Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 181 of 325
Found at i:56927925 original size:40 final size:41
Alignment explanation
Indices: 56927837--56927933 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
56927827 TATGTCGGTA
*
56927837 TCGCACACTTAGTGCC-TTATATAGCCGAAGCTATGCCAAC
1 TCGCACACTTAGTGCCATTATATAGCCGAAGCTATGCAAAC
* * **
56927877 TCGAACACTTAGTGCCATT-TGTAGCCGAAGCTATATTAAAC
1 TCGCACACTTAGTGCCATTATATAGCCGAAGCTAT-GCAAAC
56927918 -CGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
56927934 AGCATAGACG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
40 44 0.90
41 5 0.10
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATTATATAGCCGAAGCTATGCAAAC
Found at i:56930229 original size:46 final size:46
Alignment explanation
Indices: 56930176--56930304 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
56930166 TATTTGGGCA
*
56930176 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
56930222 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
56930268 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
56930305 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:56943594 original size:14 final size:14
Alignment explanation
Indices: 56943575--56943602 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
56943565 TAAGCAATTA
56943575 AGACTTAGATTACT
1 AGACTTAGATTACT
56943589 AGACTTAGATTACT
1 AGACTTAGATTACT
56943603 TTTTATTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
AGACTTAGATTACT
Found at i:56947018 original size:41 final size:41
Alignment explanation
Indices: 56946882--56947167 Score: 372
Period size: 40 Copynumber: 7.1 Consensus size: 41
56946872 CGTTTGGATA
*
56946882 AAAAAACGCCGATATAGATCGAGCATTAGCGGCGCTTTTTG
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * *
56946923 -AAAAACACCGCTATAGATCGAGAATTAACGACGC-TTTT-
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
56946961 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
*
56947002 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCACTTTTT-
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * *
56947042 AAAAAACGTCGCTATAAATCAAGCATTAGCAGCGCTTTTTG
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * *
56947083 AAAAAACACCACTATAGATCGAGC-TATAGCGGCACTTATT-
1 AAAAAACGCCGCTATAGATCGAGCAT-TAGCGGCGCTTTTTG
56947123 AAAAAA-GCCGCTATAGATCGAGCATTA-CTGGCGCTTTTTG
1 AAAAAACGCCGCTATAGATCGAGCATTAGC-GGCGCTTTTTG
56947163 AAAAA
1 AAAAA
56947168 TGCCACTATA
Statistics
Matches: 210, Mismatches: 27, Indels: 17
0.83 0.11 0.07
Matches are distributed among these distances:
38 1 0.00
39 59 0.28
40 81 0.39
41 69 0.33
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (41 bp):
AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:56947078 original size:81 final size:81
Alignment explanation
Indices: 56946882--56947167 Score: 411
Period size: 81 Copynumber: 3.6 Consensus size: 81
56946872 CGTTTGGATA
* *
56946882 AAAAAACGCCGATATAGATCGAGCATTAGCGGCGCTTTTTG-AAAAACACCGCTATAGATCGAGA
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAACACCGCTATAGATCGAGC
* * *
56946946 ATTAACGACGC-TTTT
66 ATTAGCGGCACTTTTT
*
56946961 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAACGCCGCTATAGATCGAGC
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAACACCGCTATAGATCGAGC
56947026 ATTAGCGGCACTTTTT
66 ATTAGCGGCACTTTTT
* * * * *
56947042 AAAAAACGTCGCTATAAATCAAGCATTAGCAGCGCTTTTTGAAAAAACACCACTATAGATCGAGC
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAACACCGCTATAGATCGAGC
*
56947107 -TATAGCGGCACTTATT
66 AT-TAGCGGCACTTTTT
56947123 AAAAAA-GCCGCTATAGATCGAGCATTA-CTGGCGCTTTTTGAAAAA
1 AAAAAACGCCGCTATAGATCGAGCATTAGC-GGCGCTTTTTGAAAAA
56947168 TGCCACTATA
Statistics
Matches: 186, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
79 41 0.22
80 63 0.34
81 82 0.44
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (81 bp):
AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAACACCGCTATAGATCGAGC
ATTAGCGGCACTTTTT
Found at i:56947177 original size:120 final size:120
Alignment explanation
Indices: 56946882--56947209 Score: 396
Period size: 120 Copynumber: 2.7 Consensus size: 120
56946872 CGTTTGGATA
* * * *
56946882 AAAAAACGCCGATATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGAGAA
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAAGCA
* * * * *
56946947 TTAACGACGCTTTTAAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
66 TTAGCGACGCTTTTAAAAAACACCACTATAGATCGAGCATTAGCGGCACTTATTG
* * * *
56947002 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCACTTTTTAAAAAACGTCGCTATAAATCAAGCA
1 AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAAGCA
56947067 TTAGC-AGCGCTTTTTGAAAAAACACCACTATAGATCGAGC-TATAGCGGCACTTATT-
66 TTAGCGA-CGC-TTTT-AAAAAACACCACTATAGATCGAGCAT-TAGCGGCACTTATTG
* * * *
56947123 AAAAAA-GCCGCTATAGATCGAGCATTA-CTGGCGCTTTTTGAAAAATGCCACTATAGGTCAACC
1 AAAAAACGCCGCTATAGATCGAGCATTAGC-GGCGCTTTTTGAAAAACGCCGCTATAGATCAAGC
**
56947186 ATTAGCGTTGCCTTTTAAAAAACA
65 ATTAGCGACG-CTTTTAAAAAACA
56947210 TCGCAAAAAA
Statistics
Matches: 178, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
119 10 0.06
120 122 0.69
121 12 0.07
122 34 0.19
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (120 bp):
AAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAAGCA
TTAGCGACGCTTTTAAAAAACACCACTATAGATCGAGCATTAGCGGCACTTATTG
Found at i:56947303 original size:40 final size:41
Alignment explanation
Indices: 56947248--56947350 Score: 156
Period size: 40 Copynumber: 2.6 Consensus size: 41
56947238 AGCTTTAGTG
56947248 GCATTAGCGGCGCTTTTTGAAAAATGCCGCCATAGATCG-C
1 GCATTAGCGGCGCTTTTTGAAAAATGCCGCCATAGATCGAC
* * *
56947288 GCATTAGTGGCGCTTTTTGAAAAATGCCGCTATAGGTCGAC
1 GCATTAGCGGCGCTTTTTGAAAAATGCCGCCATAGATCGAC
*
56947329 -CAATAGCGGCGCTTTTTGAAAA
1 GCATTAGCGGCGCTTTTTGAAAA
56947351 CGCCGCAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 56 0.98
41 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (41 bp):
GCATTAGCGGCGCTTTTTGAAAAATGCCGCCATAGATCGAC
Found at i:56947380 original size:144 final size:141
Alignment explanation
Indices: 56947109--56947396 Score: 357
Period size: 144 Copynumber: 2.0 Consensus size: 141
56947099 GATCGAGCTA
*
56947109 TAGCGGCACTTATTAAAAAAGCCGCTATAGATCGAGCATTACTGGCGCTTTTTGAAAAATGCCAC
1 TAGCGGCACTTATTAAAAAAGCCGCCATAGATCGAGCATTACTGGCGCTTTTTGAAAAATGCCAC
* *
56947174 TATAGGTCAACCATTAGCGTTGCCTTTTAAAAAACATCGCAAAAAAAATTTAACCACAATGTTGA
66 TATAGGTCAACCAATAGCG-TGCCTTTTAAAAAACACCGC-AAAAAAATTTAACCACAATGTTGA
56947239 GCTTTAGTGGCAT
129 GCTTTAGTGGCAT
* * * * * *
56947252 TAGCGGCGCTTTTTGAAAAATGCCGCCATAGATCGCGCATTAGTGGCGCTTTTTGAAAAATGCCG
1 TAGCGGCACTTATT-AAAAAAGCCGCCATAGATCGAGCATTACTGGCGCTTTTTGAAAAATGCCA
* ** * *
56947317 CTATAGGTCGACCAATAGCG-GCGCTTTTTGAAAACGCCGC-AAAAAA-TTAAGCACACTTTATG
65 CTATAGGTCAACCAATAGCGTGC-CTTTTAAAAAACACCGCAAAAAAATTTAA-C-CAC--AATG
56947379 TTGAGCTTTAGTGGCAT
125 TTGAGCTTTAGTGGCAT
56947396 T
1 T
56947397 TCGCTATAGA
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
140 4 0.03
141 7 0.06
142 5 0.04
143 25 0.20
144 84 0.67
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (141 bp):
TAGCGGCACTTATTAAAAAAGCCGCCATAGATCGAGCATTACTGGCGCTTTTTGAAAAATGCCAC
TATAGGTCAACCAATAGCGTGCCTTTTAAAAAACACCGCAAAAAAATTTAACCACAATGTTGAGC
TTTAGTGGCAT
Found at i:56947445 original size:40 final size:40
Alignment explanation
Indices: 56947400--56947480 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
56947390 TGGCATTTCG
* *
56947400 CTATAGATCAAGCATTTA-TGGCGCTTTTTGAAAAACGCCA
1 CTATAGATCAA-CAGTTAGCGGCGCTTTTTGAAAAACGCCA
* * *
56947440 CTATAGGTCAACCGTTAGCGGCTCTTTTTGAAAAACGCCA
1 CTATAGATCAACAGTTAGCGGCGCTTTTTGAAAAACGCCA
56947480 C
1 C
56947481 AAAAAAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (40 bp):
CTATAGATCAACAGTTAGCGGCGCTTTTTGAAAAACGCCA
Found at i:56947680 original size:7 final size:7
Alignment explanation
Indices: 56947550--56947682 Score: 70
Period size: 7 Copynumber: 18.7 Consensus size: 7
56947540 TAGTTACTAT
*
56947550 TTTAAGG
1 TTTAGGG
*
56947557 TTTATGG
1 TTTAGGG
56947564 TTTATGGG
1 TTTA-GGG
*
56947572 TTAAGGG
1 TTTAGGG
56947579 -TTAGGG
1 TTTAGGG
* *
56947585 TTTAAGA
1 TTTAGGG
56947592 TTTAGGG
1 TTTAGGG
** *
56947599 GGTGGGG
1 TTTAGGG
*
56947606 TTTAAGG
1 TTTAGGG
56947613 TTTAGGGG
1 TTTA-GGG
*
56947621 TTAAGGG
1 TTTAGGG
* *
56947628 TTTATGT
1 TTTAGGG
*
56947635 TTTATGG
1 TTTAGGG
* *
56947642 TTTAAGA
1 TTTAGGG
56947649 TTTAGGG
1 TTTAGGG
**
56947656 GATAGGGG
1 TTTA-GGG
*
56947664 TTAAGGG
1 TTTAGGG
56947671 TTTAGGG
1 TTTAGGG
56947678 TTTAG
1 TTTAG
56947683 ATTAATTAGT
Statistics
Matches: 91, Mismatches: 31, Indels: 8
0.70 0.24 0.06
Matches are distributed among these distances:
6 5 0.05
7 72 0.79
8 14 0.15
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (7 bp):
TTTAGGG
Found at i:56947680 original size:36 final size:36
Alignment explanation
Indices: 56947603--56947685 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
56947593 TTAGGGGGTG
* * * * *
56947603 GGGTTTAAGGTTTAGGGGTTAAGGGTTTATGTTTTA
1 GGGTTTAAGATTTAGGGGATAAGGGTTAAGGGTTTA
* *
56947639 TGGTTTAAGATTTAGGGGATAGGGGTTAAGGGTTTA
1 GGGTTTAAGATTTAGGGGATAAGGGTTAAGGGTTTA
56947675 GGGTTT-AGATT
1 GGGTTTAAGATT
56947686 AATTAGTGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 5 0.13
36 34 0.87
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (36 bp):
GGGTTTAAGATTTAGGGGATAAGGGTTAAGGGTTTA
Found at i:56948301 original size:14 final size:13
Alignment explanation
Indices: 56948252--56948303 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
56948242 TTGGTTTTTT
56948252 TATTTATAAAAACCA
1 TATTTATAAAAA--A
56948267 -ATTTATAAAAAA
1 TATTTATAAAAAA
* *
56948279 TAGTAATAAAAAA
1 TATTTATAAAAAA
56948292 TATTTTATAAAA
1 TA-TTTATAAAA
56948304 TCACTTAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 1 0.03
13 12 0.39
14 18 0.58
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (13 bp):
TATTTATAAAAAA
Found at i:56954606 original size:44 final size:44
Alignment explanation
Indices: 56954558--56954646 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
56954548 GCTATCCCTT
* **
56954558 TCATTTAGGTGTCAACTTTTTTTTAACAGATATTATACCTTATA
1 TCATTTAGGTGTCAACATTAATTTAACAGATATTATACCTTATA
* * *
56954602 TCATTTAGGTGTCAACATTAATTTAATAGATGTTATGCCTTATA
1 TCATTTAGGTGTCAACATTAATTTAACAGATATTATACCTTATA
56954646 T
1 T
56954647 GATGCTATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.46
Consensus pattern (44 bp):
TCATTTAGGTGTCAACATTAATTTAACAGATATTATACCTTATA
Found at i:56956903 original size:5 final size:6
Alignment explanation
Indices: 56956835--56956902 Score: 57
Period size: 6 Copynumber: 11.0 Consensus size: 6
56956825 ATTTTATTGA
* * * *
56956835 TATTTT TATATT TAATTT TATTTT TATTATT TA-TTT TAGTTTT GATTCTA
1 TATTTT TATTTT TATTTT TATTTT TATT-TT TATTTT TA-TTTT TATT-TT
*
56956885 AATTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT
56956903 AATATTTAAG
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
5 4 0.08
6 33 0.67
7 12 0.24
ACGTcount: A:0.24, C:0.01, G:0.03, T:0.72
Consensus pattern (6 bp):
TATTTT
Found at i:56957017 original size:35 final size:35
Alignment explanation
Indices: 56956949--56957017 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
56956939 TAATTGTGTT
*
56956949 ATTAATTTATTATTTTAGATTCTAAATTTAAATTC
1 ATTAATTTATTATTTTAGATTCTAAATTAAAATTC
* * *
56956984 ATTAATTT-TTATATTTAGTTTTTAAGTTAAAATT
1 ATTAATTTATTAT-TTTAGATTCTAAATTAAAATT
56957018 TTAACTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 4 0.14
35 25 0.86
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (35 bp):
ATTAATTTATTATTTTAGATTCTAAATTAAAATTC
Found at i:56957214 original size:42 final size:42
Alignment explanation
Indices: 56957149--56957393 Score: 249
Period size: 42 Copynumber: 5.8 Consensus size: 42
56957139 AATAGTCATA
* * * *
56957149 TTCTTTAGCGGCGTTTATAGGAAAAGTGCCGCTAAATGTCTG
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
* * **
56957191 TTCTATAGCGGCATTTGTGGGAAAAATGCCGCTAAAGGTCTG
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
*
56957233 TTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
* * * * *
56957275 TTCTGTAGAGGCGTTTGTGGAAAAAAGCGACGCTAAAGGCCAT-
1 TTCTTTAGCGGCGTTTGTGG-GAAAAGCGCCGCTAAAGGTC-TG
* * * * * *
56957318 ATCTTTAGCAGCGTTTGTAGGAAAAGAGCCGTTAAAGGCCATG
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC-TG
* * *
56957361 ATCTTTAGCGGCATTTGTGGGTAAAGCGCCGCT
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
56957394 GGTCTTTAGC
Statistics
Matches: 171, Mismatches: 29, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
42 111 0.65
43 59 0.35
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (42 bp):
TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
Found at i:56957475 original size:15 final size:15
Alignment explanation
Indices: 56957444--56957474 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
56957434 CACAAAAATG
56957444 TTAGCGGCGTTGTTT
1 TTAGCGGCGTTGTTT
56957459 TTAGCGGCGTT-TTT
1 TTAGCGGCGTTGTTT
56957473 TT
1 TT
56957475 TTGCGCTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.06, C:0.13, G:0.29, T:0.52
Consensus pattern (15 bp):
TTAGCGGCGTTGTTT
Found at i:56962820 original size:20 final size:21
Alignment explanation
Indices: 56962779--56962821 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
56962769 CCTAGTTTAT
56962779 TTATGTTATAATTGTTGCAAA
1 TTATGTTATAATTGTTGCAAA
56962800 TTATGTT-TAATT-TTGCTAAA
1 TTATGTTATAATTGTTGC-AAA
56962820 TT
1 TT
56962822 CTATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 10 0.48
21 7 0.33
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (21 bp):
TTATGTTATAATTGTTGCAAA
Found at i:56963379 original size:35 final size:35
Alignment explanation
Indices: 56963332--56963399 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
56963322 TCTAAAGAAG
*
56963332 AAAGATGACATTTGGGTAATTGTTGATCAGTTGTC
1 AAAGATGACATTTGGATAATTGTTGATCAGTTGTC
*
56963367 AAAGATGTCATTTGGATAATTGTTGATCAGTTG
1 AAAGATGACATTTGGATAATTGTTGATCAGTTG
56963400 ACTAAGTCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.38
Consensus pattern (35 bp):
AAAGATGACATTTGGATAATTGTTGATCAGTTGTC
Found at i:56965927 original size:44 final size:48
Alignment explanation
Indices: 56965806--56965930 Score: 156
Period size: 48 Copynumber: 2.7 Consensus size: 48
56965796 GGGTAAGGTA
56965806 CCAATGCCATGTCCTAGACATGGTCTTACACTGACTATCGTCATCGAGG
1 CCAATGCCATGTCCTAGACATGGTCTTACACTGACTATCGT-ATCGAGG
56965855 CCAATGCCATGTCC-AGACATGGTCTTACACTGACATATC-T-T-GTA-G
1 CCAATGCCATGTCCTAGACATGGTCTTACACTGAC-TATCGTATCG-AGG
* *
56965900 CCGATG-CGTGTCCTAGACAT-GTCTTACACTG
1 CCAATGCCATGTCCTAGACATGGTCTTACACTG
56965931 GCTTACATCT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
44 17 0.24
45 13 0.18
46 2 0.03
48 21 0.30
49 18 0.25
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CCAATGCCATGTCCTAGACATGGTCTTACACTGACTATCGTATCGAGG
Found at i:56978102 original size:21 final size:21
Alignment explanation
Indices: 56978061--56978104 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
56978051 TGGTTCAATC
* *
56978061 TCTGTGGGATCTTCTTCTTCT
1 TCTGTGGGATCCTCCTCTTCT
56978082 TCTGTGGGATCCTCACT-TTCT
1 TCTGTGGGATCCTC-CTCTTCT
56978103 TC
1 TC
56978105 AACTTGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.07, C:0.27, G:0.18, T:0.48
Consensus pattern (21 bp):
TCTGTGGGATCCTCCTCTTCT
Found at i:56979364 original size:16 final size:15
Alignment explanation
Indices: 56979339--56979372 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
56979329 AAAGTTGATA
*
56979339 ATAATTAATATATATT
1 ATAATAAATATA-ATT
56979355 ATAATAAATATAATT
1 ATAATAAATATAATT
56979370 ATA
1 ATA
56979373 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:56980907 original size:21 final size:21
Alignment explanation
Indices: 56980881--56980926 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
56980871 CCATACACGG
56980881 CTGCGACACATGGTCGTGTCT
1 CTGCGACACATGGTCGTGTCT
56980902 CTGCGACACATGGTCGTGTCT
1 CTGCGACACATGGTCGTGTCT
56980923 CTGC
1 CTGC
56980927 CTGTGTGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.13, C:0.30, G:0.28, T:0.28
Consensus pattern (21 bp):
CTGCGACACATGGTCGTGTCT
Found at i:56986337 original size:26 final size:26
Alignment explanation
Indices: 56986284--56986350 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
56986274 CATAGAGCCA
*
56986284 TAATCAGGAAGTTCACAAAGAAATTT
1 TAATCAGGAAGCTCACAAAGAAATTT
*
56986310 TAATCAGGAAGCTCACAAAG-AGTGTT
1 TAATCAGGAAGCTCACAAAGAAAT-TT
*
56986336 TAAACAGGAAGCTCA
1 TAATCAGGAAGCTCA
56986351 AATGAGCCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 2 0.05
26 35 0.95
ACGTcount: A:0.43, C:0.15, G:0.19, T:0.22
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAAATTT
Found at i:56986537 original size:65 final size:65
Alignment explanation
Indices: 56986410--56986555 Score: 166
Period size: 65 Copynumber: 2.2 Consensus size: 65
56986400 AGCTAGCCAT
* * * ** * *
56986410 AACAGGACACCCACAAATAGCTGCGTTTGTTTCTGCAACATATGCCGGATCATAACCAATCATAA
1 AACAGGACGCTCACAAATAGCTGCGTTTGTGTCCACAACATATGCAGGATCACAACCAATCATAA
* * *** *
56986475 AATAGGACGCTCACAAATAGCTGCGTTTGTGTCCACAATATATGCAGGATCACAATTGATCATAT
1 AACAGGACGCTCACAAATAGCTGCGTTTGTGTCCACAACATATGCAGGATCACAACCAATCATAA
*
56986540 AACAGTACGCTCACAA
1 AACAGGACGCTCACAA
56986556 GGAGTTGCGG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (65 bp):
AACAGGACGCTCACAAATAGCTGCGTTTGTGTCCACAACATATGCAGGATCACAACCAATCATAA
Found at i:56990804 original size:16 final size:16
Alignment explanation
Indices: 56990785--56990815 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56990775 CTTCTTCACT
56990785 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
56990801 TACTTACTTACTTAA
1 TACTCACTTACTTAA
56990816 TCAAATTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:56990821 original size:20 final size:20
Alignment explanation
Indices: 56990782--56990821 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
56990772 AAACTTCTTC
* *
56990782 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
56990802 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
56990822 TCATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:56991196 original size:55 final size:53
Alignment explanation
Indices: 56991054--56991261 Score: 231
Period size: 55 Copynumber: 3.8 Consensus size: 53
56991044 ATCCTTTTGA
* *
56991054 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
56991107 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTCGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT-GCCTTAT-G
* ***
56991161 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * *
56991214 AAACCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
56991262 AAACCCTAAT
Statistics
Matches: 130, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.03
53 45 0.35
54 8 0.06
55 69 0.53
56 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:56991206 original size:108 final size:110
Alignment explanation
Indices: 56991054--56991254 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
56991044 ATCCTTTTGA
* *
56991054 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
56991117 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTCGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTCGCCTTATAGT
* * *
56991162 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
56991227 TGTCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
56991255 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 27 0.32
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTCGCCTTATAGT
Found at i:56994513 original size:47 final size:49
Alignment explanation
Indices: 56994391--56994569 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 49
56994381 TGTAACCCGC
* *
56994391 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
* *
56994437 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * * *
56994487 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GA--ACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
56994530 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
56994570 TCAACCATCC
Statistics
Matches: 110, Mismatches: 12, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 61 0.55
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:56994557 original size:93 final size:93
Alignment explanation
Indices: 56994398--56994569 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
56994388 CGCCCATAAG
** * *
56994398 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56994463 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
56994491 CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56994556 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
56994570 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:56998953 original size:30 final size:30
Alignment explanation
Indices: 56998919--56998979 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
56998909 TCCTTAACTC
56998919 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
56998949 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
56998979 A
1 A
56998980 GGCTGGAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:57003358 original size:30 final size:30
Alignment explanation
Indices: 57003324--57003384 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
57003314 TCCTTAACTC
57003324 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
57003354 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
57003384 A
1 A
57003385 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:57004190 original size:38 final size:37
Alignment explanation
Indices: 57004147--57004238 Score: 116
Period size: 38 Copynumber: 2.5 Consensus size: 37
57004137 GCGATCAAAT
57004147 GAAACAAAGTGATAAGTGCCTTACACTTATCTG-ATCAA
1 GAAACAAAGTGATAAGTGCC-TACACTTATCTGAATC-A
* *
57004185 GAAACAAAGTGATAGGTGGCTACACTTATCTGAATCA
1 GAAACAAAGTGATAAGTGCCTACACTTATCTGAATCA
* *
57004222 G-GACAGAGTGATAAGTG
1 GAAACAAAGTGATAAGTG
57004239 ATCATACGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
36 13 0.27
37 14 0.29
38 21 0.44
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (37 bp):
GAAACAAAGTGATAAGTGCCTACACTTATCTGAATCA
Found at i:57004845 original size:12 final size:12
Alignment explanation
Indices: 57004828--57004852 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57004818 CGGGTAAGGG
57004828 GTGTTACATTTA
1 GTGTTACATTTA
57004840 GTGTTACATTTA
1 GTGTTACATTTA
57004852 G
1 G
57004853 GGGTCCTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (12 bp):
GTGTTACATTTA
Found at i:57011282 original size:93 final size:93
Alignment explanation
Indices: 57011138--57011777 Score: 722
Period size: 93 Copynumber: 6.8 Consensus size: 93
57011128 GCAATTGCCC
* * * *
57011138 TTCGGACTTATCACATTTATACACTTCCACATCCATTCACATTGGCCATTCGGCCTTATCACATA
1 TTCGGCCTTATCACATATATACACTTTCACATTCA-TCACATTGGCCATTCGGCCTTATCACATA
57011203 TATAC-TTTCACATTCCATCACATTGGCCA
65 TATACATTTCACATT-CATCACATTGGCCA
* * *
57011232 TTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTC-GCCTTTATCACAC
1 TTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCC-TTATCACAT
*
57011295 ATACACATGTTCACATTCATCACATTGGCCA
64 ATATACAT-TTCACATTCATCACATTGGCCA
* * * *
57011326 TTC-GCCTTATCACACATACACA-TGTTCACATTCCATCCCATT-GCCATTCGGCC--ATCTCAT
1 TTCGGCCTTATCACATATATACACT-TTCACATT-CATCACATTGGCCATTCGGCCTTATCACAT
* *
57011386 ATATGCAGTTCACATTCATCACATTGG-CA
64 ATATACATTTCACATTCATCACATTGGCCA
* *
57011415 TTCGGCCTTATCACACATACACA-TGTTCACATTCATCACAATTGGCCATTCGGCCTTAATCACA
1 TTCGGCCTTATCACATATATACACT-TTCACATTCATCAC-ATTGGCCATTCGGCCTT-ATCAC-
*
57011479 TATATATACACTTCACATTCATCACATTGGCCA
62 -ATATATACATTTCACATTCATCACATTGGCCA
* * *
57011512 TTCGG-CTTATCACATATATA-ACTTTCACATTCATCA-ATCGGCCATTAGGCCTTTTCACATAT
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--AT
*
57011574 ATATACACTTTCACATTCATCACATCGGCCA
64 ATATACA-TTTCACATTCATCACATTGGCCA
* * *
57011605 TTAGG-CTTATCACATATATA-ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATAT
1 TTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA-
*
57011667 TATACACTTCACATTCATCACACTTGGCCA
65 TATACATTTCACATTCATCACA-TTGGCCA
* *
57011697 TTAGGCCTTATCACATATAAATACACTTTCACATTCATCA-ATTGGCCATT-AGCCTTATCACAT
1 TTCGGCCTTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
57011760 ATAATACACTTTCACATT
64 AT-ATACA-TTTCACATT
57011778 TATTCAAATA
Statistics
Matches: 483, Mismatches: 36, Indels: 52
0.85 0.06 0.09
Matches are distributed among these distances:
89 10 0.02
90 51 0.11
91 39 0.08
92 35 0.07
93 151 0.31
94 75 0.16
95 50 0.10
96 65 0.13
97 7 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (93 bp):
TTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAT
ATACATTTCACATTCATCACATTGGCCA
Found at i:57011290 original size:47 final size:45
Alignment explanation
Indices: 57011144--57011777 Score: 656
Period size: 46 Copynumber: 13.6 Consensus size: 45
57011134 GCCCTTCGGA
* * *
57011144 CTTATCACATTTATACACTTCCACATCCATTCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TTTCACATTCA-TCACATTGGCCATTC-GC
57011192 CTTATCACATATATAC-TTTCACATTCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATTTCACATT-CATCACATTGGCCATTC-GC
* *
57011238 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGC
1 CTTATCACATATATACAT-TTCACATTCATCACATTGGCCATTCGC
* *
57011284 CTTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGC
1 C-TTATCACATATATACAT-TTCACATTCATCACATTGGCCATTCGC
* * *
57011331 CTTATCACACATACACATGTTCACATTCCATCCCATT-GCCATTCGGC
1 CTTATCACATATATACAT-TTCACATT-CATCACATTGGCCATTC-GC
* * *
57011378 C--ATCTCATATATGCAGTTCACATTCATCACATTGG-CATTCGGC
1 CTTATCACATATATACATTTCACATTCATCACATTGGCCATTC-GC
* *
57011421 CTTATCACACATACACATGTTCACATTCATCACAATTGGCCATTCGGC
1 CTTATCACATATATACAT-TTCACATTCATCAC-ATTGGCCATTC-GC
* *
57011469 CTTAATCACATATATATACACTTCACATTCATCACATTGGCCATTCGG
1 CTT-ATCAC--ATATATACATTTCACATTCATCACATTGGCCATTCGC
* *
57011517 CTTATCACATATATA-ACTTTCACATTCATCA-ATCGGCCATTAGGC
1 CTTATCACATATATACA-TTTCACATTCATCACATTGGCCATT-CGC
* * * *
57011562 CTTTTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CTTATCAC--ATATATACA-TTTCACATTCATCACATTGGCCATTCGC
* * *
57011610 CTTATCACATATATA-ACTTTCACATTCATCACATCGGCCATTAGG
1 CTTATCACATATATACA-TTTCACATTCATCACATTGGCCATTCGC
* *
57011655 CTTATCACATATTATACACTTCACATTCATCACACTTGGCCATTAGGC
1 CTTATCACATA-TATACATTTCACATTCATCACA-TTGGCCATT-CGC
*
57011703 CTTATCACATATAAATACACTTTCACATTCATCA-ATTGGCCATTAGC
1 CTTATCACATAT--ATACA-TTTCACATTCATCACATTGGCCATTCGC
57011750 CTTATCACATATAATACACTTTCACATT
1 CTTATCACATAT-ATACA-TTTCACATT
57011778 TATTCAAATA
Statistics
Matches: 519, Mismatches: 39, Indels: 58
0.84 0.06 0.09
Matches are distributed among these distances:
43 17 0.03
44 19 0.04
45 89 0.17
46 131 0.25
47 114 0.22
48 83 0.16
49 32 0.06
50 27 0.05
51 7 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (45 bp):
CTTATCACATATATACATTTCACATTCATCACATTGGCCATTCGC
Found at i:57022473 original size:46 final size:45
Alignment explanation
Indices: 57022448--57022755 Score: 250
Period size: 46 Copynumber: 6.4 Consensus size: 45
57022438 GATCAAGTGA
* * *
57022448 CAAGTGGA-AAGTGATAAGTAATAGCT-TCGGCTATACTTATCTGAT
1 CAAGT-GACAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGAT
* * *
57022493 CAAGTGATAAAGTGATAAGTGATAGCT-TCGGCTATACTTATCTGAT
1 CAAGTGA-CAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGAT
57022539 CAAGTGACAAAGTGATAAGTGATAGCT-TCAGCTACACTTATCTGAT
1 CAAGTGAC-AAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGAT
*
57022585 CAAGTGACAAGTGGAAAGTGATAAGTGATAGCT-TCGGCTACACTTATCTGAT
1 CAAGTGAC-------AAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGAT
* *
57022637 CAAGTGACAAGTGAAAAGTGATAAGTGATAGCT-TCGCTATACTTATCTGAT
1 CAAGTGAC-------AAGTGATAAGTGATAGCTATAGCTACACTTATCTGAT
* *
57022688 CAATGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGAT
1 CAA-GTGAC-AAGTGATAAGTGATAGCTATAGCTACACTTATCTGAT
*
57022735 CAAGAGACAAAGTGATAAGTG
1 CAAGTGAC-AAGTGATAAGTG
57022756 GCTACACTTA
Statistics
Matches: 241, Mismatches: 11, Indels: 21
0.88 0.04 0.08
Matches are distributed among these distances:
44 2 0.01
45 5 0.02
46 123 0.51
47 19 0.08
51 18 0.07
52 74 0.31
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (45 bp):
CAAGTGACAAGTGATAAGTGATAGCTATAGCTACACTTATCTGAT
Found at i:57022474 original size:52 final size:51
Alignment explanation
Indices: 57022403--57022755 Score: 439
Period size: 52 Copynumber: 7.1 Consensus size: 51
57022393 ATCAAGTGAT
* *
57022403 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-G
* * *
57022455 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG---A-T-
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
57022501 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
57022547 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-G
*
57022599 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* **
57022650 AAAAGTGATAAGTGATAGCTTC-GCTATACTTATCTGATCAA-TG---AGAC
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
57022697 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGTG
57022749 ATAAGTG
1 A-AAGTG
57022756 GCTACACTTA
Statistics
Matches: 268, Mismatches: 17, Indels: 31
0.85 0.05 0.10
Matches are distributed among these distances:
46 107 0.40
47 20 0.07
48 2 0.01
49 1 0.00
50 2 0.01
51 19 0.07
52 112 0.42
53 5 0.02
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:57022509 original size:98 final size:96
Alignment explanation
Indices: 57022389--57022755 Score: 483
Period size: 98 Copynumber: 3.7 Consensus size: 96
57022379 TTTGAGTACT
* *
57022389 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
57022454 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTC-GCTATACTTA
* *
57022487 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
57022547 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTC-GCTATACTTA
*
57022579 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
57022644 CAAGTGAAAAGTGATAAGTGATAGCTTCGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGCTATACTTA
* * * *
57022682 TCTGATCAATGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAG
1 TCTGATCAA-GTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAG
57022747 TGATAAGTG
64 TGA-AAGTG
57022756 GCTACACTTA
Statistics
Matches: 240, Mismatches: 14, Indels: 29
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 145 0.60
99 10 0.04
101 1 0.00
103 18 0.08
104 23 0.10
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (96 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGCTATACTTA
Found at i:57022747 original size:144 final size:139
Alignment explanation
Indices: 57022389--57022755 Score: 504
Period size: 144 Copynumber: 2.5 Consensus size: 139
57022379 TTTGAGTACT
* *
57022389 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-----
* *
57022454 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
61 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
57022519 TTCGGCTATACTTA
126 TTCGGCTATACTTA
*
57022533 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-----
57022598 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGT
61 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTG---A-T--AAAGTGATAAGT
57022663 GATAGCTTC-GCTATACTTA
120 GATAGCTTCGGCTATACTTA
* *
57022682 TCTGATCAATGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC-AAA
1 TCTGATCAA-GTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACGAAA
57022746 GTGATAAGTG
65 GTGATAAGTG
57022756 GCTACACTTA
Statistics
Matches: 208, Mismatches: 8, Indels: 14
0.90 0.03 0.06
Matches are distributed among these distances:
144 118 0.57
147 1 0.00
148 1 0.00
149 19 0.09
150 69 0.33
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (139 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACGAAAG
TGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGG
CTATACTTA
Found at i:57022763 original size:37 final size:37
Alignment explanation
Indices: 57022719--57022864 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
57022709 GATAGCTTTA
*
57022719 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
57022756 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
57022793 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
57022830 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
57022865 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:57023474 original size:12 final size:12
Alignment explanation
Indices: 57023457--57023481 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57023447 CGGGTAAGGG
57023457 GTGTTACATTTA
1 GTGTTACATTTA
57023469 GTGTTACATTTA
1 GTGTTACATTTA
57023481 G
1 G
57023482 GGGTCCTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (12 bp):
GTGTTACATTTA
Found at i:57026577 original size:16 final size:16
Alignment explanation
Indices: 57026558--57026588 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57026548 CTTCTTCACT
57026558 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
57026574 TACTTACTTACTTAA
1 TACTCACTTACTTAA
57026589 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:57026594 original size:20 final size:20
Alignment explanation
Indices: 57026555--57026594 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
57026545 AAACTTCTTC
* *
57026555 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
57026575 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
57026595 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:57027541 original size:46 final size:45
Alignment explanation
Indices: 57027488--57027663 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
57027478 TATTTGGGCA
*
57027488 TCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAGTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAG-G
*** * * *
57027534 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAGG
* * *
57027579 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AGG
* * *
57027627 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57027664 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 71 0.66
47 33 0.31
48 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGG
Found at i:57027643 original size:93 final size:93
Alignment explanation
Indices: 57027484--57027655 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
57027474 GGGATATTTG
* ** *
57027484 GGCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAGTGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57027549 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
57027577 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
57027642 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
57027656 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:57029905 original size:22 final size:22
Alignment explanation
Indices: 57029877--57029998 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
57029867 TTCCACATCC
57029877 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
57029899 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
57029923 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
57029946 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
57029970 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
57029993 ATCACA
1 ATCACA
57029999 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:57030221 original size:49 final size:47
Alignment explanation
Indices: 57029849--57030493 Score: 933
Period size: 47 Copynumber: 13.6 Consensus size: 47
57029839 CCCTTCGGGA
* * *
57029849 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
57029896 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
57029943 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
57029990 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
57030037 CTTATCACACATACACA-TGTTCACATTCATC-CATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
57030083 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
57030130 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
57030177 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
57030226 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
57030273 CTTTTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
57030322 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
57030369 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
57030418 CTTATCACATATAAATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTCGGC
57030467 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
57030494 TATTCAAATA
Statistics
Matches: 563, Mismatches: 24, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
46 43 0.08
47 337 0.60
49 182 0.32
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:57030253 original size:96 final size:94
Alignment explanation
Indices: 57029849--57030493 Score: 933
Period size: 96 Copynumber: 6.8 Consensus size: 94
57029839 CCCTTCGGGA
* * *
57029849 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
57029914 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATTGGCCATTCGGC
* * * *
57029943 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
57030007 -TGTTCACATTCATCACATTGGCCATTCGGC
65 CT-TTCACATTCATCACATTGGCCATTCGGC
* * * *
57030037 CTTATCACACATACACA-TGTTCACATTCATC-CATTGGCCATTCGGCCTTATCTCATATATGCA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
57030100 -TGTTCACATTCATCACATTGGCCATTCGGC
65 CT-TTCACATTCATCACATTGGCCATTCGGC
* *
57030130 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATA
57030194 CACTTTCACATTCATCACATTGGCCATTCGGC
63 CACTTTCACATTCATCACATTGGCCATTCGGC
* * *
57030226 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
57030291 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
57030322 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
*
57030387 ACTTTCACATTCATCACATTGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
*
57030418 CTTATCACATATAAATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
57030483 ACTTTCACATT
64 ACTTTCACATT
57030494 TATTCAAATA
Statistics
Matches: 515, Mismatches: 27, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
93 91 0.18
94 132 0.26
96 248 0.48
97 2 0.00
98 42 0.08
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGC
Found at i:57032018 original size:56 final size:56
Alignment explanation
Indices: 57031951--57032070 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
57031941 TATTAGTTTA
*
57031951 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACGCAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
57032007 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
57032063 TTGCCCAT
1 TTGCCCAT
57032071 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:57034986 original size:15 final size:15
Alignment explanation
Indices: 57034947--57035026 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
57034937 GTATCTTGGG
* *
57034947 TTTCTTTATCCTGAA
1 TTTCTTTATTCTGGA
*
57034962 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
57034977 TTTCTTTATTGCTGG-
1 TTTCTTTATT-CTGGA
*
57034992 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
57035007 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
57035021 TTTCTT
1 TTTCTT
57035027 GTTATCTTTG
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
13 1 0.02
14 12 0.22
15 35 0.65
16 6 0.11
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:57036980 original size:46 final size:46
Alignment explanation
Indices: 57036927--57037102 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
57036917 TATTTGGGCA
57036927 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *** * * * *
57036973 TCCGAACTCATTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
57037020 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
57037066 CCCGAGCTCGTTGAGTTGAGTCTGATTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57037103 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 69 0.66
47 35 0.34
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:57038709 original size:108 final size:110
Alignment explanation
Indices: 57038570--57038770 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
57038560 ATCCTTTTGA
* *
57038570 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACC-A
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
57038632 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTCGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTCGCCTTATAGT
* * *
57038678 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
**
57038743 TTTCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
57038771 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 5 0.06
110 28 0.34
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTCGCCTTATAGT
Found at i:57038727 original size:55 final size:52
Alignment explanation
Indices: 57038521--57038777 Score: 222
Period size: 55 Copynumber: 4.8 Consensus size: 52
57038511 ACGCGGGTAC
* *
57038521 CTTACCATTGCCATGACTTGTCACATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCATTGCCATGTCTTG--ACATGGTCTTACAT-GTATCCTTGCCTTATG-AA
57038572 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTATGAA
* * * *
57038625 CTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTCGCCTTATAGTAA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACAT-GTATCCTT-GCCTTAT-G-AA
* * *
57038680 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATG-TATCCTTGCCTTATG-AA
** * *
57038733 CCTTACCAATTTTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACC-ATTGCCATGTCTTGACATGGTCTTACAT-GTATCCTT
57038778 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 21, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
49 20 0.12
50 1 0.01
51 19 0.11
52 4 0.02
53 48 0.28
54 9 0.05
55 66 0.38
56 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (52 bp):
CTTACCATTGCCATGTCTTGACATGGTCTTACATGTATCCTTGCCTTATGAA
Found at i:57048986 original size:18 final size:18
Alignment explanation
Indices: 57048963--57048999 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
57048953 CATTGTCACT
57048963 ACCACACTGAATGAGGAA
1 ACCACACTGAATGAGGAA
57048981 ACCACACTGAATGAGGAA
1 ACCACACTGAATGAGGAA
57048999 A
1 A
57049000 TCCCTCTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.11
Consensus pattern (18 bp):
ACCACACTGAATGAGGAA
Found at i:57058365 original size:40 final size:40
Alignment explanation
Indices: 57058328--57058487 Score: 234
Period size: 40 Copynumber: 4.0 Consensus size: 40
57058318 GCTACTCGTT
* *
57058328 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
57058368 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
57058408 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** *
57058448 CCAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
57058488 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 3 0.03
40 107 0.96
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:57058432 original size:80 final size:80
Alignment explanation
Indices: 57058295--57058487 Score: 234
Period size: 80 Copynumber: 2.4 Consensus size: 80
57058285 AAATCACGTA
* ** *
57058295 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGG-ATCTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACATAACCCGGATT-
57058356 TAGTAACTCGCACAAATG
63 TAGTAACTCGCACAAATG
*
57058374 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTC-GGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAACCCGGATTTA
*
57058438 GTAACTCGCACCAATG
65 GTAACTCGCACAAATG
** *
57058454 CCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CCTTCGGATCTTAACCCGGATTTAGTAACTCGCA
57058488 ATCTTAGTCC
Statistics
Matches: 99, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
79 14 0.14
80 83 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAG
TAACTCGCACAAATG
Found at i:57059735 original size:56 final size:56
Alignment explanation
Indices: 57059668--57059787 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
57059658 TATTAGTTTA
57059668 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
57059724 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
57059780 TTGCCCAT
1 TTGCCCAT
57059788 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:57067645 original size:50 final size:49
Alignment explanation
Indices: 57067568--57067808 Score: 261
Period size: 50 Copynumber: 4.8 Consensus size: 49
57067558 ATTATGAATA
* *
57067568 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTATTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTATTAA-T
* * * **
57067618 CACATGTGTAGTACTAAGTGCAAGCTACTATGCGTACTCAATGACT-TCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TC-A-GACTATTAAT
* *
57067669 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACT-ATTA-AT
* * * * * *
57067719 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTATTAAT
* *
57067768 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA
57067809 TAGCTTCGGC
Statistics
Matches: 159, Mismatches: 25, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 39 0.25
50 74 0.47
51 37 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTATTAAT
Found at i:57067808 original size:99 final size:99
Alignment explanation
Indices: 57067568--57067810 Score: 321
Period size: 101 Copynumber: 2.4 Consensus size: 99
57067558 ATTATGAATA
* * *
57067568 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTATTAAGTCACATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TATGAAGTCACATGTGTAGTACT
*
57067633 AAGTGCAAGCTACTATGCGTACTCAATGACTTCGAT
65 AAGTGCAAGCTACTACGCGTACTCAATGA-TTCGAT
* *
57067669 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTCACGTGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-ATGAAGTCACATGTGTAGTACT
* * *
57067734 AAGTGTAGGCTACTACGTGTAC-CAGATTG-TT-GAT
65 AAGTGCAAGCTACTACGCGTACTCA-A-TGATTCGAT
* *
57067768 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATA
57067811 GCTTCGGCTA
Statistics
Matches: 128, Mismatches: 11, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
98 1 0.01
99 43 0.34
100 5 0.04
101 77 0.60
102 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (99 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATATGAAGTCACATGTGTAGTACTA
AGTGCAAGCTACTACGCGTACTCAATGATTCGAT
Found at i:57069623 original size:26 final size:26
Alignment explanation
Indices: 57069564--57069620 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
57069554 AATCAACCCT
* * *
57069564 AGGGGTATAATGGTCATTTTGCTCTA
1 AGGGGTATAATGGTAATTTTACACTA
*
57069590 AGGGGTATAATGGTAATTTTCACACTT
1 AGGGGTATAATGGTAATTTT-ACACTA
57069617 AGGG
1 AGGG
57069621 TATTTAAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (26 bp):
AGGGGTATAATGGTAATTTTACACTA
Found at i:57070560 original size:17 final size:17
Alignment explanation
Indices: 57070538--57070570 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
57070528 TCGGCTATGG
57070538 AGAAAA-GACAAGATGAA
1 AGAAAAGGA-AAGATGAA
57070555 AGAAAAGGAAAGATGA
1 AGAAAAGGAAAGATGA
57070571 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.64, C:0.03, G:0.27, T:0.06
Consensus pattern (17 bp):
AGAAAAGGAAAGATGAA
Found at i:57077496 original size:26 final size:26
Alignment explanation
Indices: 57077439--57077496 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
57077429 CAAAATCAAC
* ** *
57077439 CCTAGGGGTATAATGGTCATTTTGCT
1 CCTAGGGGTATAATGGTAATTTCACA
57077465 CCTAGGGGTATAATGGTAATTTCACA
1 CCTAGGGGTATAATGGTAATTTCACA
*
57077491 CTTAGG
1 CCTAGG
57077497 TTATTTTAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTAATTTCACA
Found at i:57078443 original size:17 final size:17
Alignment explanation
Indices: 57078421--57078453 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
57078411 TCAACTATGG
57078421 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
*
57078438 AGAAAAGGAAAGATGA
1 AGAAAAGAAAAGATGA
57078454 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:57081886 original size:50 final size:49
Alignment explanation
Indices: 57081804--57081990 Score: 187
Period size: 50 Copynumber: 3.8 Consensus size: 49
57081794 TGAATACACG
* * * *
57081804 TGTGTAGTAGTAAGTGTAGGCTACTACATGTATCATACTGTTAAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTTAAGTCACA
* * * * * *
57081854 TGTGTAGTACTAACTGCAGGCTATTACGTGTATCAGATGATGAGGTCCCG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG-TTAAGTCACA
* * * * *
57081904 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGA-TCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTTAAGTCACA
* *
57081953 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
57081991 AGCTTCAGCT
Statistics
Matches: 111, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
48 1 0.01
49 38 0.34
50 71 0.64
51 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGTTAAGTCACA
Found at i:57081986 original size:99 final size:100
Alignment explanation
Indices: 57081802--57081990 Score: 245
Period size: 99 Copynumber: 1.9 Consensus size: 100
57081792 TGTGAATACA
* * * * *
57081802 CGTGTGTAGTAGTAAGTGTAGGCTACTACATGTATCATACTGTTAAGTCACATGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTATTAAGTCACATGTGTAGTACTAA
* *
57081867 CTGCAGGCTATTACGTGTATCAGATGATGAGGTCC
66 CTGCAGGCTACTACGCGTATCAGATGATGAGGTCC
* * * * *
57081902 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGA-TCGCATGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTATTAAGTCACATGTGTAGTACTAA
* *
57081966 GTGCAGGCTACTATGCGTATCAGAT
66 CTGCAGGCTACTACGCGTATCAGAT
57081991 AGCTTCAGCT
Statistics
Matches: 75, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
99 38 0.51
100 37 0.49
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (100 bp):
CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTATTAAGTCACATGTGTAGTACTAA
CTGCAGGCTACTACGCGTATCAGATGATGAGGTCC
Found at i:57089543 original size:26 final size:26
Alignment explanation
Indices: 57089506--57089589 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
57089496 TGATACAAAT
* *
57089506 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
57089532 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
57089558 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
57089584 TGATAA
1 TGATAA
57089590 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:57099633 original size:36 final size:37
Alignment explanation
Indices: 57099570--57099708 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
57099560 CGAATAGTCC
*
57099570 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
57099607 CCACACGTAGTTATC-GGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
57099643 CCACACGTAGTCATCGGGTCTTACCCGGACATAATAT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
57099680 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
57099709 ATATATTTTC
Statistics
Matches: 98, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
36 35 0.36
37 63 0.64
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:57099689 original size:73 final size:74
Alignment explanation
Indices: 57099570--57099708 Score: 235
Period size: 73 Copynumber: 1.9 Consensus size: 74
57099560 CGAATAGTCC
* * *
57099570 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTTATC-GGTCTTACCCGG
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATATCCACACGTAGTCATCGGGTCTTACCCGG
57099634 ACAAAATCT
66 ACAAAATCT
*
57099643 CCACACGTAGTCATCGGGTCTTACCCGGACATAATATCCACACGTAGTCATCGGGTCTTACCCGG
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATATCCACACGTAGTCATCGGGTCTTACCCGG
57099708 A
66 A
57099709 ATATATTTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
73 48 0.79
74 13 0.21
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (74 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATATCCACACGTAGTCATCGGGTCTTACCCGG
ACAAAATCT
Found at i:57099910 original size:48 final size:48
Alignment explanation
Indices: 57099849--57100225 Score: 682
Period size: 48 Copynumber: 7.9 Consensus size: 48
57099839 CTATACACAC
*
57099849 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
57099897 ATCTCATATATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
57099945 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
57099993 ATCTCATACATATTTTACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
57100041 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
57100089 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
57100137 ATCTCATACATATTTCACACTAGTCATACGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
57100185 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
57100226 CACATATATA
Statistics
Matches: 315, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 315 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:57111746 original size:43 final size:41
Alignment explanation
Indices: 57111693--57111919 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 41
57111683 TATTCGGATG
*
57111693 ATATCTAGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGC--GTAGTTGCT
** * *
57111736 ATATCAAGGCTAAGTCCCGACGGCATTTGTCCGAGTAGTTGCT
1 ATATCTGGGCTAAGTCCCGAAGGCATTTGT--GCGTAGTTGCT
*
57111779 ATACCTGGGCTAAGTCCCGAAGGCATTTGTGC-TAG-TGACT
1 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTG-CT
* **
57111819 ATATCCGGGCTAAGTCCCGAAGGCATTCATGC-TAG-TGACT
1 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTG-CT
*
57111859 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCG-AGTTGCT
1 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCT
* *
57111899 ATATC-CGGCTAAATCCCGAAG
1 ATATCTGGGCTAAGTCCCGAAG
57111920 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 15 0.09
40 78 0.49
41 3 0.02
43 63 0.39
45 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (41 bp):
ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCT
Found at i:57117459 original size:49 final size:49
Alignment explanation
Indices: 57117285--57117761 Score: 803
Period size: 49 Copynumber: 9.9 Consensus size: 49
57117275 CCCTTCGGGA
* * * * *
57117285 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
57117332 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57117379 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57117426 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57117475 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57117522 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57117571 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57117620 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57117667 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57117716 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
57117762 CGCCATACTA
Statistics
Matches: 410, Mismatches: 12, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 184 0.45
49 225 0.55
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:57117482 original size:96 final size:96
Alignment explanation
Indices: 57117285--57117761 Score: 800
Period size: 96 Copynumber: 5.0 Consensus size: 96
57117275 CCCTTCGGGA
* * * * * * * *
57117285 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
57117348 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
57117379 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
57117444 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
57117475 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
57117540 ACTTTCACATTCATCACATCGGTCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
57117571 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
57117634 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
57117667 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
57117732 ACACTTTCACATTCATCACATCAGCCATTA
64 ACACTTTCACATTCATCACATCGGCCATTA
57117762 CGCCATACTA
Statistics
Matches: 366, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 47 0.13
96 237 0.65
98 82 0.22
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:57117603 original size:145 final size:145
Alignment explanation
Indices: 57117285--57117761 Score: 845
Period size: 145 Copynumber: 3.3 Consensus size: 145
57117275 CCCTTCGGGA
* * * * * * *
57117285 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
57117348 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
57117411 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
57117426 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
57117491 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
57117556 CATCGGTCATTAGGC
131 CATCGGCCATTAGGC
57117571 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
57117636 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
57117701 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
*
57117716 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
57117762 CGCCATACTA
Statistics
Matches: 322, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 84 0.26
145 227 0.70
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (145 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:57120306 original size:49 final size:50
Alignment explanation
Indices: 57120188--57120314 Score: 132
Period size: 49 Copynumber: 2.6 Consensus size: 50
57120178 ATGTTGTGTT
* * *
57120188 GTGTATGACAATGTTTGGGACATGGCATCAAACGAGATATGCGATAGCTA
1 GTGTAAGACCATGTTTGGGACATGGCATCAAACGAGATATGCGATAGCCA
* * *** **
57120238 GTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATAATG-G-TAGCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCAAACGAGAT-ATGCGATAGCCA
*
57120287 GTGTAAGACCATGTTTGGGACGTGGCAT
1 GTGTAAGACCATGTTTGGGACATGGCAT
57120315 TGGTATCTTA
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
49 30 0.48
50 30 0.48
51 3 0.05
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (50 bp):
GTGTAAGACCATGTTTGGGACATGGCATCAAACGAGATATGCGATAGCCA
Found at i:57130570 original size:22 final size:22
Alignment explanation
Indices: 57130542--57130583 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
57130532 TTAAGAGGAC
57130542 TAAAAACATGTATAATTTGGGG
1 TAAAAACATGTATAATTTGGGG
57130564 TAAAAACATGTATAATTTGG
1 TAAAAACATGTATAATTTGG
57130584 TGTTTATCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (22 bp):
TAAAAACATGTATAATTTGGGG
Found at i:57137054 original size:47 final size:44
Alignment explanation
Indices: 57136981--57137108 Score: 150
Period size: 47 Copynumber: 2.8 Consensus size: 44
57136971 TCACTTGTGT
57136981 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATT-ATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGATGA
* * *
57137027 GAGCCAGTGTAAGACCATGTCTTGGACATGGCATCGGCATTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATT--GATGA
*
57137075 GTGCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG
57137109 GCTAAACGTT
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
45 4 0.06
46 19 0.27
47 27 0.38
48 21 0.30
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGATGA
Found at i:57140023 original size:49 final size:49
Alignment explanation
Indices: 57139970--57140197 Score: 267
Period size: 49 Copynumber: 4.6 Consensus size: 49
57139960 CTAGTATGCA
*
57139970 TAGTAGCCTGCACTTAGTACTAGACATGTGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
* ** **
57140019 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGACACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCTGGTACACG
* ** * * * *
57140069 TAGTAGCATGCACTTAGTACTACACACATGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCTGGTACACG
* * *
57140120 TAGTAGCCTACACTTAGTACTACACATGCGTCCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
* *
57140169 TAGTAGCCTGCACTTTGTACTGCACATGT
1 TAGTAGCCTGCACTTAGTACTACACATGT
57140198 AACCTCACAA
Statistics
Matches: 146, Mismatches: 30, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
49 67 0.46
50 46 0.32
51 33 0.23
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
Found at i:57142395 original size:20 final size:20
Alignment explanation
Indices: 57142370--57142411 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
57142360 ACGAACTTAA
57142370 CACAGTAATCTCACTCATAG
1 CACAGTAATCTCACTCATAG
*
57142390 CACAGTAATCTCGCTCATAG
1 CACAGTAATCTCACTCATAG
57142410 CA
1 CA
57142412 TTCTCACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.31, G:0.12, T:0.24
Consensus pattern (20 bp):
CACAGTAATCTCACTCATAG
Found at i:57145082 original size:40 final size:40
Alignment explanation
Indices: 57145026--57145250 Score: 355
Period size: 40 Copynumber: 5.6 Consensus size: 40
57145016 CGGATGATAA
* *
57145026 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
57145066 CCGGGCTAAG-CTCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
*
57145106 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
57145146 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57145186 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57145226 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57145251 AGCAAGTAGT
Statistics
Matches: 176, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 1 0.01
40 173 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:57145550 original size:22 final size:21
Alignment explanation
Indices: 57145509--57145552 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
57145499 GAATGTGCAT
57145509 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
57145531 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
57145553 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:57150206 original size:15 final size:15
Alignment explanation
Indices: 57150186--57150216 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
57150176 TCCTACGCTG
57150186 CGTCCCCCTTCTCCT
1 CGTCCCCCTTCTCCT
57150201 CGTCCCCCTTCTCCT
1 CGTCCCCCTTCTCCT
57150216 C
1 C
57150217 CTCCTCTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.61, G:0.06, T:0.32
Consensus pattern (15 bp):
CGTCCCCCTTCTCCT
Found at i:57161404 original size:45 final size:45
Alignment explanation
Indices: 57161348--57161493 Score: 247
Period size: 45 Copynumber: 3.2 Consensus size: 45
57161338 GCTACGATCG
* *
57161348 AGGCCCAAATAATATCTCACCGGCATTTTAGCCTGCTAGGCTCAA
1 AGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAA
* *
57161393 AGGCCTGAATAATATCTCACTGGCATTATAGCCTGCTAGGCTCAA
1 AGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAA
*
57161438 AGGCCCGAATAATATCTCACCGGCATTATAGCCTACTAGGCTCAA
1 AGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAA
57161483 AGGCCCGAATA
1 AGGCCCGAATA
57161494 GTACTGTACA
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 94 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
AGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAA
Found at i:57171924 original size:40 final size:40
Alignment explanation
Indices: 57171848--57172031 Score: 266
Period size: 40 Copynumber: 4.6 Consensus size: 40
57171838 CAAACCCAAG
* *
57171848 TACCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
*
57171887 TACCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
57171927 -AGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
1 TA-CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* *
57171967 TGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* *
57172007 TGCCTTCGGGACTTAGCTCGGATAT
1 TACCTTCGGGACTTAGCCCGGATAT
57172032 CATTCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
39 15 0.11
40 116 0.87
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
TACCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:57180487 original size:40 final size:40
Alignment explanation
Indices: 57180413--57180633 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
57180403 AACCCAAGTA
* *
57180413 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
57180452 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
57180492 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
57180532 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
57180572 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
57180611 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
57180634 CATTCGAATA
Statistics
Matches: 170, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 50 0.29
40 117 0.69
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:57192750 original size:42 final size:42
Alignment explanation
Indices: 57192691--57192775 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
57192681 CATTTAAACT
57192691 ATCATAATTTAAAACTAAACATACTTCTTTCCTAATCACAAA
1 ATCATAATTTAAAACTAAACATACTTCTTTCCTAATCACAAA
57192733 ATCATAATTTAAAACTAAACATACTTCTTTCCTAATCACAAA
1 ATCATAATTTAAAACTAAACATACTTCTTTCCTAATCACAAA
57192775 A
1 A
57192776 CCATGCACAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (42 bp):
ATCATAATTTAAAACTAAACATACTTCTTTCCTAATCACAAA
Found at i:57193357 original size:17 final size:17
Alignment explanation
Indices: 57193335--57193370 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
57193325 AGTCATTATC
57193335 TATTCAT-AACCTAAATA
1 TATTCATCAACC-AAATA
57193352 TATTCATCAACCAAATA
1 TATTCATCAACCAAATA
57193369 TA
1 TA
57193371 ACTAATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.33
Consensus pattern (17 bp):
TATTCATCAACCAAATA
Found at i:57196243 original size:43 final size:43
Alignment explanation
Indices: 57196146--57196245 Score: 116
Period size: 42 Copynumber: 2.3 Consensus size: 43
57196136 GACTTCTGTT
*
57196146 TTACATGTAAGACCATGTCTGGAACATTGGCATCGTATTTGAC
1 TTACATGTAAGACCATGTCTGGAACAGTGGCATCGTATTTGAC
* * *
57196189 TT-CATGTAAGACCTTGTTTGGGACAGTGGCATC-TATGTTTGA-
1 TTACATGTAAGACCATGTCTGGAACAGTGGCATCGTA--TTTGAC
*
57196231 TTACATATAAGACCA
1 TTACATGTAAGACCA
57196246 CATCTGGGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
41 2 0.04
42 29 0.60
43 17 0.35
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGAACAGTGGCATCGTATTTGAC
Found at i:57217083 original size:61 final size:61
Alignment explanation
Indices: 57216988--57217111 Score: 239
Period size: 61 Copynumber: 2.0 Consensus size: 61
57216978 GAAATCCTTG
*
57216988 AAAATTTATGTATAAATAAGGTATGTAGTTCATGGTAGCTTTTGAAATTGTTGAATGTATT
1 AAAATTTATGTATAAATAAGGTATGTAATTCATGGTAGCTTTTGAAATTGTTGAATGTATT
57217049 AAAATTTATGTATAAATAAGGTATGTAATTCATGGTAGCTTTTGAAATTGTTGAATGTATT
1 AAAATTTATGTATAAATAAGGTATGTAATTCATGGTAGCTTTTGAAATTGTTGAATGTATT
57217110 AA
1 AA
57217112 GCTAGTTACT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.42
Consensus pattern (61 bp):
AAAATTTATGTATAAATAAGGTATGTAATTCATGGTAGCTTTTGAAATTGTTGAATGTATT
Found at i:57218706 original size:40 final size:40
Alignment explanation
Indices: 57218621--57218841 Score: 220
Period size: 40 Copynumber: 5.6 Consensus size: 40
57218611 TTCGGATGAA
* * * *
57218621 ATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACCAT
1 ATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTATTGACTAT
57218660 ATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTATTGACTAT
* * * * *
57218700 ACCCGGGCTAAGTCCAGAAGG-CGTTTGTCCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGTAG-TTGTGCTA-TTGACTAT
* *
57218740 ATCCGGGCTAAGTCCCGAAGGCT-TTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGG-TAGTTGTGCTATTGACTAT
* * * *
57218780 ATCCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTA-TTGACTAT
*
57218820 ATCC-GGCTAAATCCCGAAGGTA
1 ATCCGGGCTAAGTCCCGAAGGTA
57218842 CTTGGGTTTG
Statistics
Matches: 152, Mismatches: 22, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
39 40 0.26
40 107 0.70
41 5 0.03
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTATTGACTAT
Found at i:57218756 original size:80 final size:80
Alignment explanation
Indices: 57218658--57218841 Score: 273
Period size: 80 Copynumber: 2.3 Consensus size: 80
57218648 GCTAGTGACC
* * *
57218658 ATATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTATTGACTATACCCGGGCTAAGTCCAGAAGGCG
1 ATATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTAGTGACTATACCCGGGCTAAGGCCAGAAGGCA
57218723 TTTGTCCGAGTTGCT
66 TTTGTCCGAGTTGCT
* * *
57218738 ATATCCGGGCTAAGTCCCGAAGGCT-TTTGTGCTAGTGACTATATCCGGGCTAAGGCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGG-TAGTTGTGCTAGTGACTATACCCGGGCTAAGGCCAGAAGGC
*
57218802 ATTTGTGCGAGTTGCT
65 ATTTGTCCGAGTTGCT
*
57218818 ATATCC-GGCTAAATCCCGAAGGTA
1 ATATCCGGGCTAAGTCCCGAAGGTA
57218842 CTTGGGTTTG
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
78 1 0.01
79 15 0.16
80 77 0.82
81 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTAGTGACTATACCCGGGCTAAGGCCAGAAGGCA
TTTGTCCGAGTTGCT
Found at i:57235609 original size:30 final size:30
Alignment explanation
Indices: 57235575--57235637 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
57235565 ATTTATTTTA
*
57235575 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTACTTTAGAA-GCAT
*
57235605 TTGTTAATTTTTTTATTACTTTAGAAGCAT
1 TTGTTAATTTTCTTATTACTTTAGAAGCAT
57235635 TTG
1 TTG
57235638 CTTATTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.25, C:0.06, G:0.11, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTACTTTAGAAGCAT
Found at i:57243888 original size:79 final size:81
Alignment explanation
Indices: 57243751--57243935 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
57243741 TTGAATGATG
*
57243751 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
57243815 TTTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
57243830 TTCCGGGCTAAG-CCTGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
57243892 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
57243910 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57243936 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:57243942 original size:40 final size:40
Alignment explanation
Indices: 57243751--57243935 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
57243741 TTGAATGATG
* * * *
57243751 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
57243791 TCCGGACTAAGAT-CCGAAGGCATTTTTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57243831 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57243870 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57243911 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57243936 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 81 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57243957 original size:79 final size:79
Alignment explanation
Indices: 57243804--57243968 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
57243794 GGACTAAGAT
* * * **
57243804 CCGAAGGCATTTTTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
57243869 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
57243883 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
57243946 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
57243962 CCGAAGG
1 CCGAAGG
57243969 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:57247984 original size:34 final size:34
Alignment explanation
Indices: 57247941--57248018 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
57247931 AGAGAAAGGG
* **
57247941 GAAACAGAAATTAGTAACTTTGAAGTAAGAGGTTA
1 GAAA-AGAAATTAGTAACTCTGAAGTAAGAGGCCA
*
57247976 GAAAAGAAATTTGTAACTCTGAAGTAAGAGGCCA
1 GAAAAGAAATTAGTAACTCTGAAGTAAGAGGCCA
57248010 GAAAAGAAA
1 GAAAAGAAA
57248019 CATAAGGTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
34 35 0.90
35 4 0.10
ACGTcount: A:0.49, C:0.08, G:0.23, T:0.21
Consensus pattern (34 bp):
GAAAAGAAATTAGTAACTCTGAAGTAAGAGGCCA
Found at i:57250797 original size:22 final size:20
Alignment explanation
Indices: 57250772--57250820 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
57250762 GTTATGTAAG
*
57250772 TTTGATGATTTTGGTATATTGA
1 TTTGATG-TTTTGGT-TATGGA
57250794 TTTGGTATGTTTTGGTTATGGA
1 TTT-G-ATGTTTTGGTTATGGA
57250816 TTTGA
1 TTTGA
57250821 GTAGTGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 11 0.46
23 8 0.33
24 3 0.12
ACGTcount: A:0.18, C:0.00, G:0.27, T:0.55
Consensus pattern (20 bp):
TTTGATGTTTTGGTTATGGA
Found at i:57254777 original size:64 final size:64
Alignment explanation
Indices: 57254696--57254879 Score: 167
Period size: 67 Copynumber: 2.8 Consensus size: 64
57254686 AGACATTATG
* *
57254696 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * * *
57254760 ATGTAGCTAGGTTGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGAGAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
57254825 AA
63 AA
* * * * *
57254827 ACTG--GTTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
57254880 CGAACTATAT
Statistics
Matches: 93, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 20 0.22
65 8 0.09
66 14 0.15
67 30 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:57257100 original size:16 final size:16
Alignment explanation
Indices: 57257079--57257117 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
57257069 ATGTAAGACA
57257079 GTATGAATAATAAATT
1 GTATGAATAATAAATT
57257095 GTATGAATAATAAATT
1 GTATGAATAATAAATT
*
57257111 GTTTGAA
1 GTATGAA
57257118 GTGGATAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (16 bp):
GTATGAATAATAAATT
Found at i:57269980 original size:46 final size:46
Alignment explanation
Indices: 57269834--57270003 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
57269824 GGTTGAGCAT
* *
57269834 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
57269879 CCGAACTCGTTGAGTTGAGTCC-AGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
57269923 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
57269971 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
57270004 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 9, Indels: 21
0.78 0.07 0.16
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 7 0.07
45 22 0.21
46 54 0.51
47 5 0.05
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:57285261 original size:29 final size:29
Alignment explanation
Indices: 57285226--57285283 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
57285216 CTTGTAACAT
57285226 CATTTATCATGTATGAACTTAACTCATAC
1 CATTTATCATGTATGAACTTAACTCATAC
57285255 CATTTATCATGTATGAACTTAACTCATAC
1 CATTTATCATGTATGAACTTAACTCATAC
57285284 TCGGAATTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (29 bp):
CATTTATCATGTATGAACTTAACTCATAC
Found at i:57391887 original size:40 final size:40
Alignment explanation
Indices: 57391843--57392046 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
57391833 ATTCGAAATG
* * *
57391843 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* * *
57391883 TCCGGACTAAGACTCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
57391922 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
57391962 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
57392002 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
57392042 TCCGG
1 TCCGG
57392047 TTAAATTTCA
Statistics
Matches: 141, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 37 0.26
40 97 0.69
41 7 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:57391965 original size:79 final size:81
Alignment explanation
Indices: 57391843--57392025 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
57391833 ATTCGAAATG
* * *
57391843 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGACTCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCATT
57391907 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * ** *
57391922 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCAT
57391985 TTGTGCGAGTTACTATA
65 TTGTGCGAGTTACTATA
* *
57392002 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
57392026 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 59 0.66
80 30 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:57392049 original size:79 final size:79
Alignment explanation
Indices: 57391897--57392050 Score: 206
Period size: 79 Copynumber: 1.9 Consensus size: 79
57391887 GACTAAGACT
* **
57391897 CGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
57391962 TCCGGGTTAAGTCC
66 TCCGGGTTAAGTCC
* *
57391976 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CT
*
57392039 ATATCC-GGTTAA
63 AAATCCGGGTTAA
57392051 ATTTCAGTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAGTCC
Found at i:57406822 original size:48 final size:48
Alignment explanation
Indices: 57406657--57406829 Score: 310
Period size: 48 Copynumber: 3.6 Consensus size: 48
57406647 TTGCTCAGGA
* *
57406657 GAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
*
57406705 GAATGGCTAGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
57406753 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
*
57406801 GAATGGCTAGTGTGAAATATGTAGGAGAT
1 GAATGGCTAGTGTGAAATATGTATGAGAT
57406830 GTGTGTATAT
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 120 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
Found at i:57407020 original size:37 final size:37
Alignment explanation
Indices: 57406970--57407072 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
57406960 GGAAATATAT
57406970 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57407007 TCCGGGTAAGACCCGATGACTACGCGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57407044 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
57407073 GGACTTTTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:57409010 original size:15 final size:15
Alignment explanation
Indices: 57408990--57409021 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
57408980 AGTCTTCATC
57408990 TACCCTACATACATG
1 TACCCTACATACATG
57409005 TACCCTACATACATG
1 TACCCTACATACATG
57409020 TA
1 TA
57409022 GCCATTCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.31, G:0.06, T:0.28
Consensus pattern (15 bp):
TACCCTACATACATG
Found at i:57420862 original size:21 final size:22
Alignment explanation
Indices: 57420838--57420881 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
57420828 ATCTTCTTAA
*
57420838 TTTGGTCCGTTTTGTC-CCTTT
1 TTTGCTCCGTTTTGTCTCCTTT
*
57420859 TTTGCTCCTTTTTGTCTCCTTT
1 TTTGCTCCGTTTTGTCTCCTTT
57420881 T
1 T
57420882 AATTCTTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.00, C:0.25, G:0.14, T:0.61
Consensus pattern (22 bp):
TTTGCTCCGTTTTGTCTCCTTT
Found at i:57428479 original size:43 final size:43
Alignment explanation
Indices: 57428432--57428546 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
57428422 TCGATGCAAT
* * * * *
57428432 TGTCCCAGAAAGGGTCTTACATGGAATCATAATATAATGCTAA
1 TGTCCCAGAAATGGTCTTACATGTAATCAAAATACAATGCCAA
** * *
57428475 TGTCCCAGTCATGGTCTTACACGTAATGAAAATACAATGCCAA
1 TGTCCCAGAAATGGTCTTACATGTAATCAAAATACAATGCCAA
57428518 TGTCCCA-AACATGGTCTTACATGTAATCA
1 TGTCCCAGAA-ATGGTCTTACATGTAATCA
57428547 CATCTCGATA
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (43 bp):
TGTCCCAGAAATGGTCTTACATGTAATCAAAATACAATGCCAA
Found at i:57447090 original size:30 final size:30
Alignment explanation
Indices: 57447056--57447116 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
57447046 TCCTTAACTC
57447056 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
57447086 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
57447116 A
1 A
57447117 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:57452428 original size:34 final size:34
Alignment explanation
Indices: 57452381--57452471 Score: 101
Period size: 34 Copynumber: 2.6 Consensus size: 34
57452371 TTTGCATACT
* * * *
57452381 GTACTGAAGTGGGCTAAGGCCTAGACTGCCATTG
1 GTACTAAAATGGGCTAAGGCCCAGACTGCCACTG
**
57452415 GTACTAAAATGGGCTAAGGCCCAGACTGTTACTG
1 GTACTAAAATGGGCTAAGGCCCAGACTGCCACTG
* *
57452449 CTACTGAAAAAGGGCTAAGGCCC
1 GTACT-AAAATGGGCTAAGGCCC
57452472 CTAACTGAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
34 32 0.67
35 16 0.33
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.21
Consensus pattern (34 bp):
GTACTAAAATGGGCTAAGGCCCAGACTGCCACTG
Found at i:57457313 original size:85 final size:85
Alignment explanation
Indices: 57457170--57457348 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
57457160 GGCCGGCCAT
57457170 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
57457235 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
57457255 GAGCATGGGTGGACAAGATGTTATGGCTAAAAGCATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
57457320 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
57457340 GGGCATGGG
1 GAGCATGGG
57457349 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:57458667 original size:47 final size:47
Alignment explanation
Indices: 57458613--57459299 Score: 1019
Period size: 47 Copynumber: 14.6 Consensus size: 47
57458603 TATTTGAATA
*
57458613 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57458660 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCC-GTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
57458705 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57458752 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
57458799 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
57458848 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
57458895 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
57458942 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57458991 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57459038 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57459085 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57459132 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57459179 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
57459226 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
57459273 GACGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
57459300 TCCCGAAGGG
Statistics
Matches: 605, Mismatches: 27, Indels: 16
0.93 0.04 0.02
Matches are distributed among these distances:
45 41 0.07
46 7 0.01
47 465 0.77
49 91 0.15
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:57458893 original size:22 final size:22
Alignment explanation
Indices: 57458865--57458940 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
57458855 AAGTGTATAT
57458865 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
57458887 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
57458911 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
57458934 ATGTGAT
1 ATGTGAT
57458941 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:57458909 original size:143 final size:141
Alignment explanation
Indices: 57458613--57459299 Score: 1019
Period size: 143 Copynumber: 4.9 Consensus size: 141
57458603 TATTTGAATA
*
57458613 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * *
57458678 TGTGATAAGGCCTAAT-GCC-GTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
*
57458741 CCGATGTGATG
131 CCAATGTGATG
* *
57458752 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * *
57458817 TATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
57458882 GGCCAATGTGATG
129 GGCCAATGTGATG
57458895 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
57458960 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAA
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
57459024 TGGCCAATGTGATG
128 TGGCCAATGTGATG
* * *
57459038 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
* * *
57459101 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAA
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
57459165 TGGCCAATGTGATG
128 TGGCCAATGTGATG
* *
57459179 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * *
57459243 ATGTGATAAGGCCGAATGGCCAATGTGATGGACGTGGAAGTGTATAAATGTGATAAG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57459300 TCCCGAAGGG
Statistics
Matches: 514, Mismatches: 25, Indels: 16
0.93 0.05 0.03
Matches are distributed among these distances:
139 58 0.11
140 2 0.00
141 211 0.41
142 2 0.00
143 238 0.46
144 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:57459177 original size:22 final size:22
Alignment explanation
Indices: 57459150--57459271 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
57459140 CATGTGTATG
57459150 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
57459172 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
57459197 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
57459219 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
57459244 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
57459266 TGTGAT
1 TGTGAT
57459272 GGACGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:57461592 original size:34 final size:33
Alignment explanation
Indices: 57461515--57461610 Score: 93
Period size: 34 Copynumber: 2.8 Consensus size: 33
57461505 TATGTTTTCA
*
57461515 TACTGTACTGAGATGGGCTAAGGCCCAGACTAC
1 TACTGTACTGAAATGGGCTAAGGCCCAGACTAC
* * * **
57461548 CACTGATACTGAAATGGGCTCAGGCCCAGATTGT
1 TACTG-TACTGAAATGGGCTAAGGCCCAGACTAC
*
57461582 TACTGCTACTGAAAGAAGGGCTAAGGCCC
1 TACTG-TACTG-AA-ATGGGCTAAGGCCC
57461611 CTAACTGAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
33 4 0.08
34 32 0.64
35 2 0.04
36 12 0.24
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (33 bp):
TACTGTACTGAAATGGGCTAAGGCCCAGACTAC
Found at i:57463844 original size:24 final size:25
Alignment explanation
Indices: 57463816--57463879 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
57463806 TCAACCAAAT
* * *
57463816 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
57463840 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
57463865 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
57463880 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:57463930 original size:24 final size:24
Alignment explanation
Indices: 57463903--57463952 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
57463893 CATGCATCGA
*
57463903 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
57463927 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
57463951 CA
1 CA
57463953 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Done.