Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 164 of 325
Found at i:51849411 original size:43 final size:41
Alignment explanation
Indices: 51849359--51849500 Score: 167
Period size: 43 Copynumber: 3.4 Consensus size: 41
51849349 AAAGTGTGAT
51849359 TTCATGTAAGACCATGTCTGGGACATTGGCATCAGTATAAGA
1 TTCATGTAAGACCATGTCTGGGACATTGGCATC-GTATAAGA
*
51849401 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAAGA
1 TT-CATGTAAGACCATGTCTGGGACATTGGCATCGTATAAGA
* * * * * **
51849443 TTCATGTAAGACCCTATCTAGGACAGTGGTATCGATATGTGA
1 TTCATGTAAGACCATGTCTGGGACATTGGCATCG-TATAAGA
*
51849485 TAGCATGTAAGACCAT
1 T-TCATGTAAGACCAT
51849501 ATCCAGGATA
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
41 26 0.30
42 18 0.21
43 42 0.49
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (41 bp):
TTCATGTAAGACCATGTCTGGGACATTGGCATCGTATAAGA
Found at i:51855133 original size:65 final size:65
Alignment explanation
Indices: 51855053--51855189 Score: 265
Period size: 65 Copynumber: 2.1 Consensus size: 65
51855043 CAATAGGGAC
*
51855053 TAAATTGTAAAAATTGTAAATGTTAGGGGTAAAATGGTAATTTTTCCATTTATGTGTTTTTGGAT
1 TAAATTGTAAAAATTGTAAATGTCAGGGGTAAAATGGTAATTTTTCCATTTATGTGTTTTTGGAT
51855118 TAAATTGTAAAAATTGTAAATGTCAGGGGTAAAATGGTAATTTTTCCATTTATGTGTTTTTGGAT
1 TAAATTGTAAAAATTGTAAATGTCAGGGGTAAAATGGTAATTTTTCCATTTATGTGTTTTTGGAT
51855183 TAAATTG
1 TAAATTG
51855190 AATGAAAATA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 71 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.44
Consensus pattern (65 bp):
TAAATTGTAAAAATTGTAAATGTCAGGGGTAAAATGGTAATTTTTCCATTTATGTGTTTTTGGAT
Found at i:51866063 original size:45 final size:46
Alignment explanation
Indices: 51865999--51866121 Score: 223
Period size: 47 Copynumber: 2.7 Consensus size: 46
51865989 GGATGGTTGA
51865999 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTG-ATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAATGTAACTAG
51866044 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTG-AATGTAACTAG
51866091 GCATCCGAACTCGTTGAGTTGAGTCC-AGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
51866122 ACTTAGGGGC
Statistics
Matches: 76, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
45 35 0.46
46 5 0.07
47 36 0.47
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:51880547 original size:34 final size:35
Alignment explanation
Indices: 51880494--51880561 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
51880484 CCTAGCTACA
* *
51880494 GTCTCAGTCTTCTAAAGTTTTCAGT-TTTCCCTAAT
1 GTCTCAATCTTCTAAAG-TTTCAGTATTACCCTAAT
*
51880529 GTCTCAAT-TTCTACAGTTTCAGTATTACCCTAA
1 GTCTCAATCTTCTAAAGTTTCAGTATTACCCTAA
51880562 CTACAGAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 7 0.24
34 15 0.52
35 7 0.24
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.43
Consensus pattern (35 bp):
GTCTCAATCTTCTAAAGTTTCAGTATTACCCTAAT
Found at i:51881551 original size:34 final size:35
Alignment explanation
Indices: 51881500--51881571 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
51881490 ATTCTGTAGT
*
51881500 TAGGGTAATACTGAAACTGTA-AAAACTGAGACAG
1 TAGGGTAAAACTGAAACTGTAGAAAACTGAGACAG
* * *
51881534 TAGGG-AAAACTGAAAACTTTAGAAGACTGAGACTG
1 TAGGGTAAAACTG-AAACTGTAGAAAACTGAGACAG
51881569 TAG
1 TAG
51881572 CTAGGATACG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 6 0.19
34 12 0.38
35 14 0.44
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.21
Consensus pattern (35 bp):
TAGGGTAAAACTGAAACTGTAGAAAACTGAGACAG
Found at i:51883779 original size:46 final size:46
Alignment explanation
Indices: 51883617--51883791 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
51883607 TGTAACCCGC
* * *
51883617 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
51883663 TCATAAGTGAACTCAGACTCAACTCAACGAGCTC-GA-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
51883709 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51883756 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
51883792 GTGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 29 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:51889172 original size:28 final size:28
Alignment explanation
Indices: 51889139--51889195 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
51889129 CCATTAACCC
*
51889139 ATGTATGCAAAATTACCAT-TATACCCCT
1 ATGTATGCAAAATGACC-TCTATACCCCT
*
51889167 ATGTATGCTAAATGACCTCTATACCCCT
1 ATGTATGCAAAATGACCTCTATACCCCT
51889195 A
1 A
51889196 GGGTTAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.32
Consensus pattern (28 bp):
ATGTATGCAAAATGACCTCTATACCCCT
Found at i:51889342 original size:28 final size:27
Alignment explanation
Indices: 51889301--51889390 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
51889291 AGGAAGCGTC
51889301 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
51889329 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
51889356 CTAGTGGCACTGCCACAACATATCTGTAT
1 CTGGTGGCACTGCCACAA-ATATCTGT-T
51889385 CTGGTG
1 CTGGTG
51889391 ACTCTGTTAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.45
29 6 0.11
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:51889362 original size:27 final size:27
Alignment explanation
Indices: 51889311--51889382 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
51889301 CTGGTGGCTA
* *
51889311 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTAGTGGCAC
*
51889339 TGCCACATATATCTGTTCTAGTGGCAC
1 TGCCACAAATATCTGTTCTAGTGGCAC
51889366 TGCCACAACATATCTGT
1 TGCCACAA-ATATCTGT
51889383 ATCTGGTGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTAGTGGCAC
Found at i:51890502 original size:11 final size:10
Alignment explanation
Indices: 51890474--51890507 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
51890464 AGCCTGTAAG
51890474 TATTCTGAAT
1 TATTCTGAAT
*
51890484 TTTTCTGAAT
1 TATTCTGAAT
51890494 ATATTCTGAAT
1 -TATTCTGAAT
51890505 TAT
1 TAT
51890508 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:51897038 original size:28 final size:28
Alignment explanation
Indices: 51897006--51897070 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
51896996 ATTTACTAGA
*
51897006 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
51897034 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
51897062 ATACCCCTA
1 ATACCCCTA
51897071 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:51897234 original size:27 final size:27
Alignment explanation
Indices: 51897176--51897265 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
51897166 AGGAAGCATC
51897176 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
51897204 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
51897231 CTGGTGGCACTGCCACAACATATCTGTAT
1 CTGGTGGCACTGCCACAA-ATATCTGT-T
51897260 CTGGTG
1 CTGGTG
51897266 ACTCTATCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:51897276 original size:29 final size:28
Alignment explanation
Indices: 51897188--51897276 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 28
51897178 GGTGGCTATG
* * *
51897188 CCACAA-ATTATCTGTTCTGGTGGCCCTG
1 CCACAACA-TATCTGTTCTGGTGACACTA
* * *
51897216 CCAC-ATATATCTGTTCTGGTGGCACTG
1 CCACAACATATCTGTTCTGGTGACACTA
*
51897243 CCACAACATATCTGTATCTGGTGACTCTA
1 CCACAACATATCTGT-TCTGGTGACACTA
*
51897272 TCACA
1 CCACA
51897277 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
27 24 0.46
28 14 0.27
29 14 0.27
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.31
Consensus pattern (28 bp):
CCACAACATATCTGTTCTGGTGACACTA
Found at i:51897284 original size:55 final size:56
Alignment explanation
Indices: 51897176--51897290 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
51897166 AGGAAGCATC
* *
51897176 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTACCACATATATCTGTAT
* * *
51897231 CTGGTGGC-ACTGCCACAACA-TATCTGTATCTGGTGACTCTATCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAA-ATTATCTGT-TCTGGTGACCCTACCACATATATCTGTAT
51897287 CTGG
1 CTGG
51897291 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTACCACATATATCTGTAT
Found at i:51905553 original size:25 final size:25
Alignment explanation
Indices: 51905525--51905575 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
51905515 CACTTATAAT
* *
51905525 GTGAAAATGACCATTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
51905550 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
51905575 G
1 G
51905576 GATGTGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:51905628 original size:10 final size:10
Alignment explanation
Indices: 51905615--51905653 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
51905605 CTATTTTATA
*
51905615 CATGATTTGC
1 CATGATATGC
*
51905625 CATGATATGTA
1 CATGATATG-C
51905636 CATGATATGC
1 CATGATATGC
51905646 CATGATAT
1 CATGATAT
51905654 ATTCATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (10 bp):
CATGATATGC
Found at i:51905637 original size:21 final size:21
Alignment explanation
Indices: 51905613--51905653 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
51905603 TACTATTTTA
*
51905613 TACATGATTTGCCATGATATG
1 TACATGATATGCCATGATATG
51905634 TACATGATATGCCATGATAT
1 TACATGATATGCCATGATAT
51905654 ATTCATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37
Consensus pattern (21 bp):
TACATGATATGCCATGATATG
Found at i:51905756 original size:24 final size:24
Alignment explanation
Indices: 51905698--51905767 Score: 95
Period size: 25 Copynumber: 2.9 Consensus size: 24
51905688 GGAGGAAGTG
* *
51905698 CAAAAGGGCTTTGCCCTAGTTTAC
1 CAAAAGGGCTTTGCCCCAGTTTAA
51905722 CGAAAAGGGCTTTGCCCCAGTTTAA
1 C-AAAAGGGCTTTGCCCCAGTTTAA
* *
51905747 CAAAAAGGCTTTACCCCAGTT
1 CAAAAGGGCTTTGCCCCAGTT
51905768 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAA
Found at i:51905779 original size:24 final size:23
Alignment explanation
Indices: 51905724--51905780 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
51905714 TAGTTTACCG
*
51905724 AAAAG-GGCTTTGCCCCAGTTTA
1 AAAAGAGGCTTTACCCCAGTTTA
* *
51905746 ACAAAAAGGCTTTACCCCAGTTATT
1 A-AAAGAGGCTTTACCCCAGTT-TA
51905771 AAAAGAGGCT
1 AAAAGAGGCT
51905781 AGGCCTCCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 1 0.04
23 3 0.11
24 22 0.79
25 2 0.07
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (23 bp):
AAAAGAGGCTTTACCCCAGTTTA
Found at i:51913494 original size:25 final size:25
Alignment explanation
Indices: 51913466--51913516 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
51913456 CCCTTATAAT
* *
51913466 GTGAAAATGACCATTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
51913491 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
51913516 G
1 G
51913517 GATGTGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:51913569 original size:10 final size:10
Alignment explanation
Indices: 51913556--51913590 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
51913546 CTGTTTTATA
51913556 CATGATATGC
1 CATGATATGC
51913566 CATGATATGC
1 CATGATATGC
51913576 ACATGATATGC
1 -CATGATATGC
51913587 CATG
1 CATG
51913591 GTATATTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (10 bp):
CATGATATGC
Found at i:51913604 original size:18 final size:18
Alignment explanation
Indices: 51913581--51913620 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
51913571 TATGCACATG
*
51913581 ATATGCCATGGTATATTC
1 ATATGCCATGATATATTC
51913599 ATATGCCATGATATATTC
1 ATATGCCATGATATATTC
51913617 ATAT
1 ATAT
51913621 ATGCATGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (18 bp):
ATATGCCATGATATATTC
Found at i:51913733 original size:23 final size:24
Alignment explanation
Indices: 51913657--51913739 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
51913647 GGAGGAAGTG
* *
51913657 CAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAAGGCTTTGCCCCAGTTTAT
*
51913681 CGAAAAGGACTTTGCCCCAGTTTAT
1 CAAAAAGG-CTTTGCCCCAGTTTAT
*
51913706 CAAAAAGGCTTTTCCCCAG-TTAT
1 CAAAAAGGCTTTGCCCCAGTTTAT
*
51913729 TAAAAGAGGCT
1 CAAAA-AGGCT
51913740 ACGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
23 8 0.16
24 21 0.41
25 22 0.43
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (24 bp):
CAAAAAGGCTTTGCCCCAGTTTAT
Found at i:51934226 original size:34 final size:34
Alignment explanation
Indices: 51934155--51934227 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
51934145 CATACTATAT
* * *
51934155 TGAAATGGTCTAAGGCCCAGACTGCCTCTGGTAC
1 TGAAATGGGCTAAGGCCCAGACTGCATCTGATAC
* *
51934189 TGAAATGGGCTTAGGCCCAGACTG-ATACTGATTC
1 TGAAATGGGCTAAGGCCCAGACTGCAT-CTGATAC
51934223 TGAAA
1 TGAAA
51934228 AAGGGGTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
33 1 0.03
34 32 0.97
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (34 bp):
TGAAATGGGCTAAGGCCCAGACTGCATCTGATAC
Found at i:51934599 original size:29 final size:29
Alignment explanation
Indices: 51934557--51934616 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
51934547 TATTTTTAAG
51934557 AAAGCACAAACCAATGTTTTTCTAAAATC
1 AAAGCACAAACCAATGTTTTTCTAAAATC
51934586 AAAGCACAAACCAATGTTTTTCTAAAATC
1 AAAGCACAAACCAATGTTTTTCTAAAATC
51934615 AA
1 AA
51934617 CACGCTTAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (29 bp):
AAAGCACAAACCAATGTTTTTCTAAAATC
Found at i:51938952 original size:75 final size:75
Alignment explanation
Indices: 51938807--51938952 Score: 204
Period size: 75 Copynumber: 1.9 Consensus size: 75
51938797 ATTACTCGGT
* ** *
51938807 GATATTGAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAGTGTTTGGGCCTAGTGCTAGTCGG
1 GATATTGAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAGTGTTTGGGCCCAGCACTAGTCAG
51938872 CTATACTGAC
66 CTATACTGAC
* * *
51938882 GATATTGAGTGTGAGCCCAGCTCTAGTTGGATAAACCAATTA-TGTTTGTGCCCAGCACTAGTCA
1 GATATTGAATGTGAGCCCAGCTCTAGTTGGATAAACCAA-CAGTGTTTGGGCCCAGCACTAGTCA
*
51938946 GTTATAC
65 GCTATAC
51938953 CGATGATTGT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
75 61 0.98
76 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (75 bp):
GATATTGAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAGTGTTTGGGCCCAGCACTAGTCAG
CTATACTGAC
Found at i:51948158 original size:20 final size:20
Alignment explanation
Indices: 51948121--51948163 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
51948111 ATTGAAATTC
* *
51948121 AAATTACTGATTATATGATT
1 AAATTACTGATTACATGAAT
51948141 AAATTACT-ATTTACATGAAT
1 AAATTACTGA-TTACATGAAT
51948161 AAA
1 AAA
51948164 AGTGAAATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (20 bp):
AAATTACTGATTACATGAAT
Found at i:51948514 original size:23 final size:23
Alignment explanation
Indices: 51948471--51948573 Score: 97
Period size: 23 Copynumber: 4.5 Consensus size: 23
51948461 TCAACTTGTA
*
51948471 AGAGCTTACT-ATTTTCAGCTCATT
1 AGAGCTTACTGA--TTCAGCTCAAT
* *
51948495 GGAGCTTACTGATTCAGCTC-GT
1 AGAGCTTACTGATTCAGCTCAAT
51948517 ATGAGCTTACTG-TTCAGCTCAAT
1 A-GAGCTTACTGATTCAGCTCAAT
* *
51948540 AAAGCTTAC-CATTTCAGCTCAAT
1 AGAGCTTACTGA-TTCAGCTCAAT
51948563 AGAGCTTACTG
1 AGAGCTTACTG
51948574 TTTATCAGGT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
22 16 0.25
23 39 0.60
24 9 0.14
25 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (23 bp):
AGAGCTTACTGATTCAGCTCAAT
Found at i:51948545 original size:22 final size:22
Alignment explanation
Indices: 51948484--51948575 Score: 98
Period size: 23 Copynumber: 4.1 Consensus size: 22
51948474 GCTTACTATT
* *
51948484 TTCAGCTCATTGGAGCTTACTG
1 TTCAGCTCAATAGAGCTTACTG
*
51948506 ATTCAGCTC-GTATGAGCTTACTG
1 -TTCAGCTCAATA-GAGCTTACTG
*
51948529 TTCAGCTCAATAAAGCTTACCAT-
1 TTCAGCTCAATAGAGCTTA-C-TG
51948552 TTCAGCTCAATAGAGCTTACTG
1 TTCAGCTCAATAGAGCTTACTG
51948574 TT
1 TT
51948576 TATCAGGTGA
Statistics
Matches: 59, Mismatches: 5, Indels: 11
0.79 0.07 0.15
Matches are distributed among these distances:
21 1 0.02
22 18 0.31
23 39 0.66
24 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (22 bp):
TTCAGCTCAATAGAGCTTACTG
Found at i:51951201 original size:47 final size:45
Alignment explanation
Indices: 51951090--51951211 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 45
51951080 CATTTGTGTA
51951090 AGCTAGTGTAAGACATGTCTGGGACAT-GCATCGCCCACATTATGAG
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCG--CACATTATGAG
*
51951136 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCATTGA-GACG
1 AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGCACATT-ATGA-G
*
51951182 AGTGCTAGTGTAAGGCATGTCTGGGACATG
1 A--GCTAGTGTAAGACATGTCTGGGACATG
51951212 CTTCAGCCTC
Statistics
Matches: 68, Mismatches: 2, Indels: 11
0.84 0.02 0.14
Matches are distributed among these distances:
45 6 0.09
46 16 0.24
47 29 0.43
48 17 0.25
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGGCATCGCACATTATGAG
Found at i:51951247 original size:46 final size:46
Alignment explanation
Indices: 51951090--51951308 Score: 164
Period size: 46 Copynumber: 4.7 Consensus size: 46
51951080 CATTTGTGTA
* **
51951090 AGCTAGTGTAAGACATGTCTGGGACATGCATCGCC-C-ACATTATGAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGA-CGT-AG
* *
51951136 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AG
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-GCCTCGAGACGTAG
* * *
51951184 TGCTAGTGTAAGGCATGTCTGGGACATGCTTCAGCCTCGAGACGTA-
1 AGCTAGTGTAAGACATGTCTGGGACATGCATC-GCCTCGAGACGTAG
* ** * * *
51951230 AGCCAGTGTAAGACATGTCTGACACATGAATCGGCTACGAGATGT-G
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGCCT-CGAGACGTAG
* *
51951276 -TC-AGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
51951309 GCACAGATAT
Statistics
Matches: 138, Mismatches: 25, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
44 9 0.07
45 15 0.11
46 63 0.46
47 29 0.21
48 18 0.13
49 2 0.01
51 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGACGTAG
Found at i:51953216 original size:23 final size:23
Alignment explanation
Indices: 51953190--51953304 Score: 67
Period size: 23 Copynumber: 5.0 Consensus size: 23
51953180 GAACCATATC
51953190 GGGAAGCTCACGAAAAGCCTATA
1 GGGAAGCTCACGAAAAGCCTATA
* *
51953213 GGGAAGCTC-CGGATAGCCATATA
1 GGGAAGCTCACGAAAAGCC-TATA
* * ** *
51953236 TCGGGAAGTTCAAG-CGAGCACTATC
1 --GGGAAGCTCACGAAAAGC-CTATA
* * *
51953261 GGGAAGCTCACAAAAAACCTATC
1 GGGAAGCTCACGAAAAGCCTATA
*
51953284 GGGAAGCTC-CGAATAG-CTATA
1 GGGAAGCTCACGAAAAGCCTATA
51953305 TATCGGGAAG
Statistics
Matches: 69, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
21 4 0.06
22 11 0.16
23 36 0.52
24 2 0.03
25 14 0.20
26 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.17
Consensus pattern (23 bp):
GGGAAGCTCACGAAAAGCCTATA
Found at i:51953261 original size:71 final size:71
Alignment explanation
Indices: 51953186--51953317 Score: 219
Period size: 71 Copynumber: 1.9 Consensus size: 71
51953176 CAAAGAACCA
* * *
51953186 TATCGGGAAGCTCACGAAAAGCCTATAGGGAAGCTCCGGATAGCCATATATCGGGAAGTTCAAGC
1 TATCGGGAAGCTCACAAAAAACCTATAGGGAAGCTCCGAATAGCCATATATCGGGAAGTTCAAGC
51953251 GAGCAC
66 GAGCAC
* *
51953257 TATCGGGAAGCTCACAAAAAACCTATCGGGAAGCTCCGAATAGCTATATATCGGGAAGTTC
1 TATCGGGAAGCTCACAAAAAACCTATAGGGAAGCTCCGAATAGCCATATATCGGGAAGTTC
51953318 TTAAGGGCTA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (71 bp):
TATCGGGAAGCTCACAAAAAACCTATAGGGAAGCTCCGAATAGCCATATATCGGGAAGTTCAAGC
GAGCAC
Found at i:51955450 original size:3 final size:3
Alignment explanation
Indices: 51955436--51955515 Score: 82
Period size: 3 Copynumber: 28.3 Consensus size: 3
51955426 TTTTATACTA
*
51955436 AAT AATT AAT AAT AA- AAT AAT AAT GA- AAT AAT AAT AA- AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
51955479 AAA AAT AAT AAT TA- AAT AAT AAT AA- AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
51955516 TCTTATTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
2 10 0.16
3 51 0.80
4 3 0.05
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:51955456 original size:8 final size:8
Alignment explanation
Indices: 51955443--51955515 Score: 66
Period size: 8 Copynumber: 9.5 Consensus size: 8
51955433 CTAAATAATT
51955443 AATAATAA
1 AATAATAA
51955451 AATAAT--
1 AATAATAA
*
51955457 AATGAA-AT
1 AAT-AATAA
51955465 AATAATAA
1 AATAATAA
51955473 AATAATAAA
1 AATAAT-AA
51955482 AATAAT-A
1 AATAATAA
* *
51955489 ATTAA-AT
1 AATAATAA
51955496 AATAATAA
1 AATAATAA
51955504 AATAATAA
1 AATAATAA
51955512 AATA
1 AATA
51955516 TCTTATTAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
6 3 0.06
7 13 0.25
8 29 0.55
9 8 0.15
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.27
Consensus pattern (8 bp):
AATAATAA
Found at i:51955458 original size:11 final size:11
Alignment explanation
Indices: 51955442--51955511 Score: 108
Period size: 11 Copynumber: 6.5 Consensus size: 11
51955432 ACTAAATAAT
51955442 TAATAATAAAA
1 TAATAATAAAA
*
51955453 TAATAATGAAA
1 TAATAATAAAA
51955464 TAATAATAAAA
1 TAATAATAAAA
51955475 TAAT-A-AAAA
1 TAATAATAAAA
*
51955484 TAATAATTAAA
1 TAATAATAAAA
51955495 TAATAATAAAA
1 TAATAATAAAA
51955506 TAATAA
1 TAATAA
51955512 AATATCTTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
9 8 0.15
10 2 0.04
11 43 0.81
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:51955487 original size:31 final size:31
Alignment explanation
Indices: 51955443--51955513 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
51955433 CTAAATAATT
51955443 AATAAT-AAAATAATAATGAAATAATAATAA
1 AATAATAAAAATAATAATGAAATAATAATAA
*
51955473 AATAATAAAAATAATAATTAAATAATAATAA
1 AATAATAAAAATAATAATGAAATAATAATAA
51955504 AATAATAAAA
1 AATAATAAAA
51955514 TATCTTATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 6 0.15
31 33 0.85
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.27
Consensus pattern (31 bp):
AATAATAAAAATAATAATGAAATAATAATAA
Found at i:51955524 original size:31 final size:31
Alignment explanation
Indices: 51955443--51955531 Score: 119
Period size: 31 Copynumber: 2.9 Consensus size: 31
51955433 CTAAATAATT
*
51955443 AATAATAAAATA-ATAATGAAATAATAATAA
1 AATAATAAAATATATAATTAAATAATAATAA
51955473 AATAATAAAA-ATAATAATTAAATAATAATAA
1 AATAATAAAATAT-ATAATTAAATAATAATAA
* *
51955504 AATAATAAAATATCTTATTAAAATAATA
1 AATAATAAAATATATAATT-AAATAATA
51955532 TATATCTAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
29 1 0.02
30 10 0.19
31 31 0.60
32 10 0.19
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (31 bp):
AATAATAAAATATATAATTAAATAATAATAA
Found at i:51955528 original size:18 final size:20
Alignment explanation
Indices: 51955501--51955549 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
51955491 TAAATAATAA
* *
51955501 TAAAATAATAAAATATCTTAT
1 TAAAATAAT-ATATATCTAAT
51955522 TAAAATAATATATATCTAAT
1 TAAAATAATATATATCTAAT
51955542 T-AAATAAT
1 TAAAATAAT
51955550 CATAAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 7 0.27
20 10 0.38
21 9 0.35
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAATAATATATATCTAAT
Found at i:51956184 original size:41 final size:41
Alignment explanation
Indices: 51956139--51956218 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
51956129 ACACGGGTTA
*
51956139 GGACACGGGTGTGTCATGGCCATGTGAAGGACACGGGCCAG
1 GGACACGGGCGTGTCATGGCCATGTGAAGGACACGGGCCAG
51956180 GGACACGGGCGTGTCATGGCCATGTGAAGGACACGGGCC
1 GGACACGGGCGTGTCATGGCCATGTGAAGGACACGGGCC
51956219 GAAAACCCCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.21, C:0.24, G:0.41, T:0.14
Consensus pattern (41 bp):
GGACACGGGCGTGTCATGGCCATGTGAAGGACACGGGCCAG
Found at i:51957044 original size:31 final size:31
Alignment explanation
Indices: 51957006--51957069 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
51956996 CCTTTTCATA
51957006 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
51957037 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
51957068 TT
1 TT
51957070 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:51957327 original size:24 final size:24
Alignment explanation
Indices: 51957263--51957430 Score: 234
Period size: 25 Copynumber: 7.0 Consensus size: 24
51957253 ACTTTATCAT
*
51957263 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
51957288 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51957311 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
51957335 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* *
51957360 ATAACTGGGGAATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
51957385 ATAATTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51957408 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
51957431 GCACTTCCTC
Statistics
Matches: 132, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
23 37 0.28
24 45 0.34
25 50 0.38
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:51957544 original size:20 final size:20
Alignment explanation
Indices: 51957476--51957546 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
51957466 GCATTTATGA
*
51957476 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
51957496 ACATATCAGGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
51957516 ACATGTCATGTGCATATCAC
1 ACATATCATGTGCATATCAT
*
51957536 ATATATCATGT
1 ACATATCATGT
51957547 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:51968924 original size:24 final size:24
Alignment explanation
Indices: 51968892--51969158 Score: 387
Period size: 24 Copynumber: 11.1 Consensus size: 24
51968882 CTAGTTATAA
51968892 ATCAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
51968916 ATCAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
* *
51968940 ATAAAAAGGGCTTATGCCTCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
51968964 A-CTAAAAGGGCTTATGCCCCAGTT
1 ATC-AAAAGGGCTTATGCCCCAGTT
51968988 ATCAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
* * *
51969012 ATAAAAAGGGCTTATGCTCCAATT
1 ATCAAAAGGGCTTATGCCCCAGTT
*
51969036 ATAAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
51969060 A-CTAAAAGGGCTTATGCCCCAGTT
1 ATC-AAAAGGGCTTATGCCCCAGTT
51969084 ATCAAAAGGGCTTATGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
* *
51969108 ATTAAAAGGGCTTTTGCCCCAGTT
1 ATCAAAAGGGCTTATGCCCCAGTT
* *
51969132 ATTAAAAGAGG-TTAGGCCTCCAGTT
1 ATCAAAAG-GGCTTATGCC-CCAGTT
51969157 AT
1 AT
51969159 ATGATAAAGC
Statistics
Matches: 223, Mismatches: 14, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
24 211 0.95
25 12 0.05
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
ATCAAAAGGGCTTATGCCCCAGTT
Found at i:51972300 original size:47 final size:47
Alignment explanation
Indices: 51972247--51972704 Score: 801
Period size: 47 Copynumber: 9.7 Consensus size: 47
51972237 ATGTACACTT
*
51972247 TCACATATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
51972294 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
51972341 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
51972390 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
51972439 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
51972486 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
51972533 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
51972580 TCACATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
51972627 TCACATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* * *
51972674 TCTCATATATGCA-TGTTCACATCCATCACAT
1 TCACATATATACACT-TTCACATTCATCACAT
51972705 AGAATATAGA
Statistics
Matches: 399, Mismatches: 9, Indels: 6
0.96 0.02 0.01
Matches are distributed among these distances:
46 1 0.00
47 303 0.76
49 95 0.24
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:51979458 original size:24 final size:24
Alignment explanation
Indices: 51979402--51979542 Score: 80
Period size: 23 Copynumber: 5.9 Consensus size: 24
51979392 CCACAACTCG
* * *
51979402 TATGAGCTTACCGATATATCAGCTCG
1 TATGAGCTTACTG-T-TTTCAGCTCA
*
51979428 TAAGAGCTTACTGTTTTCAGCTCA
1 TATGAGCTTACTGTTTTCAGCTCA
* * *
51979452 T-TGGAGCTTACCG-ATTCAGCTCG
1 TAT-GAGCTTACTGTTTTCAGCTCA
*
51979475 TATGAGCTTACTG-TTT-AGCTTGA
1 TATGAGCTTACTGTTTTCAGC-TCA
**
51979498 TA-GAGCTTAC-CATTTCAGCTCA
1 TATGAGCTTACTGTTTTCAGCTCA
*
51979520 -ATAGAGCTTACTATTTATCAGCT
1 TAT-GAGCTTACTGTTT-TCAGCT
51979543 TAGGAGGAGC
Statistics
Matches: 90, Mismatches: 16, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
21 1 0.01
22 16 0.18
23 34 0.38
24 21 0.23
25 7 0.08
26 11 0.12
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (24 bp):
TATGAGCTTACTGTTTTCAGCTCA
Found at i:51979481 original size:23 final size:23
Alignment explanation
Indices: 51979398--51979518 Score: 88
Period size: 23 Copynumber: 5.1 Consensus size: 23
51979388 TTCACCACAA
51979398 CTCGTATGAGCTTACCGATATATCAG
1 CTCGTATGAGCTTACCG--AT-TCAG
* * *
51979424 CTCGTAAGAGCTTACTGTTTTCAG
1 CTCGTATGAGCTTACCG-ATTCAG
*
51979448 CTCAT-TGGAGCTTACCGATTCAG
1 CTCGTAT-GAGCTTACCGATTCAG
* *
51979471 CTCGTATGAGCTTACTG-TTTAG
1 CTCGTATGAGCTTACCGATTCAG
*
51979493 CTTG-ATAGAGCTTACC-ATTTCAG
1 CTCGTAT-GAGCTTACCGA-TTCAG
51979516 CTC
1 CTC
51979519 AATAGAGCTT
Statistics
Matches: 76, Mismatches: 14, Indels: 13
0.74 0.14 0.13
Matches are distributed among these distances:
21 2 0.03
22 15 0.20
23 24 0.32
24 18 0.24
25 2 0.03
26 15 0.20
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (23 bp):
CTCGTATGAGCTTACCGATTCAG
Found at i:51979757 original size:20 final size:20
Alignment explanation
Indices: 51979734--51979786 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
51979724 GAAATGAATG
51979734 AATTACTGTTGA-TA-TAGATA
1 AATTACTGTT-ATTACTA-ATA
*
51979754 AATTACTATTATTACTAATA
1 AATTACTGTTATTACTAATA
51979774 AATTACTGGTTAT
1 AATTACT-GTTAT
51979787 ACGGATGAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 1 0.04
20 21 0.75
21 6 0.21
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (20 bp):
AATTACTGTTATTACTAATA
Found at i:51979814 original size:20 final size:20
Alignment explanation
Indices: 51979777--51979815 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51979767 ACTAATAAAT
*
51979777 TACTGGTTATACGGATGAAC
1 TACTGGTTATACGAATGAAC
*
51979797 TACTGGTTATATGAATGAA
1 TACTGGTTATACGAATGAA
51979816 TTATATAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TACTGGTTATACGAATGAAC
Found at i:51981703 original size:21 final size:21
Alignment explanation
Indices: 51981679--51981722 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
51981669 ATTTTTGGGC
*
51981679 TAAATTGATT-AATTTGATGAT
1 TAAATAGATTAAATTTGAT-AT
*
51981700 TAAATAGGTTAAATTTGATAT
1 TAAATAGATTAAATTTGATAT
51981721 TA
1 TA
51981723 TAGATCAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (21 bp):
TAAATAGATTAAATTTGATAT
Found at i:51995422 original size:16 final size:16
Alignment explanation
Indices: 51995385--51995416 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51995375 AATTAAATAC
*
51995385 AATAAGAATAGAATTT
1 AATAATAATAGAATTT
51995401 AATAATAATAGAATTT
1 AATAATAATAGAATTT
51995417 TCTAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.34
Consensus pattern (16 bp):
AATAATAATAGAATTT
Found at i:51995462 original size:3 final size:3
Alignment explanation
Indices: 51995454--51995482 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51995444 TTAAAATTAA
51995454 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51995483 ACAGAGAGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:51999267 original size:15 final size:15
Alignment explanation
Indices: 51999247--51999280 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
51999237 AGCATATACA
*
51999247 CACAACCAATTCAAC
1 CACAACCAAGTCAAC
*
51999262 CACAACCAAGTCATC
1 CACAACCAAGTCAAC
51999277 CACA
1 CACA
51999281 CATCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.41, G:0.03, T:0.12
Consensus pattern (15 bp):
CACAACCAAGTCAAC
Found at i:52000046 original size:42 final size:42
Alignment explanation
Indices: 51999999--52000120 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
51999989 TACCATACCA
* * *
51999999 ATGCCATATCCTAGATATGGTCTTACATG-GGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* * * *
52000041 ATGCCAATAGCCCAGCTTTGGTTTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
52000084 ATGTCATATCCCAGATATGGTCTTACACGTAA-TCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCA
52000121 ACTAACCTTA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
42 30 0.46
43 34 0.52
44 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:52001492 original size:9 final size:9
Alignment explanation
Indices: 52001474--52001546 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 9
52001464 TTTATTTAAG
52001474 TTAA-GTGT
1 TTAATGTGT
52001482 TTAATGTGT
1 TTAATGTGT
52001491 TT--TGTGT
1 TTAATGTGT
52001498 TTAATAAGTGT
1 TTAAT--GTGT
52001509 TTAAATGTGT
1 TT-AATGTGT
*
52001519 TTAATATG-
1 TTAATGTGT
52001527 TT--TGT-T
1 TTAATGTGT
52001533 TTAATGTGT
1 TTAATGTGT
52001542 TTAAT
1 TTAAT
52001547 TGCAGGTGTC
Statistics
Matches: 53, Mismatches: 2, Indels: 19
0.72 0.03 0.26
Matches are distributed among these distances:
6 4 0.08
7 7 0.13
8 9 0.17
9 18 0.34
10 6 0.11
11 6 0.11
12 3 0.06
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (9 bp):
TTAATGTGT
Found at i:52001519 original size:21 final size:22
Alignment explanation
Indices: 52001493--52001546 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
52001483 TAATGTGTTT
52001493 TGTGTTTAATAAG-TGTTTAAA
1 TGTGTTTAATAAGTTGTTTAAA
* *
52001514 TGTGTTTAATATGTTTGTTTTAA
1 TGTGTTTAATAAG-TTGTTTAAA
52001537 TGTGTTTAAT
1 TGTGTTTAAT
52001547 TGCAGGTGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 12 0.41
23 17 0.59
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (22 bp):
TGTGTTTAATAAGTTGTTTAAA
Found at i:52003357 original size:7 final size:7
Alignment explanation
Indices: 52003328--52003381 Score: 56
Period size: 7 Copynumber: 7.6 Consensus size: 7
52003318 TATAAATTTT
52003328 ATTTATA
1 ATTTATA
*
52003335 ATTTAGCA
1 ATTTA-TA
*
52003343 TATATATA
1 -ATTTATA
52003351 ATTTAT-
1 ATTTATA
52003357 ATTTATA
1 ATTTATA
52003364 ATTTATA
1 ATTTATA
*
52003371 ATTTATT
1 ATTTATA
52003378 ATTT
1 ATTT
52003382 GATCTAAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
6 6 0.15
7 27 0.69
8 2 0.05
9 4 0.10
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (7 bp):
ATTTATA
Found at i:52004177 original size:75 final size:75
Alignment explanation
Indices: 52004054--52004203 Score: 194
Period size: 75 Copynumber: 2.0 Consensus size: 75
52004044 GTCACGTGAC
* ** * *
52004054 ACCACCATATTAATTATTAGTTCCCCATCACTATAAACTAACAATATTAGTGCGAAGATGTAACA
1 ACCACCATATTAATTATCAACTCCCCATCACTACAAACTAACAATATTAGTGCAAAGATGTAACA
* *
52004119 TAATTCAATT
66 GAATACAATT
* * *
52004129 ACCACCATATTGATTATCAACTCCCCATCAAC-ACAAATTAACAATATTAGTGCAAAGATGTGAC
1 ACCACCATATTAATTATCAACTCCCCATC-ACTACAAACTAACAATATTAGTGCAAAGATGTAAC
52004193 AGAATACAATT
65 AGAATACAATT
52004204 TCAAGTACCA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
75 62 0.97
76 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (75 bp):
ACCACCATATTAATTATCAACTCCCCATCACTACAAACTAACAATATTAGTGCAAAGATGTAACA
GAATACAATT
Found at i:52017321 original size:65 final size:65
Alignment explanation
Indices: 52017251--52017382 Score: 255
Period size: 65 Copynumber: 2.0 Consensus size: 65
52017241 TTAACAAACA
52017251 ATTATCTAACATATCAAAACCAATATATCAAAATCTAAATAATACATTAACGCATTGAAATTTAT
1 ATTATCTAACATATCAAAACCAATATATCAAAATCTAAATAATACATTAACGCATTGAAATTTAT
*
52017316 ATTATCTAACATATCAAAACGAATATATCAAAATCTAAATAATACATTAACGCATTGAAATTTAT
1 ATTATCTAACATATCAAAACCAATATATCAAAATCTAAATAATACATTAACGCATTGAAATTTAT
52017381 AT
1 AT
52017383 ATAAATAGGG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.49, C:0.14, G:0.04, T:0.33
Consensus pattern (65 bp):
ATTATCTAACATATCAAAACCAATATATCAAAATCTAAATAATACATTAACGCATTGAAATTTAT
Found at i:52017471 original size:9 final size:9
Alignment explanation
Indices: 52017457--52017487 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
52017447 TAAATGAATT
52017457 GAGTTATTC
1 GAGTTATTC
52017466 GAGTTATTC
1 GAGTTATTC
*
52017475 AAGTTATTC
1 GAGTTATTC
52017484 GAGT
1 GAGT
52017488 CAACTCGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.42
Consensus pattern (9 bp):
GAGTTATTC
Found at i:52022376 original size:40 final size:40
Alignment explanation
Indices: 52022321--52022401 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
52022311 TGAGTGGAAG
*
52022321 TATGATATCCGTAGAAGATCATGACGAACTAAAGGAGGGA
1 TATGATATCCGTAGAAGATCATGAAGAACTAAAGGAGGGA
52022361 TATGATATCCGTAGAAGATCATGAAGAACTAAAGGAGGGA
1 TATGATATCCGTAGAAGATCATGAAGAACTAAAGGAGGGA
52022401 T
1 T
52022402 TGTTTCATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.41, C:0.11, G:0.27, T:0.21
Consensus pattern (40 bp):
TATGATATCCGTAGAAGATCATGAAGAACTAAAGGAGGGA
Found at i:52029460 original size:8 final size:8
Alignment explanation
Indices: 52029447--52029481 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
52029437 TTTAAAAATT
52029447 ATATAAAA
1 ATATAAAA
52029455 ATATAAAA
1 ATATAAAA
*
52029463 TTATAAAA
1 ATATAAAA
*
52029471 TTATAAAA
1 ATATAAAA
52029479 ATA
1 ATA
52029482 ATAATATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
ATATAAAA
Found at i:52034505 original size:46 final size:46
Alignment explanation
Indices: 52034455--52034627 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
52034445 TGGTTGAGCA
*
52034455 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
52034501 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
52034546 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
52034594 CCCGAGCTCGTTGATTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
52034628 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.55
47 28 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:52034613 original size:93 final size:93
Alignment explanation
Indices: 52034452--52034622 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
52034442 GGATGGTTGA
*
52034452 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
52034517 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * * *
52034545 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
*
52034610 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
52034623 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:52037126 original size:16 final size:16
Alignment explanation
Indices: 52037102--52037140 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
52037092 GAGAAAAGAA
52037102 AGTAAGCTTATAGCTT
1 AGTAAGCTTATAGCTT
*
52037118 AGTAGGCTTATAGCTT
1 AGTAAGCTTATAGCTT
52037134 AGTAAGC
1 AGTAAGC
52037141 AAGTATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (16 bp):
AGTAAGCTTATAGCTT
Found at i:52039397 original size:9 final size:9
Alignment explanation
Indices: 52039379--52039408 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
52039369 ATCAAAATAA
52039379 TTTTAA-TT
1 TTTTAATTT
52039387 TTTTAATTT
1 TTTTAATTT
52039396 TTTTAATTT
1 TTTTAATTT
52039405 TTTT
1 TTTT
52039409 CAACCTCGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.29
9 15 0.71
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTAATTT
Found at i:52043790 original size:79 final size:80
Alignment explanation
Indices: 52043634--52043858 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 80
52043624 TTGAATGATG
* * * * * *
52043634 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG-GACTAAGAT-CCGAACGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGAG-CTAAG-TCCCGAAGGCA
52043696 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGATACTAAA
*
52043714 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGAGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGAGCTAAGTCCCGAAGGCA
*
52043775 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** * *
52043793 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGAGCTAAGTCCCGAAGGCATTT
52043858 G
66 G
52043859 AACGATGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
78 2 0.02
79 66 0.53
80 45 0.36
81 10 0.08
82 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGAGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:52043822 original size:40 final size:40
Alignment explanation
Indices: 52043634--52043858 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
52043624 TTGAATGATG
* * * *
52043634 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
52043674 TCCGGACTAAGAT-CCGAACGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
52043714 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
52043754 TCCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
52043793 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
52043834 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
52043859 AACGATGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:52043857 original size:119 final size:120
Alignment explanation
Indices: 52043634--52043858 Score: 273
Period size: 119 Copynumber: 1.9 Consensus size: 120
52043624 TTGAATGATG
* *
52043634 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAACGCATTT
1 TCCGAGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAACGCATTT
52043699 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * ** *
52043754 TCCGAGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAACGCAT
* *
52043816 TTGTGCGA-ATTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
52043859 AACGATGAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
118 3 0.03
119 68 0.76
120 19 0.21
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGAGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAACGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:52043881 original size:79 final size:79
Alignment explanation
Indices: 52043727--52043891 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
52043717 GGACTAAGAT
* ** *
52043727 CCGAAGGCATTTGTGCGAGATACTAATTCCGAGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
* *
52043792 ATCCGGGTTAAGTC
66 ATCCGAGTTAAATC
* *
52043806 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA-TGAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGAGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
52043868 CTATATCC-AGTTAAATT
62 CTAAATCCGAGTTAAATC
52043885 CCGAAGG
1 CCGAAGG
52043892 TACGTGATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 24 0.33
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGAGTTAAATC
Found at i:52046981 original size:12 final size:12
Alignment explanation
Indices: 52046964--52046988 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
52046954 ATGTAAGTGA
52046964 TCTTGATGATTT
1 TCTTGATGATTT
52046976 TCTTGATGATTT
1 TCTTGATGATTT
52046988 T
1 T
52046989 TATATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:52047785 original size:48 final size:46
Alignment explanation
Indices: 52047689--52048046 Score: 298
Period size: 48 Copynumber: 7.6 Consensus size: 46
52047679 AATTACTTAT
* * * *
52047689 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-CACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGA-GATGA
* *
52047735 GTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGTGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCGTAGAGATGA
* *
52047783 GTGCCAGTATAAGACCATGTCTGGGACATGGCATCGACGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCGTAGAGATGA
* *
52047831 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGA-GATGA
* * *
52047878 -TAGCCAGTGTAAGA-GTGTATGGGACATGCATCGGC-T-GAGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATG-A
* * * * * *
52047921 GTGCTAGTGTAAGACATGTCTGGGACATACATCAGCACGTATATACGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-G-GCGTAGAGATGA
* * * * * *
52047969 GAGCTAGTGTAAGACCATGTCTAGGACAAGACATCGGCCTTGATGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCGTAGA-GATGA
*
52048018 -TAGCCAGTGTAAGACCCTGTCTGGGACAT
1 GT-GCCAGTGTAAGA-CATGTCTGGGACAT
52048047 AACATCGGTA
Statistics
Matches: 255, Mismatches: 40, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
42 1 0.00
43 13 0.05
44 18 0.07
45 2 0.01
46 44 0.17
47 45 0.18
48 86 0.34
49 42 0.16
50 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATGA
Found at i:52048017 original size:140 final size:142
Alignment explanation
Indices: 52047691--52048055 Score: 397
Period size: 142 Copynumber: 2.6 Consensus size: 142
52047681 TTACTTATGT
* *
52047691 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-ACATTATGAGT-GCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGATGATGA-TAGCCAGTGTAAGA-CATG
* *
52047754 TTTGGGACATGGCATCGGTGTAGAGATGAGTGCCAGTATAAGACCATGTCTGGGACATGGCATCG
64 TATGGGACATGGCATCGGTGTAGAGATGAGTGCCAGTATAAGACCATGTCTGGGACATGACATCG
* *
52047819 ACGTAGAGATGAGT
129 ACGTAGAGACGAGA
* * * *
52047833 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATAGCCAGTGTAAGA-GTGTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGATGATGATAGCCAGTGTAAGACATGTA
* * *
52047897 TGGGACAT-GCATCGGCTG-AGAG-T-TGTGCTAGTGTAAGA-CATGTCTGGGACAT-ACATCAG
66 TGGGACATGGCATCGG-TGTAGAGATGAGTGCCAGTATAAGACCATGTCTGGGACATGACATC-G
* *
52047956 CACGTATATACGAGA
129 -ACGTAGAGACGAGA
* * * *
52047971 GCTAGTGTAAGACCATGTCTAGGACAAGACATCGGCCTTGATGATGATAGCCAGTGTAAGACCCT
1 GCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTAGATGATGATAGCCAGTGTAAGA-CAT
* **
52048036 GTCTGGGACATAACATCGGT
63 GTATGGGACATGGCATCGGT
52048056 AACTTATCCC
Statistics
Matches: 190, Mismatches: 23, Indels: 20
0.82 0.10 0.09
Matches are distributed among these distances:
136 4 0.02
137 15 0.08
138 33 0.17
139 14 0.07
140 41 0.22
141 13 0.07
142 47 0.25
143 23 0.12
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (142 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGATGATGATAGCCAGTGTAAGACATGTA
TGGGACATGGCATCGGTGTAGAGATGAGTGCCAGTATAAGACCATGTCTGGGACATGACATCGAC
GTAGAGACGAGA
Found at i:52049969 original size:22 final size:23
Alignment explanation
Indices: 52049943--52049987 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
52049933 AACAATGTAA
*
52049943 TTTGATGAATTACTAA-TATTTT
1 TTTGAAGAATTACTAATTATTTT
52049965 TTTGAAGAATTACTAATTATTTT
1 TTTGAAGAATTACTAATTATTTT
52049988 ACACATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.53
Consensus pattern (23 bp):
TTTGAAGAATTACTAATTATTTT
Found at i:52050202 original size:76 final size:76
Alignment explanation
Indices: 52050063--52050204 Score: 214
Period size: 76 Copynumber: 1.9 Consensus size: 76
52050053 TTTGTTACAC
* **
52050063 AACATATCTTAAAAATTTGTAAAATGTAGTTCTTTTACCATAATAATCCAAGAAAATTAATTAAA
1 AACATATCTTAAAAATTTGTAAAATGTAGTTCTTTTACCACAATAATCCAAGAAAAAAAATTAAA
52050128 TTTTATTACGT
66 TTTTATTACGT
* * *
52050139 AACATATTTTTAACATTTGTAAAATGTAGTTCTTTTACCACAATAATCCAA-AAAAAAAGATTAA
1 AACATATCTTAAAAATTTGTAAAATGTAGTTCTTTTACCACAATAATCCAAGAAAAAAA-ATTAA
52050203 AT
65 AT
52050205 ATCAAAATGG
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
75 5 0.08
76 54 0.92
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.37
Consensus pattern (76 bp):
AACATATCTTAAAAATTTGTAAAATGTAGTTCTTTTACCACAATAATCCAAGAAAAAAAATTAAA
TTTTATTACGT
Found at i:52053158 original size:84 final size:84
Alignment explanation
Indices: 52052999--52053157 Score: 230
Period size: 84 Copynumber: 1.9 Consensus size: 84
52052989 TAGGAGATCT
* * * * *
52052999 AAAGTTTAATTTTACTATATATTAATGTATAATTTCTTTATTTATAAGAGGATTAAATTGAAATT
1 AAAGTGTAATTTCACTACATATTAATGTATAATTTCTCTATTTATAAGAGGACTAAATTGAAATT
*
52053064 CTTTTATTTTTAAGGGGCC
66 CTTTCATTTTTAAGGGGCC
* *
52053083 AAAGTGTAATTTCACTACATATTAATTTATAGTTTCTCTATTTATAAGAGGACTAAATTGAAA-T
1 AAAGTGTAATTTCACTACATATTAATGTATAATTTCTCTATTTATAAGAGGACTAAATTGAAATT
*
52053147 GTTTCATTTTT
66 CTTTCATTTTT
52053158 TGGGGGGTAA
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
83 10 0.15
84 56 0.85
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.47
Consensus pattern (84 bp):
AAAGTGTAATTTCACTACATATTAATGTATAATTTCTCTATTTATAAGAGGACTAAATTGAAATT
CTTTCATTTTTAAGGGGCC
Found at i:52053285 original size:29 final size:30
Alignment explanation
Indices: 52053250--52053317 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
52053240 TGTTTACATT
*
52053250 TTGATCACTTAATT-T-CAAAAAGTTACAAA
1 TTGATCACTAAATTGTAC-AAAAGTTACAAA
*
52053279 TTGATCACTAAATTGTACAAAAGTTACAAG
1 TTGATCACTAAATTGTACAAAAGTTACAAA
52053309 TTGATCACT
1 TTGATCACT
52053318 GTCTTGTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
29 13 0.37
30 21 0.60
31 1 0.03
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (30 bp):
TTGATCACTAAATTGTACAAAAGTTACAAA
Found at i:52056012 original size:43 final size:43
Alignment explanation
Indices: 52055911--52056029 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 43
52055901 CACATATCAT
* *
52055911 ACAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCACATA
1 ACAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATA
* * *
52055954 ACAATACC-ACTGTCCCAGACAG-GGTCTTATACGTAATCATATA
1 ACAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATA
* * * * *
52055997 TCGATGCCAACGTCCCAAACATCGTCTTACACG
1 ACAATGCCAACGTCCCAGACGTGGTCTTACACG
52056030 AGAAATATAT
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
42 2 0.03
43 55 0.92
44 3 0.05
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (43 bp):
ACAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATA
Found at i:52065299 original size:93 final size:93
Alignment explanation
Indices: 52065187--52065358 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
52065177 CGCCCATAAG
* *
52065187 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
52065252 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
52065280 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
52065345 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
52065359 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:52065355 original size:46 final size:46
Alignment explanation
Indices: 52065180--52065355 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
52065170 TGTAACCCGC
* * *
52065180 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
52065226 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
52065276 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
52065319 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
52065356 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:52075980 original size:10 final size:10
Alignment explanation
Indices: 52075962--52076042 Score: 58
Period size: 9 Copynumber: 7.8 Consensus size: 10
52075952 ATTATTATTG
52075962 TTAAATTTTT
1 TTAAATTTTT
52075972 TT-AATTTTT
1 TTAAATTTTT
*
52075981 TTAACTTTATT
1 TTAAATTT-TT
* *
52075992 TATATATATTT
1 T-TAAATTTTT
52076003 TTAGAATCTTTT
1 TTA-AAT-TTTT
52076015 TTGAAATTTTT
1 TT-AAATTTTT
* *
52076026 ATAAA-TATT
1 TTAAATTTTT
52076035 TTAAATTT
1 TTAAATTT
52076043 AAAAAATTAT
Statistics
Matches: 54, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
9 16 0.30
10 12 0.22
11 13 0.24
12 12 0.22
13 1 0.02
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (10 bp):
TTAAATTTTT
Found at i:52078802 original size:55 final size:54
Alignment explanation
Indices: 52078554--52078807 Score: 244
Period size: 55 Copynumber: 4.8 Consensus size: 54
52078544 ACACGGGTAC
* *
52078554 CTTACC-ATTGCCATGACTTGTCATGGTCTTACATGGTATCC-T--TTT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCTTTAGAAA
* * * * *
52078603 CTTACC-ATTGTCATGTCTCGACATGGTCTTACATGATAT-CTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCTTTA-GAAA
* * * *
52078655 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGAG-A-CATTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATG-GTATC-CTTG-CTT-TAGAAA
* *
52078710 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCTTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCTTTAGAAA
*
52078763 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
52078808 AAACCCTAAT
Statistics
Matches: 166, Mismatches: 23, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
48 1 0.01
49 35 0.21
51 2 0.01
52 31 0.19
53 10 0.06
54 14 0.08
55 72 0.43
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCTTTAGAAA
Found at i:52080869 original size:27 final size:27
Alignment explanation
Indices: 52080839--52081070 Score: 263
Period size: 27 Copynumber: 8.6 Consensus size: 27
52080829 CCAAAGTACT
*
52080839 CTCGATTTACAAAATTATCGTTTTACC
1 CTCGATTTACAAAATTACCGTTTTACC
*
52080866 CTCGATTTA-AAGAATTACCATTTTACC
1 CTCGATTTACAA-AATTACCGTTTTACC
* * * *
52080893 TTCAATTTATAAAATTACCATTTTACC
1 CTCGATTTACAAAATTACCGTTTTACC
* * * *
52080920 CTCGATTTATAGAATTACCGTCTCACC
1 CTCGATTTACAAAATTACCGTTTTACC
**
52080947 CTCGATTTACAAAATTATTGTTTTA-C
1 CTCGATTTACAAAATTACCGTTTTACC
* * *
52080973 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTACAAAATTACCGTTTTACC
*
52081000 CTCAATTTA-AAGAATTACCGTTTTACC
1 CTCGATTTACAA-AATTACCGTTTTACC
*
52081027 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAAAATTACCGTTTTACC
*
52081054 TTCGATTTACAAAATTA
1 CTCGATTTACAAAATTA
52081071 TTAAAATACC
Statistics
Matches: 172, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
26 24 0.14
27 145 0.84
28 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
CTCGATTTACAAAATTACCGTTTTACC
Found at i:52080882 original size:54 final size:53
Alignment explanation
Indices: 52080839--52081071 Score: 290
Period size: 54 Copynumber: 4.3 Consensus size: 53
52080829 CCAAAGTACT
*
52080839 CTCGATTTACAAAATTATCGTTTTACCCTCGATTTAAAGAATTACCATTTTAC
1 CTCGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
* * * * * * *
52080892 CTTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTCTCACC
1 C-TCGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTA-C
*
52080947 CTCGATTTACAAAATTATTGTTTTA-CCTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTA-C
* * * *
52081000 CTCAATTTA-AAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTAC
1 CTCGATTTACAA-AATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
52081053 CTTCGATTTACAAAATTAT
1 C-TCGATTTACAAAATTAT
52081072 TAAAATACCC
Statistics
Matches: 151, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.01
53 47 0.31
54 98 0.65
55 4 0.03
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.40
Consensus pattern (53 bp):
CTCGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
Found at i:52081016 original size:107 final size:108
Alignment explanation
Indices: 52080839--52081072 Score: 373
Period size: 107 Copynumber: 2.2 Consensus size: 108
52080829 CCAAAGTACT
* *
52080839 CTCGATTTACAAAATTATCGTTTTACCCTCGATTTAAAGAATTACCATTTTACCTTCAATTTATA
1 CTCGATTTACAAAATTATTGTTTTACCCTCGATTTAAAGAATTACCATTTTACCCTCAATTTATA
*
52080904 AAATTACCATTTTACCCTCGATTTATAGAATTACCGTCTCACC
66 AAATTACCATTTTACCCTCGATTTACAGAATTACCGTCTCACC
*
52080947 CTCGATTTACAAAATTATTGTTTTA-CCTCGATTTATAGAATTACCATTTTACCCTCAATTTA-A
1 CTCGATTTACAAAATTATTGTTTTACCCTCGATTTAAAGAATTACCATTTTACCCTCAATTTATA
* * *
52081010 AGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACC
66 A-AATTACCATTTTACCCTCGATTTACAGAATTACCGTCTCACC
*
52081054 TTCGATTTACAAAATTATT
1 CTCGATTTACAAAATTATT
52081073 AAAATACCCT
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
106 2 0.02
107 91 0.78
108 24 0.21
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.40
Consensus pattern (108 bp):
CTCGATTTACAAAATTATTGTTTTACCCTCGATTTAAAGAATTACCATTTTACCCTCAATTTATA
AAATTACCATTTTACCCTCGATTTACAGAATTACCGTCTCACC
Found at i:52081080 original size:27 final size:27
Alignment explanation
Indices: 52081023--52081161 Score: 97
Period size: 27 Copynumber: 5.1 Consensus size: 27
52081013 ATTACCGTTT
* * ****
52081023 TACCCTCGATTTACAGAATTACCGTTT
1 TACCTTCGATTTACAAAATTACCAAAA
**
52081050 TACCTTCGATTTACAAAATTATTAAAA
1 TACCTTCGATTTACAAAATTACCAAAA
*
52081077 TACCCTT-GGTTTACAAAATTACCAAAA
1 TA-CCTTCGATTTACAAAATTACCAAAA
* *
52081104 TACCCTCGA-TTAGTAAAATTACCAAAA
1 TACCTTCGATTTA-CAAAATTACCAAAA
* *
52081131 TACCCTTGGCTTGT--AAAATTACCAAAA
1 TA-CCTTCGATT-TACAAAATTACCAAAA
52081158 TACC
1 TACC
52081162 CCTGGCTTGT
Statistics
Matches: 89, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
26 8 0.09
27 71 0.80
28 8 0.09
29 1 0.01
30 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCTTCGATTTACAAAATTACCAAAA
Found at i:52081149 original size:81 final size:81
Alignment explanation
Indices: 52081064--52081214 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 81
52081054 TTCGATTTAC
** * *
52081064 AAAATTATTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
1 AAAATTACCAAAATACCCCTGGCTTACAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
52081129 AATACCCTTGGCTTGT
66 AATACCCTTGGCTTGT
** * * * * *
52081145 AAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCTTGATTTGTGAAATTATCGA
1 AAAATTACCAAAATACCCCTGGCTTACAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
52081210 AATAC
66 AATAC
52081215 TCTCAATTTG
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGGCTTACAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
AATACCCTTGGCTTGT
Found at i:52081198 original size:27 final size:27
Alignment explanation
Indices: 52081064--52081245 Score: 177
Period size: 27 Copynumber: 6.8 Consensus size: 27
52081054 TTCGATTTAC
** * **
52081064 AAAATTATTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGATTTGT
* *
52081091 AAAATTACCAAAATACCCTCGATTAGT
1 AAAATTACCAAAATACCCTTGATTTGT
**
52081118 AAAATTACCAAAATACCCTTGGCTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* **
52081145 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
52081172 AAAATTACCAAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * * * **
52081199 GAAATTATCGAAATACTCTCAATTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* *
52081226 AAAA-TATCGAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
52081246 TAGGGTAGAA
Statistics
Matches: 130, Mismatches: 25, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 13 0.10
27 117 0.90
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGATTTGT
Found at i:52081204 original size:54 final size:55
Alignment explanation
Indices: 52081064--52081271 Score: 192
Period size: 54 Copynumber: 3.9 Consensus size: 55
52081054 TTCGATTTAC
** **
52081064 AAAATTATTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATTAGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTCGATTAGT
* * *
52081118 AAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAATACCCCTGGCTT-GT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTCGATTAGT
* * * * * * *
52081172 AAAATTACCAAAATACCCTTGATTTGTGAAATTATCGAAATA-CTCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTCGATTAGT
* * ** * *
52081226 AAAA-TATCGAAATACCCTT-GTAGGGTAGAATTACCGAAATACCCCT
1 AAAATTACCAAAATACCCTTGGT-TTGTAAAATTACCAAAATACCCCT
52081272 GTAGGGTAGA
Statistics
Matches: 125, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
52 1 0.01
53 32 0.26
54 85 0.68
55 7 0.06
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (55 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTCGATTAGT
Found at i:52081274 original size:27 final size:27
Alignment explanation
Indices: 52081233--52081407 Score: 278
Period size: 27 Copynumber: 6.5 Consensus size: 27
52081223 TGTAAAATAT
52081233 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAATTAC
*
52081260 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAATTAC
* *
52081287 TGAAATAACCTTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAATTAC
*
52081314 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAATTAC
* * *
52081341 TGAAATAACCTTGTAGGGTAGAATTAT
1 CGAAATACCCTTGTAGGGTAGAATTAC
52081368 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAATTAC
*
52081395 CGAGATACCCTTG
1 CGAAATACCCTTG
52081408 GGTAAAATTA
Statistics
Matches: 133, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAATTAC
Found at i:52081658 original size:25 final size:25
Alignment explanation
Indices: 52081624--52081693 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
52081614 AGGAAGTGCT
*
52081624 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* * *
52081649 AAAAGGGCTTTACCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
52081674 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
52081694 ATTAACAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:52081796 original size:38 final size:38
Alignment explanation
Indices: 52081745--52081836 Score: 175
Period size: 38 Copynumber: 2.4 Consensus size: 38
52081735 ATGTTGCCAG
52081745 TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
1 TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
52081783 TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
1 TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
*
52081821 TGGAGAGCTTGGTTGG
1 TGGAGAGTTTGGTTGG
52081837 TACAGGTGGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.15, C:0.12, G:0.39, T:0.34
Consensus pattern (38 bp):
TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
Found at i:52081987 original size:31 final size:31
Alignment explanation
Indices: 52081952--52082035 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
52081942 CGTTTATAGT
52081952 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
52081983 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
52082014 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
52082036 TCAAGACTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:52084317 original size:27 final size:27
Alignment explanation
Indices: 52084298--52084481 Score: 251
Period size: 27 Copynumber: 6.8 Consensus size: 27
52084288 ATTACCAAAG
*
52084298 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
52084325 TACCATCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
52084352 TACTCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
52084379 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
52084406 CACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
52084433 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
52084460 TACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
52084482 TGAAATACCA
Statistics
Matches: 137, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:52084500 original size:81 final size:80
Alignment explanation
Indices: 52084298--52084510 Score: 264
Period size: 81 Copynumber: 2.6 Consensus size: 80
52084288 ATTACCAAAG
* * *
52084298 TACCCTCGATTTACAGAATTACCGTTTTACCATCGATTTACAGAATTACCATTTTACTCTCGATT
1 TACCCTCGATTTACAGAATTACCG-TTTACCATCGATTTACAAAATTACCATTTTACCCTCAATT
*
52084363 TATAGAATTACCATTT
65 TACAGAATTACCATTT
* * *
52084379 TACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTATCATTTTACCCTCAATT
1 TACCCTCGATTTACAGAATTACCGTTT-ACCATCGATTTACAAAATTACCATTTTACCCTCAATT
*
52084444 TACAGAATTACCGTTT
65 TACAGAATTACCATTT
* * * ** * *
52084460 TACCCTTGATTTACAAAATTACTGAAATACCATTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAGAATTACCG-TTTACCATCGATTTACAAAATTACCA
52084511 AAATACCCTC
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 3 0.03
81 108 0.96
82 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.38
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACCGTTTACCATCGATTTACAAAATTACCATTTTACCCTCAATTT
ACAGAATTACCATTT
Found at i:52084556 original size:27 final size:26
Alignment explanation
Indices: 52084460--52084586 Score: 87
Period size: 27 Copynumber: 4.8 Consensus size: 26
52084450 ATTACCGTTT
** *
52084460 TACCCTTGATTTACAAAATTACTGAAA
1 TACCC-TGATTTGTAAAATTACTAAAA
* * ** *
52084487 TACCATTGGTTTACAAAATTACCAAAA
1 TACC-CTGATTTGTAAAATTACTAAAA
**
52084514 TACCCTCGATCAGTAAAATTACTAAAA
1 TACCCT-GATTTGTAAAATTACTAAAA
*
52084541 TACTCCTGGTTTGT-AAATTAC-AAAA
1 TAC-CCTGATTTGTAAAATTACTAAAA
*
52084566 TACCCCTGATTTGTGAAATTA
1 TA-CCCTGATTTGTAAAATTA
52084587 TCGAAATACT
Statistics
Matches: 80, Mismatches: 15, Indels: 11
0.75 0.14 0.10
Matches are distributed among these distances:
25 15 0.19
26 15 0.19
27 47 0.59
28 3 0.04
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (26 bp):
TACCCTGATTTGTAAAATTACTAAAA
Found at i:52084584 original size:26 final size:26
Alignment explanation
Indices: 52084502--52084652 Score: 85
Period size: 27 Copynumber: 5.7 Consensus size: 26
52084492 TTGGTTTACA
**
52084502 AAATTACCAAAATA-CCCTCGATCAGT
1 AAATTACCAAAATACCCCT-GATTTGT
* * *
52084528 AAAATTACTAAAATACTCCTGGTTTGT
1 -AAATTACCAAAATACCCCTGATTTGT
52084555 AAATTA-CAAAATACCCCTGATTTGT
1 AAATTACCAAAATACCCCTGATTTGT
* * * *
52084580 GAAATTATCGAAATA-CTCTCGATTTTT
1 -AAATTACCAAAATACCCCT-GATTTGT
* * * **
52084607 AAAATATCGAAATACCCCTG-TAGGGT
1 AAATTACCAAAATACCCCTGAT-TTGT
*
52084633 AGAATTACCGAAATACCCCT
1 A-AATTACCAAAATACCCCT
52084653 ATAGGGTAGA
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
25 17 0.17
26 31 0.31
27 48 0.48
28 3 0.03
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (26 bp):
AAATTACCAAAATACCCCTGATTTGT
Found at i:52084652 original size:27 final size:27
Alignment explanation
Indices: 52084614--52084773 Score: 227
Period size: 27 Copynumber: 6.0 Consensus size: 27
52084604 TTTAAAATAT
52084614 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
52084641 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
52084668 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
52084695 CGAAATACCGTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
52084722 CGAAATACCCCTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
52084749 CGAGATA-CCCT-T-GGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
52084773 C
1 C
52084774 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
24 13 0.11
25 1 0.01
26 4 0.03
27 103 0.85
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:52085054 original size:25 final size:25
Alignment explanation
Indices: 52084978--52085047 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
52084968 AGGAAGTGCT
* * *
52084978 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
52085003 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
52085028 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
52085048 ATTCAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:52085060 original size:24 final size:24
Alignment explanation
Indices: 52084979--52085060 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
52084969 GGAAGTGCTA
* *
52084979 AAAG-GGCTTTGCCCTAGTTTACC
1 AAAGAGGCTTTGCCCCAGTTTATC
52085002 GAAA-AGGGCTTTGCCCCAGTTTATC
1 -AAAGA-GGCTTTGCCCCAGTTTATC
*
52085027 AAAAAGGGCTTTGCCCCAG-TTATTC
1 AAAGA-GGCTTTGCCCCAGTTTA-TC
52085052 AAAGAGGCT
1 AAAGAGGCT
52085061 AGGCCTCTAG
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
24 13 0.25
25 38 0.75
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAGAGGCTTTGCCCCAGTTTATC
Found at i:52085303 original size:31 final size:31
Alignment explanation
Indices: 52085268--52085382 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
52085258 CATTTACAGT
52085268 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
52085299 AAAGGTTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
52085330 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
52085361 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
52085383 TCAAGACTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 5 0.06
31 73 0.94
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:52087373 original size:32 final size:32
Alignment explanation
Indices: 52087337--52087404 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
52087327 GAATAAGGGC
52087337 ACATTGGTTAGGCATTTAGGTTGAATCTTTTA
1 ACATTGGTTAGGCATTTAGGTTGAATCTTTTA
52087369 ACATTGGTTAGGCATTTAGGTTGAATCTTTTA
1 ACATTGGTTAGGCATTTAGGTTGAATCTTTTA
52087401 ACAT
1 ACAT
52087405 GTTTTGGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (32 bp):
ACATTGGTTAGGCATTTAGGTTGAATCTTTTA
Found at i:52090766 original size:21 final size:21
Alignment explanation
Indices: 52090740--52090784 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
52090730 ATTTGTCGAG
*
52090740 GTAAGTTCTTGTAACTAAATT
1 GTAAGTTCGTGTAACTAAATT
52090761 GTAAGTTCGTGTAACTAAATT
1 GTAAGTTCGTGTAACTAAATT
52090782 GTA
1 GTA
52090785 TATGTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (21 bp):
GTAAGTTCGTGTAACTAAATT
Found at i:52092599 original size:15 final size:17
Alignment explanation
Indices: 52092581--52092612 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
52092571 AGCATAATTT
52092581 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
52092596 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
52092613 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:52099228 original size:26 final size:26
Alignment explanation
Indices: 52099144--52099279 Score: 199
Period size: 26 Copynumber: 5.3 Consensus size: 26
52099134 CTGGAGGCCT
52099144 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
52099168 AGCCCTTTTCGGTAAACTAGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
52099193 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
52099219 AGCCCTTTTCAGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
52099245 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
52099271 AGCCCTTTT
1 AGCCCTTTT
52099280 GCACTTCCTC
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 31 0.31
26 60 0.59
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:52099360 original size:11 final size:11
Alignment explanation
Indices: 52099346--52099384 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
52099336 GCACTTCATA
52099346 CATATCATGTG
1 CATATCATGTG
*
52099357 CATATCA--TA
1 CATATCATGTG
52099366 CATATCATGTG
1 CATATCATGTG
52099377 CATATCAT
1 CATATCAT
52099385 ATCAATCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (11 bp):
CATATCATGTG
Found at i:52099364 original size:20 final size:20
Alignment explanation
Indices: 52099341--52099403 Score: 96
Period size: 20 Copynumber: 3.2 Consensus size: 20
52099331 CATAAGCACT
52099341 TCATACATATCATGTGCATA
1 TCATACATATCATGTGCATA
52099361 TCATACATATCATGTGCATA
1 TCATACATATCATGTGCATA
52099381 TCATATCA-ATCATGT--ATA
1 TCATA-CATATCATGTGCATA
52099399 TCATA
1 TCATA
52099404 TCCCGCGCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.19
20 32 0.76
21 2 0.05
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.37
Consensus pattern (20 bp):
TCATACATATCATGTGCATA
Found at i:52099401 original size:9 final size:10
Alignment explanation
Indices: 52099346--52099402 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
52099336 GCACTTCATA
52099346 CATATCATGT
1 CATATCATGT
*
52099356 GCATATCAT-A
1 -CATATCATGT
52099366 CATATCATGT
1 CATATCATGT
*
52099376 GCATATCATAT
1 -CATATCATGT
52099387 CA-ATCATGT
1 CATATCATGT
52099396 -ATATCAT
1 CATATCAT
52099403 ATCCCGCGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:52108908 original size:27 final size:27
Alignment explanation
Indices: 52108870--52109002 Score: 180
Period size: 27 Copynumber: 5.0 Consensus size: 27
52108860 GTTAAGACCT
52108870 CAGTTTGTAAAATTACTGAAATACCCC
1 CAGTTTGTAAAATTACTGAAATACCCC
52108897 CAGTTTGTAAAATTA-TCGAAATACCCC
1 CAGTTTGTAAAATTACT-GAAATACCCC
* *
52108924 CAGTTTGTAAAATTACTAAAATATCCC
1 CAGTTTGTAAAATTACTGAAATACCCC
**
52108951 CAGTTTGTAAAATTACCAAAATA-CCC
1 CAGTTTGTAAAATTACTGAAATACCCC
* **
52108977 TAGTTTGTAAAATTTTTGAAATACCC
1 CAGTTTGTAAAATTACTGAAATACCC
52109003 TTGATTTGTG
Statistics
Matches: 95, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
26 22 0.23
27 72 0.76
28 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
CAGTTTGTAAAATTACTGAAATACCCC
Found at i:52108952 original size:54 final size:53
Alignment explanation
Indices: 52108870--52109029 Score: 196
Period size: 54 Copynumber: 3.0 Consensus size: 53
52108860 GTTAAGACCT
* * *
52108870 CAGTTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTATCGAAATACCCC
1 CAGTTTGTAAAATTACTAAAATACCCCCAGTTTGTAAAATTACCAAAATA-CCC
*
52108924 CAGTTTGTAAAATTACTAAAATATCCCCAGTTTGTAAAATTACCAAAATACCC
1 CAGTTTGTAAAATTACTAAAATACCCCCAGTTTGTAAAATTACCAAAATACCC
* ** * ** *
52108977 TAGTTTGTAAAATTTTTGAAATA-CCCTTGATTTGTGAAATTACCAAAATACCC
1 CAGTTTGTAAAATTACTAAAATACCCCCAG-TTTGTAAAATTACCAAAATACCC
52109030 ATATAGTGTA
Statistics
Matches: 94, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
52 4 0.04
53 44 0.47
54 46 0.49
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (53 bp):
CAGTTTGTAAAATTACTAAAATACCCCCAGTTTGTAAAATTACCAAAATACCC
Found at i:52109025 original size:27 final size:26
Alignment explanation
Indices: 52108871--52109029 Score: 156
Period size: 27 Copynumber: 6.0 Consensus size: 26
52108861 TTAAGACCTC
** *
52108871 AGTTTGTAAAATTACTGAAATACCCCC
1 AGTTTGTAAAATTACCAAAATA-CCCT
* * *
52108898 AGTTTGTAAAATTATCGAAATACCCCC
1 AGTTTGTAAAATTACCAAAATA-CCCT
* *
52108925 AGTTTGTAAAATTACTAAAATATCCCC
1 AGTTTGTAAAATTACCAAAATA-CCCT
52108952 AGTTTGTAAAATTACCAAAATACCCT
1 AGTTTGTAAAATTACCAAAATACCCT
****
52108978 AGTTTGTAAAATTTTTGAAATACCCT
1 AGTTTGTAAAATTACCAAAATACCCT
* *
52109004 TGATTTGTGAAATTACCAAAATACCC
1 AG-TTTGTAAAATTACCAAAATACCC
52109030 ATATAGTGTA
Statistics
Matches: 113, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
26 26 0.23
27 87 0.77
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (26 bp):
AGTTTGTAAAATTACCAAAATACCCT
Found at i:52109093 original size:27 final size:26
Alignment explanation
Indices: 52109013--52109098 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
52109003 TTGATTTGTG
* * *
52109013 AAATTACCAAAATACCCATATAGTGTA
1 AAATGACCATAATACCCCTATAG-GTA
* * *
52109040 AAATGACCGTAATGCCCCTGTAAGGTA
1 AAATGACCATAATACCCCTAT-AGGTA
52109067 AAATGACCATAATACCCCTATATGGTA
1 AAATGACCATAATACCCCTATA-GGTA
*
52109094 GAATG
1 AAATG
52109099 GCGATTATGC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
26 1 0.02
27 44 0.94
28 2 0.04
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (26 bp):
AAATGACCATAATACCCCTATAGGTA
Found at i:52111366 original size:40 final size:40
Alignment explanation
Indices: 52111318--52111509 Score: 269
Period size: 40 Copynumber: 4.8 Consensus size: 40
52111308 ATAACAACTC
52111318 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
52111358 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
52111398 GCACAAATGCCTTCGGGTCTTAGTCCAGATATAG-CAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* *
52111438 GCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
52111478 GCACAAAAGCCTTCGGGACTCAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
52111510 CATTCGAATA
Statistics
Matches: 133, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 131 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:52116354 original size:28 final size:28
Alignment explanation
Indices: 52116321--52116423 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
52116311 ATTGCATGAC
* *
52116321 TATGAATGTGATTGGGCCTGACGGGTCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
52116349 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * *
52116377 TACGAATGTGGTTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
52116405 TATAAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
52116424 AAAGGGGCCA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:52117572 original size:48 final size:48
Alignment explanation
Indices: 52117514--52118567 Score: 1678
Period size: 48 Copynumber: 22.0 Consensus size: 48
52117504 ATATACACAC
* *
52117514 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52117562 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
52117610 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52117658 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52117706 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
52117754 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
52117802 ATCTCATATATATACATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTC------ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
52117856 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
52117904 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52117952 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52118000 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52118048 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
52118096 ATCTCATACATATTTCACATTAGCTATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
52118144 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52118192 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
52118240 ATATCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52118288 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52118336 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52118384 ATCTCATACATATTTCACATTAGCCATTAGGCTTTACCAC--AT--AT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
52118428 A---C--A-ATATTTCACATTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
52118470 ATCTCATATATATATCACATTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
52118518 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
52118566 AT
1 AT
52118568 TTATCTTGCA
Statistics
Matches: 952, Mismatches: 38, Indels: 32
0.93 0.04 0.03
Matches are distributed among these distances:
38 30 0.03
39 1 0.00
40 2 0.00
41 1 0.00
42 3 0.00
44 3 0.00
45 1 0.00
46 2 0.00
47 1 0.00
48 860 0.90
54 48 0.05
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:52118439 original size:38 final size:38
Alignment explanation
Indices: 52118388--52118468 Score: 137
Period size: 38 Copynumber: 2.2 Consensus size: 38
52118378 ATACATATCT
52118388 CATAC-ATATTTCACATTAGCCATTAGGCTTTACCACA
1 CATACAATATTTCACATTAGCCATTAGGCTTTACCACA
* *
52118425 TATACAATATTTCACATTAGCCATTCGGCTTTACCACA
1 CATACAATATTTCACATTAGCCATTAGGCTTTACCACA
52118463 CATACA
1 CATACA
52118469 TATCTCATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 4 0.10
38 36 0.90
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.32
Consensus pattern (38 bp):
CATACAATATTTCACATTAGCCATTAGGCTTTACCACA
Found at i:52124803 original size:40 final size:40
Alignment explanation
Indices: 52124705--52124967 Score: 289
Period size: 40 Copynumber: 6.6 Consensus size: 40
52124695 TCCTCGTTCA
* * * *
52124705 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * *
52124744 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* *
52124784 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
*
52124824 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACATG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * *
52124864 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * * * *
52124904 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCA-CACG
* *
52124944 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
52124968 CAGCATTCAA
Statistics
Matches: 193, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
39 37 0.19
40 150 0.78
41 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
Found at i:52124902 original size:120 final size:119
Alignment explanation
Indices: 52124705--52124967 Score: 323
Period size: 120 Copynumber: 2.2 Consensus size: 119
52124695 TCCTCGTTCA
* * *
52124705 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
* ** * *
52124770 TAACAACTCGCACGACTGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* * *
52124823 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACATGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACA-CAATGCCTTCGGGACATAACCCGGA
** * * * *
52124888 TTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
*
52124944 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
52124968 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 37 0.30
120 80 0.66
121 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:52128179 original size:27 final size:27
Alignment explanation
Indices: 52128064--52128168 Score: 133
Period size: 27 Copynumber: 4.0 Consensus size: 27
52128054 AACATCCCAG
*
52128064 TTTGTAAAATTACCAAAATACCC--AA
1 TTTGTAAAATTACCAAAATACCCTTGA
* *
52128089 TTTGTAAAATTACCGAAATACCCCTGA
1 TTTGTAAAATTACCAAAATACCCTTGA
* *
52128116 TTTGTAAAATTATCAAAACACCCTTGA
1 TTTGTAAAATTACCAAAATACCCTTGA
* *
52128143 TTTGTGAAATTACTAAAATACCCTTG
1 TTTGTAAAATTACCAAAATACCCTTG
52128169 TAGTGTAAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
25 22 0.32
27 46 0.68
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCTTGA
Found at i:52146576 original size:18 final size:18
Alignment explanation
Indices: 52146553--52146615 Score: 117
Period size: 18 Copynumber: 3.5 Consensus size: 18
52146543 ATGACTGAAA
52146553 GTGAATATCTGGATGTGT
1 GTGAATATCTGGATGTGT
*
52146571 GTGAATATCTGAATGTGT
1 GTGAATATCTGGATGTGT
52146589 GTGAATATCTGGATGTGT
1 GTGAATATCTGGATGTGT
52146607 GTGAATATC
1 GTGAATATC
52146616 CAACAATGCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.25, C:0.06, G:0.30, T:0.38
Consensus pattern (18 bp):
GTGAATATCTGGATGTGT
Done.