Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 18 of 325
Found at i:7151688 original size:13 final size:13
Alignment explanation
Indices: 7151669--7151701 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7151659 TTTTGCATTT
7151669 TATGTGTGAGAAAA
1 TATGTGTGA-AAAA
7151683 -ATGTGTGAAAAA
1 TATGTGTGAAAAA
7151695 TATGTGT
1 TATGTGT
7151702 TTACTTAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.33
Consensus pattern (13 bp):
TATGTGTGAAAAA
Found at i:7158965 original size:15 final size:15
Alignment explanation
Indices: 7158940--7158977 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7158930 AGACCATGGA
*
7158940 AGAAGAGGTGGA-GT
1 AGAAGAAGTGGAGGT
7158954 ATGAAGAAGTGGAGGT
1 A-GAAGAAGTGGAGGT
7158970 AGAAGAAG
1 AGAAGAAG
7158978 AAGGAGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 17 0.81
16 3 0.14
ACGTcount: A:0.42, C:0.00, G:0.45, T:0.13
Consensus pattern (15 bp):
AGAAGAAGTGGAGGT
Found at i:7158976 original size:3 final size:3
Alignment explanation
Indices: 7158970--7159053 Score: 98
Period size: 3 Copynumber: 28.0 Consensus size: 3
7158960 AAGTGGAGGT
* * * * *
7158970 AGA AGA AGA AGG AGA GGA AGA A-A TAGA AGA GGA AGT GGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA AGA AGA AGA AGA AGA
*
7159015 AGA AGA AGA AGA AGA AGA AGA AGA GGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
7159054 CCTGGATGTT
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
2 1 0.01
3 65 0.97
4 1 0.01
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:7163413 original size:21 final size:21
Alignment explanation
Indices: 7163387--7163435 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
7163377 TTCTTCATTA
7163387 TCTTCTTCTTCG-TCTTGTTCT
1 TCTTCTTCTTCGAT-TTGTTCT
*
7163408 TGTTCTTCTTCGATTTGTTCT
1 TCTTCTTCTTCGATTTGTTCT
7163429 TCTTCTT
1 TCTTCTT
7163436 TATGATTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.02, C:0.24, G:0.10, T:0.63
Consensus pattern (21 bp):
TCTTCTTCTTCGATTTGTTCT
Found at i:7189922 original size:63 final size:63
Alignment explanation
Indices: 7189813--7189939 Score: 184
Period size: 63 Copynumber: 2.0 Consensus size: 63
7189803 AAGTATGGTG
* *
7189813 CTTTAGTGCCATATGGTATATCTATCTCAACCATTATAAACATGCCATACTTGGCACAATAGA
1 CTTTAGTGCCATATGGTATAGCTATCTCAACCATTATAAACATGCCATACTTGGCACAAAAGA
* * * *
7189876 CTTTGGTGCCATATGGTATAGCTATCTTC-ACCATTATCAGCCTGCCATACTTGGCACAAAAGA
1 CTTTAGTGCCATATGGTATAGCTATC-TCAACCATTATAAACATGCCATACTTGGCACAAAAGA
7189939 C
1 C
7189940 AGATACACAT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
63 55 0.96
64 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (63 bp):
CTTTAGTGCCATATGGTATAGCTATCTCAACCATTATAAACATGCCATACTTGGCACAAAAGA
Found at i:7192594 original size:22 final size:22
Alignment explanation
Indices: 7192569--7192611 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7192559 TATCCAAACA
7192569 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
7192591 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
7192612 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:7192615 original size:11 final size:11
Alignment explanation
Indices: 7192576--7192616 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
7192566 ACAATAACAA
7192576 CAAAATAGTAG
1 CAAAATAGTAG
* *
7192587 CAACATAATAG
1 CAAAATAGTAG
*
7192598 TAAAATAGTAG
1 CAAAATAGTAG
7192609 CAAAATAG
1 CAAAATAG
7192617 AGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:7192624 original size:22 final size:22
Alignment explanation
Indices: 7192577--7192626 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
7192567 CAATAACAAC
* *
7192577 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
7192599 AAAATAGTAGCAAAATAGAGAG-
1 AAAATAGTAGCAAAATA-AGAGT
7192621 AAAATA
1 AAAATA
7192627 ATAAGAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.60, C:0.06, G:0.16, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:7197663 original size:18 final size:18
Alignment explanation
Indices: 7197640--7197910 Score: 160
Period size: 18 Copynumber: 14.6 Consensus size: 18
7197630 GAATAATTAT
7197640 TTATTCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
7197658 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAA
* * ** *
7197676 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAA
*
7197694 TTATTCAGTATC-GATCAA
1 TTATTCAGTAACAG-TCAA
7197712 TTGATCGGTTATCCAGTAACAGTCAA
1 TT-A-----T-T-CAGTAACAGTCAA
*
7197738 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
*
7197756 -TATTCAGTAACTA-TTAA
1 TTATTCAGTAAC-AGTCAA
*
7197773 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAGTCAA
* * *
7197791 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAA
*
7197810 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * * *
7197828 TTATTCAGTAATATTTAG
1 TTATTCAGTAACAGTCAA
7197846 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
*
7197865 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
7197882 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
7197900 TTATTCAGTAA
1 TTATTCAGTAA
7197911 TAATCAGTTA
Statistics
Matches: 193, Mismatches: 38, Indels: 44
0.70 0.14 0.16
Matches are distributed among these distances:
17 19 0.10
18 140 0.73
19 17 0.09
20 1 0.01
24 1 0.01
25 2 0.01
26 12 0.06
27 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:7197855 original size:72 final size:71
Alignment explanation
Indices: 7197721--7197922 Score: 219
Period size: 72 Copynumber: 2.8 Consensus size: 71
7197711 ATTGATCGGT
* *
7197721 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACTATTAAGTTATTCAGTAG
1 TATCCAGTAACAATCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTAAGTTATTCAGTAA
*
7197785 CAGTC-AT
64 CAGTCTAA
* * * * *
7197792 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTTAGTTATTCAGTAA
1 T-ATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTAAGTTATTCAGTAA
7197857 CAGTCTAA
64 CAGTCTAA
* * * * * *
7197865 TATCCAGTAACAGTCAATTATCCGGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTAAGTTATT
7197923 TTATACCTTT
Statistics
Matches: 108, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 1 0.01
72 91 0.84
73 16 0.15
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (71 bp):
TATCCAGTAACAATCAATTATTCAGTAAAATCAATTATTCAGTAATATTAAGTTATTCAGTAACA
GTCTAA
Found at i:7198097 original size:6 final size:6
Alignment explanation
Indices: 7198086--7198110 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7198076 ACAAATTCGG
7198086 AACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT A
7198111 TTCAACACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:7198139 original size:45 final size:45
Alignment explanation
Indices: 7198090--7198194 Score: 165
Period size: 45 Copynumber: 2.3 Consensus size: 45
7198080 ATTCGGAACA
* * * *
7198090 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCG
1 GTAACAGTAGCAGTAACAATATTCAACACACAAAATGCCGAATCG
*
7198135 GTAACGGTAGCAGTAACAATATTCAACACACAAAATGCCGAATCG
1 GTAACAGTAGCAGTAACAATATTCAACACACAAAATGCCGAATCG
7198180 GTAACAGTAGCAGTA
1 GTAACAGTAGCAGTA
7198195 GCGGTAACAG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (45 bp):
GTAACAGTAGCAGTAACAATATTCAACACACAAAATGCCGAATCG
Found at i:7198196 original size:51 final size:51
Alignment explanation
Indices: 7198082--7198203 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 51
7198072 CAGAACAAAT
* * * * *
7198082 TCGG-AACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAA
1 TCGGTAACAGTAGCAGTAGCAGTAACAATATTCAACACACAAAATGCCGAA
7198132 TCGGTAAC----G--GTAGCAGTAACAATATTCAACACACAAAATGCCGAA
1 TCGGTAACAGTAGCAGTAGCAGTAACAATATTCAACACACAAAATGCCGAA
*
7198177 TCGGTAACAGTAGCAGTAGCGGTAACA
1 TCGGTAACAGTAGCAGTAGCAGTAACA
7198204 GTAACTAGCA
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
45 40 0.68
49 1 0.02
50 4 0.07
51 14 0.24
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.18
Consensus pattern (51 bp):
TCGGTAACAGTAGCAGTAGCAGTAACAATATTCAACACACAAAATGCCGAA
Found at i:7198460 original size:5 final size:5
Alignment explanation
Indices: 7198452--7198492 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
7198442 ATTCCTTTCC
*
7198452 ATTCA ATTCA ATTCA ATTCA ATTCA ATTTA ATTCAA ATTCA
1 ATTCA ATTCA ATTCA ATTCA ATTCA ATTCA ATTC-A ATTCA
7198493 TTTTTCCACT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 28 0.85
6 5 0.15
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTCA
Found at i:7198871 original size:21 final size:21
Alignment explanation
Indices: 7198846--7198906 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
7198836 TTCAATTTCA
7198846 ATTCAATAA-CAATTCACATAT
1 ATTCAATAATCAATTCA-ATAT
7198867 ATTC-ATAAATCAATTCAATAT
1 ATTCAAT-AATCAATTCAATAT
* * *
7198888 AATCAATATTCAATCCAAT
1 ATTCAATAATCAATTCAAT
7198907 TCATATAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 23 0.68
22 9 0.26
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTCAATAATCAATTCAATAT
Found at i:7200127 original size:27 final size:28
Alignment explanation
Indices: 7200063--7200131 Score: 79
Period size: 27 Copynumber: 2.4 Consensus size: 28
7200053 GAATATCCAA
*
7200063 CCCAAACACACCCGGAATATTATAAATCCT
1 CCCAAACACA-CCGG-ATATAATAAATCCT
*
7200093 -CCATAACACACCGG-TATAATATATCCT
1 CCCA-AACACACCGGATATAATAAATCCT
7200120 CCCAAACACACC
1 CCCAAACACACC
7200132 AATAAGGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
27 19 0.54
28 3 0.09
29 7 0.20
30 6 0.17
ACGTcount: A:0.39, C:0.36, G:0.06, T:0.19
Consensus pattern (28 bp):
CCCAAACACACCGGATATAATAAATCCT
Found at i:7200756 original size:12 final size:12
Alignment explanation
Indices: 7200741--7200771 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7200731 TTCTCTTTTA
7200741 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
7200753 TTTTTCTTTCTC
1 TTTTTCTTTCCC
7200765 TTTTTCT
1 TTTTTCT
7200772 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:7200872 original size:16 final size:16
Alignment explanation
Indices: 7200851--7200881 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7200841 TTTATTATTT
7200851 TATTAACATAATATAA
1 TATTAACATAATATAA
*
7200867 TATTAATATAATATA
1 TATTAACATAATATA
7200882 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:7203429 original size:28 final size:28
Alignment explanation
Indices: 7203389--7203467 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
7203379 GCAATCAAAT
* * *
7203389 ATGGTACTCAGTGTACAAAATATTGAGA
1 ATGGCACTTAGTGTGCAAAATATTGAGA
* *
7203417 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCAAAATATTGAGA
* *
7203445 GTGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCAAAATAT
7203468 CGAATGATTC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCAAAATATTGAGA
Found at i:7204671 original size:28 final size:29
Alignment explanation
Indices: 7204640--7204717 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
7204630 TATTATTATT
*
7204640 TATATAAATATATAAATTA-ATTATAAAG
1 TATATAAATAAATAAATTACATTATAAAG
* * *
7204668 TATATTATTAAATTAATTACATTATAAA-
1 TATATAAATAAATAAATTACATTATAAAG
*
7204696 TATTATATTAAGAAATAAATTA
1 TA-TATA--AATAAATAAATTA
7204718 AATAAAGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
28 17 0.45
29 11 0.29
31 10 0.26
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (29 bp):
TATATAAATAAATAAATTACATTATAAAG
Found at i:7204717 original size:31 final size:28
Alignment explanation
Indices: 7204651--7204718 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
7204641 ATATAAATAT
**
7204651 ATAAATTAATTATAAAGTATATTATTAA
1 ATAAATTAATTATAAAGTATATTAAGAA
* *
7204679 ATTAATTACATTATAAATATTATATTAAGAA
1 ATAAATTA-ATTAT-AA-AGTATATTAAGAA
7204710 ATAAATTAA
1 ATAAATTAA
7204719 ATAAAGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 5 0.16
30 3 0.09
31 17 0.53
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAATTAATTATAAAGTATATTAAGAA
Found at i:7205615 original size:18 final size:18
Alignment explanation
Indices: 7205592--7205640 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
7205582 ATGTGAGGTA
*
7205592 AGTATTAATATTAGTATT
1 AGTATTATTATTAGTATT
7205610 AGTATTATTATTAGTATT
1 AGTATTATTATTAGTATT
*
7205628 ATTATTATTATTA
1 AGTATTATTATTA
7205641 TGAGTGGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (18 bp):
AGTATTATTATTAGTATT
Found at i:7205620 original size:3 final size:3
Alignment explanation
Indices: 7205594--7205641 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
7205584 GTGAGGTAAG
* * * *
7205594 TAT TAA TAT TAG TAT TAG TAT TAT TAT TAG TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7205642 GAGTGGGAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7205641 original size:12 final size:12
Alignment explanation
Indices: 7205594--7205641 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
7205584 GTGAGGTAAG
* *
7205594 TATTAATATTAG
1 TATTAGTATTAT
7205606 TATTAGTATTAT
1 TATTAGTATTAT
7205618 TATTAGTATTAT
1 TATTAGTATTAT
*
7205630 TATTATTATTAT
1 TATTAGTATTAT
7205642 GAGTGGGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (12 bp):
TATTAGTATTAT
Found at i:7205836 original size:24 final size:24
Alignment explanation
Indices: 7205782--7205852 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 24
7205772 TGTGTGAAGT
*
7205782 TGTGAAATAATTATTG-ATTG-AAA
1 TGTGAAA-AATGATTGAATTGAAAA
*
7205805 GGTGGAAAAATGATTGAATTGAAAA
1 TGT-GAAAAATGATTGAATTGAAAA
*
7205830 TGTGAAAATTGTAATTGAATTGA
1 TGTGAAAAATG--ATTGAATTGA
7205853 GAATATATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 9 0.23
24 15 0.38
25 5 0.13
26 10 0.26
ACGTcount: A:0.44, C:0.00, G:0.23, T:0.34
Consensus pattern (24 bp):
TGTGAAAAATGATTGAATTGAAAA
Found at i:7206055 original size:37 final size:39
Alignment explanation
Indices: 7205996--7206091 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
7205986 CGGATAGATT
* * * *
7205996 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
7206033 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
7206072 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
7206092 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:7212112 original size:28 final size:29
Alignment explanation
Indices: 7212081--7212158 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
7212071 TATTATTATT
*
7212081 TATATAAATATATAAATTA-ATTATAAAG
1 TATATAAATAAATAAATTACATTATAAAG
* * *
7212109 TATATTATTAAATTAATTACATTATAAA-
1 TATATAAATAAATAAATTACATTATAAAG
*
7212137 TATTATATTAAGAAATAAATTA
1 TA-TATA--AATAAATAAATTA
7212159 AATAAAGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
28 17 0.45
29 11 0.29
31 10 0.26
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (29 bp):
TATATAAATAAATAAATTACATTATAAAG
Found at i:7212158 original size:31 final size:28
Alignment explanation
Indices: 7212092--7212159 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
7212082 ATATAAATAT
**
7212092 ATAAATTAATTATAAAGTATATTATTAA
1 ATAAATTAATTATAAAGTATATTAAGAA
* *
7212120 ATTAATTACATTATAAATATTATATTAAGAA
1 ATAAATTA-ATTAT-AA-AGTATATTAAGAA
7212151 ATAAATTAA
1 ATAAATTAA
7212160 ATAAAGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 5 0.16
30 3 0.09
31 17 0.53
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAATTAATTATAAAGTATATTAAGAA
Found at i:7213059 original size:18 final size:18
Alignment explanation
Indices: 7213036--7213084 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
7213026 ATGTGAGGTA
*
7213036 AGTATTAATATTAGTATT
1 AGTATTATTATTAGTATT
7213054 AGTATTATTATTAGTATT
1 AGTATTATTATTAGTATT
*
7213072 ATTATTATTATTA
1 AGTATTATTATTA
7213085 TGAGTGGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (18 bp):
AGTATTATTATTAGTATT
Found at i:7213064 original size:3 final size:3
Alignment explanation
Indices: 7213038--7213085 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
7213028 GTGAGGTAAG
* * * *
7213038 TAT TAA TAT TAG TAT TAG TAT TAT TAT TAG TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7213086 GAGTGGGAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7213085 original size:12 final size:12
Alignment explanation
Indices: 7213038--7213085 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
7213028 GTGAGGTAAG
* *
7213038 TATTAATATTAG
1 TATTAGTATTAT
7213050 TATTAGTATTAT
1 TATTAGTATTAT
7213062 TATTAGTATTAT
1 TATTAGTATTAT
*
7213074 TATTATTATTAT
1 TATTAGTATTAT
7213086 GAGTGGGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (12 bp):
TATTAGTATTAT
Found at i:7213280 original size:24 final size:24
Alignment explanation
Indices: 7213226--7213297 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 24
7213216 TGTGTGAAGT
*
7213226 TGTGAAATAATTATTG-ATTG-AAA
1 TGTGAAA-AATGATTGAATTGAAAA
*
7213249 GGTGGAAAAATGATTGAATTGAAAA
1 TGT-GAAAAATGATTGAATTGAAAA
7213274 TGTGAAAAATTGTAATTGAATTGA
1 TGTGAAAAA-TG--ATTGAATTGA
7213298 GAATATATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 9 0.22
24 14 0.35
25 7 0.17
27 10 0.25
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (24 bp):
TGTGAAAAATGATTGAATTGAAAA
Found at i:7213500 original size:37 final size:39
Alignment explanation
Indices: 7213441--7213536 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
7213431 CGGATAGATT
* * * *
7213441 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
7213478 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
7213517 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
7213537 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:7221076 original size:24 final size:23
Alignment explanation
Indices: 7221022--7221087 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 23
7221012 ACCCATTAAA
7221022 AATTAATAATCTTAAAAGCTCAAACC
1 AATTAA-AAT-TTAAAA-CTCAAACC
7221048 AATTAAAATTTAAAACTCAATACTC
1 AATTAAAATTTAAAACTCAA-AC-C
*
7221073 -ATTAATATTTAAAAC
1 AATTAAAATTTAAAAC
7221088 CTAAACTGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
23 5 0.14
24 22 0.59
25 4 0.11
26 6 0.16
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.32
Consensus pattern (23 bp):
AATTAAAATTTAAAACTCAAACC
Found at i:7224818 original size:22 final size:19
Alignment explanation
Indices: 7224800--7224846 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
7224790 TTAATATAAT
7224800 ATTAATAATTTAAAGATATA
1 ATTAA-AATTTAAAGATATA
*
7224820 ATTAAAATTTAAA-AAATA
1 ATTAAAATTTAAAGATATA
7224838 ATTTAAAAT
1 A-TTAAAAT
7224847 AAGAATTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 5 0.20
19 15 0.60
20 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
ATTAAAATTTAAAGATATA
Found at i:7224838 original size:31 final size:31
Alignment explanation
Indices: 7224803--7224862 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
7224793 ATATAATATT
*
7224803 AATAATTTAAAGAT-ATAATTAAAATTTAAAA
1 AATAATTTAAA-ATAAGAATTAAAATTTAAAA
*
7224834 AATAATTTAAAATAAGAATTATAATTTAA
1 AATAATTTAAAATAAGAATTAAAATTTAA
7224863 TTCACGTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (31 bp):
AATAATTTAAAATAAGAATTAAAATTTAAAA
Found at i:7225811 original size:12 final size:12
Alignment explanation
Indices: 7225794--7225819 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7225784 TTAATTAATT
7225794 TAAAAAATTAAA
1 TAAAAAATTAAA
7225806 TAAAAAATTAAA
1 TAAAAAATTAAA
7225818 TA
1 TA
7225820 TTTTTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
TAAAAAATTAAA
Found at i:7232919 original size:20 final size:19
Alignment explanation
Indices: 7232883--7232924 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7232873 CACTTTTATC
*
7232883 TTTTTCATGTCTTTTCTTTG
1 TTTTTCATGTCTGTTC-TTG
7232903 TTTTTC-TGTTCTGTTCTTG
1 TTTTTCATG-TCTGTTCTTG
7232922 TTT
1 TTT
7232925 AATTGTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.02, C:0.14, G:0.12, T:0.71
Consensus pattern (19 bp):
TTTTTCATGTCTGTTCTTG
Found at i:7236785 original size:16 final size:16
Alignment explanation
Indices: 7236761--7236813 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
7236751 TGGTTCATTG
*
7236761 TAATAGAATAGAGCTA
1 TAATTGAATAGAGCTA
7236777 TAATTGAATAGAGCTA
1 TAATTGAATAGAGCTA
*
7236793 TAA-TGAAATAGAGCTG
1 TAATTG-AATAGAGCTA
7236809 TAATT
1 TAATT
7236814 AGTAATTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 2 0.06
16 30 0.91
17 1 0.03
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.30
Consensus pattern (16 bp):
TAATTGAATAGAGCTA
Found at i:7242792 original size:29 final size:29
Alignment explanation
Indices: 7242759--7242816 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
7242749 TCAAAGGTTC
7242759 TAACAAACCCAATTTACAAAAGCTGCAAA
1 TAACAAACCCAATTTACAAAAGCTGCAAA
*
7242788 TAACAAACCCAATTTACAGAAGCTGCAAA
1 TAACAAACCCAATTTACAAAAGCTGCAAA
7242817 ACATGATTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.50, C:0.24, G:0.09, T:0.17
Consensus pattern (29 bp):
TAACAAACCCAATTTACAAAAGCTGCAAA
Found at i:7245735 original size:46 final size:46
Alignment explanation
Indices: 7245668--7245842 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
7245658 TGTGACCCGC
*
7245668 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
7245714 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * ** *
7245764 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
7245807 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
7245843 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.58
47 27 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:7245787 original size:93 final size:93
Alignment explanation
Indices: 7245675--7245846 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
7245665 CGCCCATAAG
** *
7245675 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
7245740 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
7245768 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
7245833 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
7245847 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:7252034 original size:132 final size:131
Alignment explanation
Indices: 7251770--7252035 Score: 370
Period size: 131 Copynumber: 2.0 Consensus size: 131
7251760 TTGCCTCGCC
* * * * * * *
7251770 TTAGAAAACGCGAGTGAAGTTCCAAAGGGATATTCGATTATTTTGAACAAACGGGAGATTGCGAC
1 TTAGAAAACACGAATGAAATTCCAAAGGGATATTCGATTATGTTGAACAAACGAGAAATTGCAAC
* ** *
7251835 CCAGCACGATAGGCACTATTCCCCGAATTGCCAAACATCGAACATTTCCTTCGTTTTAAAGAGTT
66 CCAGCACGATAGGCACTATTCCCCAAATTGCCAAACATCGAACATCGCCTTCGTTTTAAAGAATT
7251900 T
131 T
* * *
7251901 TTAGAAAACATGAATGAAATTCTAAAGGGATATTCGATTATGTTGAGCAAACGAGAAATTGCAAC
1 TTAGAAAACACGAATGAAATTCCAAAGGGATATTCGATTATGTTGAACAAACGAGAAATTGCAAC
* * *
7251966 CCAGCACGTTAGGGCACTATTCCGCAAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAAT
66 CCAGCACGATA-GGCACTATTCCCCAAATTGCCAAACATCGAACATCGCCTTCGTTTTAAAGAAT
7252031 TT
130 TT
7252033 TTA
1 TTA
7252036 AATGAATAAT
Statistics
Matches: 117, Mismatches: 17, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
131 65 0.56
132 52 0.44
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (131 bp):
TTAGAAAACACGAATGAAATTCCAAAGGGATATTCGATTATGTTGAACAAACGAGAAATTGCAAC
CCAGCACGATAGGCACTATTCCCCAAATTGCCAAACATCGAACATCGCCTTCGTTTTAAAGAATT
T
Found at i:7253046 original size:10 final size:10
Alignment explanation
Indices: 7253033--7253075 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
7253023 AAATAAATAA
7253033 ATAGATATAT
1 ATAGATATAT
* *
7253043 ATAGTTACAT
1 ATAGATATAT
7253053 ATAGATATAT
1 ATAGATATAT
* *
7253063 ATACATGTAT
1 ATAGATATAT
7253073 ATA
1 ATA
7253076 AATGAAAGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (10 bp):
ATAGATATAT
Found at i:7255376 original size:46 final size:46
Alignment explanation
Indices: 7255309--7255483 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
7255299 TGTAACCCGC
7255309 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
7255355 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * ** * *
7255405 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
* *
7255448 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
7255484 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.57
47 25 0.23
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:7255429 original size:93 final size:93
Alignment explanation
Indices: 7255317--7255487 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
7255307 GCCCATAAGT
** *
7255317 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTC-AGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGA-ACTCAACTCA
7255381 ACGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
* *
7255410 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
*
7255475 CGAGTTCGGATGC
66 CGAGCTCGGATGC
7255488 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:7258620 original size:50 final size:50
Alignment explanation
Indices: 7258496--7258744 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
7258486 GATAATAACA
* * ** * *
7258496 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7258547 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7258597 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
7258647 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7258702 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7258745 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7258674 original size:100 final size:104
Alignment explanation
Indices: 7258495--7258744 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
7258485 TGATAATAAC
**
7258495 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7258560 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
7258597 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7258660 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
7258702 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7258745 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:7258860 original size:13 final size:13
Alignment explanation
Indices: 7258839--7258870 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7258829 GCTTGGATCA
*
7258839 TCATCAAATAAAT
1 TCATAAAATAAAT
7258852 TCATAAAATAAAT
1 TCATAAAATAAAT
7258865 TCATAA
1 TCATAA
7258871 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7259117 original size:30 final size:30
Alignment explanation
Indices: 7259082--7259139 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7259072 CCTCGACTCT
*
7259082 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7259112 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7259140 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7266220 original size:50 final size:50
Alignment explanation
Indices: 7266096--7266344 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
7266086 GATAATAACA
* * ** * *
7266096 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7266147 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7266197 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
7266247 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7266302 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7266345 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7266274 original size:100 final size:104
Alignment explanation
Indices: 7266095--7266344 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
7266085 TGATAATAAC
**
7266095 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7266160 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
7266197 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7266260 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
7266302 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7266345 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:7266460 original size:13 final size:13
Alignment explanation
Indices: 7266439--7266470 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7266429 GCTTGGATCA
*
7266439 TCATCAAATAAAT
1 TCATAAAATAAAT
7266452 TCATAAAATAAAT
1 TCATAAAATAAAT
7266465 TCATAA
1 TCATAA
7266471 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7266717 original size:30 final size:30
Alignment explanation
Indices: 7266682--7266739 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7266672 CCTCGACTCT
*
7266682 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7266712 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7266740 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7269185 original size:20 final size:20
Alignment explanation
Indices: 7269148--7269185 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7269138 TGATGGGGAG
*
7269148 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
7269168 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
7269186 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:7271148 original size:46 final size:47
Alignment explanation
Indices: 7271081--7271169 Score: 162
Period size: 46 Copynumber: 1.9 Consensus size: 47
7271071 AGTGTGCTCT
7271081 CTGATATGAAATGTATAAGACCATGGTTGAAAGAT-ACCATGGCAGC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATAACCATGGCAGC
*
7271127 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATAACCATGG
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATAACCATGG
7271170 TTGAAAGATA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
46 34 0.83
47 7 0.17
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (47 bp):
CTGATATGAAATGTATAAGACCATGGTTGAAAGATAACCATGGCAGC
Found at i:7271168 original size:17 final size:17
Alignment explanation
Indices: 7271146--7271179 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7271136 AATGTGTAAG
7271146 ACCATGGTTGAAAGATA
1 ACCATGGTTGAAAGATA
7271163 ACCATGGTTGAAAGATA
1 ACCATGGTTGAAAGATA
7271180 TCATGGCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
ACCATGGTTGAAAGATA
Found at i:7271199 original size:63 final size:62
Alignment explanation
Indices: 7271100--7271231 Score: 237
Period size: 63 Copynumber: 2.1 Consensus size: 62
7271090 AATGTATAAG
*
7271100 ACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
*
7271162 AACCATGGTTGAAAGATATCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 -ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
7271225 ACCATGG
1 ACCATGG
7271232 CAACGTGATA
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
62 7 0.10
63 60 0.90
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.24
Consensus pattern (62 bp):
ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
Found at i:7271216 original size:46 final size:46
Alignment explanation
Indices: 7271163--7271279 Score: 171
Period size: 46 Copynumber: 2.5 Consensus size: 46
7271153 TTGAAAGATA
* ***
7271163 ACCATGGTTGAAAGATATCATGGCAACCTGATATGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAACAAG
*
7271209 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAACAAG
* *
7271255 ACCATGGTTGAAAGACACTATGGCA
1 ACCATGGTTGAAAGATACCATGGCA
7271280 TCATGTCAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAACAAG
Found at i:7281297 original size:21 final size:21
Alignment explanation
Indices: 7281254--7281298 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
7281244 ATAACCTGTA
* *
7281254 AAATTATTAATAATTTCATTT
1 AAATTATTAATAAATTAATTT
7281275 AAATTA-TAATAAATTAATATT
1 AAATTATTAATAAATTAAT-TT
7281296 AAA
1 AAA
7281299 ACTATAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATTATTAATAAATTAATTT
Found at i:7285187 original size:46 final size:46
Alignment explanation
Indices: 7285103--7285469 Score: 318
Period size: 46 Copynumber: 7.6 Consensus size: 46
7285093 TTTGAGTACT
* * *
7285103 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCT-TTAGCTACACTTA
1 TCTGATCAAGTGA-CAAGTGATAAGTGATAGCTATCAGCTACACTTA
* * *
7285149 TCTGATCAAGTGACAAGTGGA-AAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAAGT-GATAAGTGAT-AG--CTA---TCAGCTACACTTA
* * *
7285201 TCTGATCAAGTGATAAAGTGATAAGTGATAGCT-TCGGCTATACTTA
1 TCTGATCAAGTGA-CAAGTGATAAGTGATAGCTATCAGCTACACTTA
7285247 TCTGATCAAGTGACAAAGTGATAAGTGATAGCT-TCAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAGCTATCAGCTACACTTA
*
7285293 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCT-TCGGCTACACTTA
1 TCTGATCAAGTGAC-------AAGTGATAAGTGATAGCTATCAGCTACACTTA
* *
7285345 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTA
1 TCTGATCAAGTGAC-------AAGTGATAAGTGATAGCTATCAGCTACACTTA
* *
7285397 TCTGATCAAGAGACAAAGTGATAAGTGATAGCT-TTAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAGCTATCAGCTACACTTA
*
7285443 TCTGATC-AGGGACAAGTGATAAGTGAT
1 TCTGATCAAGTGACAAGTGATAAGTGAT
7285470 CATACGTAAG
Statistics
Matches: 285, Mismatches: 19, Indels: 36
0.84 0.06 0.11
Matches are distributed among these distances:
44 14 0.05
45 15 0.05
46 122 0.43
48 1 0.00
50 1 0.00
52 121 0.42
53 11 0.04
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAGTGATAAGTGATAGCTATCAGCTACACTTA
Found at i:7285188 original size:52 final size:50
Alignment explanation
Indices: 7285116--7285469 Score: 437
Period size: 52 Copynumber: 7.2 Consensus size: 50
7285106 GATCAAGTGA
* **
7285116 TAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAG
1 TAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAG
* *
7285166 TGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG---A-
1 T--AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAG
*
7285214 TAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC---
1 TAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAG
*
7285261 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAG
1 TAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAG
7285310 TGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAG
1 T--AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAG
* *
7285362 TGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC---
1 T--AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAG
** *
7285411 -AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATC-AGGGACAAG
1 TAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAG
7285459 TGATAAGTGAT
1 T-A-AAGTGAT
7285470 CATACGTAAG
Statistics
Matches: 272, Mismatches: 16, Indels: 31
0.85 0.05 0.10
Matches are distributed among these distances:
45 5 0.02
46 123 0.45
48 1 0.00
49 1 0.00
50 2 0.01
51 7 0.03
52 133 0.49
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (50 bp):
TAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAG
Found at i:7285223 original size:98 final size:97
Alignment explanation
Indices: 7285103--7285469 Score: 503
Period size: 98 Copynumber: 3.8 Consensus size: 97
7285093 TTTGAGTACT
* *
7285103 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
7285168 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
7285201 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
7285261 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
7285293 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
7285358 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
7285397 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATC-AGGGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
7285461 ATAAGTGAT
66 A-AAGTGAT
7285470 CATACGTAAG
Statistics
Matches: 241, Mismatches: 15, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 2 0.01
97 17 0.07
98 138 0.57
101 1 0.00
104 41 0.17
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:7301831 original size:26 final size:27
Alignment explanation
Indices: 7301781--7301832 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
7301771 CATATTCAGG
7301781 CGAAATCAGAGATAAGATTACCACAGC
1 CGAAATCAGAGATAAGATTACCACAGC
*
7301808 CGAAATCATAGAT-AGATTACCACAG
1 CGAAATCAGAGATAAGATTACCACAG
7301833 GTGGGAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.17
Consensus pattern (27 bp):
CGAAATCAGAGATAAGATTACCACAGC
Found at i:7304143 original size:15 final size:16
Alignment explanation
Indices: 7304125--7304154 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7304115 TGACATTAAT
7304125 ATTTAA-CAAAATAAC
1 ATTTAATCAAAATAAC
7304140 ATTTAATCAAAATAA
1 ATTTAATCAAAATAA
7304155 TTACGGACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTTAATCAAAATAAC
Found at i:7304475 original size:31 final size:30
Alignment explanation
Indices: 7304380--7304479 Score: 87
Period size: 31 Copynumber: 3.3 Consensus size: 30
7304370 GATTAAATTA
* *
7304380 AAATTAAAATTT-TAAATATATATTTAAATT
1 AAATTAAAATTTATATATATA-ATTTACATT
** * * *
7304410 GTATTCAAAATTTAACATATATAA-CTACACT
1 AAATT-AAAATTT-ATATATATAATTTACATT
7304441 AAATTAAAATTTATATATATAATTTCACATT
1 AAATTAAAATTTATATATATAATTT-ACATT
7304472 AAATTAAA
1 AAATTAAA
7304480 TTAAAATTAA
Statistics
Matches: 53, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
29 9 0.17
30 11 0.21
31 26 0.49
32 1 0.02
33 6 0.11
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.41
Consensus pattern (30 bp):
AAATTAAAATTTATATATATAATTTACATT
Found at i:7307993 original size:14 final size:16
Alignment explanation
Indices: 7307964--7307997 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
7307954 TGTTTTTATC
7307964 AAAATAAAATATTTAA
1 AAAATAAAATATTTAA
7307980 AAAAT-AAATA-TTAA
1 AAAATAAAATATTTAA
7307994 AAAA
1 AAAA
7307998 CACATTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 5 0.28
16 5 0.28
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATAAAATATTTAA
Found at i:7312937 original size:21 final size:21
Alignment explanation
Indices: 7312911--7312950 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7312901 TTGGGTCATC
7312911 TTCTTCTTCCTCTTGTTCTGG
1 TTCTTCTTCCTCTTGTTCTGG
* *
7312932 TTCTTCTTCTTGTTGTTCT
1 TTCTTCTTCCTCTTGTTCT
7312951 TCTTCAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.25, G:0.12, T:0.62
Consensus pattern (21 bp):
TTCTTCTTCCTCTTGTTCTGG
Found at i:7314818 original size:14 final size:14
Alignment explanation
Indices: 7314799--7314826 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7314789 TTTGCTCTAC
7314799 TACTTATTCCGCTT
1 TACTTATTCCGCTT
7314813 TACTTATTCCGCTT
1 TACTTATTCCGCTT
7314827 CACAGTGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.07, T:0.50
Consensus pattern (14 bp):
TACTTATTCCGCTT
Found at i:7330845 original size:21 final size:21
Alignment explanation
Indices: 7330806--7330845 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7330796 TATTTAAGTA
*
7330806 TAATTTTTTAAAATTTATTCT
1 TAATTTTTTAAAATATATTCT
7330827 TAATTTTTTGAAAA-ATATT
1 TAATTTTTT-AAAATATATT
7330846 TATTTTAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TAATTTTTTAAAATATATTCT
Found at i:7337205 original size:9 final size:9
Alignment explanation
Indices: 7337184--7337253 Score: 52
Period size: 10 Copynumber: 7.4 Consensus size: 9
7337174 TTATCTATAG
7337184 TTTTTAATA
1 TTTTTAATA
*
7337193 -TTTTATTA
1 TTTTTAATA
*
7337201 TTTTTAAAA
1 TTTTTAATA
**
7337210 TTGTGAAATGA
1 TT-TTTAAT-A
*
7337221 TTTTAAATA
1 TTTTTAATA
7337230 TATTTTAATAA
1 T-TTTTAAT-A
7337241 TTTTTAATA
1 TTTTTAATA
7337250 TTTT
1 TTTT
7337254 GTTGTTCAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
8 7 0.15
9 15 0.31
10 21 0.44
11 5 0.10
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (9 bp):
TTTTTAATA
Found at i:7337784 original size:19 final size:19
Alignment explanation
Indices: 7337760--7337815 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 19
7337750 TCTACGTAAC
7337760 ATTAAATATTTTTTAAATA
1 ATTAAATATTTTTTAAATA
*
7337779 ATTAAATCA-TTTTTACATA
1 ATTAAAT-ATTTTTTAAATA
7337798 AGTTTAAAATATTTTTTA
1 A--TT-AAATATTTTTTA
7337816 TTGATATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 17 0.55
20 1 0.03
21 3 0.10
22 10 0.32
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (19 bp):
ATTAAATATTTTTTAAATA
Found at i:7339394 original size:27 final size:27
Alignment explanation
Indices: 7339364--7339418 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
7339354 GTTTGTATTG
*
7339364 TATAAAAATA-AATATTTTAAAATTAAA
1 TATAAAAATATAA-ATTTTAAAAATAAA
* *
7339391 TATACATATATAAATTTTAAAAATAAA
1 TATAAAAATATAAATTTTAAAAATAAA
7339418 T
1 T
7339419 TAATTAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (27 bp):
TATAAAAATATAAATTTTAAAAATAAA
Found at i:7341436 original size:31 final size:31
Alignment explanation
Indices: 7341399--7341459 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
7341389 TTAGTTACTA
7341399 AACTATTTAAAAATT-TTCATTTAAGTCATTG
1 AACTATTTAAAAATTCTT-ATTTAAGTCATTG
*
7341430 AACTATTTAAAAGTTCTTATTTAAGTCATT
1 AACTATTTAAAAATTCTTATTTAAGTCATT
7341460 AGGTTGTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 26 0.93
32 2 0.07
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.46
Consensus pattern (31 bp):
AACTATTTAAAAATTCTTATTTAAGTCATTG
Found at i:7343894 original size:12 final size:12
Alignment explanation
Indices: 7343877--7343902 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7343867 ATCAGATTAA
7343877 ATTATAATTTTT
1 ATTATAATTTTT
7343889 ATTATAATTTTT
1 ATTATAATTTTT
7343901 AT
1 AT
7343903 GATAGTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATTATAATTTTT
Found at i:7348379 original size:22 final size:22
Alignment explanation
Indices: 7348354--7348398 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7348344 TTTAATAAAG
7348354 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
7348376 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
7348398 A
1 A
7348399 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:7355200 original size:19 final size:19
Alignment explanation
Indices: 7355158--7355258 Score: 75
Period size: 19 Copynumber: 5.3 Consensus size: 19
7355148 ATGGAAGTAA
*
7355158 TAAAATATGTATAATAAA-AT
1 TAAAATGTGTA-AA-AAATAT
7355178 TAAAATGTGTAAAAAATAT
1 TAAAATGTGTAAAAAATAT
* *
7355197 TAAAATAATG-AAAGTAATA-
1 TAAAAT-GTGTAAA-AAATAT
* * * *
7355216 GAATATGTATAATAAA-AT
1 TAAAATGTGTAAAAAATAT
7355234 TAAAATGTGTAAAAAATAT
1 TAAAATGTGTAAAAAATAT
7355253 TAAAAT
1 TAAAAT
7355259 AAAGTCAGCT
Statistics
Matches: 62, Mismatches: 13, Indels: 13
0.70 0.15 0.15
Matches are distributed among these distances:
17 1 0.02
18 18 0.29
19 27 0.44
20 16 0.26
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (19 bp):
TAAAATGTGTAAAAAATAT
Found at i:7355221 original size:56 final size:56
Alignment explanation
Indices: 7355152--7355260 Score: 209
Period size: 56 Copynumber: 1.9 Consensus size: 56
7355142 TAATCGATGG
7355152 AAGTAATAAAATATGTATAATAAAATTAAAATGTGTAAAAAATATTAAAATAATGA
1 AAGTAATAAAATATGTATAATAAAATTAAAATGTGTAAAAAATATTAAAATAATGA
*
7355208 AAGTAATAGAATATGTATAATAAAATTAAAATGTGTAAAAAATATTAAAATAA
1 AAGTAATAAAATATGTATAATAAAATTAAAATGTGTAAAAAATATTAAAATAA
7355261 AGTCAGCTGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (56 bp):
AAGTAATAAAATATGTATAATAAAATTAAAATGTGTAAAAAATATTAAAATAATGA
Found at i:7390926 original size:65 final size:65
Alignment explanation
Indices: 7390845--7390975 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
7390835 TCCGAAAGTC
7390845 CAAATCCATTATCAGCCTCTCTTTATGTTTTTATCTATTTTAAATCTTAATCTACTTCTAACAGT
1 CAAATCCATTATCAGCCTCTCTTTATGTTTTTATCTATTTTAAATCTTAATCTACTTCTAACAGT
7390910 CAAATCCATTATCAGCCTCTCTTTATGTTTTTATCTATTTTAAATCTTAATCTACTTCTAACAGT
1 CAAATCCATTATCAGCCTCTCTTTATGTTTTTATCTATTTTAAATCTTAATCTACTTCTAACAGT
7390975 C
1 C
7390976 CCAAGTCCCA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.27, C:0.22, G:0.05, T:0.46
Consensus pattern (65 bp):
CAAATCCATTATCAGCCTCTCTTTATGTTTTTATCTATTTTAAATCTTAATCTACTTCTAACAGT
Found at i:7400286 original size:5 final size:5
Alignment explanation
Indices: 7400278--7400644 Score: 58
Period size: 5 Copynumber: 68.4 Consensus size: 5
7400268 CCGTTTTTTT
* * * *
7400278 TTTCA TTTCAA TTTATA TTTTA ATTTCA TTTTA TTTTA TATTCA TTTCACA
1 TTTCA TTTC-A TTT-CA TTTCA -TTTCA TTTCA TTTCA T-TTCA TTT--CA
* * *
7400329 TTTCA TTTCA TTACA TTTCA TTTAAA TTT-A TTT-- TTTCA TTTAAA TTT--
1 TTTCA TTTCA TTTCA TTTCA TTT-CA TTTCA TTTCA TTTCA TTT-CA TTTCA
* ** * *
7400376 TTT-A TTTAAA TTT-A TTTTT TTTCA TATTCA TTT-T TTTCTG TTTCCA
1 TTTCA TTT-CA TTTCA TTTCA TTTCA T-TTCA TTTCA TTTC-A TTT-CA
** * * *
7400422 TTATTT TTTCA TTTCAA TTTATA TTTTA ATTTTA TTTCA TATTCA TTTCAA
1 TT-TCA TTTCA TTTC-A TTT-CA TTTCA -TTTCA TTTCA T-TTCA TTTC-A
* * *
7400473 TGTTAA TTTCA TTTCA CATTCA TTACAA CTTTCA TTTCACA TTTCA TTT--
1 T-TTCA TTTCA TTTCA -TTTCA TTTC-A -TTTCA TTT--CA TTTCA TTTCA
** *
7400522 TTTGTT TTTCA TTTTCA TTT-- TTTCCCA TTTCAA TTT-T TTTCA TATTCA
1 TTT-CA TTTCA -TTTCA TTTCA TTT--CA TTTC-A TTTCA TTTCA T-TTCA
** * *
7400570 TTTTT TTCTCA TTTCAA TTTATA TTTTA ATTTCA TTTCAAA TTTCA TTTCA
1 TTTCA TT-TCA TTTC-A TTT-CA TTTCA -TTTCA TTTC--A TTTCA TTTCA
7400621 TTTCA TATTCA TTTCA TATTCA TT
1 TTTCA T-TTCA TTTCA T-TTCA TT
7400645 CCAATTTTTT
Statistics
Matches: 277, Mismatches: 36, Indels: 98
0.67 0.09 0.24
Matches are distributed among these distances:
3 12 0.04
4 17 0.06
5 113 0.41
6 110 0.40
7 25 0.09
ACGTcount: A:0.25, C:0.14, G:0.01, T:0.61
Consensus pattern (5 bp):
TTTCA
Found at i:7400382 original size:13 final size:14
Alignment explanation
Indices: 7400358--7400388 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
7400348 ATTTAAATTT
7400358 ATTTTTTCATTTAA
1 ATTTTTTCATTTAA
7400372 ATTTTTT-ATTTAA
1 ATTTTTTCATTTAA
7400385 ATTT
1 ATTT
7400389 ATTTTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (14 bp):
ATTTTTTCATTTAA
Found at i:7400494 original size:23 final size:22
Alignment explanation
Indices: 7400477--7400520 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 22
7400467 TTTCAATGTT
7400477 AATTTCATTTCACATTCATTAC
1 AATTTCATTTCACATTCATTAC
7400499 AACTTTCATTTCACATTTCATT
1 AA-TTTCATTTCACA-TTCATT
7400521 TTTTGTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 2 0.10
23 12 0.60
24 6 0.30
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.48
Consensus pattern (22 bp):
AATTTCATTTCACATTCATTAC
Found at i:7400511 original size:28 final size:28
Alignment explanation
Indices: 7400447--7400500 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
7400437 AATTTATATT
* * *
7400447 TTAATTTTATTTCATATTCATTTCAATG
1 TTAATTTCATTTCACATTCATTACAATG
7400475 TTAATTTCATTTCACATTCATTACAA
1 TTAATTTCATTTCACATTCATTACAA
7400501 CTTTCATTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.02, T:0.52
Consensus pattern (28 bp):
TTAATTTCATTTCACATTCATTACAATG
Found at i:7400517 original size:12 final size:12
Alignment explanation
Indices: 7400478--7400521 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
7400468 TTCAATGTTA
7400478 ATTTCATTTCAC
1 ATTTCATTTCAC
*
7400490 A-TTCATTACA-
1 ATTTCATTTCAC
7400500 ACTTTCATTTCAC
1 A-TTTCATTTCAC
7400513 ATTTCATTT
1 ATTTCATTT
7400522 TTTGTTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
10 1 0.04
11 8 0.30
12 17 0.63
13 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTTCATTTCAC
Found at i:7400557 original size:16 final size:16
Alignment explanation
Indices: 7400534--7400589 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
7400524 TGTTTTTCAT
*
7400534 TTTC-ATTTTTTCCCA
1 TTTCAATTTTTTCTCA
7400549 TTTCAATTTTTT-TCA
1 TTTCAATTTTTTCTCA
*
7400564 TATTCATTTTTTTCTCA
1 T-TTCAATTTTTTCTCA
7400581 TTTCAATTT
1 TTTCAATTT
7400590 ATATTTTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 7 0.20
16 24 0.69
17 4 0.11
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTCAATTTTTTCTCA
Found at i:7400561 original size:17 final size:16
Alignment explanation
Indices: 7400534--7400589 Score: 64
Period size: 15 Copynumber: 3.6 Consensus size: 16
7400524 TGTTTTTCAT
*
7400534 TTTC-ATTTTTTCCCA
1 TTTCAATTTTTTTCCA
7400549 TTTCAATTTTTTT-CA
1 TTTCAATTTTTTTCCA
7400564 TATTC-ATTTTTTTCTCA
1 T-TTCAATTTTTTTC-CA
7400581 TTTCAATTT
1 TTTCAATTT
7400590 ATATTTTAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
15 15 0.43
16 13 0.37
17 7 0.20
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTCAATTTTTTTCCA
Found at i:7400583 original size:32 final size:31
Alignment explanation
Indices: 7400526--7400589 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 31
7400516 TCATTTTTTG
*
7400526 TTTTTCATTTTCATTTTTTCCCATTTCAATT
1 TTTTTCATATTCATTTTTTCCCATTTCAATT
*
7400557 TTTTTCATATTCATTTTTTTCTCATTTCAATT
1 TTTTTCATATTCA-TTTTTTCCCATTTCAATT
7400589 T
1 T
7400590 ATATTTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 12 0.40
32 18 0.60
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.66
Consensus pattern (31 bp):
TTTTTCATATTCATTTTTTCCCATTTCAATT
Found at i:7400633 original size:11 final size:11
Alignment explanation
Indices: 7400610--7400644 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
7400600 TTCATTTCAA
7400610 ATTTCAT-TTC
1 ATTTCATATTC
7400620 ATTTCATATTC
1 ATTTCATATTC
7400631 ATTTCATATTC
1 ATTTCATATTC
7400642 ATT
1 ATT
7400645 CCAATTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.26, C:0.17, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTTCATATTC
Found at i:7400642 original size:17 final size:17
Alignment explanation
Indices: 7400578--7400643 Score: 73
Period size: 17 Copynumber: 3.8 Consensus size: 17
7400568 CATTTTTTTC
7400578 TCATTTCAATTT-ATATTT
1 TCATTTC-ATTTCATA-TT
* *
7400596 TAATTTCATTTCAAATT
1 TCATTTCATTTCATATT
7400613 TCATTTCATTTCATA-T
1 TCATTTCATTTCATATT
7400629 TCATTTCATATTCAT
1 TCATTTCAT-TTCAT
7400644 TCCAATTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
16 10 0.24
17 24 0.57
18 8 0.19
ACGTcount: A:0.29, C:0.15, G:0.00, T:0.56
Consensus pattern (17 bp):
TCATTTCATTTCATATT
Found at i:7400750 original size:26 final size:25
Alignment explanation
Indices: 7400695--7400749 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
7400685 ATTTTTTCTC
* * *
7400695 ATTTTAAATTTCATTTTATTTCAAA
1 ATTTTAAAATTCATTTAAATTCAAA
7400720 ATTTTAAAATTCATTTAAATTCAAA
1 ATTTTAAAATTCATTTAAATTCAAA
*
7400745 TTTTT
1 ATTTT
7400750 TCTCATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (25 bp):
ATTTTAAAATTCATTTAAATTCAAA
Found at i:7401914 original size:18 final size:17
Alignment explanation
Indices: 7401883--7401916 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7401873 AGTTGATGAA
*
7401883 TTGAATTAATTTGTATT
1 TTGAATTAAATTGTATT
7401900 TTGAGATTAAATTGTAT
1 TTGA-ATTAAATTGTAT
7401917 ATAATTGTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (17 bp):
TTGAATTAAATTGTATT
Found at i:7402660 original size:28 final size:28
Alignment explanation
Indices: 7402603--7402665 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
7402593 ATTATATATC
* ** *
7402603 CATTTCAATTTCTATTCAATTTAAATTT
1 CATTTCAACTTCTATTCAATAAAAAATT
7402631 CATTTCAACTTC-ATTTCAATAAAAAATT
1 CATTTCAACTTCTA-TTCAATAAAAAATT
7402659 CAATTTC
1 C-ATTTC
7402666 TTTTTTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 1 0.03
28 23 0.79
29 5 0.17
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (28 bp):
CATTTCAACTTCTATTCAATAAAAAATT
Found at i:7402762 original size:109 final size:109
Alignment explanation
Indices: 7402620--7402927 Score: 557
Period size: 107 Copynumber: 2.8 Consensus size: 109
7402610 ATTTCTATTC
* *
7402620 AATTTAAATTTCATTTCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACCCAT
1 AATTT-AATTTCATTCCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACTCAT
7402685 ATATCTTTTTTAAATATAATTTCATTTCATTCCCAAATTTAATTT
65 ATATCTTTTTTAAATATAATTTCATTTCATTCCCAAATTTAATTT
*
7402730 AATTTAATTTCATTCCAACTTCATTTAAATAAAAAATTCAATTTCTTTTTTAAATTTTACTC--A
1 AATTTAATTTCATTCCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACTCATA
7402793 TATCTTTTTTAAATATAATTTCATTTCATTCCCAAATTTAATTT
66 TATCTTTTTTAAATATAATTTCATTTCATTCCCAAATTTAATTT
7402837 AATTTAATTTCATTCCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACTCATA
1 AATTTAATTTCATTCCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACTCATA
*
7402902 TATCTTTTTTAAATATAATTCCATTT
66 TATCTTTTTTAAATATAATTTCATTT
7402928 TAATTTCACT
Statistics
Matches: 191, Mismatches: 5, Indels: 5
0.95 0.02 0.02
Matches are distributed among these distances:
107 106 0.55
109 80 0.42
110 5 0.03
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.50
Consensus pattern (109 bp):
AATTTAATTTCATTCCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACTCATA
TATCTTTTTTAAATATAATTTCATTTCATTCCCAAATTTAATTT
Found at i:7406090 original size:7 final size:7
Alignment explanation
Indices: 7406078--7406110 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
7406068 CTAAAGCTAC
7406078 CACTTAT
1 CACTTAT
7406085 CACTTAT
1 CACTTAT
7406092 CACTTAT
1 CACTTAT
7406099 CACTTAT
1 CACTTAT
7406106 CACTT
1 CACTT
7406111 GTAACTGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.42
Consensus pattern (7 bp):
CACTTAT
Found at i:7406101 original size:58 final size:58
Alignment explanation
Indices: 7406037--7406223 Score: 248
Period size: 58 Copynumber: 3.1 Consensus size: 58
7406027 TTGATCACAT
*
7406037 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCT---AC----CACTTATCACTTGTCAC
*
7406102 TTATCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
* * * *
7406160 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTGTCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
*
7406218 TGATCA
1 TTATCA
7406224 GAAGTACTCA
Statistics
Matches: 113, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
58 73 0.65
62 2 0.02
65 38 0.34
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (58 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
Found at i:7406121 original size:21 final size:21
Alignment explanation
Indices: 7406078--7406121 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
7406068 CTAAAGCTAC
* *
7406078 CACTTATCACTTATCACTTAT
1 CACTTATCACTTATAACTGAT
*
7406099 CACTTATCACTTGTAACTGAT
1 CACTTATCACTTATAACTGAT
7406120 CA
1 CA
7406122 GATAAGTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.27, G:0.05, T:0.39
Consensus pattern (21 bp):
CACTTATCACTTATAACTGAT
Found at i:7406141 original size:65 final size:64
Alignment explanation
Indices: 7406037--7406223 Score: 269
Period size: 65 Copynumber: 3.0 Consensus size: 64
7406027 TTGATCACAT
*
7406037 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTATCAC
1 TTATCACTTGT-ACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTATCAC
*
7406102 TTATCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTGTCAC
1 TTATCACTTGT-ACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTATCAC
* * *
7406167 TTAT--C----ACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTGTCACTGATCA
1 TTATCACTTGTACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTATCA
7406224 GAAGTACTCA
Statistics
Matches: 115, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
58 48 0.42
63 1 0.01
65 66 0.57
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (64 bp):
TTATCACTTGTACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTATCAC
Found at i:7408855 original size:46 final size:46
Alignment explanation
Indices: 7408790--7408975 Score: 248
Period size: 46 Copynumber: 4.0 Consensus size: 46
7408780 TTATCTTTGA
* * * * * ** *
7408790 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
***
7408836 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
7408882 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
7408928 CA-GATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
7408974 CA
1 CA
7408976 GAGAGCACAC
Statistics
Matches: 126, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 125 0.99
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:7411005 original size:11 final size:11
Alignment explanation
Indices: 7410989--7411016 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7410979 ACTAAATAAT
7410989 TAATAATAAAA
1 TAATAATAAAA
7411000 TAATAATAAAA
1 TAATAATAAAA
7411011 TAATAA
1 TAATAA
7411017 AATATCTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:7411043 original size:20 final size:21
Alignment explanation
Indices: 7410990--7411065 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 21
7410980 CTAAATAATT
*
7410990 AATAATAAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
*
7411009 AATAATAAAATATCTCATTAA
1 AATAATAAAATATCTAATTAA
*
7411030 AATAAT-ATATATCTAATTAAA
1 AATAATAAAATATCTAATT-AA
*
7411051 TAATCATAAAATATC
1 -AATAATAAAATATC
7411066 ATCAACATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
19 12 0.26
20 12 0.26
21 11 0.24
22 5 0.11
23 6 0.13
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:7411331 original size:30 final size:31
Alignment explanation
Indices: 7411263--7411321 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
7411253 CACAGTTAAA
** *
7411263 ATATTTACACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAACCCCTCAAATTTTTC
7411294 ATATTTACACT-TTAACCCCTCAAATTTT
1 ATATTTACACTATTAACCCCTCAAATTTT
7411322 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.31, C:0.22, G:0.02, T:0.46
Consensus pattern (31 bp):
ATATTTACACTATTAACCCCTCAAATTTTTC
Found at i:7413989 original size:29 final size:28
Alignment explanation
Indices: 7413909--7413990 Score: 71
Period size: 28 Copynumber: 2.9 Consensus size: 28
7413899 ATGTCACAAG
7413909 AAAATTAAGTATTTAAA-ATAAAAATATT
1 AAAATTAA-TATTTAAATATAAAAATATT
* * *
7413937 AAATTTTAAT-TTTAATTTTAAAAA-ATAT
1 AAA-ATTAATATTTAAATATAAAAATAT-T
7413965 AAAATATAATATTTAAATATCAAAAA
1 AAAAT-TAATATTTAAATAT-AAAAA
7413991 ATACTTTTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
27 8 0.19
28 18 0.43
29 11 0.26
30 5 0.12
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (28 bp):
AAAATTAATATTTAAATATAAAAATATT
Found at i:7414519 original size:24 final size:25
Alignment explanation
Indices: 7414492--7414544 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
7414482 ATATTTAATA
*
7414492 AAAGAACAT-GTTTATTTTTTATAT
1 AAAGAACATCATTTATTTTTTATAT
* *
7414516 AAAG-ACGTCATTTGTTTTTTATAT
1 AAAGAACATCATTTATTTTTTATAT
7414540 AAAGA
1 AAAGA
7414545 TGTCATATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (25 bp):
AAAGAACATCATTTATTTTTTATAT
Found at i:7416420 original size:9 final size:9
Alignment explanation
Indices: 7416408--7416448 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
7416398 CAGTTAAGTT
*
7416408 ATTAATATA
1 ATTAATTTA
*
7416417 ATTAGTTTA
1 ATTAATTTA
*
7416426 ATTAGTTTA
1 ATTAATTTA
7416435 ATTAATTTA
1 ATTAATTTA
7416444 ATTAA
1 ATTAA
7416449 AAATTATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (9 bp):
ATTAATTTA
Found at i:7419869 original size:21 final size:21
Alignment explanation
Indices: 7419845--7419908 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
7419835 CTCATTTTCT
7419845 AACATGACATTTATTTATTAA
1 AACATGACATTTATTTATTAA
*
7419866 AACA--ATA-TT-TTTA-TAA
1 AACATGACATTTATTTATTAA
7419882 GCAACATGACATTTATTTATTAA
1 --AACATGACATTTATTTATTAA
7419905 AACA
1 AACA
7419909 ATATTTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 14
0.68 0.04 0.28
Matches are distributed among these distances:
16 3 0.09
17 4 0.12
18 6 0.18
19 2 0.06
20 2 0.06
21 10 0.29
22 4 0.12
23 3 0.09
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (21 bp):
AACATGACATTTATTTATTAA
Found at i:7419891 original size:39 final size:39
Alignment explanation
Indices: 7419845--7419926 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
7419835 CTCATTTTCT
7419845 AACATGACATTTATTTATTAAAACAATATTTTTATAAGC
1 AACATGACATTTATTTATTAAAACAATATTTTTATAAGC
7419884 AACATGACATTTATTTATTAAAACAATATTTTTATAAGC
1 AACATGACATTTATTTATTAAAACAATATTTTTATAAGC
7419923 AACA
1 AACA
7419927 AAAGTTAAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (39 bp):
AACATGACATTTATTTATTAAAACAATATTTTTATAAGC
Found at i:7422800 original size:93 final size:92
Alignment explanation
Indices: 7422687--7422855 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 92
7422677 CCCATAAGCA
* *
7422687 AACTCGGAACAACTCAACGAGCTCAGGCTTTCGCATCCATAAGTGAACTCGGACTCAACTCAACA
1 AACTCGGAACAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACA
7422752 AGTTCGGATGCCTAGTTACATCTCACG
66 AGTTCGGATGCCTAGTTACATCTCACG
* *
7422779 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGA-ACAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
* *
7422844 GAGTTTGGATGC
65 AAGTTCGGATGC
7422856 TCAACCATCC
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 8 0.11
93 62 0.89
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (92 bp):
AACTCGGAACAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACA
AGTTCGGATGCCTAGTTACATCTCACG
Found at i:7422844 original size:46 final size:46
Alignment explanation
Indices: 7422678--7422848 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
7422668 TGTAACCCGC
* * * * *
7422678 CCATAAGCAAACTCGGA-ACAACTCAACGAGCTCAGGCTTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
* * * *
7422723 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTCGCAT
*
7422773 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
*
7422816 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
7422849 TGGATGCTCA
Statistics
Matches: 101, Mismatches: 15, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 18 0.18
46 38 0.38
47 25 0.25
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
Found at i:7422871 original size:46 final size:44
Alignment explanation
Indices: 7422728--7422871 Score: 105
Period size: 46 Copynumber: 3.1 Consensus size: 44
7422718 CGCATCCATA
* *
7422728 AGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTAGGATGCC-A---ACCATCT
* * * * *
7422775 CA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTT-AG-GATGC-CAACCATCT
*
7422821 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTAGGATGC-CAACCAT-CT
7422867 AGTGA
1 AGTGA
7422872 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 30 0.40
47 27 0.36
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTAGGATGCCAACCATCT
Found at i:7424674 original size:46 final size:46
Alignment explanation
Indices: 7424614--7424795 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
7424604 TTTGACATGA
* * * *
7424614 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * *
7424660 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATTAGGT
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
7424706 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
7424752 TGCCATAGTATCTTTCAACCATGGTCTTACGCATTTCATATCAG
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
7424796 AGAGCACACT
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 119 0.97
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:7427147 original size:52 final size:53
Alignment explanation
Indices: 7427091--7427199 Score: 123
Period size: 53 Copynumber: 2.1 Consensus size: 53
7427081 ATTACAATGT
* *
7427091 CATTGGTGCAATGT-AATATGTG-CTCCTGTATAAGACCATAGCTGGACTATGG
1 CATTGGTGCAATGTGAATATGTGTCTCC-GTATAAGACCATAGCTGGAATATGA
** * * * *
7427143 CATTGGTGTGATGTGATTATTTGTTTCCGTATAAGACCATATCTGGAATATGA
1 CATTGGTGCAATGTGAATATGTGTCTCCGTATAAGACCATAGCTGGAATATGA
7427196 CATT
1 CATT
7427200 TGTATGATAT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
52 12 0.26
53 32 0.68
54 3 0.06
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.36
Consensus pattern (53 bp):
CATTGGTGCAATGTGAATATGTGTCTCCGTATAAGACCATAGCTGGAATATGA
Found at i:7433337 original size:46 final size:46
Alignment explanation
Indices: 7433200--7433422 Score: 195
Period size: 46 Copynumber: 4.8 Consensus size: 46
7433190 GAAATTGAAA
* * *
7433200 CCGATGCTATGTCCTAGACATGGTCTTACACTAGCTCTCACATATC-CGT-G
1 CCGATGC-ATGTCCCAAACAT-GTCTTACACTGGCT-T-A-A-ATCTCGTAG
* ** * *
7433250 CCGATGCCATGTCCCAGACATGGTCTTACACTAAC--ACATCTCGTAA
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTAAATCTCGTAG
* *
7433296 CCGATACATGTCCCAAACATATCTTACACTGGCTTAAATCTCGTAG
1 CCGATGCATGTCCCAAACATGTCTTACACTGGCTTAAATCTCGTAG
* * *
7433342 CCGATGCATGTTCCAGACATGTCTTACACTGGCTTACATCTCG-AGG
1 CCGATGCATGTCCCAAACATGTCTTACACTGGCTTAAATCTCGTA-G
* *
7433388 CCGATGCATGTCCTAAACATGTCTTACACTAGCTT
1 CCGATGCATGTCCCAAACATGTCTTACACTGGCTT
7433423 TCGTGTAATA
Statistics
Matches: 147, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 13 0.09
45 17 0.12
46 85 0.58
50 31 0.21
51 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAAACATGTCTTACACTGGCTTAAATCTCGTAG
Found at i:7433382 original size:92 final size:92
Alignment explanation
Indices: 7433152--7433422 Score: 255
Period size: 92 Copynumber: 2.9 Consensus size: 92
7433142 TCCATCAAGT
** * * * * *
7433152 CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATTGAAACCGATGCTATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAAC-A-C-ATCTCGAGACCGATAC-ATGTCCCAA
*
7433217 ACATGGTCTTACACTAGCTCTCACATATC-CGT-GC
62 ACAT-ATCTTACACTAGCT-T-A-A-ATCTCGTAGC
7433251 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTA-ACCGATACATGTCCCAAACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCG-AGACCGATACATGTCCCAAACA
*
7433315 TATCTTACACTGGCTTAAATCTCGTAGC
65 TATCTTACACTAGCTTAAATCTCGTAGC
* ** * * *
7433343 CGATG-CATGTTCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCTAAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAAC--ACATCTCGAGACCGATACATGTCCCAAAC
*
7433406 ATGTCTTACACTAGCTT
64 ATATCTTACACTAGCTT
7433423 TCGTGTAATA
Statistics
Matches: 150, Mismatches: 16, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
90 14 0.09
91 18 0.12
92 47 0.31
93 1 0.01
94 12 0.08
95 11 0.07
96 10 0.07
97 2 0.01
98 1 0.01
99 34 0.23
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (92 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCGAGACCGATACATGTCCCAAACAT
ATCTTACACTAGCTTAAATCTCGTAGC
Found at i:7433900 original size:31 final size:31
Alignment explanation
Indices: 7433865--7433945 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
7433855 ATGATACTAG
* *
7433865 AGATATTTTAATATTTTATAAT-TATTTAATT
1 AGATATTTTATTATTTTATAATAT-TTTAATA
**
7433896 AGATA-AATATTATTTTATTAATATTTTAATA
1 AGATATTTTATTATTTTA-TAATATTTTAATA
7433927 AGATATTTTATTATTTTAT
1 AGATATTTTATTATTTTAT
7433946 TAGTATATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
30 9 0.22
31 21 0.51
32 11 0.27
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (31 bp):
AGATATTTTATTATTTTATAATATTTTAATA
Found at i:7435436 original size:50 final size:50
Alignment explanation
Indices: 7435312--7435560 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
7435302 GATAATAACA
* * ** * *
7435312 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7435363 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7435413 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
7435463 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7435518 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7435561 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7435490 original size:100 final size:104
Alignment explanation
Indices: 7435311--7435560 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
7435301 TGATAATAAC
**
7435311 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7435376 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
7435413 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7435476 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
7435518 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7435561 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:7435676 original size:13 final size:13
Alignment explanation
Indices: 7435655--7435686 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7435645 GCTTGGATCA
*
7435655 TCATCAAATAAAT
1 TCATAAAATAAAT
7435668 TCATAAAATAAAT
1 TCATAAAATAAAT
7435681 TCATAA
1 TCATAA
7435687 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7435933 original size:30 final size:30
Alignment explanation
Indices: 7435898--7435955 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7435888 CCTCGACTCT
*
7435898 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7435928 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7435956 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7443030 original size:50 final size:50
Alignment explanation
Indices: 7442906--7443154 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
7442896 GATAATAACA
* * ** * *
7442906 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7442957 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7443007 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
7443057 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7443112 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7443155 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7443084 original size:100 final size:104
Alignment explanation
Indices: 7442905--7443154 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
7442895 TGATAATAAC
**
7442905 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7442970 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
7443007 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7443070 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
7443112 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7443155 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Done.