42 30 0.47
43 31 0.48
44 1 0.02
45 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCTAGATATGGTCTGACACGAAATCT
Found at i:51234594 original size:40 final size:40
Alignment explanation
Indices: 51234403--51234587 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
51234393 TTGAATGATG
* * * *
51234403 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * * *
51234443 TCCGAACTAAGAT-CCGAAGGCATTTGCGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51234483 TCTGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
51234522 TCCGGGTTAAGTCCCAAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51234563 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51234588 AACGAGTAGC
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
39 32 0.28
40 74 0.64
41 9 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51242279 original size:23 final size:23
Alignment explanation
Indices: 51242253--51242303 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
51242243 AAACCCGAAA
51242253 GAATGAAAAAGGATAGAATACCT
1 GAATGAAAAAGGATAGAATACCT
51242276 GAATGAAAAAGGATAGAATACCT
1 GAATGAAAAAGGATAGAATACCT
51242299 GAATG
1 GAATG
51242304 CTTACACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.51, C:0.08, G:0.24, T:0.18
Consensus pattern (23 bp):
GAATGAAAAAGGATAGAATACCT
Found at i:51245191 original size:40 final size:40
Alignment explanation
Indices: 51245131--51245313 Score: 303
Period size: 40 Copynumber: 4.6 Consensus size: 40
51245121 CAAGCTCAAT
* * * *
51245131 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
51245171 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
51245211 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
51245251 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
51245291 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
51245314 GTATTCAAAT
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:51249251 original size:28 final size:29
Alignment explanation
Indices: 51249194--51249270 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
51249184 AAAAAATAGA
* * * *
51249194 CACTAAGGCTCACAAAT-ACATATCCTGC
1 CACTAAGGCTCACATATAACAGATACAGC
51249222 CACTAAGGCTCACATATAACAGA-ACAGC
1 CACTAAGGCTCACATATAACAGATACAGC
* *
51249250 CACCAAGGCTCGCATATAACA
1 CACTAAGGCTCACATATAACA
51249271 AAATTTTCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 38 0.90
29 4 0.10
ACGTcount: A:0.39, C:0.31, G:0.13, T:0.17
Consensus pattern (29 bp):
CACTAAGGCTCACATATAACAGATACAGC
Found at i:51249634 original size:55 final size:56
Alignment explanation
Indices: 51249570--51249675 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 56
51249560 TTTTCATACG
51249570 CCATATGATGCCATAGCAA-ATGGCTAGGCCTTACACTATATGGACTTCTCATTCC
1 CCATATGATGCCATAGCAATATGGCTAGGCCTTACACTATATGGACTTCTCATTCC
* ** *
51249625 CCATATGATGCCTTATTAATATGGCTAGGCCTTACACTATATGGTCTTCTC
1 CCATATGATGCCATAGCAATATGGCTAGGCCTTACACTATATGGACTTCTC
51249676 TTGCCATGGC
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
55 16 0.35
56 30 0.65
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (56 bp):
CCATATGATGCCATAGCAATATGGCTAGGCCTTACACTATATGGACTTCTCATTCC
Found at i:51251845 original size:13 final size:13
Alignment explanation
Indices: 51251818--51251859 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
51251808 ACTTATTGCC
51251818 TATT-TTTTATAT
1 TATTATTTTATAT
51251830 TATATATTTT-TAT
1 TAT-TATTTTATAT
51251843 TATTATTTTAT-T
1 TATTATTTTATAT
51251855 TATTA
1 TATTA
51251860 ACCCATATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 15 0.56
13 8 0.30
14 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTATTTTATAT
Found at i:51257014 original size:42 final size:42
Alignment explanation
Indices: 51256967--51257052 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
51256957 TATCAGACCT
*
51256967 TATACTTAACTCAAGGGAAGTCTCCCTATCTTCCTTTAGCCC
1 TATACTTAACTCAACGGAAGTCTCCCTATCTTCCTTTAGCCC
*
51257009 TATACTTAACTCAACGGAAGTCTCCCTATCTTCCTTTAGTCC
1 TATACTTAACTCAACGGAAGTCTCCCTATCTTCCTTTAGCCC
51257051 TA
1 TA
51257053 CTCTCCTGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.30, G:0.10, T:0.35
Consensus pattern (42 bp):
TATACTTAACTCAACGGAAGTCTCCCTATCTTCCTTTAGCCC
Found at i:51261039 original size:27 final size:27
Alignment explanation
Indices: 51260979--51261039 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
51260969 CCCTTGTGAT
* *
51260979 GTAAAATTACCATAATGCCCCTGTAGG
1 GTAAAATTACCATAATACCCCTATAGG
** *
51261006 GTAAAATTACTGTAATACCCCTATATG
1 GTAAAATTACCATAATACCCCTATAGG
*
51261033 GTGAAAT
1 GTAAAAT
51261040 GGTTATTCTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (27 bp):
GTAAAATTACCATAATACCCCTATAGG
Found at i:51261078 original size:27 final size:27
Alignment explanation
Indices: 51261048--51261115 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
51261038 ATGGTTATTC
*
51261048 TGCCATTATGTGATAAAATGACTGTTT
1 TGCCCTTATGTGATAAAATGACTGTTT
* **
51261075 TGCCCTTATGTGGTAGGATGACTGTTT
1 TGCCCTTATGTGATAAAATGACTGTTT
*
51261102 CGCCCTTATGTGAT
1 TGCCCTTATGTGAT
51261116 GTATATTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.40
Consensus pattern (27 bp):
TGCCCTTATGTGATAAAATGACTGTTT
Found at i:51261554 original size:32 final size:32
Alignment explanation
Indices: 51261483--51261554 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
51261473 CCAAGGCCCT
* * * *
51261483 AACTGATATTGATTCTGATATGGGCTAGACCC
1 AACTGATAGTGATTCTAAGATGGGCTAGACAC
*
51261515 AACTGATAGTGATTCTAAGATGGGCTAGGCAC
1 AACTGATAGTGATTCTAAGATGGGCTAGACAC
*
51261547 AATTGATA
1 AACTGATA
51261555 CTATGATGGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (32 bp):
AACTGATAGTGATTCTAAGATGGGCTAGACAC
Found at i:51271583 original size:40 final size:40
Alignment explanation
Indices: 51271534--51271774 Score: 365
Period size: 40 Copynumber: 6.0 Consensus size: 40
51271524 AGAATTGATA
*
51271534 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
51271574 GTTACATCCGGGCTAAATCCCGAAGAGCAGTCGTGCTGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* * *
51271614 GTTACATCTGGGCTAAATCTCGAAGAGCATTCGTGCTGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
51271654 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
**
51271694 GTTGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
** * * *
51271734 GTTGTATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
51271774 G
1 G
51271775 ATGTGTAATC
Statistics
Matches: 187, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 187 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.27
Consensus pattern (40 bp):
GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
Found at i:51271884 original size:33 final size:33
Alignment explanation
Indices: 51271845--51271910 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
51271835 GTGTTCATTA
51271845 CTATATGAATTCAAAGTTAAATGAAAGGACACG
1 CTATATGAATTCAAAGTTAAATGAAAGGACACG
51271878 CTATATGAATTCAAAGTTAAATGAAAGGACACG
1 CTATATGAATTCAAAGTTAAATGAAAGGACACG
51271911 TTTAAAGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.24
Consensus pattern (33 bp):
CTATATGAATTCAAAGTTAAATGAAAGGACACG
Found at i:51272013 original size:25 final size:25
Alignment explanation
Indices: 51271971--51272025 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
51271961 TGTGTAATAA
51271971 CGAATGAATATAGACACTATGTGTG
1 CGAATGAATATAGACACTATGTGTG
* * *
51271996 GGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGACACTATGTGTG
51272021 CGAAT
1 CGAAT
51272026 TCTTTAACCG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGACACTATGTGTG
Found at i:51272046 original size:28 final size:28
Alignment explanation
Indices: 51272009--51272107 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
51271999 ATGAATTGAG
*
51272009 GCACTGTGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
** * ** *
51272037 GCACTATGTGTGCGAGA-TCGGTCAGTGG
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
51272065 GCACTATGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
51272093 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
51272108 GATCGGTCAG
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
27 1 0.02
28 54 0.96
29 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:51272075 original size:56 final size:56
Alignment explanation
Indices: 51272007--51272134 Score: 238
Period size: 56 Copynumber: 2.3 Consensus size: 56
51271997 GAATGAATTG
51272007 AGGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGT
1 AGGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGT
* *
51272063 GGGCACTATGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGT
1 AGGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGT
51272119 AGGCACTGTGTGTGCG
1 AGGCACTGTGTGTGCG
51272135 GATTTCGTTT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.28
Consensus pattern (56 bp):
AGGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGT
Found at i:51272124 original size:28 final size:28
Alignment explanation
Indices: 51272037--51272134 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
51272027 CTTTAACCGA
*
51272037 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTAG
** *
51272065 GCACTATGTGTGCGA-ATTCTTTAACCG-A-
1 GCACTATGTGTGCGAGA-TCGGT--CAGTAG
51272093 GCACTATGTGTGCGAGATCGGTCAGTAG
1 GCACTATGTGTGCGAGATCGGTCAGTAG
*
51272121 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
51272135 GATTTCGTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
26 2 0.04
27 2 0.04
28 49 0.88
29 1 0.02
30 2 0.04
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTAG
Found at i:51277830 original size:25 final size:25
Alignment explanation
Indices: 51277796--51277867 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
51277786 CTCTTTTAAT
51277796 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTTGATA
* *
51277821 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTTGATA
* *
51277846 AACTGGGGCAAAGCTCTTTTTG
1 AACTAGGGCAAAGCCCTTTTTG
51277868 CGCTTCCTCT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTTGATA
Found at i:51277938 original size:21 final size:21
Alignment explanation
Indices: 51277913--51277963 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
51277903 TATAATGAGT
* *
51277913 ATATCATGTGCATCTGATAAC
1 ATATCATGTGCATATCATAAC
* *
51277934 ATATCATGCGCATATCATATC
1 ATATCATGTGCATATCATAAC
51277955 ATATCATGT
1 ATATCATGT
51277964 ATATCAAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:51278043 original size:25 final size:24
Alignment explanation
Indices: 51278000--51278047 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
51277990 ATAATGAATC
* * *
51278000 CCTAGGGGTACAATGGTCACTTTTA
1 CCTAGGGGCAAAATAGTCA-TTTTA
51278025 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
51278048 CATATTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAATAGTCATTTTA
Done.