Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 162 of 325
Found at i:51283439 original size:63 final size:64
Alignment explanation
Indices: 51283359--51283542 Score: 162
Period size: 67 Copynumber: 2.8 Consensus size: 64
51283349 ATATAGTTCG
* * *
51283359 GCTCTCTTGTAC-ACATGGTGAATAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGT
1 GCTCTCTTGT-CTACATGGTG-ATACATCAGTACCACCCATGCGACCTAGCCACATATATCCCGT
51283421 A
64 A
* * * * *
51283422 GCTCTCTTGTCTACATGGTG-TCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCC
1 GCTCTCTTGTCTACATGGTGATACATCA----GTACCACCCATGCGACCTAGCCACATATATCCC
51283486 GTA
62 GTA
* * * *
51283489 GCTCTCTTGACTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTG-ATACATCAGTACCACCCATGCGACCTAGCCACAT
51283543 CATAATGTCT
Statistics
Matches: 98, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
61 2 0.02
62 4 0.04
63 18 0.18
64 23 0.23
66 19 0.19
67 29 0.30
68 1 0.01
69 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGATACATCAGTACCACCCATGCGACCTAGCCACATATATCCCGTA
Found at i:51289027 original size:24 final size:25
Alignment explanation
Indices: 51289000--51289077 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 25
51288990 GCTTAGCCTC
51289000 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
* *
51289024 TTTTGATAAACTGGGGCCAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
* * * * *
51289049 TTTCAGTAAACTAGGCCAAAGCTCT
1 TTTTAATAAACTGGGGCAAAGCCCT
51289074 TTTT
1 TTTT
51289078 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
24 6 0.14
25 37 0.86
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:51289149 original size:21 final size:21
Alignment explanation
Indices: 51289124--51289172 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
51289114 TATAATGAGT
* *
51289124 ATATCATGTGCATCTCATAAC
1 ATATCATGCGCATATCATAAC
* *
51289145 ATATCATGCGCATATTATATC
1 ATATCATGCGCATATCATAAC
51289166 ATATCAT
1 ATATCAT
51289173 ATCATATCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (21 bp):
ATATCATGCGCATATCATAAC
Found at i:51295319 original size:40 final size:40
Alignment explanation
Indices: 51295217--51295420 Score: 272
Period size: 40 Copynumber: 5.2 Consensus size: 40
51295207 GATGATAACT
* * *
51295217 GGCTAAGTCCCGAAGGTATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
51295257 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
51295296 GGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * * *
51295336 GGCTAAGTCTCGTAGTCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
51295376 GGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
51295415 GGCTAA
1 GGCTAA
51295421 ATTCCAAAGG
Statistics
Matches: 146, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 42 0.29
40 104 0.71
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:51297449 original size:55 final size:56
Alignment explanation
Indices: 51297384--51297498 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
51297374 AGCATGGCTG
* *
51297384 CCAGATACAGA-AAATGT-GACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTAG-CAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
51297440 CCAGA-ACAGATATATGTAGCAGGGCCACCAGAATAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTAGCAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
51297495 CCAG
1 CCAG
51297499 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 21 0.41
57 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTAGCAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:51297466 original size:27 final size:28
Alignment explanation
Indices: 51297409--51297478 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
51297399 GTGACAGAGT
* * *
51297409 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTATGTAGCAGGGC
51297438 CACCAGAACAGATA-TATGTAGCAGGGC
1 CACCAGAACAGATATTATGTAGCAGGGC
*
51297465 CACCAGAATAGATA
1 CACCAGAACAGATA
51297479 ATTTGTGGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 23 0.62
28 7 0.19
29 7 0.19
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTAGCAGGGC
Found at i:51297651 original size:28 final size:28
Alignment explanation
Indices: 51297604--51297668 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
51297594 AAATTAACCC
* *
51297604 TAGGGGTATAGAGGTCATTTTACATACA
1 TAGGGGTATAGAGGTAATTTGACATACA
*
51297632 TAGGGGTATA-ATGGTAATTTGGCATACA
1 TAGGGGTATAGA-GGTAATTTGACATACA
51297660 TAGGGGTAT
1 TAGGGGTAT
51297669 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 1 0.03
28 32 0.97
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTGACATACA
Found at i:51303330 original size:28 final size:28
Alignment explanation
Indices: 51303265--51303415 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
51303255 GAGATTGGCG
* * * *
51303265 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
51303294 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51303322 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
51303350 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51303378 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51303405 CTGAGTGTGCG
1 CTAAGTGTGCG
51303416 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:51311402 original size:27 final size:28
Alignment explanation
Indices: 51311293--51311415 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
51311283 GAGATTGGCG
* * * *
51311293 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
51311322 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
51311350 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51311378 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51311405 CTGAGTGTGCG
1 CTAAGTGTGCG
51311416 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:51311405 original size:55 final size:57
Alignment explanation
Indices: 51311293--51311415 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
51311283 GAGATTGGCG
* * * *
51311293 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
51311350 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
51311405 CTGAGTGTGCG
1 CTAAGTGTGCG
51311416 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:51311426 original size:27 final size:27
Alignment explanation
Indices: 51311318--51311428 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
51311308 TAAATTGTAC
** * *
51311318 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
51311346 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
51311374 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
51311401 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
51311428 A
1 A
51311429 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:51316518 original size:27 final size:27
Alignment explanation
Indices: 51316467--51316556 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 27
51316457 GTGACAGAGT
*
51316467 CACCAGATATAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
*
51316496 CACCAGAACAGATATATGTGGCAAG-GC
1 CACCAGAACAGATATTTGTGGC-AGTGC
51316523 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
51316551 CACCAG
1 CACCAG
51316557 GACTTTTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:51316552 original size:28 final size:28
Alignment explanation
Indices: 51316467--51316556 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 28
51316457 GTGACAGAGT
* *
51316467 CACCAGATATAGATATTTTGTGGCAGT-GC
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
*
51316496 CACCAGAACAGAT-ATATGTGGCA-AGGC
1 CACCAGAACAGATAATTTGTGGCATA-GC
51316523 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
51316551 CACCAG
1 CACCAG
51316557 GACTTTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
27 23 0.43
28 22 0.42
29 8 0.15
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:51316709 original size:28 final size:28
Alignment explanation
Indices: 51316662--51316726 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
51316652 AAATTAACCC
* *
51316662 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTGGCATACA
51316690 TAGGGGTATA-ATGGTAATTTGGCATACA
1 TAGGGGTATAGA-GGTAATTTGGCATACA
51316718 TAGGGGTAT
1 TAGGGGTAT
51316727 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.29, C:0.08, G:0.31, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTGGCATACA
Found at i:51319404 original size:43 final size:43
Alignment explanation
Indices: 51319356--51319531 Score: 217
Period size: 43 Copynumber: 4.1 Consensus size: 43
51319346 TGAAACTCGA
*
51319356 TGATGTGTATTCGGGCCTTCGTTCCTAGCAGGCTTCATGCCGG
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGG
* * * *
51319399 TGATGTGTATTTGGGCCTTCGTGCCTAGAATGCTTCGTGCCGG
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGG
* * * **
51319442 TGATATGTATTCAGGCCTTCGTGCTTAGCAGGCTTTGTGCCGG
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGG
* * * * *
51319485 TGATCTGTATTCGGGTCTTCTTGCCTAGCAGGCTTAATGCTGG
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGG
51319528 TGAT
1 TGAT
51319532 TCGAGCAAGG
Statistics
Matches: 113, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 113 1.00
ACGTcount: A:0.13, C:0.22, G:0.30, T:0.35
Consensus pattern (43 bp):
TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGG
Found at i:51319786 original size:57 final size:58
Alignment explanation
Indices: 51319685--51319793 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
51319675 CGAATGATTA
* *
51319685 GAGGCACTATGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTATGTGTGCAAATTCCTTCAACCGAGCACTATATGTGCGAGATCGGTAATT
* * *
51319743 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATATGTGCGAGATCG
1 GAGGCACTATGTGTGCAAATTCCTTCAACCGAGCACTATATGTGCGAGATCG
51319794 ATCAGTGGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 28 0.61
58 18 0.39
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (58 bp):
GAGGCACTATGTGTGCAAATTCCTTCAACCGAGCACTATATGTGCGAGATCGGTAATT
Found at i:51328520 original size:15 final size:15
Alignment explanation
Indices: 51328497--51328527 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51328487 CTAAAAATTC
51328497 CAATACAAAACATAT
1 CAATACAAAACATAT
*
51328512 CAATCCAAAACATAT
1 CAATACAAAACATAT
51328527 C
1 C
51328528 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:51328608 original size:25 final size:25
Alignment explanation
Indices: 51328560--51328608 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
51328550 TCACAAAGAT
** * *
51328560 AAAATATTCATCAATGTCATAACTC
1 AAAATATTCATCAAAATAAAAACTC
51328585 AAAATATTCATCAAAATAAAAACT
1 AAAATATTCATCAAAATAAAAACT
51328609 TCAAGCATGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.53, C:0.16, G:0.02, T:0.29
Consensus pattern (25 bp):
AAAATATTCATCAAAATAAAAACTC
Found at i:51329064 original size:14 final size:15
Alignment explanation
Indices: 51329047--51329075 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51329037 CACAAAAATT
51329047 TCACACAT-ATAAAC
1 TCACACATAATAAAC
51329061 TCACACATAATAAAC
1 TCACACATAATAAAC
51329076 ACAAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
TCACACATAATAAAC
Found at i:51332319 original size:15 final size:16
Alignment explanation
Indices: 51332295--51332333 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
51332285 TTAAAAATTA
51332295 TTTTCTGTGTGTTAAT
1 TTTTCTGTGTGTTAAT
*
51332311 TTTTC-GTGTTTTAAT
1 TTTTCTGTGTGTTAAT
*
51332326 TTTACTGT
1 TTTTCTGT
51332334 TTGGATGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.13, C:0.08, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTCTGTGTGTTAAT
Found at i:51334536 original size:13 final size:13
Alignment explanation
Indices: 51334518--51334552 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
51334508 TCACATTGTT
51334518 TTAGTTTTTTTTG
1 TTAGTTTTTTTTG
*
51334531 TTAGTTTCTTTTG
1 TTAGTTTTTTTTG
51334544 TATAGTTTT
1 T-TAGTTTT
51334553 GAATTGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.11, C:0.03, G:0.14, T:0.71
Consensus pattern (13 bp):
TTAGTTTTTTTTG
Found at i:51334717 original size:18 final size:18
Alignment explanation
Indices: 51334694--51334756 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 18
51334684 AAACTACTTG
51334694 TATTTTATGTATATTATC
1 TATTTTATGTATATTATC
*
51334712 TATTTTA-G-ATTGATATATA
1 TATTTTATGTA-T-AT-TATC
51334731 TATTGTTATGTATATTA-C
1 TATT-TTATGTATATTATC
51334749 TTATTTTA
1 -TATTTTA
51334757 GCTTTCTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
16 1 0.03
17 2 0.06
18 12 0.33
19 13 0.36
20 5 0.14
21 2 0.06
22 1 0.03
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (18 bp):
TATTTTATGTATATTATC
Found at i:51345448 original size:28 final size:28
Alignment explanation
Indices: 51345415--51345505 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 28
51345405 ATTCCATGAC
* * *
51345415 TATGAATGTGATTGGGCTTGACGGGCCA
1 TATGAATGTGATTGGGCCTAAAGGGCCA
* *
51345443 TATGAATGTGATTGAGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTAAAGGGCCA
*
51345471 TATGAATGAGATTGGGCCTAAAGGGCCA
1 TATGAATGTGATTGGGCCTAAAGGGCCA
*
51345499 AATGAAT
1 TATGAAT
51345506 AAGTGTGGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAAAGGGCCA
Found at i:51355600 original size:40 final size:40
Alignment explanation
Indices: 51355556--51355685 Score: 224
Period size: 40 Copynumber: 3.2 Consensus size: 40
51355546 GCTCTCAATA
51355556 TAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
1 TAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
51355596 TAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
1 TAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
*
51355636 TAATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG
1 T-A-ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
*
51355678 TACTATAT
1 TAATATAT
51355686 CCAGACTTAA
Statistics
Matches: 86, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
40 46 0.53
41 2 0.02
42 38 0.44
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (40 bp):
TAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
Found at i:51355644 original size:42 final size:42
Alignment explanation
Indices: 51355558--51355685 Score: 224
Period size: 42 Copynumber: 3.1 Consensus size: 42
51355548 TCTCAATATA
51355558 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT-A-
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
51355598 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* *
51355640 ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
51355682 ATAT
1 ATAT
51355686 CCAGACTTAA
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
40 39 0.46
41 1 0.01
42 44 0.52
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (42 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:51355704 original size:82 final size:82
Alignment explanation
Indices: 51355558--51355709 Score: 227
Period size: 82 Copynumber: 1.9 Consensus size: 82
51355548 TCTCAATATA
* **
51355558 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATATCCGGGTTAAATCCCGCA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATATATCCGACTTAAATCCCGCA
51355623 GGCTTCGTGCTGGTAAT
66 GGCTTCGTGCTGGTAAT
* *
51355640 ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-A-CTATATCCAGACTTAAAGTTCCG
1 ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATATATCC-GACTTAAA-TCCCG
51355703 CAGGCTT
64 CAGGCTT
51355710 TGAGCTAGTT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
80 7 0.11
81 7 0.11
82 49 0.78
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (82 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATATATCCGACTTAAATCCCGCA
GGCTTCGTGCTGGTAAT
Found at i:51358898 original size:40 final size:40
Alignment explanation
Indices: 51358843--51359063 Score: 347
Period size: 40 Copynumber: 5.6 Consensus size: 40
51358833 ATTTGAATAC
51358843 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
51358883 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
**
51358923 ATATGGGCTAAGACCCGAAGGCATTTGTGC-AGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
51358962 ATCCGGGCTAAGA-CCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
51359001 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
51359041 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
51359064 ATTGAGCTTG
Statistics
Matches: 167, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 15 0.09
39 42 0.25
40 110 0.66
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:51359089 original size:118 final size:119
Alignment explanation
Indices: 51358843--51359090 Score: 365
Period size: 118 Copynumber: 2.1 Consensus size: 119
51358833 ATTTGAATAC
*
51358843 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * * * *
51358908 TGTGCGAGTTGATATATATGGGCTAAGACCCGAAGGCATTTGTGCAGTTGATAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAGTGGATAT
51358962 ATCCGGGCTAAGA-CCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * * *
51359026 CGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGAGCTTGTGGTTAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGC-AGTGGATAT
51359081 ATCC-GGCTAA
1 ATCCGGGCTAA
51359091 ATTCCAAAGA
Statistics
Matches: 116, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
118 93 0.80
119 23 0.20
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (119 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAGTGGATAT
Found at i:51367293 original size:39 final size:40
Alignment explanation
Indices: 51367196--51367414 Score: 347
Period size: 39 Copynumber: 5.6 Consensus size: 40
51367186 ATTTGAATAC
51367196 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
51367236 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
51367276 -TACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
51367315 ATCCGGGCTAAGA-CCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
51367354 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
51367394 A-CCGGGTTAAGA-CCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
51367415 ATTGAGCTTG
Statistics
Matches: 167, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
38 9 0.05
39 85 0.51
40 73 0.44
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:51367361 original size:79 final size:79
Alignment explanation
Indices: 51367196--51367418 Score: 360
Period size: 79 Copynumber: 2.8 Consensus size: 79
51367186 ATTTGAATAC
*
51367196 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGA-CCGAAGGCAAT
*
51367261 TGTGCGAGTTGATAT
65 TGTGCAAGTTGATAT
*
51367276 -TACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCGAAGGCAATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCGAAGGCAATT
51367340 GTGCAAGTTGATAT
66 GTGCAAGTTGATAT
* * * *
51367354 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATA-CCGGGTTAAGACCGAAGGCAATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCGAAGGCAATT
51367418 G
66 G
51367419 AGCTTGTGGT
Statistics
Matches: 134, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
78 47 0.35
79 87 0.65
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (79 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCGAAGGCAATT
GTGCAAGTTGATAT
Found at i:51372908 original size:27 final size:27
Alignment explanation
Indices: 51372851--51372908 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
51372841 CAACCTTAAC
* * * *
51372851 CCTAGGGGTAATTCAGTAATTTTTGCT
1 CCTAGGGGTAAATCAGTAAATTTTCCA
*
51372878 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGTAAATTTTCCA
51372905 CCTA
1 CCTA
51372909 TAAAGGAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTAAATCAGTAAATTTTCCA
Found at i:51375030 original size:43 final size:43
Alignment explanation
Indices: 51374969--51375397 Score: 481
Period size: 43 Copynumber: 10.0 Consensus size: 43
51374959 GATATGTGAT
51374969 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
** * * *
51375012 ATCGATATGTGATTACGTGTAAGACCTTGTCTAGGATAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
* * **
51375055 ATCGATATATGATTATGTGTAAGACCACGTCTGGGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
* * * * *
51375098 ATCAACATGTGATTACGTGTAAGACC-CTATCTAGGACAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGACATTGGC
* ** **
51375141 ATCGATATGTGATTACATGTAAGA-CACGTCTCAGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
* * *
51375183 ATCAATATGTG-TTACGTGTAAGACCATGTCTGGGACATTGAC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
** * *
51375225 ATCGATATGTGATTACGTGTAAGACCTTGTC-GGGATAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
*
51375267 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
* *
51375310 ATCGATATGTGATTACGTGTAAGACC-CTGTCTGAGACAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGACATTGGC
* * * ** * *
51375353 ATCAATATGTGATTACATGTATGACCATATCTAGGATATTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
51375396 AT
1 AT
51375398 TGTAGATATG
Statistics
Matches: 319, Mismatches: 60, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
41 11 0.03
42 81 0.25
43 227 0.71
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
Found at i:51375350 original size:212 final size:214
Alignment explanation
Indices: 51374973--51375373 Score: 682
Period size: 212 Copynumber: 1.9 Consensus size: 214
51374963 TGTGATATCG
*
51374973 ATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACGTGTAAGACC
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACATTGACATCGATATGTGATTACGTGTAAGACC
* *
51375038 TTGTCTAGGATAGTGGCATCGATATATGATTATGTGTAAGACCACGTCTGGGATGTTGGCATCAA
66 TTGTCTAGGATAGTGGCATCGATATATGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCAA
*
51375103 CATGTGATTACGTGTAAGACCCTATCTAGGACAGTGGCATCGATATGTGATTACATGTAAGACAC
131 CATGTGATTACGTGTAAGACCCTATCTAGGACAGTGGCATCAATATGTGATTACATGTAAGACAC
51375168 GTCTCAGATGTTGGCATCA
196 GTCTCAGATGTTGGCATCA
*
51375187 ATATGTG-TTACGTGTAAGACCATGTCTGGGACATTGACATCGATATGTGATTACGTGTAAGACC
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACATTGACATCGATATGTGATTACGTGTAAGACC
* * *
51375251 TTGTC-GGGATAGTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGA
66 TTGTCTAGGATAGTGGCATCGATATATGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCAA
* *
51375315 TATGTGATTACGTGTAAGACCCTGTCT-GAGACAGTGGCATCAATATGTGATTACATGTA
131 CATGTGATTACGTGTAAGACCCTATCTAG-GACAGTGGCATCAATATGTGATTACATGTA
51375374 TGACCATATC
Statistics
Matches: 176, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
211 1 0.01
212 108 0.61
213 60 0.34
214 7 0.04
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (214 bp):
ATATGTGATTACGTGTAAGACCACGTCTGGGACATTGACATCGATATGTGATTACGTGTAAGACC
TTGTCTAGGATAGTGGCATCGATATATGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCAA
CATGTGATTACGTGTAAGACCCTATCTAGGACAGTGGCATCAATATGTGATTACATGTAAGACAC
GTCTCAGATGTTGGCATCA
Found at i:51376702 original size:13 final size:14
Alignment explanation
Indices: 51376674--51376706 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
51376664 CATTTCGACC
*
51376674 ATGTTTGTATTTAT
1 ATGTTTGTATTGAT
51376688 ATGTTT-TATTGAT
1 ATGTTTGTATTGAT
51376701 ATGTTT
1 ATGTTT
51376707 ATTTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.64
Consensus pattern (14 bp):
ATGTTTGTATTGAT
Found at i:51378295 original size:20 final size:21
Alignment explanation
Indices: 51378264--51378302 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
51378254 CCAGTCCCAT
51378264 GCATCAGATAATAATAACATG
1 GCATCAGATAATAATAACATG
*
51378285 GCATCAG-TAATAGTAACA
1 GCATCAGATAATAATAACA
51378303 GTCAAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (21 bp):
GCATCAGATAATAATAACATG
Found at i:51378381 original size:65 final size:63
Alignment explanation
Indices: 51378266--51378394 Score: 222
Period size: 65 Copynumber: 2.0 Consensus size: 63
51378256 AGTCCCATGC
51378266 ATCAGATAATAATAACATGGCATCAGTAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
1 ATCAGATAATAATAACATGGCATCAGTAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
* *
51378329 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCAT-CAGT-AATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
51378394 A
1 A
51378395 ACCCTAGGGG
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
63 23 0.37
64 4 0.06
65 35 0.56
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.26
Consensus pattern (63 bp):
ATCAGATAATAATAACATGGCATCAGTAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
Found at i:51380573 original size:42 final size:43
Alignment explanation
Indices: 51380514--51380911 Score: 433
Period size: 42 Copynumber: 9.4 Consensus size: 43
51380504 GATATGTGAT
51380514 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACA-TGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGC
** * *
51380556 ATCGATATGTGATTACGTGTAAGACCTTGTCT-AGATAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGC
* * *
51380598 ATCGATATATGATTATGTGT-AGACCACGTCTGGGA-TGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGC
* * * *
51380640 ATCAACATGTGATTACGTGTAAGACC-CTATCTAGGACAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGC
* ** *
51380683 ATCGATATGTGATTACATGTAAGACCACGTCTCAGA-TGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGC
* * * *
51380726 ATCAATATGTGATTACGTGTAAGACCATG-CTTGGGACATTGAC
1 ATCGATATGTGATTACGTGTAAGACCACGTC-TGGGACAGTGGC
** *
51380769 ATCGATATGTGATTACGTGT-AGAACCTTGTC-GGGATAGTGGC
1 ATCGATATGTGATTACGTGTAAG-ACCACGTCTGGGACAGTGGC
51380811 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGAC-GTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGC
*
51380854 ATCGATATGTG-TTACGTGTAAGACC-CTGTCTGAGACAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGC
*
51380896 ATCAATATGTGATTAC
1 ATCGATATGTGATTAC
51380912 ATGTTATGAC
Statistics
Matches: 296, Mismatches: 42, Indels: 35
0.79 0.11 0.09
Matches are distributed among these distances:
41 14 0.05
42 150 0.51
43 129 0.44
44 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGC
Found at i:51380893 original size:213 final size:212
Alignment explanation
Indices: 51380518--51380915 Score: 624
Period size: 213 Copynumber: 1.9 Consensus size: 212
51380508 TGTGATATCG
*
51380518 ATATGTGATTACGTGTAAGACCACGTCTGGGACATGGCATCGATATGTGATTACGTGTAAGACCT
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACATGACATCGATATGTGATTACGTGTAAGACCT
* * *
51380583 TGTCTAGATAGTGGCATCGATATATGATTATGTGTAGACCACGTCTGGGATGTTGGCATCAACAT
66 TGTCGAGATAGTGGCATCGATATATGATTACGTGTAGACCACGTCTGGGACGTTGGCATCAACAT
*
51380648 GTGATTACGTGTAAGACCCTATCTAGGACAGTGGCATCGATATGTGATTACATGTAAGACCACGT
131 GTGATTACGTGTAAGACCCTATCTAGGACAGTGGCATCAATATGTGATTACATGTAAGACCACGT
51380713 CTCAGATGTTGGCATCA
196 CTCAGATGTTGGCATCA
*
51380730 ATATGTGATTACGTGTAAGACCATG-CTTGGGACATTGACATCGATATGTGATTACGTGT-AGAA
1 ATATGTGATTACGTGTAAGACCACGTC-TGGGACA-TGACATCGATATGTGATTACGTGTAAG-A
* * *
51380793 CCTTGTCGGGATAGTGGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
63 CCTTGTCGAGATAGTGGCATCGATATATGATTACGTGT-AGACCACGTCTGGGACGTTGGCATCA
* *
51380858 ATATGTG-TTACGTGTAAGACCCTGTCT-GAGACAGTGGCATCAATATGTGATTACATGT
127 ACATGTGATTACGTGTAAGACCCTATCTAG-GACAGTGGCATCAATATGTGATTACATGT
51380916 TATGACCATA
Statistics
Matches: 170, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
211 1 0.01
212 34 0.20
213 105 0.62
214 30 0.18
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (212 bp):
ATATGTGATTACGTGTAAGACCACGTCTGGGACATGACATCGATATGTGATTACGTGTAAGACCT
TGTCGAGATAGTGGCATCGATATATGATTACGTGTAGACCACGTCTGGGACGTTGGCATCAACAT
GTGATTACGTGTAAGACCCTATCTAGGACAGTGGCATCAATATGTGATTACATGTAAGACCACGT
CTCAGATGTTGGCATCA
Found at i:51383914 original size:65 final size:65
Alignment explanation
Indices: 51383807--51383937 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
51383797 AGTCCCATGC
51383807 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
* *
51383872 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
51383937 A
1 A
51383938 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
Found at i:51383919 original size:30 final size:30
Alignment explanation
Indices: 51383820--51383920 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 30
51383810 AGATAATAAT
*
51383820 AACATGGCATGCAGTAAATAGTAACAGTCA
1 AACATGGCATGCAGTAAATAGTAATAGTCA
* *
51383850 AACAT-GCATTCAAGTCAACCTTATCAGATAATAAT--
1 AACATGGCATGC-AGT-AA----AT-AG-TAATAGTCA
51383885 AACATGGCATGCAGTAAATAGTAATAGTCA
1 AACATGGCATGCAGTAAATAGTAATAGTCA
51383915 AACATG
1 AACATG
51383921 CATTCAGGTC
Statistics
Matches: 55, Mismatches: 5, Indels: 22
0.67 0.06 0.27
Matches are distributed among these distances:
28 6 0.11
29 7 0.13
30 16 0.29
31 2 0.04
34 2 0.04
35 10 0.18
36 7 0.13
37 5 0.09
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.24
Consensus pattern (30 bp):
AACATGGCATGCAGTAAATAGTAATAGTCA
Found at i:51383996 original size:27 final size:26
Alignment explanation
Indices: 51383940--51383996 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
51383930 CAACCTTAAC
* * *
51383940 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
51383966 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
51383993 CCTA
1 CCTA
51383997 TAAAGGAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:51384261 original size:5 final size:6
Alignment explanation
Indices: 51384243--51384272 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
51384233 ACTTATTGCC
51384243 TATTTT TATTTTT TATTTT TATTTT TATTT
1 TATTTT TA-TTTT TATTTT TATTTT TATTT
51384273 ATTAACCCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:51386132 original size:43 final size:43
Alignment explanation
Indices: 51386071--51386483 Score: 499
Period size: 43 Copynumber: 9.6 Consensus size: 43
51386061 GATATGTGAT
51386071 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
** * * *
51386114 ATCGATATGTGATTACGTGTAAGACCTTGTCTAGGATAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
* * **
51386157 ATCGATATATGATTATGTGTAAGACCACGTCTGGGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
* * * * *
51386200 ATCAACATGTGATTACGTGTAAGACC-CTATCTAGGACAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGACATTGGC
* ** **
51386243 ATCGATATGTGATTACATGTAAGACCACGTCTCAGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
* * *
51386286 ATCAATATGTGATTACGTGTAAGACCATGTCTGGGACATTGAC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
** * *
51386329 ATCGATATGTGATTACGTGTAAGACCTTGTC-GGGATAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
*
51386371 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
* *
51386414 ATCGATATGTGATTACGTGTAAGACC-CTGTCTGAGACAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGACATTGGC
* * *
51386457 ATCAATATGTGATTACATGTATGACCA
1 ATCGATATGTGATTACGTGTAAGACCA
51386484 TATCTAGGAT
Statistics
Matches: 311, Mismatches: 54, Indels: 9
0.83 0.14 0.02
Matches are distributed among these distances:
42 39 0.13
43 271 0.87
44 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
Found at i:51387808 original size:13 final size:14
Alignment explanation
Indices: 51387780--51387812 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
51387770 CATTTCGACC
*
51387780 ATGTTTGTATTTAT
1 ATGTTTGTATTGAT
51387794 ATGTTT-TATTGAT
1 ATGTTTGTATTGAT
51387807 ATGTTT
1 ATGTTT
51387813 ATTTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.64
Consensus pattern (14 bp):
ATGTTTGTATTGAT
Found at i:51390527 original size:24 final size:25
Alignment explanation
Indices: 51390487--51390536 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
51390477 AAGGAATTCG
51390487 CACACACAAGTGCCTC-TAATCATT
1 CACACACAAGTGCCTCTTAATCATT
*
51390511 CACACACATAGTG-CTCTTATTCATT
1 CACACACA-AGTGCCTCTTAATCATT
51390536 C
1 C
51390537 GTTATTACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (25 bp):
CACACACAAGTGCCTCTTAATCATT
Found at i:51390788 original size:40 final size:40
Alignment explanation
Indices: 51390713--51391013 Score: 406
Period size: 40 Copynumber: 7.7 Consensus size: 40
51390703 CCAGCATGAT
* * * *
51390713 TGCTCTTC-GGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
51390752 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
51390792 TGCTCTTC-GAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
51390831 TGCTCTTCGGGACTTAGTCCGGATACATCACT---A-GAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
51390867 TGCTCTTCGGGACTTAGCCCAGG-TACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCC-GGATACATCACTAGCACGAA
*
51390907 TGCTCTTCGGGACTTAGCCCGG-TACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
51390946 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
51390986 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
51391014 GTCGAGACCT
Statistics
Matches: 235, Mismatches: 17, Indels: 20
0.86 0.06 0.07
Matches are distributed among these distances:
36 31 0.13
37 3 0.01
38 1 0.00
39 84 0.36
40 114 0.49
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:51390854 original size:79 final size:79
Alignment explanation
Indices: 51390713--51391013 Score: 404
Period size: 79 Copynumber: 3.9 Consensus size: 79
51390703 CCAGCATGAT
* * * * * *
51390713 TGCTCTTC-GGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGAT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG-GGACTTAGCCCGGAT
* *
51390776 ATATTACTAGCACGAA
65 ACATCACTAGCA-GAA
* * *
51390792 TGCTCTTC-GAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
51390856 CATCACT---AGAA
66 CATCACTAGCAGAA
51390867 TGCTCTTCGGGACTTAGCCCAGG-TACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGG-T
1 TGCTCTTCGGGACTTAGCCC-GGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
51390930 ACATCACTAGCATGAA
65 ACATCACTAGCA-GAA
51390946 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
51391010 CATC
66 CATC
51391014 GTCGAGACCT
Statistics
Matches: 199, Mismatches: 14, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
75 20 0.10
76 48 0.24
77 2 0.01
78 5 0.03
79 123 0.62
80 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCAGAA
Found at i:51390884 original size:115 final size:117
Alignment explanation
Indices: 51390700--51391013 Score: 408
Period size: 115 Copynumber: 2.7 Consensus size: 117
51390690 CGAATACACG
* * * * * *
51390700 TCACCAGCATGATTGCTCTTC-GGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGAGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTA--ACGAATGCTCTTCG-GG
* * * *
51390764 -TTTAGCACGGATATATTACTAGCACGAATGCTCTTC-GAACTTAGCCCGGATACA
63 ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGG-TACA
*
51390818 TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACATCACT-A-GAATGCTCTTCGGGACT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAACGAATGCTCTTCGGGACT
*
51390881 TAGCCCAGG-TACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGTACA
66 TAGCCC-GGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGTACA
51390933 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTA--ACGAATGCTCTTCGGGA
51390998 CTTAGCCCGGAT-CATC
64 CTTAGCCCGGATACATC
51391014 GTCGAGACCT
Statistics
Matches: 174, Mismatches: 13, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
114 2 0.01
115 89 0.51
116 15 0.09
118 26 0.15
119 42 0.24
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (117 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAACGAATGCTCTTCGGGACT
TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGTACA
Found at i:51393304 original size:47 final size:47
Alignment explanation
Indices: 51393226--51394054 Score: 1428
Period size: 47 Copynumber: 17.6 Consensus size: 47
51393216 CCCTTCGGGA
* * * * * *
51393226 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51393273 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51393320 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393367 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51393414 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393461 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393508 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393555 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51393602 CTTATCACATATATATACACTTTCACATTCATCAC-TTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393650 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393697 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393744 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51393793 CTTATCACATATATACACTTTCACA-TCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393839 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393886 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51393933 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393982 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51394029 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
51394055 CACAATTATC
Statistics
Matches: 746, Mismatches: 28, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
46 70 0.09
47 540 0.72
48 19 0.03
49 117 0.16
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51393734 original size:189 final size:189
Alignment explanation
Indices: 51393226--51394054 Score: 1441
Period size: 189 Copynumber: 4.4 Consensus size: 189
51393216 CCCTTCGGGA
* * * * * * *
51393226 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
*
51393291 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
51393356 GGCTATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51393414 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
51393479 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
51393544 GGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51393602 CTTATCACATATATATACACTTTCACATTCATCAC-TTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
51393666 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
51393731 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 TCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51393793 CTTATCACATATATACACTTTCACA-TCATCACATCGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
51393857 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
51393922 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51393982 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
*
51394047 ATTCACAT
66 TTTCACAT
51394055 CACAATTATC
Statistics
Matches: 615, Mismatches: 20, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
188 192 0.31
189 307 0.50
190 69 0.11
191 47 0.08
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (189 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51396898 original size:27 final size:28
Alignment explanation
Indices: 51396873--51397161 Score: 240
Period size: 27 Copynumber: 10.7 Consensus size: 28
51396863 CCTTCAATTT
51396873 GTAAAATTACCGAAATACCCCT-AATTT
1 GTAAAATTACCGAAATACCCCTCAATTT
* * * *
51396900 GTGAAATTGCCGAAACACCCCT-GATTT
1 GTAAAATTACCGAAATACCCCTCAATTT
* **
51396927 TTAAAATTACTAAAATACCCCT-AATTT
1 GTAAAATTACCGAAATACCCCTCAATTT
* * * *
51396954 GTGAAATTA-CTAAA-ACACCCTCGACTT
1 GTAAAATTACCGAAATAC-CCCTCAATTT
* * *
51396981 GTAAATTTACCGAAACA-CCCTTAATTT
1 GTAAAATTACCGAAATACCCCTCAATTT
* * *
51397008 GTAAAATTATCAAAATA-CCCTCGATTT
1 GTAAAATTACCGAAATACCCCTCAATTT
* * *
51397035 GTAAAATTATCAAAATA-CCCTCGATTT
1 GTAAAATTACCGAAATACCCCTCAATTT
*
51397062 GTAAAATTACCAAAATA-CCCTCAATTT
1 GTAAAATTACCGAAATACCCCTCAATTT
* *
51397089 GTAAAATTACCGAAACA-CCCTCGATTT
1 GTAAAATTACCGAAATACCCCTCAATTT
* * ** *
51397116 GTAAAATTATCGAAATACCCTTGTA-GT
1 GTAAAATTACCGAAATACCCCTCAATTT
51397143 GTAAAATTACCGAAATACC
1 GTAAAATTACCGAAATACC
51397162 ATTGTAGTGT
Statistics
Matches: 216, Mismatches: 41, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
25 2 0.01
26 7 0.03
27 198 0.92
28 8 0.04
29 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (28 bp):
GTAAAATTACCGAAATACCCCTCAATTT
Found at i:51396936 original size:54 final size:54
Alignment explanation
Indices: 51396824--51397161 Score: 303
Period size: 54 Copynumber: 6.3 Consensus size: 54
51396814 TAATAAAGAG
* * * * * *
51396824 AAATTACTGAAATA-CCCTCGA-TTGTGAAA-TACTAAAATACCTTCAATTTGTA
1 AAATTACCGAAATACCCCT-AATTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * * *
51396876 AAATTACCGAAATACCCCTAATTTGTGAAATTGCCGAAACACCC-CTGATTTTTA
1 AAATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCCTC-GATTTGTA
** * * * *
51396930 AAATTACTAAAATACCCCTAATTTGTGAAATTACTAAAACACCCTCGACTTGTA
1 AAATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * *
51396984 AATTTACCGAAACACCCTTAATTTGTAAAATTATCAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * *
51397038 AAATTATCAAAATA-CCCTCGATTTGTAAAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCCT-AATTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * * * *
51397092 AAATTACCGAAACA-CCCTCGATTTGTAAAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCCT-AATTTGTAAAATTACCAAAATACCCTCGAT-TTGTA
51397146 AAATTACCGAAATACC
1 AAATTACCGAAATACC
51397162 ATTGTAGTGT
Statistics
Matches: 235, Mismatches: 43, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
52 14 0.06
53 17 0.07
54 202 0.86
55 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCCTCGATTTGTA
Found at i:51397159 original size:81 final size:81
Alignment explanation
Indices: 51396824--51397161 Score: 287
Period size: 81 Copynumber: 4.2 Consensus size: 81
51396814 TAATAAAGAG
* * * * * * * * *
51396824 AAATTACTGAAATACCCTCGA-TTGTGAAA-TACTAAAATACCTTCAATTTGTAAAATTACCGAA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAACACCCTCGATTTGTAAAATTATCAAA
* * *
51396887 ATACCC-CTAATTTGTG
66 ATACCCTC-GATGTGTA
* * * * * * * *
51396903 AAATTGCCGAAACACCC-CTGATTTTTAAAATTACTAAAATACCC-CTAATTTGTGAAATTA-CT
1 AAATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAACACCCTC-GATTTGTAAAATTATC-
*
51396965 AAAACACCCTCGACT-TGTA
63 AAAATACCCTCGA-TGTGTA
* * * * *
51396984 AATTTACCGAAACACCCTTAATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTATCAAA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAACACCCTCGATTTGTAAAATTATCAAA
*
51397049 ATACCCTCGATTTGTA
66 ATACCCTCGATGTGTA
* * *
51397065 AAATTACCAAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAACACCCTCGATTTGTAAAATTATCAAA
*
51397130 ATACCCTTG-TAGTGTA
66 ATACCCTCGAT-GTGTA
51397146 AAATTACCGAAATACC
1 AAATTACCGAAATACC
51397162 ATTGTAGTGT
Statistics
Matches: 215, Mismatches: 32, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
78 1 0.00
79 16 0.07
80 10 0.05
81 184 0.86
82 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAACACCCTCGATTTGTAAAATTATCAAA
ATACCCTCGATGTGTA
Found at i:51397166 original size:27 final size:27
Alignment explanation
Indices: 51396980--51397203 Score: 143
Period size: 27 Copynumber: 8.3 Consensus size: 27
51396970 ACCCTCGACT
* * * *
51396980 TGTAAATTTACCGAAACACCCTT-AATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * * *
51397007 TGTAAAATTATCAAAATACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * * *
51397034 TGTAAAATTATCAAAATACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* ** *
51397061 TGTAAAATTACCAAAATACCC-TCAATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * *
51397088 TGTAAAATTACCGAAACACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
*
51397115 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
51397142 TGTAAAATTACCGAAATACCATTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* * *
51397169 TGTAAAATTATCGACATACCCCTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
51397196 GGTAAAAT
1 TGTAAAAT
51397204 GACTATTTTG
Statistics
Matches: 170, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
27 169 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:51397173 original size:54 final size:54
Alignment explanation
Indices: 51396980--51397203 Score: 168
Period size: 54 Copynumber: 4.1 Consensus size: 54
51396970 ACCCTCGACT
* * ** * * *
51396980 TGTAAATTTACCGAAACACCCTTAATTTGTAAAATTATCAAAATA-CCCTCG-ATT
1 TGTAAAATTACCGAAACACCATCGATGTGTAAAATTATCGAAATACCCCT-GTA-G
* * * * * * * ** *
51397034 TGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACCAAAATA-CCCTCAATT
1 TGTAAAATTACCGAAACACCATCGATGTGTAAAATTATCGAAATACCCCTGTA-G
* * *
51397088 TGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAACACCATCGATGTGTAAAATTATCGAAATACCCCTGTAG
* * *
51397142 TGTAAAATTACCGAAATACCATTG-TAGTGTAAAATTATCGACATACCCCTGTAG
1 TGTAAAATTACCGAAACACCATCGAT-GTGTAAAATTATCGAAATACCCCTGTAG
*
51397196 GGTAAAAT
1 TGTAAAAT
51397204 GACTATTTTG
Statistics
Matches: 143, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 138 0.97
55 4 0.03
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (54 bp):
TGTAAAATTACCGAAACACCATCGATGTGTAAAATTATCGAAATACCCCTGTAG
Found at i:51401596 original size:25 final size:26
Alignment explanation
Indices: 51401559--51401607 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
51401549 ATTTTAGGAA
51401559 TTTTTCTATTATTATTTATTTTAAGT
1 TTTTTCTATTATTATTTATTTTAAGT
*
51401585 TTTTTTTA-TATTATTTATTTTAA
1 TTTTTCTATTATTATTTATTTTAA
51401608 AAAATCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (26 bp):
TTTTTCTATTATTATTTATTTTAAGT
Found at i:51401673 original size:26 final size:25
Alignment explanation
Indices: 51401655--51401794 Score: 86
Period size: 26 Copynumber: 5.4 Consensus size: 25
51401645 TTTTTTGAAC
51401655 TATTATTTATTTTAAATTTTATATA
1 TATTATTTATTTTAAATTTTATATA
* ** *
51401680 TATTGTTTATTTTAAACTACTATACA
1 TATTATTTATTTTAAA-TTTTATATA
* *
51401706 TATTA-TTATTTTGAAGTTTTTTATA
1 TATTATTTATTTT-AAATTTTATATA
* *
51401731 TACCT-TTTATTTTAAAATTATTTTTTATA
1 TA-TTATTTATTTT--AA--ATTTTATATA
* * *
51401760 TAATATGTATTTTAAAATTTTGTATA
1 TATTATTTATTTT-AAATTTTATATA
*
51401786 TGTTATTTA
1 TATTATTTA
51401795 GTTATACTAG
Statistics
Matches: 88, Mismatches: 19, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
25 29 0.33
26 35 0.40
27 2 0.02
28 4 0.05
29 18 0.20
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (25 bp):
TATTATTTATTTTAAATTTTATATA
Found at i:51401922 original size:19 final size:19
Alignment explanation
Indices: 51401898--51401958 Score: 104
Period size: 19 Copynumber: 3.2 Consensus size: 19
51401888 ATATACTCCT
51401898 TATCTTAAACTTATATATA
1 TATCTTAAACTTATATATA
*
51401917 TATCTTAAGCTTATATATA
1 TATCTTAAACTTATATATA
51401936 TATCTTAAACATTATATATA
1 TATCTTAAAC-TTATATATA
51401956 TAT
1 TAT
51401959 GTTACTTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
19 27 0.69
20 12 0.31
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.48
Consensus pattern (19 bp):
TATCTTAAACTTATATATA
Found at i:51402060 original size:26 final size:27
Alignment explanation
Indices: 51402011--51402064 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
51402001 GTTTTTTTGT
51402011 ATATTATTTATGTTAAATTTCTCTTTTAC
1 ATATTATTTATGTTAAA--TCTCTTTTAC
*
51402040 ATATTATTTATTTTAAA-CTCTTTTA
1 ATATTATTTATGTTAAATCTCTTTTA
51402065 TATGTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 8 0.33
29 16 0.67
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (27 bp):
ATATTATTTATGTTAAATCTCTTTTAC
Found at i:51402171 original size:27 final size:26
Alignment explanation
Indices: 51402108--51402225 Score: 130
Period size: 26 Copynumber: 4.5 Consensus size: 26
51402098 TTACTTTGTG
* * * *
51402108 TATTATTTATTTTAATTTATTTTACA
1 TATTATTTATTTCAAATTGTTTTATA
* *
51402134 TATTATATATTTGAAATTGTTTTATA
1 TATTATTTATTTCAAATTGTTTTATA
51402160 TATTATTTTATTTCAAATTGTTTTATA
1 TATTA-TTTATTTCAAATTGTTTTATA
*
51402187 TTTTATTTATTTCAAATAT-TTTTCATA
1 TATTATTTATTTCAAAT-TGTTTT-ATA
*
51402214 TATTGTTTATTT
1 TATTATTTATTT
51402226 TGGATCATTC
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 42 0.53
27 37 0.47
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (26 bp):
TATTATTTATTTCAAATTGTTTTATA
Found at i:51402184 original size:53 final size:53
Alignment explanation
Indices: 51402108--51402225 Score: 132
Period size: 53 Copynumber: 2.2 Consensus size: 53
51402098 TTACTTTGTG
* * *
51402108 TATTATTTATTTTAATTTATTTTACATATTATATATTTGAAAT-TGTTTT-ATA
1 TATTATTTATTTCAAATTATTTTACATATTATATATTTCAAATAT-TTTTCATA
* * * *
51402160 TATTATTTTATTTCAAATTGTTTTATATTTTATTTATTTCAAATATTTTTCATA
1 TATTA-TTTATTTCAAATTATTTTACATATTATATATTTCAAATATTTTTCATA
*
51402214 TATTGTTTATTT
1 TATTATTTATTT
51402226 TGGATCATTC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
52 5 0.09
53 42 0.76
54 8 0.15
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (53 bp):
TATTATTTATTTCAAATTATTTTACATATTATATATTTCAAATATTTTTCATA
Found at i:51404788 original size:19 final size:19
Alignment explanation
Indices: 51404764--51404808 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
51404754 CGTCTCTTTT
*
51404764 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCAT-CATA
*
51404783 TGCATTGCATTTTATCATA
1 TGCATTGCATTTCATCATA
51404802 TGCATTG
1 TGCATTG
51404809 GATGTCACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.44
Consensus pattern (19 bp):
TGCATTGCATTTCATCATA
Found at i:51404974 original size:12 final size:12
Alignment explanation
Indices: 51404941--51404990 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
51404931 GGAAAGGTTG
51404941 GAACAAATGC-A
1 GAACAAATGCAA
* *
51404952 GAAGGAGATGCAA
1 GAA-CAAATGCAA
51404965 GAACAAATGCAA
1 GAACAAATGCAA
*
51404977 GCACAAATGCAA
1 GAACAAATGCAA
51404989 GA
1 GA
51404991 GCAACTGGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
11 3 0.10
12 24 0.77
13 4 0.13
ACGTcount: A:0.52, C:0.16, G:0.24, T:0.08
Consensus pattern (12 bp):
GAACAAATGCAA
Found at i:51408135 original size:8 final size:8
Alignment explanation
Indices: 51408122--51408197 Score: 55
Period size: 8 Copynumber: 8.5 Consensus size: 8
51408112 CAAAACAATC
51408122 AAAAATAA
1 AAAAATAA
51408130 AAAAATATGA
1 AAAAATA--A
*
51408140 TAATAAT-A
1 -AAAAATAA
51408148 AAAAATCAA
1 AAAAAT-AA
51408157 TCAAAAATAA
1 --AAAAATAA
51408167 AAAAATCAATA
1 AAAAAT--A-A
51408178 AAAAATAA
1 AAAAATAA
51408186 AAAAATAA
1 AAAAATAA
51408194 AAAA
1 AAAA
51408198 GGAAGAAAGA
Statistics
Matches: 56, Mismatches: 2, Indels: 20
0.72 0.03 0.26
Matches are distributed among these distances:
7 5 0.09
8 27 0.48
9 2 0.04
10 4 0.07
11 18 0.32
ACGTcount: A:0.78, C:0.04, G:0.01, T:0.17
Consensus pattern (8 bp):
AAAAATAA
Found at i:51408169 original size:19 final size:19
Alignment explanation
Indices: 51408113--51408191 Score: 94
Period size: 19 Copynumber: 4.3 Consensus size: 19
51408103 CCTTAAGACC
51408113 AAAA-CAATCAAAAATAAA
1 AAAATCAATCAAAAATAAA
*
51408131 AAAAT-ATGAT-AATAAT-AA
1 AAAATCA--ATCAAAAATAAA
51408149 AAAATCAATCAAAAATAAA
1 AAAATCAATCAAAAATAAA
*
51408168 AAAATCAATAAAAAATAAA
1 AAAATCAATCAAAAATAAA
51408187 AAAAT
1 AAAAT
51408192 AAAAAAGGAA
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
17 2 0.04
18 17 0.33
19 31 0.60
20 2 0.04
ACGTcount: A:0.75, C:0.06, G:0.01, T:0.18
Consensus pattern (19 bp):
AAAATCAATCAAAAATAAA
Found at i:51408182 original size:11 final size:11
Alignment explanation
Indices: 51408144--51408183 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
51408134 ATATGATAAT
51408144 AATAAAAAATC
1 AATAAAAAATC
*
51408155 AATCAAAAAT-
1 AATAAAAAATC
51408165 -A-AAAAAATC
1 AATAAAAAATC
51408174 AATAAAAAAT
1 AATAAAAAAT
51408184 AAAAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
8 6 0.25
9 1 0.04
10 1 0.04
11 16 0.67
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (11 bp):
AATAAAAAATC
Found at i:51408185 original size:37 final size:36
Alignment explanation
Indices: 51408113--51408189 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 36
51408103 CCTTAAGACC
*
51408113 AAAACAATCAAAAATAAAAAAATATGATAATAATAA
1 AAAACAATCAAAAATAAAAAAATATGATAAAAATAA
51408149 AAAATCAATCAAAAATAAAAAAATCA--ATAAAAAATAA
1 AAAA-CAATCAAAAATAAAAAAAT-ATGAT-AAAAATAA
51408186 AAAA
1 AAAA
51408190 ATAAAAAAGG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
36 6 0.16
37 30 0.81
38 1 0.03
ACGTcount: A:0.75, C:0.06, G:0.01, T:0.17
Consensus pattern (36 bp):
AAAACAATCAAAAATAAAAAAATATGATAAAAATAA
Found at i:51409479 original size:44 final size:44
Alignment explanation
Indices: 51409431--51409586 Score: 217
Period size: 44 Copynumber: 3.5 Consensus size: 44
51409421 ACAGATCCTA
*
51409431 TCTCCCTAAGTAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTG
* * * **
51409475 TCTCCCTAAGCAGTAGTGGAGCA-GATCGAAGA-TGGCGAATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCT-AAAGATTGTAG-ATCTTG
*
51409519 TGTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTG
51409563 TCTCCCTAAGCAGTAGTGGAGTAG
1 TCTCCCTAAGCAGTAGTGGAGTAG
51409587 ATTTAAGCCA
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
43 5 0.05
44 85 0.89
45 5 0.05
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTG
Found at i:51415422 original size:26 final size:25
Alignment explanation
Indices: 51415314--51415495 Score: 96
Period size: 24 Copynumber: 7.6 Consensus size: 25
51415304 CTCACCACAA
*
51415314 CTCGTATGAGCTTACTGATATATCAG
1 CTCGTAAGAGCTTACT-ATATATCAG
* * * *
51415340 CTCGTGAGAGTTTACTGT-TTTCAG
1 CTCGTAAGAGCTTACTATATATCAG
* ** *
51415364 CTCATTGGAGCTTACCA-AT-TCAG
1 CTCGTAAGAGCTTACTATATATCAG
51415387 CTCG-ATAGAGCTTACCTATATATCAG
1 CTCGTA-AGAGCTTA-CTATATATCAG
* * *
51415413 CTCGTAAGAGCTTATTGT-TTTCAG
1 CTCGTAAGAGCTTACTATATATCAG
* * **
51415437 CTCATTAGAGCTTAC-CGAT-TCAG
1 CTCGTAAGAGCTTACTATATATCAG
* *
51415460 CTCGTATGAGCTTAC--TGT-TCAG
1 CTCGTAAGAGCTTACTATATATCAG
*
51415482 CTCGTATGAGCTTA
1 CTCGTAAGAGCTTA
51415496 TCGATCATGA
Statistics
Matches: 121, Mismatches: 28, Indels: 18
0.72 0.17 0.11
Matches are distributed among these distances:
22 19 0.16
23 30 0.25
24 37 0.31
25 5 0.04
26 29 0.24
27 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (25 bp):
CTCGTAAGAGCTTACTATATATCAG
Found at i:51415440 original size:73 final size:74
Alignment explanation
Indices: 51415314--51415474 Score: 247
Period size: 73 Copynumber: 2.2 Consensus size: 74
51415304 CTCACCACAA
* * *
51415314 CTCGTATGAGCTTA-CTGATATATCAGCTCGTGAGAGTTTACTGTTTTCAGCTCATTGGAGCTTA
1 CTCGTATGAGCTTACCTGATATATCAGCTCGTAAGAGCTTACTGTTTTCAGCTCATTAGAGCTTA
51415378 CCAATTCAG
66 CCAATTCAG
*
51415387 CTCG-ATAGAGCTTACCT-ATATATCAGCTCGTAAGAGCTTATTGTTTTCAGCTCATTAGAGCTT
1 CTCGTAT-GAGCTTACCTGATATATCAGCTCGTAAGAGCTTACTGTTTTCAGCTCATTAGAGCTT
*
51415450 ACCGATTCAG
65 ACCAATTCAG
51415460 CTCGTATGAGCTTAC
1 CTCGTATGAGCTTAC
51415475 TGTTCAGCTC
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
72 2 0.03
73 74 0.93
74 4 0.05
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (74 bp):
CTCGTATGAGCTTACCTGATATATCAGCTCGTAAGAGCTTACTGTTTTCAGCTCATTAGAGCTTA
CCAATTCAG
Found at i:51415447 original size:50 final size:47
Alignment explanation
Indices: 51415382--51415500 Score: 129
Period size: 45 Copynumber: 2.5 Consensus size: 47
51415372 AGCTTACCAA
* *
51415382 TTCAGCTCGATAGAGCTTACCTATATATCAGCTCGTAAGAGCTTATTGTT
1 TTCAGCTCGATAGAGCTTACC--GAT-TCAGCTCGTAAGAGCTTACTGTT
*
51415432 TTCAGCTC-ATTAGAGCTTACCGATTCAGCTCGTATGAGCTTACTG--
1 TTCAGCTCGA-TAGAGCTTACCGATTCAGCTCGTAAGAGCTTACTGTT
*
51415477 TTCAGCTCG-TATGAGCTTATCGAT
1 TTCAGCTCGATA-GAGCTTACCGAT
51415501 CATGACTTGA
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
44 2 0.03
45 19 0.31
47 19 0.31
48 2 0.03
49 1 0.02
50 19 0.31
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (47 bp):
TTCAGCTCGATAGAGCTTACCGATTCAGCTCGTAAGAGCTTACTGTT
Found at i:51415483 original size:22 final size:23
Alignment explanation
Indices: 51415314--51415495 Score: 122
Period size: 23 Copynumber: 7.6 Consensus size: 23
51415304 CTCACCACAA
51415314 CTCGTATGAGCTTACTGATATATCAG
1 CTCGTATGAGCTTACTG-T-T-TCAG
*
51415340 CTCGTGA-GAGTTTACTGTTTTCAG
1 CTCGT-ATGAGCTTACTG-TTTCAG
* ***
51415364 CTCAT-TGGAGCTTACCAATTCAG
1 CTCGTAT-GAGCTTACTGTTTCAG
*
51415387 CTCG-ATAGAGCTTACCTATATATCAG
1 CTCGTAT-GAGCTTA-CTGT-T-TCAG
* *
51415413 CTCGTAAGAGCTTATTGTTTTCAG
1 CTCGTATGAGCTTACTG-TTTCAG
* * *
51415437 CTCAT-TAGAGCTTACCGATTCAG
1 CTCGTAT-GAGCTTACTGTTTCAG
51415460 CTCGTATGAGCTTACTG-TTCAG
1 CTCGTATGAGCTTACTGTTTCAG
51415482 CTCGTATGAGCTTA
1 CTCGTATGAGCTTA
51415496 TCGATCATGA
Statistics
Matches: 124, Mismatches: 21, Indels: 26
0.73 0.12 0.15
Matches are distributed among these distances:
22 19 0.15
23 34 0.27
24 34 0.27
25 4 0.03
26 31 0.25
27 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (23 bp):
CTCGTATGAGCTTACTGTTTCAG
Found at i:51421646 original size:25 final size:25
Alignment explanation
Indices: 51421618--51421687 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
51421608 CTCTTTTAAT
*
51421618 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
51421643 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
51421668 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
51421688 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:51421760 original size:20 final size:21
Alignment explanation
Indices: 51421735--51421782 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
51421725 AAATGAATAC
*
51421735 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
51421755 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
51421776 ATCATGT
1 ATCATGT
51421783 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:51428444 original size:20 final size:21
Alignment explanation
Indices: 51428419--51428466 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
51428409 AAATGAATAC
*
51428419 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
51428439 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
51428460 ATCATGT
1 ATCATGT
51428467 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:51431932 original size:53 final size:55
Alignment explanation
Indices: 51431818--51431962 Score: 181
Period size: 53 Copynumber: 2.7 Consensus size: 55
51431808 GCCATAAGTA
* * *
51431818 CATGTTAGACCATGTCAAGACGTGGCATTGATAAGTTACTATAAGGCAAAGGTCT
1 CATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTCT
* * *
51431873 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGC-AAGG-CT
1 CATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTCT
*
51431924 ACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 --CATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
51431963 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
51 2 0.03
52 4 0.05
53 40 0.51
54 1 0.01
55 31 0.40
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (55 bp):
CATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTCT
Found at i:51432222 original size:16 final size:16
Alignment explanation
Indices: 51432201--51432231 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51432191 ATAAATTTGA
51432201 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
51432217 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
51432232 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:51444203 original size:25 final size:25
Alignment explanation
Indices: 51444138--51444203 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
51444128 TCTCAAAAAT
* *
51444138 TTAATTAAA-TAAAAATTATTAATGA
1 TTAAATAAATTAAAAATTA-TAATAA
*
51444163 TTCAATAAATTGAAAAATTA-AATAA
1 TTAAATAAATT-AAAAATTATAATAA
51444188 TTAAATAAAATTAAAA
1 TTAAAT-AAATTAAAA
51444204 TTTAGTAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
25 20 0.59
26 6 0.18
27 8 0.24
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (25 bp):
TTAAATAAATTAAAAATTATAATAA
Found at i:51444776 original size:17 final size:18
Alignment explanation
Indices: 51444749--51444782 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51444739 AATTAAATAT
51444749 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
51444767 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
51444783 TATACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:51447518 original size:91 final size:92
Alignment explanation
Indices: 51447403--51447569 Score: 302
Period size: 91 Copynumber: 1.8 Consensus size: 92
51447393 CAGTCAAGTT
*
51447403 CTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGACGTAAGCCAGTGTAA-ACATGTCTG
1 CTAGTGTAAGACATGTCTAGGACATGCATCAACCTCGAGACGTAAGCCAGTGTAAGACATGTCTG
51447467 GGACATGCATCAGCCTCGAGACGTAAG
66 GGACATGCATCAGCCTCGAGACGTAAG
51447494 CTAGTGTAAGACATGTCT-GTGACATGCATCAACCTCGAGACGTAAGCCAGTGTAAGACATGTCT
1 CTAGTGTAAGACATGTCTAG-GACATGCATCAACCTCGAGACGTAAGCCAGTGTAAGACATGTCT
51447558 GGGACATGCATC
65 GGGACATGCATC
51447570 GGCTAAATGT
Statistics
Matches: 73, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
90 1 0.01
91 52 0.71
92 20 0.27
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (92 bp):
CTAGTGTAAGACATGTCTAGGACATGCATCAACCTCGAGACGTAAGCCAGTGTAAGACATGTCTG
GGACATGCATCAGCCTCGAGACGTAAG
Found at i:51447530 original size:46 final size:46
Alignment explanation
Indices: 51447405--51447569 Score: 287
Period size: 46 Copynumber: 3.6 Consensus size: 46
51447395 GTCAAGTTCT
*
51447405 AGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCC
*
51447451 AGTGTAA-ACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCC
* *
51447496 AGTGTAAGACATGTCTGTGACATGCATCAACCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCC
51447542 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
51447570 GGCTAAATGT
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 43 0.38
46 69 0.62
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCC
Found at i:51449957 original size:27 final size:26
Alignment explanation
Indices: 51449920--51450031 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
51449910 AGCATGGCTG
* *
51449920 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
51449946 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
51449974 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
51450001 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
51450028 CCAG
1 CCAG
51450032 GGTACTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:51450012 original size:54 final size:54
Alignment explanation
Indices: 51449920--51450031 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
51449910 AGCATGGCTG
* *
51449920 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
51449974 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
51450028 CCAG
1 CCAG
51450032 GGTACTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:51457764 original size:27 final size:26
Alignment explanation
Indices: 51457729--51457840 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
51457719 ACCATGGCTG
* *
51457729 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
51457755 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
51457783 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
51457810 CCAGATCAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
51457837 CCAG
1 CCAG
51457841 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:51457788 original size:54 final size:54
Alignment explanation
Indices: 51457729--51457840 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
51457719 ACCATGGCTG
* *
51457729 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGC-GTAGCCA
* *
51457783 CCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCGTAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCGTAGCCA
51457837 CCAG
1 CCAG
51457841 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.63
55 18 0.35
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCGTAGCCA
Found at i:51479392 original size:17 final size:19
Alignment explanation
Indices: 51479350--51479393 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
51479340 ATGAAATTTT
*
51479350 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
51479369 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
51479387 AA-TATTA
1 AATTATTA
51479394 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:51479475 original size:11 final size:11
Alignment explanation
Indices: 51479459--51479492 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
51479449 TTGATATTTG
51479459 AAATTATTATA
1 AAATTATTATA
51479470 AAATTATTATA
1 AAATTATTATA
*
51479481 ATTATTATTATA
1 A-AATTATTATA
51479493 TGGAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
AAATTATTATA
Found at i:51481774 original size:25 final size:25
Alignment explanation
Indices: 51481745--51481792 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
51481735 TTATAATATG
* *
51481745 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATGCCCCTAGGTA
51481770 AAAATGACCATTATGCCCCTAGG
1 AAAATGACCATTATGCCCCTAGG
51481793 GTTTAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATGCCCCTAGGTA
Found at i:51481859 original size:20 final size:20
Alignment explanation
Indices: 51481836--51481889 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
51481826 TAAACATGGT
51481836 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
51481856 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
51481876 ATGTATGATATGCA
1 ATGTATGATATGCA
51481890 GATGGTGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:51481974 original size:23 final size:23
Alignment explanation
Indices: 51481944--51482016 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
51481934 AGGAAGTGCA
51481944 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
51481967 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
51481990 AAAAGGGCTTTTACCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
51482014 AAA
1 AAA
51482017 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:51482033 original size:25 final size:24
Alignment explanation
Indices: 51481943--51482037 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
51481933 GAGGAAGTGC
51481943 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
51481967 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
51481990 AAAAGGGCTTTTACCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
51482014 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
51482038 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.37
24 29 0.46
25 11 0.17
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:51482265 original size:31 final size:31
Alignment explanation
Indices: 51482230--51482310 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
51482220 CGTTTACAGT
51482230 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
51482261 AAAGGCTTCGACCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51482292 AAAGGGCTAT-GGCCCAGTA
1 AAA-GGCT-TCGGCCCAGTA
51482311 CATGTTGAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
31 31 0.72
32 11 0.26
33 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51485287 original size:48 final size:48
Alignment explanation
Indices: 51485246--51485391 Score: 188
Period size: 48 Copynumber: 3.0 Consensus size: 48
51485236 TTACACGATG
* *
51485246 TCTCATATCGATGCCAATGCCATATCCTAGATATGGTCTTACATGGGA
1 TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
* * * * * *
51485294 TCACATGTCGATGCTAATGCCATGTCCCAAACATGATCTTACATGGGA
1 TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
51485342 TCTCATAAT-GATGCCAATGCCATGT-CTCAGACATGGTCTTACATGGGA
1 TCTCAT-ATCGATGCCAATGCCATGTCCT-AGACATGGTCTTACATGGGA
51485390 TC
1 TC
51485392 ACACATAACC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 80 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (48 bp):
TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
Found at i:51490675 original size:24 final size:25
Alignment explanation
Indices: 51490615--51490680 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 25
51490605 CTCACCACAA
*
51490615 CTCGTATGAGCTTACCAATATATCAG
1 CTCGTATGAGCTTA-CTATATATCAG
* * *
51490641 CTCATAAGAGCTTACTAT-TCTCAG
1 CTCGTATGAGCTTACTATATATCAG
51490665 CTCGTATGAGCTTACT
1 CTCGTATGAGCTTACT
51490681 GATTTTGTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 19 0.56
25 3 0.09
26 12 0.35
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (25 bp):
CTCGTATGAGCTTACTATATATCAG
Found at i:51491360 original size:18 final size:18
Alignment explanation
Indices: 51491339--51491375 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
51491329 GAGTAAACAA
*
51491339 TGCAATAACAGTAATCAG
1 TGCAATAACAGTAAGCAG
*
51491357 TGCAGTAACAGTAAGCAG
1 TGCAATAACAGTAAGCAG
51491375 T
1 T
51491376 ATGCAAGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (18 bp):
TGCAATAACAGTAAGCAG
Found at i:51491732 original size:27 final size:27
Alignment explanation
Indices: 51491701--51491910 Score: 153
Period size: 27 Copynumber: 7.8 Consensus size: 27
51491691 CATCACATAG
**
51491701 GGGCAAAACAGTCATCCTACCATATAA
1 GGGCAAAACAGTCATTTTACCATATAA
*
51491728 GGGCAAAATAGTCATTTTACC-TCATAA
1 GGGCAAAACAGTCATTTTACCAT-ATAA
*
51491755 AGGCAAAATCA-TCATTTTACCATATAA
1 GGGCAAAA-CAGTCATTTTACCATATAA
* * * *
51491782 GAGCAAAATC-GTCAATTTAACACATAA
1 GGGCAAAA-CAGTCATTTTACCATATAA
51491809 GGGCAAAACAGTCATTTTACCATATAA
1 GGGCAAAACAGTCATTTTACCATATAA
** * * **
51491836 ATG-AACAACCA-TTATTTTATCGCATAA
1 GGGCAA-AA-CAGTCATTTTACCATATAA
* * *
51491863 GGGCAAAACCA-TCATTTTAACACACAA
1 GGGCAAAA-CAGTCATTTTACCATATAA
* *
51491890 AGGCAAAATAGTCATTTTACC
1 GGGCAAAACAGTCATTTTACC
51491911 TTACAGGGGT
Statistics
Matches: 145, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
26 5 0.03
27 134 0.92
28 6 0.04
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (27 bp):
GGGCAAAACAGTCATTTTACCATATAA
Found at i:51491788 original size:54 final size:53
Alignment explanation
Indices: 51491696--51491911 Score: 190
Period size: 54 Copynumber: 4.0 Consensus size: 53
51491686 ACATACATCA
* ** *
51491696 CATAGGGGCAAAACAGTCATCCTACCATATAAGGGCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACA-TCATTTTACCATATAAGAGCAAAATAGTCATTTTACCT
* * * * *
51491750 CATAAAGGCAAAATCATCATTTTACCATATAAGAGCAAAATCGTCAATTTAACA
1 CATAAGGGCAAAA-CATCATTTTACCATATAAGAGCAAAATAGTCATTTTACCT
* * * *
51491804 CATAAGGGCAAAACAGTCATTTTACCATATAA-ATG-AACAACCA-TTATTTTATCG
1 CATAAGGGCAAAACA-TCATTTTACCATATAAGA-GCAA-AA-TAGTCATTTTACCT
*
51491858 CATAAGGGCAAAACCATCATTTTAACACACA-AAG-GCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAA-CATCATTTT-AC-CATATAAGAGCAAAATAGTCATTTTACCT
51491912 TACAGGGGTG
Statistics
Matches: 130, Mismatches: 21, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
53 6 0.05
54 111 0.85
55 10 0.08
56 3 0.02
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (53 bp):
CATAAGGGCAAAACATCATTTTACCATATAAGAGCAAAATAGTCATTTTACCT
Found at i:51491853 original size:81 final size:81
Alignment explanation
Indices: 51491724--51491911 Score: 227
Period size: 81 Copynumber: 2.3 Consensus size: 81
51491714 ATCCTACCAT
* *
51491724 ATAAGGGCAAAATAGTCATTTTACCTCATAAAGGCAAAATCATCATTTTACCATATAAGAGCAAA
1 ATAAGGGCAAAATAGTCATTTTACCTCATAAAGGCAAAACCATCATTTTACCACATAAGAGCAAA
* *
51491789 ATCGTCAATTTAACAC
66 ACCATCAATTTAACAC
* * * * * *
51491805 ATAAGGGCAAAACAGTCATTTTACCAT-ATAAATG-AACAACCATTATTTTATCGCATAAGGGCA
1 ATAAGGGCAAAATAGTCATTTTACC-TCATAAAGGCAA-AACCATCATTTTACCACATAAGAGCA
*
51491868 AAACCATCATTTTAACAC
64 AAACCATCAATTTAACAC
* *
51491886 ACAAAGGCAAAATAGTCATTTTACCT
1 ATAAGGGCAAAATAGTCATTTTACCT
51491912 TACAGGGGTG
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
80 3 0.03
81 87 0.96
82 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (81 bp):
ATAAGGGCAAAATAGTCATTTTACCTCATAAAGGCAAAACCATCATTTTACCACATAAGAGCAAA
ACCATCAATTTAACAC
Found at i:51491929 original size:27 final size:27
Alignment explanation
Indices: 51491899--51492044 Score: 100
Period size: 27 Copynumber: 5.4 Consensus size: 27
51491889 AAGGCAAAAT
*
51491899 AGTCATTTTACCTTACAGGGGTGTTAC
1 AGTCATTTTACCTTACAGGGGTATTAC
**
51491926 AGTCGCTTTACCTTACAGGGGTATTAC
1 AGTCATTTTACCTTACAGGGGTATTAC
* * **
51491953 AGTCATTATACCCTATGGGGGTATTTA-
1 AGTCATTTTACCTTACAGGGGTA-TTAC
* * * **
51491980 GGTCATTTTACCCTA-TGGGGTATTTT
1 AGTCATTTTACCTTACAGGGGTATTAC
* * * **
51492006 GGTCATTTTACCCTA-TGGGAGTATTTT
1 AGTCATTTTACCTTACAGGG-GTATTAC
51492033 AGTCATTTTACC
1 AGTCATTTTACC
51492045 CTATGAGGGT
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.02
26 25 0.25
27 72 0.71
28 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (27 bp):
AGTCATTTTACCTTACAGGGGTATTAC
Found at i:51492009 original size:26 final size:26
Alignment explanation
Indices: 51491954--51492065 Score: 161
Period size: 27 Copynumber: 4.2 Consensus size: 26
51491944 GGGTATTACA
* *
51491954 GTCATTATACCCTATGGGGGTATTTAG
1 GTCATTTTACCCTAT-GGGGTATTTTG
51491981 GTCATTTTACCCTATGGGGTATTTTG
1 GTCATTTTACCCTATGGGGTATTTTG
*
51492007 GTCATTTTACCCTATGGGAGTATTTTA
1 GTCATTTTACCCTATGGG-GTATTTTG
*
51492034 GTCATTTTACCCTATGAGGGTATGTTG
1 GTCATTTTACCCTATG-GGGTATTTTG
51492061 GTCAT
1 GTCAT
51492066 CATTTCGGCC
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
26 28 0.36
27 48 0.62
28 2 0.03
ACGTcount: A:0.20, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTTG
Found at i:51492018 original size:53 final size:54
Alignment explanation
Indices: 51491954--51492065 Score: 174
Period size: 53 Copynumber: 2.1 Consensus size: 54
51491944 GGGTATTACA
* *
51491954 GTCATTATACCCTATGGGGGTA-TTTAGGTCATTTTACCCTATG-GGGTATTTTG
1 GTCATTATACCCTATGGGAGTATTTTA-GTCATTTTACCCTATGAGGGTATGTTG
*
51492007 GTCATTTTACCCTATGGGAGTATTTTAGTCATTTTACCCTATGAGGGTATGTTG
1 GTCATTATACCCTATGGGAGTATTTTAGTCATTTTACCCTATGAGGGTATGTTG
51492061 GTCAT
1 GTCAT
51492066 CATTTCGGCC
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
53 36 0.67
54 18 0.33
ACGTcount: A:0.20, C:0.15, G:0.23, T:0.42
Consensus pattern (54 bp):
GTCATTATACCCTATGGGAGTATTTTAGTCATTTTACCCTATGAGGGTATGTTG
Found at i:51496516 original size:47 final size:47
Alignment explanation
Indices: 51496462--51496819 Score: 599
Period size: 47 Copynumber: 7.6 Consensus size: 47
51496452 TATTTGAATA
51496462 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51496509 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51496558 AATGTGAGAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
51496605 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51496652 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
51496699 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
51496746 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51496793 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
51496820 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 248 0.85
49 45 0.15
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:51496994 original size:37 final size:37
Alignment explanation
Indices: 51496938--51497016 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
51496928 CCGAGCTCTA
* *
51496938 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51496975 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51497012 AAGAC
1 AAGAC
51497017 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51500291 original size:64 final size:62
Alignment explanation
Indices: 51500174--51500300 Score: 200
Period size: 64 Copynumber: 2.0 Consensus size: 62
51500164 GAGGCCAAAA
* *
51500174 TTAGCATGGGGAAGCCATGGATAGGGCTTTTAAGATTTTCAAGCTCAATAGTAAGTCCGTTC
1 TTAGCATGGGGAAGCCAGGGATAGGGCTTTCAAGATTTTCAAGCTCAATAGTAAGTCCGTTC
* *
51500236 TTAGCATGGGGGAAGCCAGGGCTAGGGCTTTCAAGCTTTTTCAAGCTCAATAGTAAGTCCGTTC
1 TTAGCAT-GGGGAAGCCAGGGATAGGGCTTTCAAG-ATTTTCAAGCTCAATAGTAAGTCCGTTC
51500300 T
1 T
51500301 AACCCCGTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
62 7 0.12
63 24 0.41
64 28 0.47
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (62 bp):
TTAGCATGGGGAAGCCAGGGATAGGGCTTTCAAGATTTTCAAGCTCAATAGTAAGTCCGTTC
Found at i:51504838 original size:46 final size:46
Alignment explanation
Indices: 51504721--51504844 Score: 176
Period size: 46 Copynumber: 2.7 Consensus size: 46
51504711 AACCCGCCCC
* * * ** *
51504721 TAAGTGAACTTGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCA
* *
51504767 TAAGTGAACTCGGACACAACTCAACGAGTTCGAACATTCGCATCCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCA
51504813 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
51504845 GATGCTCAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCA
Found at i:51511844 original size:46 final size:44
Alignment explanation
Indices: 51511775--51511948 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 44
51511765 GTAACCTGCC
*
51511775 CCTAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
**
51511820 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTATAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* * ** *
51511870 -CTGA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCAT
*
51511913 CCGTAAGTGAACTCGTACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
51511949 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 4 0.04
46 58 0.55
47 27 0.25
48 3 0.03
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (44 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:51511889 original size:93 final size:93
Alignment explanation
Indices: 51511782--51511952 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
51511772 GCCCCTAAGT
** *
51511782 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51511847 CGAGTTCGGATGCCTAGTTATATCTGAC
66 CGAGTTCGGATGCCTAGTTATATCTGAC
* * * *
51511875 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCGTAAGTGAACTCGTACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51511940 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51511953 TCAACCATTC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTATATCTGAC
Found at i:51535445 original size:27 final size:27
Alignment explanation
Indices: 51535411--51535756 Score: 421
Period size: 27 Copynumber: 12.9 Consensus size: 27
51535401 AAATGATTAC
*
51535411 TTTGCCCTTATGGGGTAAAATGACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
*
51535438 TCTT-CCCTTATGAGGTAAAATGACTAT
1 T-TTGCCCTTATGAGGTAAAATGACTGT
*
51535465 TTTGCCCTTATG-GGTAAAATGACTAT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* *
51535491 TTTACCCTTATGAGGTAAACTGACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* * *
51535518 TTCGCCTTTATGGGGTAAAATGACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* *
51535545 TTTGCCCTTGT-AGGGTAAAATGACAGT
1 TTTGCCCTTATGA-GGTAAAATGACTGT
* * *
51535572 TTTGCTCTTATAAGGTAAAATAACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
51535599 TTTGCCCTTATGAGGTAAAATGACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* * * *
51535626 TTTGCCCTTTTGGGGTAAAATGATTAT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* * *
51535653 TTTGCTCTTATGAGGTAAAATGATTAT
1 TTTGCCCTTATGAGGTAAAATGACTGT
51535680 TTTGCCCTTATGAGGTAAAATGACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* *
51535707 TTTGCCCTTATGTGGTAAAATGATTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* *
51535734 TTTTCCCTT-TTATGGTAAAATGA
1 TTTGCCCTTATGA-GGTAAAATGA
51535757 ATATTTTACC
Statistics
Matches: 276, Mismatches: 37, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
26 28 0.10
27 245 0.89
28 3 0.01
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.40
Consensus pattern (27 bp):
TTTGCCCTTATGAGGTAAAATGACTGT
Found at i:51538554 original size:43 final size:42
Alignment explanation
Indices: 51538397--51538562 Score: 147
Period size: 43 Copynumber: 3.9 Consensus size: 42
51538387 GGTTATTGAA
* * **
51538397 ATGTGATTACATGTAAGACCATGTCTGGGAAAGTGCCATTGT
1 ATGTGATTACATGTAAGACCATGTTTGGGAAAGTGGCATCAT
* * * *
51538439 ATTGTGATTACGA-GTAAGACCATGTTCGGGACATTGGTATCAT
1 A-TGTGATTAC-ATGTAAGACCATGTTTGGGAAAGTGGCATCAT
* * * * *
51538482 ATTTGATTTCGTGTAAAACCCTGTTTGGGAAAGTGGCATCAAT
1 ATGTGATTACATGTAAGACCATGTTTGGGAAAGTGGCATC-AT
* * *
51538525 ATGTGATAACATGTAAGACCATATTTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTTTGGGAAAGTGGCAT
51538563 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 25, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
42 36 0.38
43 58 0.61
44 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.33
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTTTGGGAAAGTGGCATCAT
Found at i:51540948 original size:47 final size:49
Alignment explanation
Indices: 51540739--51541058 Score: 186
Period size: 48 Copynumber: 6.7 Consensus size: 49
51540729 GGGATAAGTT
* *
51540739 GCCGATGCCATGTCCCAGACATTGTCTTACATTGGCTAGCATCATCGAG
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCATCGAG
* * * * * * * *
51540788 GCGGATGCCATGTCCTAGACATGGTCTTATACTAGCTCTTGTAT-ATACG-T
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCT-AT-CATCAT-CGAG
* * * * * *
51540838 GCTGATG-CATGTCCTAGACA-TATCTTACACTAGC-A-CAAC-TCTTA-
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCATC-GAG
* * * *
51540882 GTCGAT-ACGTGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAG
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCATCGAG
* * *
51540929 GCCGATG-CATGTCCTAGACA-TGTCTTACACTGGC-ACTCATC-TCTAC
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTA-TCATCATCGAG
* * * * *
51540975 ACCGATGCCATGTCCCAGACATGGTCTTACACTGG-AACTCATC-TCTAC
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTA-TCATCATCGAG
** * *
51541023 ATCGATGCCATGTCCCAGACATGGTCTTACATTGGC
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGC
51541059 ACTCATAATG
Statistics
Matches: 216, Mismatches: 38, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.00
44 28 0.13
45 1 0.00
46 14 0.06
47 48 0.22
48 68 0.31
49 44 0.20
50 8 0.04
51 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCATCGAG
Found at i:51541016 original size:48 final size:48
Alignment explanation
Indices: 51540891--51541064 Score: 230
Period size: 48 Copynumber: 3.7 Consensus size: 48
51540881 AGTCGATACG
* * **
51540891 TGTCCCAGACA-CGTCTTACACTGGCTA-TCATCATCGAGGCCGATG-CA
1 TGTCCCAGACATGGTCTTACACTGGC-ACTCATC-TCTACACCGATGCCA
*
51540938 TGTCCTAGACAT-GTCTTACACTGGCACTCATCTCTACACCGATGCCA
1 TGTCCCAGACATGGTCTTACACTGGCACTCATCTCTACACCGATGCCA
* *
51540985 TGTCCCAGACATGGTCTTACACTGGAACTCATCTCTACATCGATGCCA
1 TGTCCCAGACATGGTCTTACACTGGCACTCATCTCTACACCGATGCCA
*
51541033 TGTCCCAGACATGGTCTTACATTGGCACTCAT
1 TGTCCCAGACATGGTCTTACACTGGCACTCAT
51541065 AATGTGGCTG
Statistics
Matches: 114, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
46 10 0.09
47 41 0.36
48 63 0.55
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.27
Consensus pattern (48 bp):
TGTCCCAGACATGGTCTTACACTGGCACTCATCTCTACACCGATGCCA
Found at i:51541028 original size:141 final size:141
Alignment explanation
Indices: 51540741--51541084 Score: 333
Period size: 141 Copynumber: 2.4 Consensus size: 141
51540731 GATAAGTTGC
* * * *
51540741 CGATGCCATGTCCCAGACATTGTCTTACATTGGCTAGCATCATCGAGGCGGATGCCATGTCCTAG
1 CGATGACATGTCCCAGACATCGTCTTACATTGGCTATCATCATCGAGGCCGATG-CATGTCCTAG
* * ** * * * *
51540806 ACATGGTCTTATACTAGCTCTTGTATATACGTGCTGATGCATGTCCTAGACATATCTTACACTAG
65 ACATGGTCTTACACTAGCACTCATATATACG-ACCGATGCATGTCCCAGACATATCTTACACTAA
*
51540871 CACAACTCTTAGT
129 CACAACTCTTAAT
* *
51540884 CGAT-ACGTGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGCATGTCCTAGA
1 CGATGACATGTCCCAGACATCGTCTTACATTGGCTATCATCATCGAGGCCGATGCATGTCCTAGA
* * * *
51540947 CAT-GTCTTACACTGGCACTCATCTCTAC-ACCGATGCCATGTCCCAGACATGGTCTTACACTGG
66 CATGGTCTTACACTAGCACTCATATATACGACCGATG-CATGTCCCAGACAT-ATCTTACACT--
* *
51541010 AACTCATCTC-TACAT
127 AACACAACTCTTA-AT
* * * * *
51541025 CGATGCCATGTCCCAGACATGGTCTTACATTGGC-ACTCATAAT-GTGGCTGATGCATGTCC
1 CGATGACATGTCCCAGACATCGTCTTACATTGGCTA-TCATCATCGAGGCCGATGCATGTCC
51541085 ACAACATGGA
Statistics
Matches: 165, Mismatches: 28, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
137 5 0.03
138 13 0.08
139 27 0.16
140 16 0.10
141 42 0.25
142 40 0.24
143 22 0.13
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (141 bp):
CGATGACATGTCCCAGACATCGTCTTACATTGGCTATCATCATCGAGGCCGATGCATGTCCTAGA
CATGGTCTTACACTAGCACTCATATATACGACCGATGCATGTCCCAGACATATCTTACACTAACA
CAACTCTTAAT
Found at i:51541078 original size:48 final size:46
Alignment explanation
Indices: 51540891--51541093 Score: 175
Period size: 48 Copynumber: 4.3 Consensus size: 46
51540881 AGTCGATACG
*
51540891 TGTCCCAGACA-CGTCTTACACTGGCTA-TCATCATC-GAGGCCGATGCA
1 TGTCCCAGACATGGTCTTACACTGGC-ACTCAT-ATCTGA--CCGATGCA
* * *
51540938 TGTCCTAGACAT-GTCTTACACTGGCACTCATCTCTACACCGATGCCA
1 TGTCCCAGACATGGTCTTACACTGGCACTCATATCT-GACCGATG-CA
* *
51540985 TGTCCCAGACATGGTCTTACACTGGAACTCATCTCT-ACATCGATGCCA
1 TGTCCCAGACATGGTCTTACACTGGCACTCATATCTGAC--CGATG-CA
* * * *
51541033 TGTCCCAGACATGGTCTTACATTGGCACTCATAATGTGGCTGATGCA
1 TGTCCCAGACATGGTCTTACACTGGCACTCAT-ATCTGACCGATGCA
51541080 TGTCCACA-ACATGG
1 TGTCC-CAGACATGG
51541094 AAATATCGAG
Statistics
Matches: 134, Mismatches: 11, Indels: 22
0.80 0.07 0.13
Matches are distributed among these distances:
46 11 0.08
47 53 0.40
48 67 0.50
49 2 0.01
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
TGTCCCAGACATGGTCTTACACTGGCACTCATATCTGACCGATGCA
Found at i:51562246 original size:50 final size:50
Alignment explanation
Indices: 51562161--51562414 Score: 235
Period size: 50 Copynumber: 5.1 Consensus size: 50
51562151 GCTAAATGAC
* * * * * **
51562161 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGAATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTGGAT
* * * *
51562211 CTTGAATATTCGGCCATGA-AGGTATGCACAAATGTGATATTATATTTGAAT
1 CTTGAATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTA-AATTGGAT
* * * * * *
51562262 -TTGTATATTCTGCCATATAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGAATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTGGAT
* *
51562311 CTT-ACATATTCGACCATATAGGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGA-ATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTGGAT
* * * * * *
51562361 CTTGCATATTCAGCCATATAGGTAAGCTCATATTTGATATTATATTTGAT
1 CTTGAATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTGGAT
51562411 CTTG
1 CTTG
51562415 TATAATTGGC
Statistics
Matches: 167, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
49 6 0.04
50 155 0.93
51 6 0.04
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (50 bp):
CTTGAATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTGGAT
Found at i:51562340 original size:100 final size:100
Alignment explanation
Indices: 51562161--51562414 Score: 309
Period size: 100 Copynumber: 2.5 Consensus size: 100
51562151 GCTAAATGAC
* * * * * *
51562161 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGATCTTGAATATTCGGCC
1 CTTGTATATTCAGCCATATAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATTCGACC
* *
51562226 ATGAAGGTATGCACAAATGTGATATTATATTTGAAT
66 ATGAAGGTAAGCACAAATGTGATATTAAATTTG-AT
* * *
51562262 -TTGTATATTCTGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTT-ACATATTCGAC
1 CTTGTATATTCAGCCATATAGGTAAGTACATATGTGATGTTATATTTGATCTTGA-ATATTCGAC
*
51562325 CAT-ATAGGTAAGCACATATGTGATATTAAATTTGAT
65 CATGA-AGGTAAGCACAAATGTGATATTAAATTTGAT
* * *
51562361 CTTGCATATTCAGCCATATAGGTAAGCT-CATATTTGATATTATATTTGATCTTG
1 CTTGTATATTCAGCCATATAGGTAAG-TACATATGTGATGTTATATTTGATCTTG
51562415 TATAATTGGC
Statistics
Matches: 131, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
99 4 0.03
100 126 0.96
101 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (100 bp):
CTTGTATATTCAGCCATATAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATTCGACC
ATGAAGGTAAGCACAAATGTGATATTAAATTTGAT
Found at i:51568850 original size:49 final size:50
Alignment explanation
Indices: 51568719--51568866 Score: 185
Period size: 50 Copynumber: 3.0 Consensus size: 50
51568709 ATGATCTATT
* **
51568719 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
1 GTGAGGTCGCAGGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
* *
51568769 GTGAGGTCAC-GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACT-
1 GTGAGGTCGCAG-GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG
* * *
51568819 GT-TGGTCGCAGGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 GTGAGGTCGCAGGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
51568867 AGCTTCAGCT
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
48 1 0.01
49 38 0.45
50 45 0.53
51 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (50 bp):
GTGAGGTCGCAGGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
Found at i:51571445 original size:14 final size:15
Alignment explanation
Indices: 51571421--51571449 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51571411 TTTTATTGTG
51571421 TTTATTGTGTGTGAA
1 TTTATTGTGTGTGAA
51571436 TTTA-TGTGTGTGAA
1 TTTATTGTGTGTGAA
51571450 AATCTTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.52
Consensus pattern (15 bp):
TTTATTGTGTGTGAA
Found at i:51573832 original size:27 final size:27
Alignment explanation
Indices: 51573780--51573888 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 27
51573770 CATGGCTACT
* ** *
51573780 AGAACAGTTAA-TGTGATAGAGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
51573806 AGAACAGATAATTGTGGTAGAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
51573833 AAAACAGAT-ATATGTGGCAGAGCCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
* *
51573860 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
51573887 AG
1 AG
51573889 GACGTTTCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 12 0.17
27 58 0.81
28 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:51575150 original size:29 final size:30
Alignment explanation
Indices: 51575099--51575160 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 30
51575089 GGCTATGGAG
* *
51575099 AAAAGAAGAGGAGAAAGTAGATGGAGAGAAA
1 AAAAAAAGAGGAGAAAG-AGATGGACAGAAA
* *
51575130 AAAAAAAGAGGAGGAAG-GATGGTCAGAAA
1 AAAAAAAGAGGAGAAAGAGATGGACAGAAA
51575159 AA
1 AA
51575161 CGGCACAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 12 0.44
31 15 0.56
ACGTcount: A:0.58, C:0.02, G:0.34, T:0.06
Consensus pattern (30 bp):
AAAAAAAGAGGAGAAAGAGATGGACAGAAA
Found at i:51575983 original size:50 final size:50
Alignment explanation
Indices: 51575745--51575971 Score: 251
Period size: 50 Copynumber: 4.5 Consensus size: 50
51575735 CGTTACATGT
* * * * * *
51575745 ACATATGTGATGTTGTATTGGATCTTGAAAATTCGGCCATGA-AGGTATGC
1 ACATATGTGATATTATATTTGATCTTGCATATTCGGCCAT-ATAGGTAAGC
* * * * *
51575795 ACAAATGTGATATTATATTTGAAT-TTGTATATCCGGCCATATAAGTAAGT
1 ACATATGTGATATTATATTTG-ATCTTGCATATTCGGCCATATAGGTAAGC
* * * * *
51575845 ACATATATGATGTTAAATTTGATCTTGCATATTCAGCCATATTGGTAAGC
1 ACATATGTGATATTATATTTGATCTTGCATATTCGGCCATATAGGTAAGC
* *
51575895 ACATATGTGACATTAAATTTGATCTTGCATATTCGGCCATATAGGTAAGC
1 ACATATGTGATATTATATTTGATCTTGCATATTCGGCCATATAGGTAAGC
*
51575945 TCATATGTGATATTATATTTGATCTTG
1 ACATATGTGATATTATATTTGATCTTG
51575972 TATAATTGGC
Statistics
Matches: 146, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 3 0.02
50 141 0.97
51 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (50 bp):
ACATATGTGATATTATATTTGATCTTGCATATTCGGCCATATAGGTAAGC
Done.