Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 180 of 325
Found at i:56654934 original size:28 final size:28
Alignment explanation
Indices: 56654902--56655055 Score: 202
Period size: 28 Copynumber: 5.5 Consensus size: 28
56654892 ATAGTAAGTC
*
56654902 CGCACACTTAGTGTTATATAATCGAACT
1 CGCACACTTAGTGTTATATAATCAAACT
56654930 CGCACACTTAGTGTTATATAATC-AACT
1 CGCACACTTAGTGTTATATAATCAAACT
*
56654957 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTG-TTATATAATCAAACT
*
56654986 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
* * ** * *
56655014 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGTTATATAA-TCAAACT
56655043 CGCACACTTAGTG
1 CGCACACTTAGTG
56655056 CCAATCATGA
Statistics
Matches: 114, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
27 17 0.15
28 63 0.55
29 34 0.30
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGTTATATAATCAAACT
Found at i:56654993 original size:56 final size:57
Alignment explanation
Indices: 56654902--56655056 Score: 208
Period size: 57 Copynumber: 2.8 Consensus size: 57
56654892 ATAGTAAGTC
* * *
56654902 CGCACACTTAGTG-TTATATAATCGAACTCGCACACTTAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
56654957 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
56655014 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
56655057 CAATCATGAT
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
55 13 0.15
56 35 0.39
57 38 0.43
58 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (57 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
Found at i:56662995 original size:28 final size:28
Alignment explanation
Indices: 56662963--56663060 Score: 151
Period size: 28 Copynumber: 3.5 Consensus size: 28
56662953 ATAGTAAGTC
56662963 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
*
56662991 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTG-TTATATAATCAAACT
* *
56663020 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
*
56663048 TGCACACTTAGTG
1 CGCACACTTAGTG
56663061 CTATGCAATT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
28 39 0.60
29 26 0.40
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGTTATATAATCAAACT
Found at i:56663038 original size:57 final size:57
Alignment explanation
Indices: 56662964--56663090 Score: 184
Period size: 57 Copynumber: 2.2 Consensus size: 57
56662954 TAGTAAGTCC
* *
56662964 GCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACTT
1 GCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAACCT
* * * *
56663021 GCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAACCT
1 GCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAACCT
56663078 GCACACTTAGTGC
1 GCACACTTAGTGC
56663091 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.31
Consensus pattern (57 bp):
GCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAACCT
Found at i:56663061 original size:28 final size:28
Alignment explanation
Indices: 56662964--56663090 Score: 173
Period size: 29 Copynumber: 4.5 Consensus size: 28
56662954 TAGTAAGTCC
* *
56662964 GCACACTTAGTGTTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTT
*
56662992 GCACACTTAGTGCTTACATAATCAAACTT
1 GCACACTTAGTGC-TATATAATCAAACTT
56663021 GCACACTTAGTGCTATATAATCAAACTT
1 GCACACTTAGTGCTATATAATCAAACTT
** * *
56663049 GCACACTTAGTGCTATGCAATTTAAACCT
1 GCACACTTAGTGCTATATAA-TCAAACTT
56663078 GCACACTTAGTGC
1 GCACACTTAGTGC
56663091 CAATCTCATG
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.31
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTT
Found at i:56664995 original size:39 final size:39
Alignment explanation
Indices: 56664908--56665062 Score: 258
Period size: 39 Copynumber: 4.0 Consensus size: 39
56664898 ATTATATTAT
* *
56664908 CAGCACAAAGCCTGCGGGACTTTAGCTCGGATA-ATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
56664946 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
56664985 CAGCACGAAGCCTGTGGGACTTTAGCCCAGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
56665024 CAGCACGAAGCCTGCGGGACTTTAGCCCGGGTACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
56665063 TAGTGTCTTG
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 31 0.28
39 78 0.72
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:56667949 original size:44 final size:44
Alignment explanation
Indices: 56667866--56667949 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
56667856 CATGTATCGC
* * * *
56667866 ATCCATTATGAACTCAGACCAATTCAACTAGTTCGGATGCTCGT
1 ATCCATAATGAACTCAGACCAATTCAACGAGCTCAGATGCTCGT
* *
56667910 ATCCATAATGAACTCGGACCCACTT-AACGAGCTCAGATGC
1 ATCCATAATGAACTCAGA-CCAATTCAACGAGCTCAGATGC
56667950 CTCATATATA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
44 28 0.85
45 5 0.15
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (44 bp):
ATCCATAATGAACTCAGACCAATTCAACGAGCTCAGATGCTCGT
Found at i:56677987 original size:42 final size:42
Alignment explanation
Indices: 56677897--56677982 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
56677887 TAAGGCTATG
*
56677897 TGTAAG-ACAATATCTGGGATATGGAATCAATATGAGACTTCT
1 TGTAAGAAC-ATATCTAGGATATGGAATCAATATGAGACTTCT
**
56677939 TGTAAGAACATATCTAGGATATGTCATCAATATGAGA-TT-T
1 TGTAAGAACATATCTAGGATATGGAATCAATATGAGACTTCT
56677979 TGTA
1 TGTA
56677983 TAAGACCATA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
40 5 0.12
41 2 0.05
42 31 0.77
43 2 0.05
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (42 bp):
TGTAAGAACATATCTAGGATATGGAATCAATATGAGACTTCT
Found at i:56681473 original size:50 final size:51
Alignment explanation
Indices: 56681398--56681541 Score: 186
Period size: 50 Copynumber: 2.9 Consensus size: 51
56681388 AGGTGGAAGT
* * * *
56681398 AGTGGCAGTATATTTACAAATCAGTGGTGGCATGTCCACAAAATTG-TATC
1 AGTGGCAGTATATCTGCAATTCAGTGGTGGCTTGTCCACAAAATTGTTATC
* *
56681448 AGTGGCAGTATATCTGCAATTCAGTGGTGGCTTGTCCACAAAAGTGTTATT
1 AGTGGCAGTATATCTGCAATTCAGTGGTGGCTTGTCCACAAAATTGTTATC
* *
56681499 AGTGGCAGTTTATCTGCAAATT-AGTGGTGACTTGTCCA-AAAAT
1 AGTGGCAGTATATCTGC-AATTCAGTGGTGGCTTGTCCACAAAAT
56681542 GGTGTTTTGG
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
50 45 0.54
51 34 0.41
52 4 0.05
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (51 bp):
AGTGGCAGTATATCTGCAATTCAGTGGTGGCTTGTCCACAAAATTGTTATC
Found at i:56686361 original size:12 final size:12
Alignment explanation
Indices: 56686344--56686382 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
56686334 AACAACCTCC
*
56686344 ACCCCCTATTGT
1 ACCCCCTGTTGT
*
56686356 ACCCCCTGTTAT
1 ACCCCCTGTTGT
*
56686368 ACCACCTGTTGT
1 ACCCCCTGTTGT
56686380 ACC
1 ACC
56686383 TCTAGTTTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.18, C:0.41, G:0.10, T:0.31
Consensus pattern (12 bp):
ACCCCCTGTTGT
Found at i:56688146 original size:27 final size:27
Alignment explanation
Indices: 56688114--56688564 Score: 153
Period size: 27 Copynumber: 16.7 Consensus size: 27
56688104 TTAGTTTACG
* * *
56688114 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
56688141 GAATTACCGTTCTACCCTCGATTTATG
1 AAATTACCAAAATACCCTCGATTTATA
* *** *
56688168 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
56688195 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
56688222 AAATTACTAAAATACCCCCTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
**
56688250 AAATTACTGAAATACCCTCGACTTGTA-A
1 AAATTACCAAAATACCCTCGA-TT-TATA
* *
56688278 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ****** *
56688305 GAATTATTGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** *
56688332 GAATTACTGTTTTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
**** * *
56688359 AAATTACCGTTTTACCCTCGA-TTGTG
1 AAATTACCAAAATACCCTCGATTTATA
** * ***
56688385 AAATTACTGAAATACCC-CTATAGGGTA
1 AAATTACCAAAATACCCTCGAT-TTATA
* * * *
56688412 GAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
56688439 AAATTACCAAAATACCACTAG-TTTGTG
1 AAATTACCAAAATACC-CTCGATTTATA
* * *
56688466 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
56688493 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
56688520 AAATTA-TAGAAATACCCTTGATTTGTA
1 AAATTACCA-AAATACCCTCGATTTATA
* * *
56688547 GATTTACCAAAACACCCT
1 AAATTACCAAAATACCCT
56688565 TGTAGGATGA
Statistics
Matches: 329, Mismatches: 80, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
25 2 0.01
26 23 0.07
27 254 0.77
28 49 0.15
29 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:56688249 original size:28 final size:28
Alignment explanation
Indices: 56688194--56688294 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 28
56688184 CTCGATTTAC
*
56688194 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
56688221 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
* * *
56688249 AAAATTACTGAAATACCCTC-GACTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
* *
56688276 AAAAATTACCAAAGTACCC
1 -AAAATTACTAAAATACCC
56688295 TTGATTTATA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
27 21 0.32
28 44 0.68
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:56688524 original size:54 final size:54
Alignment explanation
Indices: 56688114--56688563 Score: 237
Period size: 54 Copynumber: 8.3 Consensus size: 54
56688104 TTAGTTTACG
* * * * *** * *
56688114 AAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTCTACCCTCGATTTATG
1 AAATTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTA
* *** * ** *
56688168 GAATTACCATTTTA-CCCTCGATTTACAAAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCCT-GATTTATAAAATTACCGAAATACCCTC-GATTTGTA
* * * *
56688222 AAATTACTAAAATACCCCCTGATTTGTAAAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACCAAAATA-CCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGT-A
* * * ** *** **
56688278 AAATTACCAAAGTACCCTTGATTTATAGAATTATTGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTA
* ***** * *** *
56688332 GAATTACTGTTTTACCCTTGATTTATAAAATTACCGTTTTACCCTCGA-TTGTG
1 AAATTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTA
** *** * * * *
56688385 AAATTACTGAAATACCCCT-ATAGGGTAGAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTGAT-TTATAAAATTACCGAAATACCCTCGA-TTTGTA
* * * *
56688439 AAATTACCAAAATACCACT-AGTTTGTGAAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCCTGA-TTTATAAAATTACCGAAATACCCTCGATTTGTA
* ** *
56688493 AAATTACCAAAATACCCCTGATTTACAAAATTATAGAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTA
* * *
56688547 GATTTACCAAAACACCC
1 AAATTACCAAAATACCC
56688564 TTGTAGGATG
Statistics
Matches: 299, Mismatches: 85, Indels: 24
0.73 0.21 0.06
Matches are distributed among these distances:
52 4 0.01
53 33 0.11
54 184 0.62
55 60 0.20
56 18 0.06
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTA
Found at i:56688545 original size:81 final size:81
Alignment explanation
Indices: 56688371--56688545 Score: 180
Period size: 81 Copynumber: 2.2 Consensus size: 81
56688361 ATTACCGTTT
* * * *
56688371 TACCCTCGA-TTGTGAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAACACCCCTAGTT
1 TACCCTAGATTTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAACACCCCTAGTT
**
56688435 TGTAAAATTACCAAAA
66 TACAAAATTACCAAAA
** *
56688451 TACCACTAG-TTTGTGAAATTACCGAAATACCCTCAAT-TTGTAAAATTACCAAAATACCCCT-G
1 TACC-CTAGATTTGTGAAATTACCGAAATACCC-CAATAGGGTAAAATTACCAAAACACCCCTAG
*
56688513 ATTTACAAAATTA-TAGAAA
64 -TTTACAAAATTACCA-AAA
*
56688532 TACCCTTGATTTGT
1 TACCCTAGATTTGT
56688546 AGATTTACCA
Statistics
Matches: 78, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
80 9 0.12
81 66 0.85
82 3 0.04
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (81 bp):
TACCCTAGATTTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAACACCCCTAGTT
TACAAAATTACCAAAA
Found at i:56688661 original size:27 final size:27
Alignment explanation
Indices: 56688597--56688661 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
56688587 ACCCCTAATA
* *
56688597 GGTAAAAAGACCGTAAAGCCTTTGTAG
1 GGTAAAATGACCGTAAAGCCCTTGTAG
* *
56688624 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCTTGTAG
56688651 GGTAAAATGAC
1 GGTAAAATGAC
56688662 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCTTGTAG
Found at i:56689394 original size:20 final size:20
Alignment explanation
Indices: 56689369--56689452 Score: 134
Period size: 20 Copynumber: 4.2 Consensus size: 20
56689359 GTTATGATAT
*
56689369 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
56689389 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
56689409 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
56689429 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
56689449 ACAT
1 ACAT
56689453 AATGTATTCA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
20 58 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:56689534 original size:26 final size:26
Alignment explanation
Indices: 56689505--56689639 Score: 163
Period size: 26 Copynumber: 5.3 Consensus size: 26
56689495 GAGGAAGTGC
*
56689505 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
56689531 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
56689557 GAAAGGGCTCATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
56689583 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
56689608 AAAAGGGCTT-TG-CCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
56689630 AAAAGAGGCT
1 AAAAG-GGCT
56689640 AGGCTTCCAG
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
22 5 0.05
23 7 0.07
24 5 0.05
25 25 0.26
26 53 0.56
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:56689584 original size:52 final size:50
Alignment explanation
Indices: 56689505--56689639 Score: 186
Period size: 52 Copynumber: 2.7 Consensus size: 50
56689495 GAGGAAGTGC
*
56689505 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGC-TATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
*
56689557 GAAAGGGCTCATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCT-ATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
56689608 AAAAGGGCTTTG-CCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTATGCCCCAGTTTATTGAAAAG-GGCT
56689640 AGGCTTCCAG
Statistics
Matches: 77, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
47 5 0.06
48 9 0.12
49 5 0.06
50 2 0.03
51 24 0.31
52 32 0.42
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:56690491 original size:37 final size:37
Alignment explanation
Indices: 56690441--56690519 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
56690431 TTATTACGAA
* * *
56690441 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
56690478 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
56690515 GTCTT
1 GTCTT
56690520 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:56690861 original size:49 final size:47
Alignment explanation
Indices: 56690638--56691244 Score: 991
Period size: 47 Copynumber: 12.7 Consensus size: 47
56690628 CCCTTCGGGA
* * * * * * *
56690638 CTTATCACATTTATATACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56690685 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56690732 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56690779 CTTATCACATATATACACTATCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56690826 CTTATCACATAGATATACACTTTCAAATTCATCACATCGGCCATTAGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
56690875 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56690922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56690969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56691016 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56691065 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56691114 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56691161 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56691210 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
56691245 AGAATCCTAA
Statistics
Matches: 534, Mismatches: 19, Indels: 14
0.94 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 346 0.65
49 187 0.35
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:56690870 original size:96 final size:94
Alignment explanation
Indices: 56690638--56691244 Score: 991
Period size: 96 Copynumber: 6.4 Consensus size: 94
56690628 CCCTTCGGGA
* * * * * * * * *
56690638 CTTATCACATTTATATACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
56690703 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
56690732 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
56690797 TATCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
56690826 CTTATCACATAGATATACACTTTCAAATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
56690891 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
56690922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
56690987 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
56691016 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
56691081 ACACCTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
56691114 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
56691179 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
56691210 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
56691245 AGAATCCTAA
Statistics
Matches: 487, Mismatches: 19, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
94 185 0.38
95 1 0.00
96 255 0.52
98 46 0.09
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:56693968 original size:31 final size:31
Alignment explanation
Indices: 56693919--56694001 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
56693909 TGCTTACAGT
56693919 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
56693949 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
56693980 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
56694002 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 15 0.30
31 35 0.70
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:56697625 original size:40 final size:40
Alignment explanation
Indices: 56697570--56697711 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
56697560 TATTCGAATG
*
56697570 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
56697610 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
56697650 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
56697690 ATATCC-GACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
56697712 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 13 0.14
40 80 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:56700746 original size:24 final size:24
Alignment explanation
Indices: 56700709--56700789 Score: 128
Period size: 24 Copynumber: 3.4 Consensus size: 24
56700699 CTAGAGGCCT
*
56700709 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
56700734 AGCCCTTTTAATAACCGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
56700758 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
56700781 AGCCCTTTT
1 AGCCCTTTT
56700790 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 22 0.42
24 26 0.50
25 4 0.08
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:56700770 original size:23 final size:23
Alignment explanation
Indices: 56700716--56700788 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
56700706 CCTAGCCTCT
*
56700716 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
56700739 TTTTAATAACCGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
56700763 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
56700786 TTT
1 TTT
56700789 TGCACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 25 0.54
24 21 0.46
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:56700865 original size:20 final size:20
Alignment explanation
Indices: 56700840--56700878 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
56700830 TATGAATACA
56700840 TCATGTGCATAGCATACATG
1 TCATGTGCATAGCATACATG
*
56700860 TCATGTGCATATCATACAT
1 TCATGTGCATAGCATACAT
56700879 ACCATGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (20 bp):
TCATGTGCATAGCATACATG
Found at i:56700884 original size:20 final size:20
Alignment explanation
Indices: 56700841--56700885 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
56700831 ATGAATACAT
**
56700841 CATGTGCATAGCATACATGT
1 CATGTGCATAGCATACATAC
*
56700861 CATGTGCATATCATACATAC
1 CATGTGCATAGCATACATAC
56700881 CATGT
1 CATGT
56700886 TTACTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (20 bp):
CATGTGCATAGCATACATAC
Found at i:56703068 original size:29 final size:29
Alignment explanation
Indices: 56703034--56703107 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
56703024 TAATCAACCG
*
56703034 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
56703063 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
56703092 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
56703108 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:56710440 original size:19 final size:18
Alignment explanation
Indices: 56710403--56710446 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
56710393 ATACATACAG
56710403 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
56710420 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
56710439 TACTAATT
1 TAATAATT
56710447 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:56710988 original size:13 final size:13
Alignment explanation
Indices: 56710966--56710998 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
56710956 AAGGATTTGT
56710966 TTAT-TAAACTAA
1 TTATCTAAACTAA
56710978 TTATCTAAACTAA
1 TTATCTAAACTAA
*
56710991 TTAACTAA
1 TTATCTAA
56710999 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:56714930 original size:20 final size:20
Alignment explanation
Indices: 56714902--56714967 Score: 123
Period size: 20 Copynumber: 3.3 Consensus size: 20
56714892 TTTAAGCCTC
56714902 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
*
56714922 ACACACCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
56714942 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
56714962 ACACGC
1 ACACGC
56714968 TCGTCCCTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.14, C:0.32, G:0.32, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTGGG
Found at i:56716422 original size:43 final size:43
Alignment explanation
Indices: 56716361--56716445 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
56716351 TACATGAATC
* *
56716361 GCATCCACCATGAACTCGGACCTCTCAACGAGCTCAGATGCTT
1 GCATCCACAATGAACTCGGACCTCTCAACGAGCGCAGATGCTT
*
56716404 GCATCCATAATGAACTCGGACCTCTCAACGAGCGCAGATGCT
1 GCATCCACAATGAACTCGGACCTCTCAACGAGCGCAGATGCT
56716446 ACAAACTGCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20
Consensus pattern (43 bp):
GCATCCACAATGAACTCGGACCTCTCAACGAGCGCAGATGCTT
Found at i:56720519 original size:40 final size:40
Alignment explanation
Indices: 56720464--56720601 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
56720454 CGGATGATAA
*
56720464 CCGGGCTAAGTCCCGAAGGCATTTGTGCGACTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAT
*
56720504 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAT
* * *
56720544 CCGGGCTAAGTCCCGAAGGCAGTTGAGC-AAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTA-CTATAT
*
56720584 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
56720602 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 18 0.20
40 73 0.80
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAT
Found at i:56725593 original size:18 final size:17
Alignment explanation
Indices: 56725570--56725612 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
56725560 ATTGATAACA
56725570 TATAAAAGTTTCTAAACT
1 TATAAAAGTTT-TAAACT
* *
56725588 TATAAAAATTTTCAACT
1 TATAAAAGTTTTAAACT
*
56725605 TTTAAAAG
1 TATAAAAG
56725613 GTCACACACT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.40
Consensus pattern (17 bp):
TATAAAAGTTTTAAACT
Found at i:56747191 original size:43 final size:43
Alignment explanation
Indices: 56747130--56747212 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
56747120 CATGTAACAT
*
56747130 ATCCATAATGAACTCGGACCTCTCAACGAGTTCGAATGCTTGC
1 ATCCATAATGAACTCGGACCTCTCAACGAGCTCGAATGCTTGC
* *
56747173 ATCCATAATGAACTCGGACCTCTCAATGAGCTCGGATGCT
1 ATCCATAATGAACTCGGACCTCTCAACGAGCTCGAATGCT
56747213 ACATAACTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (43 bp):
ATCCATAATGAACTCGGACCTCTCAACGAGCTCGAATGCTTGC
Found at i:56755506 original size:45 final size:45
Alignment explanation
Indices: 56755447--56755538 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
56755437 CTATACTTTT
* *
56755447 CATAAATGACAATTTTGTCCCTAGGATCGAAAAATAAAATTCATG
1 CATAAATGAAAATTTTGTCCCTAGGATCGAAAAACAAAATTCATG
*
56755492 CATAAATGAAAATTTTGTCCCTAGGATCGGAAAACAAAATTCATG
1 CATAAATGAAAATTTTGTCCCTAGGATCGAAAAACAAAATTCATG
56755537 CA
1 CA
56755539 ATCTCATCCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.27
Consensus pattern (45 bp):
CATAAATGAAAATTTTGTCCCTAGGATCGAAAAACAAAATTCATG
Found at i:56760030 original size:79 final size:79
Alignment explanation
Indices: 56759794--56760035 Score: 289
Period size: 79 Copynumber: 3.1 Consensus size: 79
56759784 TTGAATGATG
* * * *
56759794 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACCGGGCTAAG-TCCCGAAGGCAT
56759857 TTGTGCGAGTTACTA-A
63 TTGTGCGAGTTACTATA
* * *
56759873 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA-CCGGGCTAAGTCCCGAAGGCATT
56759936 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* *
56759952 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
**
56760017 AACGAG-TAGCTATA
66 TGCGAGTTA-CTATA
56760031 TCCGG
1 TCCGG
56760036 TTAAATTCCG
Statistics
Matches: 140, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
77 2 0.01
78 49 0.35
79 68 0.49
80 21 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:56760038 original size:118 final size:118
Alignment explanation
Indices: 56759794--56760049 Score: 297
Period size: 118 Copynumber: 2.2 Consensus size: 118
56759784 TTGAATGATG
* *
56759794 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
** **
56759859 GTGCGAGTTACTAATTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAAACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
56759912 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
56759975 TTGTGCGAG-TACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTA-AACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
56760031 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
56760050 TACGTGATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
117 6 0.05
118 81 0.69
119 31 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:56760049 original size:39 final size:40
Alignment explanation
Indices: 56759795--56760016 Score: 285
Period size: 40 Copynumber: 5.6 Consensus size: 40
56759785 TGAATGATGT
* * * *
56759795 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
56759835 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
56759874 TCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
56759912 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
56759953 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
56759992 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
56760017 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 25 0.15
39 50 0.31
40 78 0.48
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:56768005 original size:39 final size:40
Alignment explanation
Indices: 56767904--56768146 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
56767894 TTGAATGATG
* * *
56767904 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
56767944 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
56767983 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
56768023 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
56768063 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
56768102 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
56768142 TCCGG
1 TCCGG
56768147 TTAAATTCCG
Statistics
Matches: 181, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 73 0.40
40 100 0.55
41 8 0.04
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:56768040 original size:79 final size:80
Alignment explanation
Indices: 56767904--56768146 Score: 293
Period size: 79 Copynumber: 3.1 Consensus size: 80
56767894 TTGAATGATG
* * * * *
56767904 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
56767967 TTGTGCGAGTTACTA-A
64 TTGTGCGAGTTACTATA
* *
56767983 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATT
56768047 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
* *
56768063 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
**
56768126 TGAACGAG-TAGCTATA
65 TGTGCGAGTTA-CTATA
56768142 TCCGG
1 TCCGG
56768147 TTAAATTCCG
Statistics
Matches: 143, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.02
79 101 0.71
80 39 0.27
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:56768118 original size:119 final size:119
Alignment explanation
Indices: 56767904--56768125 Score: 308
Period size: 119 Copynumber: 1.9 Consensus size: 119
56767894 TTGAATGATG
*
56767904 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
*
56767969 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
* * * * *
56768023 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
56768086 TTGTGCGAG-TACT-ATAACCGGGCTATGTCCCGAAGGCATT
64 TTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
56768126 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
117 2 0.02
118 14 0.15
119 68 0.75
120 7 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
Found at i:56777098 original size:93 final size:93
Alignment explanation
Indices: 56776989--56777159 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
56776979 GCCCATAAGT
* *
56776989 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
56777054 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
56777082 GAACTC-AGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGA-ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
56777146 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
56777160 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:56777156 original size:46 final size:46
Alignment explanation
Indices: 56776981--56777156 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
56776971 TGTAACCCGC
* * *
56776981 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
56777027 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * * *
56777077 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
56777120 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
56777157 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.58
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:56783767 original size:43 final size:43
Alignment explanation
Indices: 56783711--56783885 Score: 124
Period size: 48 Copynumber: 3.9 Consensus size: 43
56783701 CCTGGGATCA
**
56783711 CACATA-CTGATGCCAATAG-CCCA-ACTATGGTCTTACACGATGT
1 CACATATC-GATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAAAT
*
56783754 CTCATATCGATGCC-ATGTCCCAGACATGGTCTTACACGAAAT
1 CACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAAT
* * **
56783796 CACATATCGATGCCAATGCCAAATCCCAGATATGGTCTTACATGGGAT
1 CACATATCGATGCCAATG-----TCCCAGACATGGTCTTACACGAAAT
* *
56783844 CTCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACA
1 CACATATCGATGCC-A----ATGTCCCAGACATGGTCTTACA
56783886 TGGGATCCCA
Statistics
Matches: 107, Mismatches: 11, Indels: 23
0.76 0.08 0.16
Matches are distributed among these distances:
41 1 0.01
42 34 0.32
43 16 0.15
44 1 0.01
48 51 0.48
49 1 0.01
53 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
CACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAAT
Found at i:56783834 original size:48 final size:46
Alignment explanation
Indices: 56783737--56783885 Score: 162
Period size: 48 Copynumber: 3.2 Consensus size: 46
56783727 TAGCCCAACT
**
56783737 ATGGTCTTACACGATGTCTCATATCGATGCC-ATG---TCCCAGAC
1 ATGGTCTTACACGAAATCTCATATCGATGCCAATGCCATCCCAGAC
* *
56783779 ATGGTCTTACACGAAATCACATATCGATGCCAATGCCAAATCCCAGAT
1 ATGGTCTTACACGAAATCTCATATCGATGCCAATGCC--ATCCCAGAC
* ** *
56783827 ATGGTCTTACATGGGATCTCATATCAATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACACGAAATCTCATATCGATGCCAATGCCA--TCCCAGAC
56783875 ATGGTCTTACA
1 ATGGTCTTACA
56783886 TGGGATCCCA
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
42 28 0.31
43 3 0.03
46 1 0.01
48 57 0.64
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (46 bp):
ATGGTCTTACACGAAATCTCATATCGATGCCAATGCCATCCCAGAC
Found at i:56783886 original size:48 final size:48
Alignment explanation
Indices: 56783763--56783898 Score: 191
Period size: 48 Copynumber: 2.8 Consensus size: 48
56783753 TCTCATATCG
* ** *
56783763 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCA
** * *
56783811 ATGCCAAATCCCAGATATGGTCTTACATGGGATCTCATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCA
*
56783859 ATGCCATGTCCCAGACATGGTCTTACATGGGATCCCATAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAT
56783899 AACCCTAATG
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCA
Found at i:56784659 original size:22 final size:21
Alignment explanation
Indices: 56784619--56784659 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
56784609 CACTAGACAC
* *
56784619 AGGGGCACATGCCCGTGTGGG
1 AGGGGCACACGCCCATGTGGG
56784640 AGGGGCAACACGCCCATGTG
1 AGGGGC-ACACGCCCATGTG
56784660 ACCAATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.27, G:0.41, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGG
Found at i:56785553 original size:27 final size:27
Alignment explanation
Indices: 56785523--56785578 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
56785513 GAGAGGAAGT
56785523 AAGCACAAAACTTAGTAAGTTGCATGC
1 AAGCACAAAACTTAGTAAGTTGCATGC
56785550 AAGCACAAAACTTAGTAAGTTGCATGC
1 AAGCACAAAACTTAGTAAGTTGCATGC
56785577 AA
1 AA
56785579 ATAAATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (27 bp):
AAGCACAAAACTTAGTAAGTTGCATGC
Found at i:56786007 original size:99 final size:95
Alignment explanation
Indices: 56785839--56786197 Score: 280
Period size: 93 Copynumber: 3.8 Consensus size: 95
56785829 GAATGCCGAT
* *
56785839 GCCATGTCCCAGATATGGTCTTACACT-G-GCTCATATCTCAAGTCGATGCCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGTCGATGCCATGTCCCAGACAT
* *
56785902 GGTCTTACACTGACTATCATCATTG-AGGCTGAC
66 GGTCTTAAACTGAC-A-CATC-TCGTA-GCTGAC
* **
56785935 GCCATATCCCAGACATGGTCTTACACTAGCTCTCACATATC-CGTGTCGATGCCATGTCCCAGAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATATCTCAAGTCGATGCCATGTCCCAGAC
*
56785999 ATGGTCTTAAACTGACACATCTCGTAGCTGAT
64 ATGGTCTTAAACTGACACATCTCGTAGCTGAC
** * *
56786031 G-CATGTCCCAGACAT-GTCTTACACTAGCT-T-ACGTCTCGAGGCTGATG-CATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGTC-GATGCCATGTCCCAGACA
* * * * * * *
56786091 -CGTCTTATACT-AGCTTTCGTCTC-AATGCCGAT
65 TGGTCTTAAACTGA-C--ACATCTCGTA-GCTGAC
* * * * *
56786123 GCCATGTCCCAAACAT-GTCTTACACTAGCTCTC--GTCTCAATGCCAATGCTATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAA-GTCGATGCCATGTCCCAGACA
*
56786185 TGGTCTTACACTG
65 TGGTCTTAAACTG
56786198 GCTTATAATA
Statistics
Matches: 219, Mismatches: 26, Indels: 36
0.78 0.09 0.13
Matches are distributed among these distances:
89 1 0.00
90 13 0.06
91 18 0.08
92 15 0.07
93 37 0.17
94 29 0.13
95 22 0.10
96 33 0.15
97 6 0.03
98 3 0.01
99 36 0.16
100 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (95 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGTCGATGCCATGTCCCAGACAT
GGTCTTAAACTGACACATCTCGTAGCTGAC
Found at i:56786075 original size:46 final size:48
Alignment explanation
Indices: 56785836--56786202 Score: 294
Period size: 47 Copynumber: 7.8 Consensus size: 48
56785826 GTAGAATGCC
* * * * * *
56785836 GATGCCATGTCCCAGATATGGTCTTACACTGGCTCATATCTCAAGTC-
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCT
*
56785883 GATGCCATGTCCCAGACATGGTCTTACACT-GAC-TATCATCATTGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTTA-CATC-TCGAGGCT
* * * * *
56785932 GACGCCATATCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGTC-
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CGAGGCT
*
56785982 GATGCCATGTCCCAGACATGGTCTTAAACT-GAC--ACATCTCGTA-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCG-AGGCT
*
56786028 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACGTCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCT
* * * * * * *
56786074 GATG-CATGTCCCAGACA-CGTCTTATACTAGCTTTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCT
* * * * *
56786120 GATGCCATGTCCCAAACAT-GTCTTACACTAGCTCT-CGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATCTCGAGGCT
* * *
56786167 AATGCTATGTCCCAGACATGGTCTTACACTGGCTTA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTA
56786203 TAATAACCCA
Statistics
Matches: 267, Mismatches: 31, Indels: 43
0.78 0.09 0.13
Matches are distributed among these distances:
44 10 0.04
45 19 0.07
46 65 0.24
47 87 0.33
48 18 0.07
49 30 0.11
50 30 0.11
51 7 0.03
52 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCT
Found at i:56787995 original size:13 final size:12
Alignment explanation
Indices: 56787979--56788012 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
56787969 GCCCAAATGT
56787979 CAAAATTTTTTAA
1 CAAAATTTTTT-A
56787992 CAAAA-TTTTTA
1 CAAAATTTTTTA
56788003 CAAAATTTTT
1 CAAAATTTTT
56788013 ATAGAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 6 0.30
12 9 0.45
13 5 0.25
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (12 bp):
CAAAATTTTTTA
Found at i:56788005 original size:11 final size:11
Alignment explanation
Indices: 56787979--56788013 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
56787969 GCCCAAATGT
56787979 CAAAATTTTTTAA
1 CAAAA-TTTTT-A
56787992 CAAAATTTTTA
1 CAAAATTTTTA
56788003 CAAAATTTTTA
1 CAAAATTTTTA
56788014 TAGAATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.55
12 5 0.23
13 5 0.23
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (11 bp):
CAAAATTTTTA
Found at i:56790024 original size:43 final size:43
Alignment explanation
Indices: 56789961--56790042 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
56789951 ACATATCATT
* * *
56789961 TCACCGGCATTATGCTTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
56790004 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATA
56790043 TAATACCAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (43 bp):
TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:56790091 original size:38 final size:38
Alignment explanation
Indices: 56790040--56790158 Score: 130
Period size: 38 Copynumber: 3.1 Consensus size: 38
56790030 GAAGGCCCGA
* * *
56790040 ATATAATACCAGCACTAGGCCTACAGGATTTATCCCAG
1 ATATAATACCAGCACGAAGCCTACAGGATTTAACCCAG
* * *
56790078 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTACAGGATTTAACCCAG
** * *
56790116 ATATTTTACCAGCACGAAGCCTACGGGTCTTTAAGCCCAG
1 ATATAATACCAGCACGAAGCCTACAGG-ATTTAA-CCCAG
56790156 ATA
1 ATA
56790159 CACATCAAAT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 56 0.82
39 5 0.07
40 7 0.10
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTACAGGATTTAACCCAG
Found at i:56792019 original size:40 final size:40
Alignment explanation
Indices: 56791962--56792139 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
56791952 CGGATGATAA
56791962 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
56792002 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
56792042 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
56792082 CCAGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
56792122 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
56792140 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 18 0.14
40 110 0.86
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:56799954 original size:40 final size:40
Alignment explanation
Indices: 56799899--56800036 Score: 208
Period size: 40 Copynumber: 3.5 Consensus size: 40
56799889 CGGATGATAA
56799899 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
56799939 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
56799979 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
56800019 CC-GGCTAAATCCTGAAGG
1 CCGGGCTAAGTCCCGAAGG
56800037 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 16 0.18
40 75 0.82
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:56804228 original size:15 final size:16
Alignment explanation
Indices: 56804208--56804247 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
56804198 GTTATTGTCT
56804208 TTTAGTTGAG-ATTGA
1 TTTAGTTGAGAATTGA
56804223 TTTAGTTGAGTAATTGA
1 TTTAGTTGAG-AATTGA
*
56804240 TTGAGTTG
1 TTTAGTTG
56804248 TATGTATGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.45
17 12 0.55
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (16 bp):
TTTAGTTGAGAATTGA
Found at i:56806310 original size:8 final size:8
Alignment explanation
Indices: 56806299--56806324 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
56806289 GATGAGATTG
56806299 AGAATGTA
1 AGAATGTA
56806307 AGAATGTA
1 AGAATGTA
56806315 AGAATGTA
1 AGAATGTA
56806323 AG
1 AG
56806325 TTGAGTAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (8 bp):
AGAATGTA
Found at i:56806682 original size:47 final size:47
Alignment explanation
Indices: 56806627--56806795 Score: 266
Period size: 47 Copynumber: 3.6 Consensus size: 47
56806617 GCATTGGCAC
*
56806627 TAAGACAAGGATACCATGTAAGGCCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
56806674 TAAGACAAGGATATCATGTAAGACCATGTTGGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
56806721 TAAGACAAGGATACCATGTAAGACCATGTTTTGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * * *
56806768 TAATAAAAAGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
56806796 CCAAGACATG
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 112 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:56806839 original size:54 final size:54
Alignment explanation
Indices: 56806780--56806920 Score: 142
Period size: 54 Copynumber: 2.6 Consensus size: 54
56806770 ATAAAAAGAT
*
56806780 ATCATGTAAGACCATGCCAAGACATGGTATTGATAAGTT-GTATAAGAC-AAGGAA
1 ATCATGTAAGACCATGCCAAGACATGG-ATTGATAAGTTACTATAAGACAAAGG-A
** * * * *
56806834 ATCATGTAAGACCATTTCAAGACATAGGATTTATGAGTTACTATAAGGCAAAGGT
1 ATCATGTAAGACCATGCCAAGACAT-GGATTGATAAGTTACTATAAGACAAAGGA
** *
56806889 CCCATGTAAGACCATGCCAAGGCATGGCATTG
1 ATCATGTAAGACCATGCCAAGACATGG-ATTG
56806921 GTGAGTTCAT
Statistics
Matches: 70, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
54 34 0.49
55 32 0.46
56 4 0.06
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (54 bp):
ATCATGTAAGACCATGCCAAGACATGGATTGATAAGTTACTATAAGACAAAGGA
Found at i:56806926 original size:55 final size:54
Alignment explanation
Indices: 56806782--56806969 Score: 159
Period size: 55 Copynumber: 3.5 Consensus size: 54
56806772 AAAAAGATAT
* * * *
56806782 CATGTAAGACCATGCCAAGACATGGTATTGATAAGTTGTATAAGAC-AAGGAAAT
1 CATGTAAGACCATGCCAAGACATGG-ATTGATGAGTTCTATAAGGCAAAGGAAAC
** * **
56806836 CATGTAAGACCATTTCAAGACATAGGATTTATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGACAT-GGATTGATGAGTT-CTATAAGGCAAAGGAAAC
* * *
56806891 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC-AAGGATAC
1 CATGTAAGACCATGCCAAGACATGG-ATTGATGAGTTCTATAAGGCAAAGGAAAC
** * **
56806944 CACATAAAACCATGTGAAGACATGGA
1 CATGTAAGACCATGCCAAGACATGGA
56806970 AATGGTAAGT
Statistics
Matches: 108, Mismatches: 21, Indels: 12
0.77 0.15 0.09
Matches are distributed among these distances:
52 5 0.05
53 28 0.26
54 33 0.31
55 38 0.35
56 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGATTGATGAGTTCTATAAGGCAAAGGAAAC
Found at i:56808474 original size:46 final size:46
Alignment explanation
Indices: 56808416--56808827 Score: 332
Period size: 46 Copynumber: 8.8 Consensus size: 46
56808406 GATTTCTTGT
* *
56808416 GTGCTAGTGTAAGATATGTCTGGGACATGCATCGGCCATATAATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATATAATGA
* *
56808462 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATATAATGA
* * * *
56808508 GTGCCAGTGTAAGACGTGTCTGGGACATGCATCAGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATATAATGA
** *
56808554 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATATA-ATGA
* * * *
56808602 GTGACAATGTAAGACATGTCTGGGACATGCATCGGCCTTGACAATG-
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-ATAATGA
* * * * * * *
56808648 GCAGCCAGTGTAAGACGTGTCTGGGACATGCATTGGCTA-AGAGT-T
1 G-TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATATAATGA
* * * * * **
56808693 GTGCTAGTGTAAGGCATGTCCGGGACATGCATCAGCACGTATATACAA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CATATA-ATGA
* * * * **
56808741 GAGCTAGTATAAGACCATGTCTGGGAAATGGCATCGGCC-T-CGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATATAATGA
*
56808787 GGATAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 -G-T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
56808828 AACTTATCCC
Statistics
Matches: 295, Mismatches: 55, Indels: 29
0.78 0.15 0.08
Matches are distributed among these distances:
44 28 0.09
45 4 0.01
46 112 0.38
47 63 0.21
48 36 0.12
49 45 0.15
50 7 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATATAATGA
Found at i:56808756 original size:187 final size:187
Alignment explanation
Indices: 56808423--56808827 Score: 455
Period size: 187 Copynumber: 2.2 Consensus size: 187
56808413 TGTGTGCTAG
* * *
56808423 TGTAAGATATGTCTGGGACATGCATCGGCCATATAATGAGTGCCAGTGTAAGACATGTCTGGGAC
1 TGTAAGACATGTCTGGGACATGCATCGGCCATACAATGAGAGCCAGTGTAAGACATGTCTGGGAC
* * * **
56808488 ATGCATCGGCCACATTATGAGTGCCAGTGTAAGACGTGTCTGGGACATGCATCAGCCACATTATG
66 ATGCATCGGCCACATGATGAGTGCCAGTGTAAGACATGTCCGGGACATGCATCAGCCACATTACA
* * * ** * *
56808553 AGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGA-GATGAGTGA-CAA
131 AGAGCCAGTATAAGACCATGTCTGGGAAATGGCATCGGCCTAGATGAGGA-TAACCAA
* *
56808609 TGTAAGACATGTCTGGGACATGCATCGGCCTTGACAATG-GCAGCCAGTGTAAGACGTGTCTGGG
1 TGTAAGACATGTCTGGGACATGCATCGGCCAT-ACAATGAG-AGCCAGTGTAAGACATGTCTGGG
* * * * *
56808673 ACATGCATTGGCTA-A-GA-GTTGTGCTAGTGTAAGGCATGTCCGGGACATGCATCAG-CACGTA
64 ACATGCATCGGCCACATGATG-AGTGCCAGTGTAAGACATGTCCGGGACATGCATCAGCCAC--A
* * *
56808734 TATACAAGAGCTAGTATAAGACCATGTCTGGGAAATGGCATCGGCCTCGATGAGGATAACCAG
126 T-TACAAGAGCCAGTATAAGACCATGTCTGGGAAATGGCATCGGCCTAGATGAGGATAACCAA
56808797 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
56808828 AACTTATCCC
Statistics
Matches: 184, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
184 4 0.02
185 32 0.17
186 34 0.18
187 79 0.43
188 13 0.07
189 14 0.08
190 8 0.04
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (187 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCATACAATGAGAGCCAGTGTAAGACATGTCTGGGAC
ATGCATCGGCCACATGATGAGTGCCAGTGTAAGACATGTCCGGGACATGCATCAGCCACATTACA
AGAGCCAGTATAAGACCATGTCTGGGAAATGGCATCGGCCTAGATGAGGATAACCAA
Found at i:56809674 original size:55 final size:55
Alignment explanation
Indices: 56809587--56809718 Score: 165
Period size: 55 Copynumber: 2.4 Consensus size: 55
56809577 GCACTTAAAA
* * **
56809587 TTTTAAAGTCAGTATTGTACACGGCCAGGCCACACGGGCATGTGCCATGTTCGTG
1 TTTTAAAGTCAGTATTGTACACGGCCAAGCCACACGAGCATGTGCCATGGCCGTG
* * * **
56809642 TTTTAAAGTCAGTATTGTACATGGGCAAGCCACACTAGTGTGTGCCATGGCCGTG
1 TTTTAAAGTCAGTATTGTACACGGCCAAGCCACACGAGCATGTGCCATGGCCGTG
* *
56809697 TTTTAAAGTCAGTGTTGCACAC
1 TTTTAAAGTCAGTATTGTACAC
56809719 AGGATAAAGG
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 65 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (55 bp):
TTTTAAAGTCAGTATTGTACACGGCCAAGCCACACGAGCATGTGCCATGGCCGTG
Found at i:56815645 original size:30 final size:30
Alignment explanation
Indices: 56815611--56815668 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
56815601 TTTTCGAGCA
* *
56815611 TAGGGGTAAAATGGTCATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
56815641 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
56815669 ATGTGAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:56816126 original size:47 final size:46
Alignment explanation
Indices: 56816008--56816270 Score: 171
Period size: 46 Copynumber: 5.6 Consensus size: 46
56815998 ATTTCTTGTC
**
56816008 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAG
1 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAG
* * *
56816054 TGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGACGATGA-
1 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ACGATGAG
* ** * * * *
56816100 TAGCTAGTATAAGATGTGTCTGGGACATACATCAGCTA-A-GA-GTTG
1 T-GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATG-AG
* * * * **
56816145 TGCTAGTGTAAGACATGTCCGAGACATGCATCAG-CATGTATATATGAG
1 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA--CA-CGATGAG
* * *
56816193 AGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCA--ATGAGG
1 TGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACACGATGA-G
*
56816240 ATAGCCAGTGTAAGACCATGTCTGGGACATG
1 -T-GCTAGTGTAAGA-CATGTCTGGGACATG
56816271 GCATGGGTAA
Statistics
Matches: 167, Mismatches: 34, Indels: 30
0.72 0.15 0.13
Matches are distributed among these distances:
43 2 0.01
44 29 0.17
45 2 0.01
46 41 0.25
47 33 0.20
48 14 0.08
49 39 0.23
50 6 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAG
Found at i:56816274 original size:49 final size:47
Alignment explanation
Indices: 56816009--56816270 Score: 200
Period size: 49 Copynumber: 5.6 Consensus size: 47
56815999 TTTCTTGTCT
*
56816009 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA-G-T-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCA--ATGAGGATA
* * * * *
56816055 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGACGATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGAGGATA
* ** * *
56816102 GCTAGTATAAGATGTGTCTGGGACATACATCAG-CT-AA-GAGTTG-T-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGAG--GATA
* * * * * * *
56816146 GCTAGTGTAAGACATGTCCGAGACATGCATCAGCATGTATAT-ATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CA-ATGAGGATA
*
56816194 GCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCAATGAGGATA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAATGAGGATA
*
56816243 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
56816271 GCATGGGTAA
Statistics
Matches: 168, Mismatches: 33, Indels: 28
0.73 0.14 0.12
Matches are distributed among these distances:
44 32 0.19
45 4 0.02
46 39 0.23
47 27 0.16
48 16 0.10
49 42 0.25
50 8 0.05
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGAGGATA
Found at i:56817166 original size:55 final size:54
Alignment explanation
Indices: 56817034--56817169 Score: 166
Period size: 55 Copynumber: 2.5 Consensus size: 54
56817024 GCACTTAAAA
* *
56817034 TTTTAAAGTCAGTATTGTACACGGTGAGGCCACATGGGCTTGTCCCATAGCTGTG
1 TTTTAAAGTCAGTATTGTACACGG-GAAGCCACACGGGCTTGTCCCATAGCTGTG
* * *
56817089 TTTTAAAGCCAGTATTGTACACGGGCAAGCCACACGGG-TGTGTGCCATGGCTGTG
1 TTTTAAAGTCAGTATTGTACACGGG-AAGCCACACGGGCT-TGTCCCATAGCTGTG
* * *
56817144 TTTTAAAGTTAGTGTTGCACACGGGA
1 TTTTAAAGTCAGTATTGTACACGGGA
56817170 TAAAGGCACG
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
54 3 0.04
55 67 0.96
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (54 bp):
TTTTAAAGTCAGTATTGTACACGGGAAGCCACACGGGCTTGTCCCATAGCTGTG
Found at i:56822963 original size:47 final size:49
Alignment explanation
Indices: 56822912--56823031 Score: 113
Period size: 47 Copynumber: 2.5 Consensus size: 49
56822902 GAATTGACGG
*
56822912 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGACA-T-TGA
1 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGACACTAAGA
* * ** ** * *
56822959 TTAAGGACT-CTATGTAACACCACATCAAGATGTGGCATTGGCACTAAGA
1 TTAAGGA-TACCATGTAAGACCATGTCAAGACATGGCATCGACACTAAGA
*
56823008 -CAAGGATACCATGTAAGACCATGT
1 TTAAGGATACCATGTAAGACCATGT
56823032 TTGGAACATG
Statistics
Matches: 55, Mismatches: 14, Indels: 7
0.72 0.18 0.09
Matches are distributed among these distances:
47 34 0.62
48 19 0.35
49 2 0.04
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (49 bp):
TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGACACTAAGA
Found at i:56823060 original size:47 final size:47
Alignment explanation
Indices: 56823003--56823166 Score: 271
Period size: 47 Copynumber: 3.6 Consensus size: 47
56822993 GCATTGGCAC
*
56823003 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
56823050 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
56823097 TAAGACAAGGATACCATG---GACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
** *
56823141 TAAGGTAAGGATATCATGTAAGACCA
1 TAAGACAAGGATACCATGTAAGACCA
56823167 AGCCAAGGCA
Statistics
Matches: 110, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
44 41 0.37
47 69 0.63
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:56823271 original size:55 final size:53
Alignment explanation
Indices: 56823141--56823341 Score: 190
Period size: 54 Copynumber: 3.7 Consensus size: 53
56823131 TGGCATTTGG
* * * * * *
56823141 TAAGGTAAGGATATCATGTAAGACCAAGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGGAAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-A
* * * * *
56823195 TAAGGCAAGTAAATCATGTAAGAACATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGGAAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-A
* * * *
56823250 TAAGGAAAAGG-T-CCTATGTAAGACCATGCCATGGCATGGCATTGGTGAGTTCA
1 TAAGG-AAAGGATACC-ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCA
* *
56823303 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGG
1 TAAGGAAAGGATACCATGTAAGACCATGTCAAGACATGG
56823342 AAATGGTAAG
Statistics
Matches: 120, Mismatches: 22, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
52 4 0.03
53 27 0.22
54 47 0.39
55 39 0.32
56 3 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (53 bp):
TAAGGAAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCA
Found at i:56826140 original size:48 final size:48
Alignment explanation
Indices: 56826078--56826178 Score: 148
Period size: 48 Copynumber: 2.1 Consensus size: 48
56826068 CACGAAATAA
* * * *
56826078 CATATCGATGCCAATGCGATATCCCAGATATGGTTTTACATGGGATCT
1 CATATCGATACCAATGCCATATCCCAGACATGGTGTTACATGGGATCT
* *
56826126 CATATTGATACCAATGCCATTTCCCAGACATGGTGTTACATGGGATCT
1 CATATCGATACCAATGCCATATCCCAGACATGGTGTTACATGGGATCT
56826174 CATAT
1 CATAT
56826179 AACCCTAATG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (48 bp):
CATATCGATACCAATGCCATATCCCAGACATGGTGTTACATGGGATCT
Found at i:56832332 original size:47 final size:47
Alignment explanation
Indices: 56832278--56832563 Score: 509
Period size: 47 Copynumber: 6.0 Consensus size: 47
56832268 TATTTGAATA
56832278 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
56832325 AATGTGAAAGTGTATATATCTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATG
*
56832374 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
56832421 AATGTGAAAGTGTATATATGTGATTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATA--TG--TGATAAGGCCTAATGGCCGATGTGATG
56832472 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
56832519 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
56832564 AATAAGGCCT
Statistics
Matches: 231, Mismatches: 2, Indels: 12
0.94 0.01 0.05
Matches are distributed among these distances:
47 136 0.59
49 51 0.22
51 44 0.19
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:56832472 original size:98 final size:95
Alignment explanation
Indices: 56832278--56832563 Score: 520
Period size: 98 Copynumber: 3.0 Consensus size: 95
56832268 TATTTGAATA
56832278 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
56832343 TCTGTGATAAGGCCTAATGGCCGATGTGATG
66 T-TGTGATAAGGCCTAATGGCCGATGTGATG
*
56832374 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
56832439 TGTGATTGATAAGGCCTAATGGCCGATGTGATG
66 T-TG--TGATAAGGCCTAATGGCCGATGTGATG
56832472 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
56832537 -TGTGATAAGGCCTAATGGCCGATGTGA
66 TTGTGATAAGGCCTAATGGCCGATGTGA
56832564 AATAAGGCCT
Statistics
Matches: 185, Mismatches: 3, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
94 25 0.14
96 69 0.37
98 91 0.49
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (95 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TTGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:56832495 original size:25 final size:25
Alignment explanation
Indices: 56832464--56832542 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
56832454 CTAATGGCCG
56832464 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
56832489 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
56832511 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
56832536 ATGTGAT
1 ATGTGAT
56832543 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:56832537 original size:145 final size:142
Alignment explanation
Indices: 56832278--56832563 Score: 511
Period size: 145 Copynumber: 2.0 Consensus size: 142
56832268 TATTTGAATA
56832278 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
56832343 TCTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 -CTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
56832408 AGCCGATGTGATG
130 AGCCGATGTGATG
56832421 AATGTGAAAGTGTATATATGTGATTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 AATGTGAAAGTGTATATA--TG--TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
56832486 TATA-TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
62 TATACTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
56832550 AATGGCCGATGTGA
127 AATAGCCGATGTGA
56832564 AATAAGGCCT
Statistics
Matches: 138, Mismatches: 1, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
143 18 0.13
145 75 0.54
147 45 0.33
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (142 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
CTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATG
Found at i:56832570 original size:24 final size:24
Alignment explanation
Indices: 56832541--56832587 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
56832531 TATATATGTG
56832541 ATAAGGCCTAATGGCCGATGTGAA
1 ATAAGGCCTAATGGCCGATGTGAA
56832565 ATAAGGCCTAATGGCCGATGTGA
1 ATAAGGCCTAATGGCCGATGTGA
56832588 TGAATGTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (24 bp):
ATAAGGCCTAATGGCCGATGTGAA
Found at i:56832571 original size:71 final size:71
Alignment explanation
Indices: 56832494--56832634 Score: 282
Period size: 71 Copynumber: 2.0 Consensus size: 71
56832484 TATATATGTG
56832494 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
56832559 TGTGAA
66 TGTGAA
56832565 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
56832630 TGTGA
66 TGTGA
56832635 TGAATGTGAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (71 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
TGTGAA
Found at i:56832583 original size:118 final size:118
Alignment explanation
Indices: 56832447--56832659 Score: 426
Period size: 118 Copynumber: 1.8 Consensus size: 118
56832437 TATGTGATTG
56832447 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
56832512 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAA
66 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAA
56832565 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
56832630 TGTGATGAATGTGAAAGTGTATATATGTGA
66 TGTGATGAATGTGAAAGTGTATATATGTGA
56832660 CAGGGCCGAG
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 95 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (118 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAA
Found at i:56832618 original size:47 final size:47
Alignment explanation
Indices: 56832565--56832707 Score: 214
Period size: 47 Copynumber: 3.0 Consensus size: 47
56832555 CCGATGTGAA
56832565 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
56832612 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* * * * * * * *
56832659 ACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
56832706 AT
1 AT
56832708 GAGTCCCGAA
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
Found at i:56832691 original size:165 final size:167
Alignment explanation
Indices: 56832396--56832707 Score: 511
Period size: 165 Copynumber: 1.9 Consensus size: 167
56832386 TATATATGTG
56832396 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTGATAAGGCCTAATGG
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA-TGATAAGGCCTAATGG
* * * *
56832461 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
64 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGA
*
56832526 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAA
129 AAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGAA
*
56832565 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-TG-TGATAAGGCCTAATGGCC
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGATGATAAGGCCTAATGGCC
* * *
56832628 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
66 GATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAA
56832693 GTGTATAAATGTGAT
131 GTGTATAAATGTGAT
56832708 GAGTCCCGAA
Statistics
Matches: 134, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
165 90 0.67
167 2 0.01
169 42 0.31
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (167 bp):
ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGATGATAAGGCCTAATGGCC
GATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAA
GTGTATAAATGTGATAAGGCCTAATGGCCGATGTGAA
Found at i:56836594 original size:47 final size:47
Alignment explanation
Indices: 56836522--56836926 Score: 593
Period size: 47 Copynumber: 8.6 Consensus size: 47
56836512 CCCTTCGGGA
* * *
56836522 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
56836569 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
56836616 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
56836663 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
56836710 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
56836757 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
56836804 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
56836853 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
56836900 CTTATCACATATATACACT-TTCACATT
1 CTTATCACATATATACA-TGTTCACATT
56836927 TATTCAAATA
Statistics
Matches: 333, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 288 0.86
49 43 0.13
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:56838450 original size:56 final size:56
Alignment explanation
Indices: 56838383--56838502 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
56838373 TATTAGTTTA
56838383 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
56838439 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
56838495 TTGCCCAT
1 TTGCCCAT
56838503 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:56839108 original size:38 final size:38
Alignment explanation
Indices: 56839044--56839118 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
56839034 AATCCGAGTT
*
56839044 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
56839082 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
56839119 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:56839236 original size:40 final size:40
Alignment explanation
Indices: 56839172--56839452 Score: 429
Period size: 40 Copynumber: 7.0 Consensus size: 40
56839162 AGGTCTCGAC
*
56839172 GATG-ATCCAGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
56839211 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
56839251 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
56839291 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
56839331 GATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
56839371 GATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
56839411 GTTATATCCGGGCTAGGTCTCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
56839451 GA
1 GA
56839453 CGTGTATTCG
Statistics
Matches: 221, Mismatches: 20, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 4 0.02
40 217 0.98
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:56848788 original size:14 final size:14
Alignment explanation
Indices: 56848769--56848799 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
56848759 ATGATTGTTT
*
56848769 TAATCTAAATTTAC
1 TAATCTAAATTAAC
56848783 TAATCTAAATTAAC
1 TAATCTAAATTAAC
56848797 TAA
1 TAA
56848800 GAACATGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:56850665 original size:46 final size:46
Alignment explanation
Indices: 56850615--56850787 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
56850605 TGGTTGAGCA
*
56850615 TCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
56850661 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
56850706 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
56850754 -CCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
56850788 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 56 0.54
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:56852474 original size:40 final size:40
Alignment explanation
Indices: 56852419--56852710 Score: 498
Period size: 40 Copynumber: 7.3 Consensus size: 40
56852409 AAGGGCGTGT
56852419 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
* *
56852459 GCCCGGATACATCACTAGCACAAATGCGT-TTCAGGACTTA
1 GCCCGGATACATCACTAGCACGAATGC-TCTTCGGGACTTA
56852499 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
* *
56852539 GCCCGGATACATCACTAGCACGAATGCTTTTCGAGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
56852579 GCCCGGATACATCACTAGCACGAATGCT-TTACGGGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTT-CGGGACTTA
*
56852619 GCCCGGATACATCACTAGCACGAATGCTCTTTGGGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
56852659 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
*
56852699 GCCAGGATACAT
1 GCCCGGATACAT
56852711 TCAAATAATC
Statistics
Matches: 238, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
39 3 0.01
40 232 0.97
41 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
Found at i:56854466 original size:46 final size:46
Alignment explanation
Indices: 56854413--56854503 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
56854403 TATATATACA
* *
56854413 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* *
56854459 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
56854504 ATATACACTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:56854550 original size:22 final size:22
Alignment explanation
Indices: 56854522--56854643 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
56854512 TTCCACGTTC
56854522 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
56854544 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
56854569 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
56854591 ATCACATATGTG-CATGT-T-CACATTT
1 ATCACAT-TG-GCCAT-TCTGC-C--TT
*
56854616 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
56854638 ATCACA
1 ATCACA
56854644 CATATGTGCA
Statistics
Matches: 77, Mismatches: 5, Indels: 36
0.65 0.04 0.31
Matches are distributed among these distances:
22 26 0.34
23 16 0.21
24 15 0.19
25 20 0.26
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:56854554 original size:49 final size:48
Alignment explanation
Indices: 56854477--56854719 Score: 323
Period size: 47 Copynumber: 5.1 Consensus size: 48
56854467 ACACATTTCG
* * * * * *
56854477 CATTAGCCATTCGGCTTTACCACATATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACA-ATATATGCA-TGTTCACATTCATCA
* *
56854526 CATTGGCCATTCTGCCTTATCAC-ATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACAATATATGCATGTTCACATTCATCA
* *
56854573 CATTGGCCATTCGGCCTTATCAC-ATATGTGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACAATATATGCATGTTCACATTCATCA
*
56854620 CATTGGCCATTCGGCCTTATCACACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACA-ATATATGCATGTTCACATTCATCA
*
56854669 CATTGGCCATTCGGCCTTATCAC-ACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAATATATGCATGTTCACATTCATCA
56854716 CATT
1 CATT
56854720 TGCCTTGGCT
Statistics
Matches: 178, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 112 0.63
49 65 0.37
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (48 bp):
CATTGGCCATTCGGCCTTATCACAATATATGCATGTTCACATTCATCA
Found at i:56854575 original size:47 final size:47
Alignment explanation
Indices: 56854519--56854719 Score: 330
Period size: 47 Copynumber: 4.2 Consensus size: 47
56854509 CACTTCCACG
*
56854519 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
56854566 TTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
56854613 TTTATCACATTGGCCATTCGGCCTTATCACACATATGTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAT--CACATATATGCATGTTCACA
*
56854662 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
56854709 TTCATCACATT
1 TTCATCACATT
56854720 TGCCTTGGCT
Statistics
Matches: 146, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
47 100 0.68
49 46 0.32
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:56854597 original size:96 final size:96
Alignment explanation
Indices: 56854477--56854719 Score: 305
Period size: 96 Copynumber: 2.5 Consensus size: 96
56854467 ACACATTTCG
* * * * *
56854477 CATTAGCCATTCGGCTTTACCACATATATATACACT-TCCACGTTCATCACATTGGCCATTCTGC
1 CATTGGCCATTCGGCCTTATCACA-ATATATACA-TGTCCACATTCATCACATTGGCCATTCGGC
*
56854541 CTTAT-CACATATATGCATGTTCACATTTATCA
64 CTTATACACATATATGCATGTTCACATTCATCA
* * * *
56854573 CATTGGCCATTCGGCCTTATCAC-ATATGTGCATGTTCACATTTATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACAATATATACATGTCCACATTCATCACATTGGCCATTCGGCCT
*
56854637 TATCACACATATGTGCATGTTCACATTCATCA
66 TAT-ACACATATATGCATGTTCACATTCATCA
* * *
56854669 CATTGGCCATTCGGCCTTATCAC-ACATATGCATGTTCACATTCATCACATT
1 CATTGGCCATTCGGCCTTATCACAATATATACATGTCCACATTCATCACATT
56854720 TGCCTTGGCT
Statistics
Matches: 130, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
93 1 0.01
94 36 0.28
96 93 0.72
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (96 bp):
CATTGGCCATTCGGCCTTATCACAATATATACATGTCCACATTCATCACATTGGCCATTCGGCCT
TATACACATATATGCATGTTCACATTCATCA
Found at i:56859469 original size:220 final size:221
Alignment explanation
Indices: 56859062--56859493 Score: 661
Period size: 220 Copynumber: 2.0 Consensus size: 221
56859052 GAAAAACGGT
*
56859062 TCTTTGAGATTGTGTATAGATTACAGACAGTTGAATAAAGTCACAATTAAAAATAAGTATCCTTT
1 TCTTTGAGATTGTGTATAGATTACAGACAGTTGAATAAAGTCACAATAAAAAATAAGTATCCTTT
* *
56859127 TCCACGTATTGACAATTTGTTTGATCAATTGAAAAGTGCCACAGTGTTCTCGAAGATAGATCTCA
66 GCCACGTATCGACAATTTGTTTGATCAATTGAAAAGTGCCACAGTGTTCTCGAAGATAGATCTCA
* * * * *
56859192 ACTTTGGGTATTATCAATTGAAGGTTAAAAACTATGATGTGTCAAAGACTACTTTCAGTACTTGT
131 ACTCTAGGTATTATCAATTGAAGGTTAAAAACTATGATATGTCAAAGACTACTTTCAGAACTCGT
*
56859257 TATGGTCATTATGAGTTAAAGATGGC
196 TATGGTCATTATAAGTTAAAGATGGC
*
56859283 TCTTTGAGATTGTGTATAGATTACATACAGTTGAATAAAGTCACAATAAAAAATAAGTATCC-TT
1 TCTTTGAGATTGTGTATAGATTACAGACAGTTGAATAAAGTCACAATAAAAAATAAGTATCCTTT
*** * *
56859347 GCCACGTATCGGTGATTTGTTTGATCAATTGAAAGGTGTCACAGTGTTCTCGAAGATAGATCTCA
66 GCCACGTATCGACAATTTGTTTGATCAATTGAAAAGTGCCACAGTGTTCTCGAAGATAGATCTCA
* * * * *
56859412 GA-TCTAGGTATTATCAATTGAAGGTTAAAGATTGTGATATGTCTAAGACTGCTTTCAGAACTCG
131 -ACTCTAGGTATTATCAATTGAAGGTTAAAAACTATGATATGTCAAAGACTACTTTCAGAACTCG
56859476 TTATGGTCATTATAAGTT
195 TTATGGTCATTATAAGTT
56859494 TCTAGTAATG
Statistics
Matches: 190, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
220 129 0.68
221 61 0.32
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (221 bp):
TCTTTGAGATTGTGTATAGATTACAGACAGTTGAATAAAGTCACAATAAAAAATAAGTATCCTTT
GCCACGTATCGACAATTTGTTTGATCAATTGAAAAGTGCCACAGTGTTCTCGAAGATAGATCTCA
ACTCTAGGTATTATCAATTGAAGGTTAAAAACTATGATATGTCAAAGACTACTTTCAGAACTCGT
TATGGTCATTATAAGTTAAAGATGGC
Found at i:56864478 original size:43 final size:42
Alignment explanation
Indices: 56864347--56864499 Score: 209
Period size: 42 Copynumber: 3.6 Consensus size: 42
56864337 TAGGGTTACG
*
56864347 GAGATTACGTGTAAGACCATATCTGGGATATGGCACCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
* *
56864389 GAGACTT-CGTGTAAAACCATATCTGAGATATGGCATCGATAT
1 GAGA-TTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
* * * *
56864431 GAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC
1 GAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAT
*
56864474 GAGATTACATGTAAGACCATATCTGG
1 GAGATTACGTGTAAGACCATATCTGG
56864500 AGATTCTCGA
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
41 2 0.02
42 59 0.61
43 36 0.37
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
Found at i:56864542 original size:34 final size:34
Alignment explanation
Indices: 56864499--56864564 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
56864489 ACCATATCTG
56864499 GAGATTCTCGAGTATCCTTTAGTATTCCAAGTAT
1 GAGATTCTCGAGTATCCTTTAGTATTCCAAGTAT
*
56864533 GAGATTCTCGAGTATCCTTTAGTATTTCAAGT
1 GAGATTCTCGAGTATCCTTTAGTATTCCAAGT
56864565 GGTTCAACGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (34 bp):
GAGATTCTCGAGTATCCTTTAGTATTCCAAGTAT
Found at i:56872972 original size:42 final size:43
Alignment explanation
Indices: 56872893--56872998 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 43
56872883 AAGAAACACC
**
56872893 GCTATAGAACATAATTTTTAACGGCGCTTTCCCCACAAATGTT
1 GCTATAGAACATAACCTTTAACGGCGCTTTCCCCACAAATGTT
* * * * **
56872936 GCTATAGAACA-AACCTTTAGCGGCGCTTTTCTCACAAACGCC
1 GCTATAGAACATAACCTTTAACGGCGCTTTCCCCACAAATGTT
* *
56872978 GCTAAAGAACATGACCTTTAA
1 GCTATAGAACATAACCTTTAA
56872999 AAAAATTATT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 33 0.65
43 18 0.35
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
GCTATAGAACATAACCTTTAACGGCGCTTTCCCCACAAATGTT
Found at i:56877688 original size:14 final size:14
Alignment explanation
Indices: 56877671--56877715 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
56877661 AAAAAACTAC
*
56877671 AAACTCTAAACCCT
1 AAACTCTAAACCCA
* * *
56877685 AAACCCTAAATCAA
1 AAACTCTAAACCCA
56877699 AAACTCTAAACCCA
1 AAACTCTAAACCCA
56877713 AAA
1 AAA
56877716 TAATAAATAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.53, C:0.31, G:0.00, T:0.16
Consensus pattern (14 bp):
AAACTCTAAACCCA
Found at i:56878385 original size:21 final size:21
Alignment explanation
Indices: 56878336--56878423 Score: 70
Period size: 21 Copynumber: 4.2 Consensus size: 21
56878326 ATTTACCCTC
56878336 AAACCCTAAACCATAAACCAT
1 AAACCCTAAACCATAAACCAT
* * *
56878357 AAATCCTAGACTATAAACC-T
1 AAACCCTAAACCATAAACCAT
** * *
56878377 AAAACCCTAAATTATAAGCCCT
1 -AAACCCTAAACCATAAACCAT
** *
56878399 AAATACTAAACCATAACCCAT
1 AAACCCTAAACCATAAACCAT
56878420 AAAC
1 AAAC
56878424 TAAATTGATT
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 49 0.96
22 1 0.02
ACGTcount: A:0.50, C:0.28, G:0.02, T:0.19
Consensus pattern (21 bp):
AAACCCTAAACCATAAACCAT
Found at i:56878734 original size:40 final size:40
Alignment explanation
Indices: 56878690--56878854 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
56878680 TTTACGGCAT
* * * * *
56878690 TTTTTCAGAAAGCGACGCTAATGGTTGACCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
* *
56878730 TTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
* * * *
56878770 TTTTTCAAAAAGTGCCGTTGATGCTCGATCTATAGCAGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
* *
56878810 TTTTTCAAAAAGCGCTGCTAATGCTCGACCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
56878850 TTTTT
1 TTTTT
56878855 GGTCCTAGCG
Statistics
Matches: 108, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
Found at i:56879368 original size:22 final size:24
Alignment explanation
Indices: 56879328--56879376 Score: 84
Period size: 22 Copynumber: 2.1 Consensus size: 24
56879318 AGATAGTAGT
56879328 ATGCGAACCTCATATATATGTTAC
1 ATGCGAACCTCATATATATGTTAC
56879352 ATGCGAACC-C-TATATATGTTAC
1 ATGCGAACCTCATATATATGTTAC
56879374 ATG
1 ATG
56879377 TAAAACTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 15 0.60
23 1 0.04
24 9 0.36
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (24 bp):
ATGCGAACCTCATATATATGTTAC
Found at i:56879392 original size:23 final size:22
Alignment explanation
Indices: 56879340--56879392 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
56879330 GCGAACCTCA
**
56879340 TATATATGTTACATGCGAACCC
1 TATATATGTTACATGAAAACCC
**
56879362 TATATATGTTACATGTAAAACTG
1 TATATATGTTACATG-AAAACCC
56879385 TATATATG
1 TATATATG
56879393 CGAACCTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (22 bp):
TATATATGTTACATGAAAACCC
Found at i:56879413 original size:37 final size:37
Alignment explanation
Indices: 56879352--56879427 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 37
56879342 TATATGTTAC
** *
56879352 ATGCGAACCCTATATATGTTACATGTAAAACTGTATAT
1 ATGCGAACCCTATATACATCACATGTAAAACT-TATAT
* *
56879390 ATGCGAA-CCTATATACATCACATGTGAACCTTATAT
1 ATGCGAACCCTATATACATCACATGTAAAACTTATAT
56879426 AT
1 AT
56879428 ATGTTAAATG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
36 7 0.21
37 19 0.58
38 7 0.21
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (37 bp):
ATGCGAACCCTATATACATCACATGTAAAACTTATAT
Found at i:56881652 original size:64 final size:64
Alignment explanation
Indices: 56881578--56881721 Score: 252
Period size: 64 Copynumber: 2.2 Consensus size: 64
56881568 AATGACCAAC
* * *
56881578 TGTATGAAAAATATTTAAAATTATATTTTTAGTATTTTATGTGTAAAACTATTAGTAAACAATTA
1 TGTAT-AAAAATATTTAAAATTATATTTTTAATATTTTATGTCTAAAACTATAAGTAAACAATTA
56881643 TGTATAAAAATATTTAAAATTATATTTTTAATATTTTATGTCTAAAACTATAAGTAAACAATTA
1 TGTATAAAAATATTTAAAATTATATTTTTAATATTTTATGTCTAAAACTATAAGTAAACAATTA
56881707 TGTATAAAAATATTT
1 TGTATAAAAATATTT
56881722 TTTAAATGCA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
64 71 0.93
65 5 0.07
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.44
Consensus pattern (64 bp):
TGTATAAAAATATTTAAAATTATATTTTTAATATTTTATGTCTAAAACTATAAGTAAACAATTA
Found at i:56883915 original size:18 final size:17
Alignment explanation
Indices: 56883892--56883977 Score: 88
Period size: 18 Copynumber: 4.9 Consensus size: 17
56883882 AATAATAATG
56883892 TGTATAATAAAATTAAAA
1 TGTATAA-AAAATTAAAA
56883910 TGTATAAAAAA-TAAAA
1 TGTATAAAAAATTAAAA
*
56883926 -ATA-AAAGAAATAATAAAA
1 TGTATAAA-AAAT--TAAAA
56883944 TGTATAATAAAATTAAAA
1 TGTATAA-AAAATTAAAA
56883962 TGTATAAAAATATTAA
1 TGTATAAAAA-ATTAA
56883978 GATAAAACTT
Statistics
Matches: 58, Mismatches: 2, Indels: 16
0.76 0.03 0.21
Matches are distributed among these distances:
14 3 0.05
15 5 0.09
16 5 0.09
17 7 0.12
18 29 0.50
19 2 0.03
20 6 0.10
21 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
TGTATAAAAAATTAAAA
Found at i:56884462 original size:22 final size:23
Alignment explanation
Indices: 56884430--56884481 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
56884420 AAACCACTTA
* *
56884430 AGACAT-A-AACATCTAACATCT
1 AGACATCACAACACCTAAAATCT
56884451 A-ACATCACAACACCTAAAATCT
1 AGACATCACAACACCTAAAATCT
56884473 AGACATCAC
1 AGACATCAC
56884482 CAAATCACGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 4 0.15
21 2 0.08
22 13 0.50
23 7 0.27
ACGTcount: A:0.48, C:0.29, G:0.04, T:0.19
Consensus pattern (23 bp):
AGACATCACAACACCTAAAATCT
Found at i:56891750 original size:27 final size:27
Alignment explanation
Indices: 56891719--56891896 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
56891709 TAAATTGTAC
56891719 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
56891746 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
56891772 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
56891800 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
56891828 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
56891855 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
56891882 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
56891897 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:56891833 original size:82 final size:81
Alignment explanation
Indices: 56891720--56891875 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
56891710 AAATTGTACA
* *
56891720 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
56891784 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
56891801 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
56891866 TGCGAGTTGA
65 TGCGAATTGA
56891876 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:56891887 original size:82 final size:81
Alignment explanation
Indices: 56891716--56891896 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
56891706 GATTAAATTG
* *
56891716 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
56891781 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
56891797 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
56891861 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
56891879 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
56891897 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:56898734 original size:40 final size:40
Alignment explanation
Indices: 56898665--56898845 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
56898655 ATTCGGATTG
*
56898665 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
56898704 ATAACCGGGCCAAGTCCCGAAGGTAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
56898744 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* * *
56898784 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
56898824 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
56898846 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 29 0.23
40 99 0.77
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:56904462 original size:28 final size:28
Alignment explanation
Indices: 56904390--56904480 Score: 96
Period size: 28 Copynumber: 3.3 Consensus size: 28
56904380 GGAGGAAGCA
*
56904390 TTCTGGTGGATCTGCCACAAATATCTGA-
1 TTCTGGTGGCTCTGCCACAAATATCT-AT
* *
56904418 -TCTGGTAGCTCTACCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
* * *
56904445 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
*
56904473 ATCTGGTG
1 TTCTGGTG
56904481 ACTGTCACAA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.02
27 22 0.42
28 29 0.56
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTAT
Found at i:56910314 original size:37 final size:37
Alignment explanation
Indices: 56910261--56910400 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
56910251 CGAATAGTCC
* *
56910261 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
56910298 CCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
56910335 CCACACGTAGTCATCGGGTCTTACCCGGACATAATTT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
56910372 CCACACGAAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
56910401 ATATATTTCC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:56910599 original size:48 final size:48
Alignment explanation
Indices: 56910541--56911349 Score: 1402
Period size: 48 Copynumber: 16.9 Consensus size: 48
56910531 ATATACACAC
* *
56910541 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACGACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56910589 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56910637 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56910685 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56910733 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
56910781 ATCTCATATATATCTCACACTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56910829 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCCCATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56910877 CTCTCATGCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56910925 CTCTCATGCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
56910973 CTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
56911021 ATCTCATACATATTTCACACTAGCCATTCCGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56911069 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56911117 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
56911165 ATCTGATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56911213 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56911261 ATCTCATATATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56911309 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
56911350 CACATATATA
Statistics
Matches: 736, Mismatches: 25, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 736 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:56914906 original size:79 final size:79
Alignment explanation
Indices: 56914769--56914960 Score: 321
Period size: 79 Copynumber: 2.4 Consensus size: 79
56914759 GAATGCACAT
* * * *
56914769 CACCAGCATGATTTCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGAC
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCC-GATATAACACCAGCACGAATGCTCTTCGGGAC
*
56914834 TTAGCCCGGATATAA
65 TTAGCCCAGATATAA
56914849 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGATATAACACCAGCACGAATGCTCTTCGGGACT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGATATAACACCAGCACGAATGCTCTTCGGGACT
*
56914914 TAGCCCAGATATAT
66 TAGCCCAGATATAA
56914928 CACCAGCACGAATGCTCTTCGGGACTTAGCCCG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCG
56914961 GCTATATAAC
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 78 0.74
80 28 0.26
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.21
Consensus pattern (79 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGATATAACACCAGCACGAATGCTCTTCGGGACT
TAGCCCAGATATAA
Found at i:56914967 original size:40 final size:40
Alignment explanation
Indices: 56914769--56914966 Score: 326
Period size: 40 Copynumber: 5.0 Consensus size: 40
56914759 GAATGCACAT
* * * *
56914769 CACCAGCATGATTTCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
56914809 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
56914849 CACCAGCACGAATGCTCTTCGGGACTTAGCCC-GATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
56914888 CACCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
56914928 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
56914967 TAACTCTCAA
Statistics
Matches: 150, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
39 39 0.26
40 111 0.74
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:56916392 original size:37 final size:37
Alignment explanation
Indices: 56916242--56916381 Score: 217
Period size: 37 Copynumber: 3.8 Consensus size: 37
56916232 CGAATAGTCC
* * * *
56916242 CCACACGTAGTTATCAGGTCTTACCTGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
56916279 CCACACGTAGTCATCGGGTCTCACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
56916316 CCACACGTAGTCATCGGGTCTTACCCGGACATAATTT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
56916353 CCACACGAAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
56916382 ATATATTTCC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:56916583 original size:48 final size:48
Alignment explanation
Indices: 56916522--56917228 Score: 1260
Period size: 48 Copynumber: 14.8 Consensus size: 48
56916512 ATATACACAC
* *
56916522 ATCTCCTACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
56916570 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56916618 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
56916666 A--TCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56916712 ATCTCAT--ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56916758 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56916806 ATCTCATGCATATTTCACACTAGCCATTCGGCTTTATCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56916854 CTCTCATGCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56916902 ATCTCATGCATATTTCACACTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
56916950 ATCTTATCCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
56916998 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56917046 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56917094 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
56917142 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
56917190 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA
56917229 TACACATATA
Statistics
Matches: 636, Mismatches: 19, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
46 91 0.14
48 545 0.86
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:56922472 original size:28 final size:28
Alignment explanation
Indices: 56922429--56922516 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 28
56922419 GGAGGAAGCA
56922429 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
56922457 TTCTGGTGGC-CTTGCCACAATTATCTGT
1 TTCTGGTGGCTC-TGCCACAAATATCTGT
* * *
56922485 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
56922511 TTCTGG
1 TTCTGG
56922517 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
26 5 0.10
27 8 0.15
28 38 0.73
29 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:56924802 original size:28 final size:28
Alignment explanation
Indices: 56924760--56924825 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
56924750 ATAGTGCTTG
* * * *
56924760 CAGTAACAGTTTGGGCCTGAGCCCTATT
1 CAGTATCAGTGTGGGCCTAAGCCCGATT
56924788 CAGTATCAGTGTGGGCCTAAGCCCGATT
1 CAGTATCAGTGTGGGCCTAAGCCCGATT
*
56924816 TAGTATCAGT
1 CAGTATCAGT
56924826 ATAGTGCAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (28 bp):
CAGTATCAGTGTGGGCCTAAGCCCGATT
Done.