Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 183 of 325
Found at i:57794083 original size:31 final size:31
Alignment explanation
Indices: 57793985--57794101 Score: 119
Period size: 31 Copynumber: 3.5 Consensus size: 31
57793975 TTGCATTCAC
* *
57793985 ATTCTGATTTTTTATTCTGTTACCTGATAT-TG
1 ATTCTGA-TTTTGATTCTGTTACCTAAT-TCTG
57794017 ATTCTGATTTTGATTCTGTTACCGAATATTGATTCTG
1 ATTCTGATTTTGATTCTGTTACC---TA---ATTCTG
*
57794054 ATTCTGATTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTAATTCTG
*
57794085 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
57794102 AGTTCTGATA
Statistics
Matches: 74, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
31 37 0.50
32 7 0.09
34 3 0.04
36 1 0.01
37 26 0.35
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATTCTG
Found at i:57794108 original size:37 final size:37
Alignment explanation
Indices: 57794015--57794099 Score: 136
Period size: 37 Copynumber: 2.3 Consensus size: 37
57794005 TACCTGATAT
*
57794015 TGATTCTGATTTTGATTCTGTTACCGAATATTGATTC
1 TGATTCTGATTTTGATTCTGTCACCGAATATTGATTC
*
57794052 TGATTCTGATTTTGATTCTGTCACCTAAT-TCTGATTC
1 TGATTCTGATTTTGATTCTGTCACCGAATAT-TGATTC
57794089 TGATTCTGATT
1 TGATTCTGATT
57794100 CTAGTTCTGA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
36 1 0.02
37 44 0.98
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.49
Consensus pattern (37 bp):
TGATTCTGATTTTGATTCTGTCACCGAATATTGATTC
Found at i:57797794 original size:18 final size:18
Alignment explanation
Indices: 57797771--57797805 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
57797761 GTCGTGTTGG
57797771 CCACACAGGCATGTGGGC
1 CCACACAGGCATGTGGGC
57797789 CCACACAGGCATGTGGG
1 CCACACAGGCATGTGGG
57797806 ATTTTTGGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.31, G:0.34, T:0.11
Consensus pattern (18 bp):
CCACACAGGCATGTGGGC
Found at i:57801782 original size:25 final size:26
Alignment explanation
Indices: 57801754--57801807 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
57801744 TAATTAGTAT
*
57801754 AAAATATT-AATAATTCAAT-AAATTG
1 AAAA-ATTAAATAATTAAATAAAATTG
57801779 AAAAATTAAATAATTAAATAAAATTG
1 AAAAATTAAATAATTAAATAAAATTG
57801805 AAA
1 AAA
57801808 TTTAGGATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 3 0.12
25 14 0.54
26 9 0.35
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (26 bp):
AAAAATTAAATAATTAAATAAAATTG
Found at i:57805731 original size:22 final size:22
Alignment explanation
Indices: 57805705--57805748 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
57805695 GAAAATGATC
*
57805705 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
*
57805727 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
57805749 GTTAATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:57813796 original size:15 final size:17
Alignment explanation
Indices: 57813766--57813797 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
57813756 TTGATACTTG
57813766 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
57813783 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
57813798 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:57813862 original size:29 final size:29
Alignment explanation
Indices: 57813817--57813875 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
57813807 ATAGTAAATA
57813817 TGTTAAGTGTTACTAATGAGTGATATGAT
1 TGTTAAGTGTTACTAATGAGTGATATGAT
*
57813846 TGTTAAGTGTTAGTAATGAGTGATATGAT
1 TGTTAAGTGTTACTAATGAGTGATATGAT
57813875 T
1 T
57813876 TAGCCTCGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.02, G:0.25, T:0.42
Consensus pattern (29 bp):
TGTTAAGTGTTACTAATGAGTGATATGAT
Found at i:57826458 original size:28 final size:28
Alignment explanation
Indices: 57826413--57826536 Score: 112
Period size: 28 Copynumber: 4.4 Consensus size: 28
57826403 ACATACATGC
57826413 ATATGGCCCA-CTAGGCCCAATCTCATTT
1 ATATGGCCCATC-AGGCCCAATCTCATTT
57826441 ATATGGCCCATCCA-GCCCAA--TCATGTT
1 ATATGGCCCAT-CAGGCCCAATCTCAT-TT
* *
57826468 CATATGGCCCATCAGGCCCAATTCACATTC
1 -ATATGGCCCATCAGGCCCAA-TCTCATTT
* * * * *
57826498 CTATGGCCTATTAGGCCCAATTTCCTTT
1 ATATGGCCCATCAGGCCCAATCTCATTT
57826526 ATATGGCCCAT
1 ATATGGCCCAT
57826537 TTAGTCCAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
26 4 0.05
27 4 0.05
28 46 0.60
29 18 0.23
30 2 0.03
31 3 0.04
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (28 bp):
ATATGGCCCATCAGGCCCAATCTCATTT
Found at i:57826662 original size:18 final size:19
Alignment explanation
Indices: 57826625--57826660 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
57826615 ATGGCCCAAC
57826625 AGCCCA-TCGGGCCCATTT
1 AGCCCATTCGGGCCCATTT
*
57826643 AGCCCATTCTGGCCCATT
1 AGCCCATTCGGGCCCATT
57826661 AGGCCATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.17, C:0.39, G:0.19, T:0.25
Consensus pattern (19 bp):
AGCCCATTCGGGCCCATTT
Found at i:57826795 original size:16 final size:16
Alignment explanation
Indices: 57826774--57826810 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
57826764 AAACTTTGGG
57826774 CTTTTCGGCATTTTGA
1 CTTTTCGGCATTTTGA
*
57826790 CTTTTCGGCATTTTGG
1 CTTTTCGGCATTTTGA
57826806 CTTTT
1 CTTTT
57826811 GCCGATCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.19, G:0.19, T:0.54
Consensus pattern (16 bp):
CTTTTCGGCATTTTGA
Found at i:57840378 original size:46 final size:48
Alignment explanation
Indices: 57840326--57840452 Score: 161
Period size: 48 Copynumber: 2.7 Consensus size: 48
57840316 AAGCTGACGC
* * *
57840326 CATGTCCTAGACATGTCTTACACTAGCTCTCAT-T-TCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATATCTCAAGGCCGATG
* * * *
57840372 CATGTCCCAAACATGTCTTACAATGGCT-TAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATATCTCAAGGCCGATG
57840420 CATGTCCCAGACATGTCTTACACTGGCTCTCAT
1 CATGTCCCAGACATGTCTTACACTGGCTCTCAT
57840453 GTTGTGGCTG
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 26 0.39
47 1 0.01
48 38 0.57
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATATCTCAAGGCCGATG
Found at i:57841898 original size:43 final size:42
Alignment explanation
Indices: 57841850--57841944 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
57841840 CACAAATGTA
* * * *
57841850 GTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGACAGG
1 GTCTTACATGAAACCAAACAT-AATGCCAATGTCCCAGACAGG
* * * *
57841893 GTCTTACACGAAACCAGATATAATGCCAATGTCCCAGACATG
1 GTCTTACATGAAACCAAACATAATGCCAATGTCCCAGACAGG
57841935 GTCTTACATG
1 GTCTTACATG
57841945 CAAAATTGAT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
GTCTTACATGAAACCAAACATAATGCCAATGTCCCAGACAGG
Found at i:57849982 original size:49 final size:49
Alignment explanation
Indices: 57849903--57850028 Score: 162
Period size: 49 Copynumber: 2.6 Consensus size: 49
57849893 AGATGTCGAC
* *
57849903 GCCATGTCCTAGACATAGTCTTACACTGGCTTTCATATAGCGAGGCTGAT
1 GCCATGTCCCAGACA-AGTCTTACACTGGCTCTCATATAGCGAGGCTGAT
* * * * *
57849953 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGGGTTGAT
1 GCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATAGCGAGGCTGAT
* *
57850002 GCCATGTCCCAAACAAATCTTACACTG
1 GCCATGTCCCAGACAAGTCTTACACTG
57850029 ACACACCACA
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 52 0.79
50 14 0.21
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (49 bp):
GCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATAGCGAGGCTGAT
Found at i:57851738 original size:48 final size:46
Alignment explanation
Indices: 57851668--57851927 Score: 154
Period size: 48 Copynumber: 5.5 Consensus size: 46
57851658 AAGCTGACGC
* *
57851668 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGCCGATG
1 CATGT-CCAAACATGTCTTACACTAGCTTG-ATATCACGAGGCCGATG
* * * *
57851716 CATATACCAAACATGTCTTACACTAGCTCTCG-TCTCA--ATGCTGATG
1 CATGT-CCAAACATGTCTTACACTAGCT-T-GATATCACGAGGCCGATG
* * * *
57851762 CATGTTCAAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCAA-ACATGTCTTACACTAGCTT-GATATCACGAGGCCGATG
* * * * * * *
57851810 CATGTCCTAGACATGTCTTACACTGGCTCTCAT-GC-TGTGGCTGATG
1 CATGTCC-AAACATGTCTTACACTAGCT-TGATATCACGAGGCCGATG
* * * * **
57851856 CATGTCCTAGACATGTCTTACACTGGCTTAAATATTTA-GAGGCCGACA
1 CATGTCC-AAACATGTCTTACACTAGCTT-GATA-TCACGAGGCCGATG
57851904 CATGTCCCAAACATGTCTTACACT
1 CATGT-CCAAACATGTCTTACACT
57851928 GGCTCTCATG
Statistics
Matches: 168, Mismatches: 31, Indels: 26
0.75 0.14 0.12
Matches are distributed among these distances:
45 5 0.03
46 69 0.41
47 1 0.01
48 87 0.52
49 5 0.03
50 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCAAACATGTCTTACACTAGCTTGATATCACGAGGCCGATG
Found at i:57851778 original size:46 final size:45
Alignment explanation
Indices: 57851726--57851973 Score: 171
Period size: 46 Copynumber: 5.3 Consensus size: 45
57851716 CATATACCAA
* * * *
57851726 ACATGTCTTACACTAGCTCTCGTCTCAATGCTGATGCATGTTCAAG
1 ACATGTCTTACACTGGCTCTCATCTC-ATGCTGATGCATGTCCTAG
* * *
57851772 ACATGTCTTACACTGGCT-TAAATATCTCGAGGCCGATGCATGTCCTAG
1 ACATGTCTTACACTGGCTCT---CATCTC-ATGCTGATGCATGTCCTAG
*
57851820 ACATGTCTTACACTGGCTCTCATGCT-GTGGCTGATGCATGTCCTAG
1 ACATGTCTTACACTGGCTCTCAT-CTCAT-GCTGATGCATGTCCTAG
* * * * * ** * *
57851866 ACATGTCTTACACTGGCT-TAAATATTTAGAGGCCGACACATGTCCCAA
1 ACATGTCTTACACTGGCTCT---CATCT-CATGCTGATGCATGTCCTAG
** *
57851914 ACATGTCTTACACTGGCTCTCATGCT-ATGGCTGACACATGTCCCAG
1 ACATGTCTTACACTGGCTCTCAT-CTCAT-GCTGATGCATGTCCTAG
57851960 ACATGTCTTACACT
1 ACATGTCTTACACT
57851974 AGCACACATA
Statistics
Matches: 162, Mismatches: 26, Indels: 28
0.75 0.12 0.13
Matches are distributed among these distances:
45 3 0.02
46 84 0.52
47 4 0.02
48 69 0.43
49 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (45 bp):
ACATGTCTTACACTGGCTCTCATCTCATGCTGATGCATGTCCTAG
Found at i:57851829 original size:94 final size:93
Alignment explanation
Indices: 57851668--57851973 Score: 373
Period size: 94 Copynumber: 3.3 Consensus size: 93
57851658 AAGCTGACGC
* * * ** * *
57851668 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGCCGATGCATATACCAAACATGTC
1 CATGTCCAAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGT-CCAAACATGTC
* *
57851733 TTACACTAGCTCTCGT-CTCAAT-GCTGATG
65 TTACACTGGCTCTCATGCT--ATGGCTGATG
* *
57851762 CATGTTCAAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCTAGACATGTC
1 CATGTCCAAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCC-AAACATGTC
*
57851827 TTACACTGGCTCTCATGCTGTGGCTGATG
65 TTACACTGGCTCTCATGCTATGGCTGATG
* * * **
57851856 CATGTCCTAGACATGTCTTACACTGGCTTAAATATTTAGAGGCCGACACATGTCCCAAACATGTC
1 CATGTCCAAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGT-CCAAACATGTC
**
57851921 TTACACTGGCTCTCATGCTATGGCTGACA
65 TTACACTGGCTCTCATGCTATGGCTGATG
*
57851950 CATGTCCCAGACATGTCTTACACT
1 CATGTCCAAGACATGTCTTACACT
57851974 AGCACACATA
Statistics
Matches: 185, Mismatches: 23, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
93 3 0.02
94 178 0.96
95 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (93 bp):
CATGTCCAAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCAAACATGTCT
TACACTGGCTCTCATGCTATGGCTGATG
Found at i:57851928 original size:48 final size:47
Alignment explanation
Indices: 57851770--57851973 Score: 191
Period size: 46 Copynumber: 4.3 Consensus size: 47
57851760 TGCATGTTCA
* * ** *
57851770 AGACATGTCTTACACTGGCT-TAAATATCTCGAGGCCGATGCATGTCCT
1 AGACATGTCTTACACTGGCTCT-AAT-GCTAGAGGCCGACACATGTCCC
* * * ** *
57851818 AGACATGTCTTACACTGGCTCTCATGCT-GTGGCTGATGCATGTCCT
1 AGACATGTCTTACACTGGCTCTAATGCTAGAGGCCGACACATGTCCC
**
57851864 AGACATGTCTTACACTGGCT-TAAATATTTAGAGGCCGACACATGTCCC
1 AGACATGTCTTACACTGGCTCT-AAT-GCTAGAGGCCGACACATGTCCC
* * * *
57851912 AAACATGTCTTACACTGGCTCTCATGCTA-TGGCTGACACATGTCCC
1 AGACATGTCTTACACTGGCTCTAATGCTAGAGGCCGACACATGTCCC
57851958 AGACATGTCTTACACT
1 AGACATGTCTTACACT
57851974 AGCACACATA
Statistics
Matches: 132, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.52
47 5 0.04
48 56 0.42
49 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (47 bp):
AGACATGTCTTACACTGGCTCTAATGCTAGAGGCCGACACATGTCCC
Found at i:57851972 original size:22 final size:22
Alignment explanation
Indices: 57851901--57851972 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
57851891 TTAGAGGCCG
*
57851901 ACACATGTCCCAAACATGTCTT
1 ACACATGTCCCAGACATGTCTT
* * *
57851923 ACAC-TGGCTCTCATG-CTATGGCTG
1 ACACAT-G-TCCCA-GAC-ATGTCTT
57851947 ACACATGTCCCAGACATGTCTT
1 ACACATGTCCCAGACATGTCTT
57851969 ACAC
1 ACAC
57851973 TAGCACACAT
Statistics
Matches: 37, Mismatches: 7, Indels: 12
0.66 0.12 0.21
Matches are distributed among these distances:
21 1 0.03
22 15 0.41
23 10 0.27
24 10 0.27
25 1 0.03
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (22 bp):
ACACATGTCCCAGACATGTCTT
Found at i:57854971 original size:42 final size:42
Alignment explanation
Indices: 57854870--57854976 Score: 97
Period size: 42 Copynumber: 2.5 Consensus size: 42
57854860 ACATCGATGT
* * * * * **
57854870 CATATCCCAGATATGGTCTTATACGAAATTTCATTTCGATGC
1 CATATCCCAAATATGGTCTTATACAAAATCTCATATCAACAC
* * ** *
57854912 CATGTCCCATACGTGGTCTTATGCAAAATCTCATATCAACAC
1 CATATCCCAAATATGGTCTTATACAAAATCTCATATCAACAC
*
57854954 CATATCCCAAATATGGTCCTATA
1 CATATCCCAAATATGGTCTTATA
57854977 TGATAACACA
Statistics
Matches: 48, Mismatches: 17, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (42 bp):
CATATCCCAAATATGGTCTTATACAAAATCTCATATCAACAC
Found at i:57858418 original size:16 final size:19
Alignment explanation
Indices: 57858381--57858417 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
57858371 TGAAACAAAC
57858381 ATATAT-AATATTTATATA
1 ATATATAAATATTTATATA
*
57858399 ATATATAAATATTTTTATA
1 ATATATAAATATTTATATA
57858418 TTTAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATATATAAATATTTATATA
Found at i:57862509 original size:24 final size:24
Alignment explanation
Indices: 57862481--57862526 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
57862471 AATCAAACGG
57862481 TATGAATTGCCTGAGACAAACTTA
1 TATGAATTGCCTGAGACAAACTTA
57862505 TATGAATTGCCTGAGACAAACT
1 TATGAATTGCCTGAGACAAACT
57862527 AAGTATGCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (24 bp):
TATGAATTGCCTGAGACAAACTTA
Found at i:57865543 original size:40 final size:40
Alignment explanation
Indices: 57865485--57865577 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 40
57865475 TCAGTATCGT
*
57865485 ACACTTAGTGCCACATATAGCCGAAGCTAT-TCCAATTA-GC
1 ACACTAAGTGCCACATATAGCCGAAGCTATCTCCAA--ACGC
* * *
57865525 ACACTAAGTGCTATATATAGCCGAAGCTATCTCGAAACGC
1 ACACTAAGTGCCACATATAGCCGAAGCTATCTCCAAACGC
57865565 ACACTAAGTGCCA
1 ACACTAAGTGCCA
57865578 AACATAGTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.02
40 41 0.89
41 4 0.09
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (40 bp):
ACACTAAGTGCCACATATAGCCGAAGCTATCTCCAAACGC
Found at i:57866051 original size:28 final size:29
Alignment explanation
Indices: 57865987--57866052 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
57865977 TTTTCATTTA
* * *
57865987 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAAATTAACCCCTCAATTGACACT
*
57866016 TTTCTCAAATTAATCCCT-AATTGACA-T
1 TTTCTCAAATTAACCCCTCAATTGACACT
57866043 TTTCGTCAAA
1 TTTC-TCAAA
57866053 AAACACTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 5 0.16
28 12 0.38
29 15 0.47
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (29 bp):
TTTCTCAAATTAACCCCTCAATTGACACT
Found at i:57870101 original size:30 final size:30
Alignment explanation
Indices: 57870067--57870127 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
57870057 TCCTTAACTC
57870067 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * *
57870097 AAACTTTTGCATATTTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
57870127 A
1 A
57870128 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:57873558 original size:11 final size:11
Alignment explanation
Indices: 57873522--57873577 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
57873512 CATGGTATGT
57873522 ATGATATGCAC
1 ATGATATGCAC
* *
57873533 ATGACATG--T
1 ATGATATGCAC
57873542 ATGATATGCAC
1 ATGATATGCAC
*
57873553 ATGATATG--T
1 ATGATATGCAC
57873562 ATGATATGCAC
1 ATGATATGCAC
57873573 ATGAT
1 ATGAT
57873578 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:57873577 original size:20 final size:20
Alignment explanation
Indices: 57873511--57873577 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
57873501 ATTTTGATAA
*
57873511 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
57873531 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
57873551 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
57873571 ACATGAT
1 ACATGAT
57873578 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:57873659 original size:24 final size:24
Alignment explanation
Indices: 57873627--57873792 Score: 212
Period size: 24 Copynumber: 7.0 Consensus size: 24
57873617 GAGGAAGTGC
*
57873627 AAAAGGGCTTATACCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
57873651 AAAAGGGCTTATGCCCGAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
57873675 -AAAGGGCTTATGCTCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
57873698 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
57873722 -AAAGGGCTTATGCACCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
57873745 AAAAGGGCTTTTGCCCTAGTTACT
1 AAAAGGGCTTATGCCCCAGTTATT
*
57873769 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
57873793 ACGATAAAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
23 42 0.34
24 71 0.58
25 9 0.07
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:57873697 original size:47 final size:47
Alignment explanation
Indices: 57873628--57873771 Score: 234
Period size: 47 Copynumber: 3.1 Consensus size: 47
57873618 AGGAAGTGCA
* * *
57873628 AAAGGGCTTATACCCCAGTTATTAAAAGGGCTTATGCCCGAGTTATT
1 AAAGGGCTTATGCACCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
*
57873675 AAAGGGCTTATGCTCCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCACCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
* *
57873722 AAAGGGCTTATGCACCAGTTATTAAAAGGGCTTTTGCCCTAGTTACT
1 AAAGGGCTTATGCACCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
57873769 AAA
1 AAA
57873772 AGAGGCTAGG
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (47 bp):
AAAGGGCTTATGCACCAGTTATTAAAAGGGCTTATGCCCTAGTTATT
Found at i:57874011 original size:24 final size:24
Alignment explanation
Indices: 57873984--57874033 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
57873974 CGTTTACAGT
57873984 AAAGGCTTCGGCCCAGTAATATGA
1 AAAGGCTTCGGCCCAGTAATATGA
**
57874008 AAAGGCTTCGGCCCAGTGTTATGA
1 AAAGGCTTCGGCCCAGTAATATGA
57874032 AA
1 AA
57874034 TATGAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (24 bp):
AAAGGCTTCGGCCCAGTAATATGA
Found at i:57879497 original size:47 final size:47
Alignment explanation
Indices: 57879439--57879788 Score: 583
Period size: 47 Copynumber: 7.4 Consensus size: 47
57879429 CAGCCAAGAC
57879439 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
57879486 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
57879533 AGTGTATATATATGTGATACGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
57879582 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
57879629 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
57879676 GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
57879723 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
57879770 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
57879789 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
47 239 0.84
49 46 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:57880006 original size:37 final size:37
Alignment explanation
Indices: 57879905--57880006 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
57879895 CCGAGCTCTA
*
57879905 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
57879942 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
57879979 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
57880007 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:57881973 original size:40 final size:39
Alignment explanation
Indices: 57881916--57882173 Score: 304
Period size: 40 Copynumber: 6.5 Consensus size: 39
57881906 CGGATGATAA
* * *
57881916 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-TT
*
57881956 CTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAT-T
* * *
57881996 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-TT
*
57882036 CCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAT-T
* *
57882076 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-TT
* * *
57882116 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTAT-T
* *
57882156 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
57882174 TACCTGGCTT
Statistics
Matches: 191, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
39 16 0.08
40 175 0.92
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATT
Found at i:57882049 original size:80 final size:80
Alignment explanation
Indices: 57881916--57882173 Score: 376
Period size: 80 Copynumber: 3.2 Consensus size: 80
57881906 CGGATGATAA
* * * * *
57881916 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGATCCGGGCTAAGTCCCGAAGGCATTTG
57881981 TGCAAGTTACTATAT
66 TGCAAGTTACTATAT
* *
57881996 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGATCCGGGCTAAGTCCCGAAGGCATTTG
57882061 TGCAAGTTACTATAT
66 TGCAAGTTACTATAT
* * *
57882076 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTATGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGATCCGGGCTAAGTCCCGAAGGCATTTG
*
57882141 AGCAAG-TAGCTATAT
66 TGCAAGTTA-CTATAT
* *
57882156 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
57882174 TACCTGGCTT
Statistics
Matches: 162, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 16 0.10
80 146 0.90
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGTTACTATAT
Found at i:57882129 original size:120 final size:120
Alignment explanation
Indices: 57881916--57882173 Score: 351
Period size: 120 Copynumber: 2.2 Consensus size: 120
57881906 CGGATGATAA
* * *
57881916 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
* * * * *
57881981 TGCAAGTTACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAGAT
66 TGCAAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAGCAAG-TAGCTAGAT
* *
57882036 CCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
* * *
57882100 GTGCGAGTTACTACATCCGGGCTATGTCCCGAAGGCATTCGAGCAAGTAGCTATAT
65 GTGCAAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAGCAAGTAGCTAGAT
*
57882156 CC-GGTTAAATCCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
57882174 TACCTGGCTT
Statistics
Matches: 122, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
119 18 0.15
120 104 0.85
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (120 bp):
CCGGGTTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAGCAAGTAGCTAGAT
Found at i:57889984 original size:40 final size:40
Alignment explanation
Indices: 57889929--57890185 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
57889919 CGGATGATAA
** * *
57889929 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
57889969 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
57890009 TCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57890048 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57890088 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
57890128 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
57890168 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
57890186 TACCTGGCTT
Statistics
Matches: 198, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 54 0.27
40 144 0.73
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:57890072 original size:79 final size:80
Alignment explanation
Indices: 57889930--57890185 Score: 340
Period size: 79 Copynumber: 3.2 Consensus size: 80
57889920 GGATGATAAC
** * *
57889930 CGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTTG
57889994 TGCGAGTTACTATATT
65 TGCGAGTTACTATATT
* *
57890010 CGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
57890074 GCGAGTTACTATATC
66 GCGAGTTACTATATT
* * * *
57890089 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTATGTCCCGAAGGCATTCGA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
57890154 GCGAG-TAGCTATA-T
66 GCGAGTTA-CTATATT
* * *
57890168 CCGGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
57890186 TACCTGGCTT
Statistics
Matches: 156, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 87 0.56
80 68 0.44
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATATT
Found at i:57890174 original size:119 final size:119
Alignment explanation
Indices: 57889929--57890185 Score: 358
Period size: 119 Copynumber: 2.2 Consensus size: 119
57889919 CGGATGATAA
* *
57889929 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCATTTGCACGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
* * * * *
57889994 TGCGAGTTACTATATTCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
66 TGCGAGTTACTACATCCGGGCTAAGTCCGAAGGCATTCGAGCGAGTTACTATAT
** *
57890048 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCATTTGCACGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
*
57890112 GTGCGAGTTACTACATCCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
65 GTGCGAGTTACTACATCCGGGCTAAGT-CCGAAGGCATTCGAGCGAGTTA-CTATAT
*
57890168 CC-GGTTAAATCCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
57890186 TACCTGGCTT
Statistics
Matches: 123, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
118 1 0.01
119 97 0.79
120 25 0.20
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGTTAAGTCCCGAAGGCATTTGCACGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTACATCCGGGCTAAGTCCGAAGGCATTCGAGCGAGTTACTATAT
Found at i:57896816 original size:11 final size:11
Alignment explanation
Indices: 57896778--57896833 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
57896768 CATGGTATGT
57896778 ATGATATGCAC
1 ATGATATGCAC
* *
57896789 ATGACATGTA-
1 ATGATATGCAC
57896799 A-GATATGCAC
1 ATGATATGCAC
*
57896809 ATGATATG--T
1 ATGATATGCAC
57896818 ATGATATGCAC
1 ATGATATGCAC
57896829 ATGAT
1 ATGAT
57896834 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:57896833 original size:20 final size:20
Alignment explanation
Indices: 57896767--57896833 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
57896757 ATTTTGATAA
*
57896767 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
57896787 ACATGACATGTAAGATATGC
1 ACATGATATGTATGATATGC
57896807 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
57896827 ACATGAT
1 ACATGAT
57896834 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:57896951 original size:46 final size:47
Alignment explanation
Indices: 57896884--57896979 Score: 167
Period size: 47 Copynumber: 2.1 Consensus size: 47
57896874 AGGAAGTGCA
*
57896884 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTACT
*
57896930 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTACT
57896977 AAA
1 AAA
57896980 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 23 0.49
47 24 0.51
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTACT
Found at i:57896962 original size:24 final size:24
Alignment explanation
Indices: 57896883--57897000 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
57896873 GAGGAAGTGC
57896883 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
57896907 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
57896930 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
57896953 AAAAGGGCTTTTGCCCCAGTTACT
1 AAAAGGGCTTATGCCCCAGTTATT
*
57896977 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
57897001 ACGATAAAGC
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 46 0.53
24 30 0.35
25 10 0.12
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:57897227 original size:31 final size:31
Alignment explanation
Indices: 57897192--57897256 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
57897182 CGTTTACAGT
57897192 AAAAGGCTTCGGCCCAGTAAT-ATGAAATATG
1 AAAAGGCTTCGGCCCAGT-ATCATGAAATATG
*
57897223 AAAAGGCTTCGGCCCAGTGTCATGAAATATG
1 AAAAGGCTTCGGCCCAGTATCATGAAATATG
57897254 AAA
1 AAA
57897257 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 31 0.97
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTATCATGAAATATG
Found at i:57899262 original size:5 final size:5
Alignment explanation
Indices: 57899252--57899276 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
57899242 GATGCCAACC
57899252 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
57899277 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:57903055 original size:21 final size:21
Alignment explanation
Indices: 57903031--57903102 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
57903021 CTTTCTGAAA
57903031 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* *
57903052 TGAAA-G-ATACCATGACAACATGAT
1 TGAAATGTGTA--A-GAC--CATGGT
57903076 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
57903098 TGAAA
1 TGAAA
57903103 GATACCATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 11 0.28
22 8 0.21
24 8 0.21
25 6 0.15
26 1 0.03
27 2 0.05
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:57903082 original size:46 final size:46
Alignment explanation
Indices: 57903030--57903197 Score: 255
Period size: 46 Copynumber: 3.7 Consensus size: 46
57903020 GCTTTCTGAA
*
57903030 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
57903076 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGTT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
57903122 ATGACATGTGTAAGACCATGGTTAAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
***
57903168 ATGAAATGAACAAGACCATGGTTGAAAGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGAT
57903198 GTAACACCCC
Statistics
Matches: 110, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 110 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:57904565 original size:46 final size:45
Alignment explanation
Indices: 57904498--57904672 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
57904488 TGTAACCCGC
*
57904498 CCATAAGTGAACTCAAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
57904544 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
57904590 ACATCTCTCGAACTCGAACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGAACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
57904637 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG
57904673 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 67 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:57904615 original size:93 final size:93
Alignment explanation
Indices: 57904506--57904676 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
57904496 GCCCATAAGT
* * *
57904506 GAACTCAAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57904571 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
57904599 GAACTCGAACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57904664 CGAGTTCGGATGC
66 CGAGCTCGGATGC
57904677 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCAAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:57904692 original size:46 final size:45
Alignment explanation
Indices: 57904549--57904692 Score: 111
Period size: 46 Copynumber: 3.1 Consensus size: 45
57904539 CGCATCCATA
*
57904549 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* * * *
57904598 --CGAACTCGAACTCAACTCAACGAGTTC--A-GACATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
57904641 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
57904688 AGTGA
1 AGTGA
57904693 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 2 0.03
45 1 0.01
46 30 0.39
47 25 0.33
48 6 0.08
49 2 0.03
50 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:57906424 original size:30 final size:30
Alignment explanation
Indices: 57906380--57906469 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
57906370 CAAAGATAAC
57906380 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
57906409 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
57906439 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
57906469 A
1 A
57906470 GATACTATGC
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 40 0.78
31 2 0.04
ACGTcount: A:0.58, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:57906428 original size:15 final size:15
Alignment explanation
Indices: 57906380--57906459 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
57906370 CAAAGATAAC
*
57906380 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
57906394 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
57906409 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
57906424 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
57906439 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
57906454 AAGAAA
1 AAGAAA
57906460 CCCAAGATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:57906468 original size:15 final size:15
Alignment explanation
Indices: 57906391--57906469 Score: 81
Period size: 15 Copynumber: 5.3 Consensus size: 15
57906381 AGAAAACCGA
57906391 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
57906406 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
57906420 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
57906435 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
57906451 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
57906466 ATAA
1 ATAA
57906470 GATACTATGC
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 46 0.87
16 3 0.06
ACGTcount: A:0.57, C:0.15, G:0.16, T:0.11
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:57909440 original size:46 final size:46
Alignment explanation
Indices: 57909373--57909550 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
57909363 TGTAACCCGC
* *
57909373 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* * * *
57909419 CCATAAGTGAACTCGGACTCAACTCAACGAGGTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* *** * * **
57909465 ACATCTCTCGAACTCGGACTTAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
57909512 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
57909551 CTCAACCATC
Statistics
Matches: 104, Mismatches: 25, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
46 71 0.68
47 33 0.32
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:57909540 original size:93 final size:93
Alignment explanation
Indices: 57909381--57909551 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
57909371 GCCCATAAGT
* ***
57909381 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57909446 CGAGGTCGGATGCCTAGTTACATCTCTC
66 CGAGGTCGGATGCCTAGTTACATCTCTC
* *
57909474 GAACTCGGACTTAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57909539 CGAGTTCGGATGC
66 CGAGGTCGGATGC
57909552 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGGTCGGATGCCTAGTTACATCTCTC
Found at i:57910237 original size:46 final size:46
Alignment explanation
Indices: 57910162--57910319 Score: 210
Period size: 46 Copynumber: 3.4 Consensus size: 46
57910152 GGATATTACA
*
57910162 AAAGATACCATGGCAACATGAC-TGGAAATGAATAAGACCATTGTTG
1 AAAGATACCATGGCAACATGACAT-GAAATGAATAAGACCATAGTTG
* * * *
57910208 AAAGATACCATGGCAACGTGACATAAAATGAACAAGACCATGGTTG
1 AAAGATACCATGGCAACATGACATGAAATGAATAAGACCATAGTTG
* *
57910254 AAAGATACCATGGCAACATGACAGGAAATGAGTAAGACCATAGTTG
1 AAAGATACCATGGCAACATGACATGAAATGAATAAGACCATAGTTG
* * *
57910300 AAAGACACTATGGCATCATG
1 AAAGATACCATGGCAACATG
57910320 TCAAAGATAA
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
46 97 0.99
47 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.19
Consensus pattern (46 bp):
AAAGATACCATGGCAACATGACATGAAATGAATAAGACCATAGTTG
Found at i:57915432 original size:46 final size:46
Alignment explanation
Indices: 57915364--57915683 Score: 478
Period size: 46 Copynumber: 7.0 Consensus size: 46
57915354 GCTTTCTGAA
** * * *
57915364 ATGAAATGTGTAAGACCGTGGTTGGAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
**
57915410 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
57915456 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
57915502 AGGAAATGAATAAGACCATGGTTGAAAGATACCAAGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
57915548 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
57915594 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * * *
57915640 AAGAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
57915684 TCAAAGATAA
Statistics
Matches: 255, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 255 1.00
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:57929706 original size:27 final size:27
Alignment explanation
Indices: 57929666--57929777 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
57929656 CGGAAGCGTC
*
57929666 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
57929693 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
57929720 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
57929748 CTGGTGACTTTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
57929774 CTGG
1 CTGG
57929778 CAGCCATGTT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.66
28 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:57929772 original size:54 final size:54
Alignment explanation
Indices: 57929666--57929777 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
57929656 CGGAAGCGTC
* *
57929666 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
57929720 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTTTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
57929774 CTGG
1 CTGG
57929778 CAGCCATGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:57937818 original size:12 final size:13
Alignment explanation
Indices: 57937790--57937822 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
57937780 TTTATTTCTT
57937790 TTCTCCATCTACC
1 TTCTCCATCTACC
*
57937803 TTCTCC-TCTTCC
1 TTCTCCATCTACC
57937815 TTCTCCAT
1 TTCTCCAT
57937823 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:57938926 original size:26 final size:27
Alignment explanation
Indices: 57938871--57938933 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
57938861 ATTTACTAGA
*
57938871 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATG-ATGCAAAATGACCATT
* *
57938899 ATACCCCTATG-TGCTAAATGACCTTT
1 ATACCCCTATGATGCAAAATGACCATT
57938925 ATACCCCTA
1 ATACCCCTA
57938934 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 21 0.66
28 11 0.34
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.32
Consensus pattern (27 bp):
ATACCCCTATGATGCAAAATGACCATT
Found at i:57939097 original size:27 final size:27
Alignment explanation
Indices: 57939039--57939129 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 27
57939029 AGGAAGCGTC
57939039 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
57939067 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
57939094 CTGGTGGCACTAACCACAAAATATCTGTAT
1 CTGGTGGCACT-GCCAC-AAATATCTGT-T
57939124 CTGGTG
1 CTGGTG
57939130 ACTCAGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
27 18 0.33
28 20 0.37
29 9 0.17
30 7 0.13
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:57939129 original size:30 final size:28
Alignment explanation
Indices: 57939051--57939129 Score: 97
Period size: 27 Copynumber: 2.8 Consensus size: 28
57939041 GGTGGCTATG
* * *
57939051 CCACAAATTATCTGTTCTGGTGGCCCTG
1 CCACAAAATATCTGTTCTGGTGGCACTA
*
57939079 CCAC-ATATATCTGTTCTGGTGGCACTAA
1 CCACAAAATATCTGTTCTGGTGGCACT-A
57939107 CCACAAAATATCTGTATCTGGTG
1 CCACAAAATATCTGT-TCTGGTG
57939130 ACTCAGTCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
27 19 0.44
28 8 0.19
29 9 0.21
30 7 0.16
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGGCACTA
Found at i:57940424 original size:27 final size:28
Alignment explanation
Indices: 57940357--57940439 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
57940347 AGGAAGCGTC
* *
57940357 CTTGGTGGGCTATGCCACAATTAATCTGAT
1 CTTGGT-GGCTCTGCCACAATT-ATCTGTT
57940387 C-TGGTGGCTCTGCCACAATT-TCTGTT
1 CTTGGTGGCTCTGCCACAATTATCTGTT
*
57940413 CTTGGTGGCTCTGCCACGATTATCTGT
1 CTTGGTGGCTCTGCCACAATTATCTGT
57940440 ATCTGTGACT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
26 6 0.12
27 18 0.38
28 19 0.40
29 4 0.08
30 1 0.02
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (28 bp):
CTTGGTGGCTCTGCCACAATTATCTGTT
Found at i:57950577 original size:27 final size:27
Alignment explanation
Indices: 57950537--57950648 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
57950527 AGGAAGCGTC
*
57950537 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
57950564 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
57950591 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
57950619 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
57950645 CTGG
1 CTGG
57950649 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:57950643 original size:54 final size:54
Alignment explanation
Indices: 57950537--57950648 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
57950527 AGGAAGCGTC
* *
57950537 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
57950591 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
57950645 CTGG
1 CTGG
57950649 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:57951728 original size:11 final size:10
Alignment explanation
Indices: 57951700--57951733 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
57951690 AGCCTGTAAG
57951700 TATTCTGAAT
1 TATTCTGAAT
*
57951710 TTTTCTGAAT
1 TATTCTGAAT
57951720 ATATTCTGAAT
1 -TATTCTGAAT
57951731 TAT
1 TAT
57951734 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:57958681 original size:12 final size:13
Alignment explanation
Indices: 57958653--57958685 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
57958643 TTATTTCTTT
57958653 TTCTCCATCTACC
1 TTCTCCATCTACC
*
57958666 TTCTCC-TCTTCC
1 TTCTCCATCTACC
57958678 TTCTCCAT
1 TTCTCCAT
57958686 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:57959785 original size:28 final size:28
Alignment explanation
Indices: 57959753--57959817 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
57959743 ATTTACTAGA
*
57959753 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
57959781 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
57959809 ATACCCCTA
1 ATACCCCTA
57959818 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:57959981 original size:27 final size:27
Alignment explanation
Indices: 57959923--57960012 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
57959913 AGGAAGCGTC
57959923 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
57959951 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
57959978 CTGGTGGCACTACCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
57960007 CTGGTG
1 CTGGTG
57960013 ACTCAGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:57960500 original size:19 final size:19
Alignment explanation
Indices: 57960476--57960514 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
57960466 TTTTAATTAT
* *
57960476 TTTTATGGTTTTCTTTTAC
1 TTTTATGATTTTATTTTAC
*
57960495 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
57960514 T
1 T
57960515 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.08, G:0.05, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:57961305 original size:27 final size:27
Alignment explanation
Indices: 57961265--57961376 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
57961255 AGGAAGCGTC
*
57961265 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
57961292 CTGGTGGCTCTGCCACATATT-TCT-ATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
*
57961319 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
57961347 CTGGTGACTTTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
57961373 CTGG
1 CTGG
57961377 CAGCCATGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 9 0.12
27 47 0.64
28 17 0.23
29 1 0.01
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:57961375 original size:54 final size:54
Alignment explanation
Indices: 57961265--57961376 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
57961255 AGGAAGCGTC
* *
57961265 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * * *
57961319 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTTTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
57961373 CTGG
1 CTGG
57961377 CAGCCATGTT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:57963494 original size:18 final size:18
Alignment explanation
Indices: 57963473--57963523 Score: 50
Period size: 21 Copynumber: 2.6 Consensus size: 18
57963463 CAAGAGCCTC
57963473 AAGTATCTCCTTACCCAA
1 AAGTATCTCCTTACCCAA
57963491 AAGTAGT-TAAACCTTACCCAA
1 AAGTA-TCT---CCTTACCCAA
57963512 AAGTATCATCCT
1 AAGTATC-TCCT
57963524 GGTAAGGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 11
0.71 0.00 0.29
Matches are distributed among these distances:
18 6 0.22
19 4 0.15
20 1 0.04
21 15 0.56
22 1 0.04
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (18 bp):
AAGTATCTCCTTACCCAA
Found at i:57966910 original size:10 final size:10
Alignment explanation
Indices: 57966872--57966903 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
57966862 CCTTTCTCCC
57966872 TTTCTTTGCTT
1 TTTCTTT-CTT
57966883 TTTCTTTCTT
1 TTTCTTTCTT
57966893 TTTCTTTCTT
1 TTTCTTTCTT
57966903 T
1 T
57966904 ATTTTTCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.67
11 7 0.33
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:57966917 original size:21 final size:21
Alignment explanation
Indices: 57966872--57966917 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
57966862 CCTTTCTCCC
*
57966872 TTTCTTTGCTTTTTCTTTCTT
1 TTTCTTTGCTTTTTCTTTCTG
57966893 TTTCTTT-CTTTATT-TTTCATG
1 TTTCTTTGCTTT-TTCTTTC-TG
57966914 TTTC
1 TTTC
57966918 CACTTTCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.74
Consensus pattern (21 bp):
TTTCTTTGCTTTTTCTTTCTG
Found at i:57967008 original size:20 final size:21
Alignment explanation
Indices: 57966963--57967015 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
57966953 TAATTATTAT
* *
57966963 TATAATAAATTTATATTAATG
1 TATAATAAATATATATTAATA
57966984 T-TAATAAATATATA-TAATA
1 TATAATAAATATATATTAATA
*
57967003 TATAATATATATA
1 TATAATAAATATA
57967016 CATGGATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 5 0.18
20 22 0.79
21 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TATAATAAATATATATTAATA
Found at i:57970541 original size:39 final size:39
Alignment explanation
Indices: 57970459--57970629 Score: 236
Period size: 39 Copynumber: 4.3 Consensus size: 39
57970449 GCTACTCGTT
* * * *
57970459 CAAATGCCTTCGGGGCATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCA
57970499 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
57970538 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGA-TTAGTAACTCGCA
* * * *
57970578 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTGGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTAGTAACTCGCA
57970617 CAAATGCCTTCGG
1 CAAATGCCTTCGG
57970630 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
39 70 0.58
40 50 0.42
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
Found at i:57970562 original size:79 final size:79
Alignment explanation
Indices: 57970459--57970629 Score: 247
Period size: 79 Copynumber: 2.2 Consensus size: 79
57970449 GCTACTCGTT
* *
57970459 CAAATGCCTTCGGGGCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCG
57970523 G-ATTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* * *
57970538 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGA
* *
57970603 ATTAGTATCTGGCA
66 ATTAGTAACTCGCA
57970617 CAAATGCCTTCGG
1 CAAATGCCTTCGG
57970630 ATCTTAGTCC
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
78 9 0.11
79 72 0.87
80 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGA
ATTAGTAACTCGCA
Found at i:57970642 original size:79 final size:79
Alignment explanation
Indices: 57970459--57970682 Score: 242
Period size: 79 Copynumber: 2.8 Consensus size: 79
57970449 GCTACTCGTT
* *
57970459 CAAATGCCTTCGGGGCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
57970523 GATTAGTAACTCGCA
65 GATTAGTAACTCGCA
* * *
57970538 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
57970601 GAATTAGTATCTGGCA
65 G-ATTAGTAACTCGCA
* * ** * * *
57970617 CAAATGCCTTCGGATCTTAGTCCGGA-TATGGTCATTTAGCACAAA-GCCTTTGGGACTTAGCCC
1 CAAATGCCTTCGGA-CTTAGCCCGGATTATAGT-AACTCGCACAAATGCCTTCGGGACTTAACCC
57970680 GGA
64 GGA
57970683 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 13 0.10
79 91 0.73
80 20 0.16
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTAGTAACTCGCA
Found at i:57971878 original size:56 final size:56
Alignment explanation
Indices: 57971811--57971930 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
57971801 TATTAGTTTA
57971811 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
57971867 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
57971923 TTGCCCAT
1 TTGCCCAT
57971931 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:57972556 original size:12 final size:12
Alignment explanation
Indices: 57972541--57972573 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
57972531 TCGTGAAACT
57972541 GACCGTGTGCTA
1 GACCGTGTGCTA
57972553 GACCGTGTGCTA
1 GACCGTGTGCTA
57972565 GACCGTGTG
1 GACCGTGTG
57972574 TCACACACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.15, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GACCGTGTGCTA
Found at i:57984863 original size:27 final size:27
Alignment explanation
Indices: 57984832--57985009 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57984822 TAAATTGTAC
57984832 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
57984859 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57984885 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
57984913 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
57984941 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57984968 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
57984995 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57985010 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:57984946 original size:82 final size:81
Alignment explanation
Indices: 57984833--57984988 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57984823 AAATTGTACA
* *
57984833 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
57984897 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
57984914 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
57984979 TGCGAGTTGA
65 TGCGAATTGA
57984989 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57985000 original size:82 final size:81
Alignment explanation
Indices: 57984829--57985009 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
57984819 GATTAAATTG
* *
57984829 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
57984894 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
57984910 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
57984974 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57984992 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57985010 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:57993049 original size:27 final size:27
Alignment explanation
Indices: 57993018--57993195 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57993008 TAAATTGTAC
57993018 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
57993045 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57993071 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
57993099 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
57993127 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57993154 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
57993181 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57993196 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:57993132 original size:82 final size:81
Alignment explanation
Indices: 57993019--57993174 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57993009 AAATTGTACA
* *
57993019 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
57993083 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
57993100 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
57993165 TGCGAGTTGA
65 TGCGAATTGA
57993175 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57993186 original size:82 final size:81
Alignment explanation
Indices: 57993015--57993195 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
57993005 GATTAAATTG
* *
57993015 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
57993080 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
57993096 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
57993160 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57993178 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57993196 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:58002266 original size:79 final size:80
Alignment explanation
Indices: 58002098--58002279 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 80
58002088 GCTACTCGTT
* **
58002098 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
58002162 AATTTAGTAACTCGCAC
64 AATATAGTAACTAGCAC
* ** **
58002179 CAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAA
* *
58002242 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
58002258 CAAAGCCTTCGGGACTTAGCCC
1 CAAAGCCTTCGGGACTTAGCCC
58002280 GGACATTATT
Statistics
Matches: 84, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
78 3 0.04
79 55 0.65
80 23 0.27
81 3 0.04
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAAA
TATAGTAACTAGCAC
Found at i:58002282 original size:40 final size:40
Alignment explanation
Indices: 58002098--58002282 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
58002088 GCTACTCGTT
* *
58002098 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* ** *
58002138 CAAATGCCTTCGGGACTTAACCCAAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
58002178 CCAATGCCTTCGGG-CTTAGCCCAGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
58002217 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
58002258 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
58002283 CATTATTCGA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.63
41 12 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:58006729 original size:19 final size:17
Alignment explanation
Indices: 58006707--58006742 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
58006697 AGAATTAGCC
58006707 AAATGGGCCAGAATGGGCT
1 AAATGGGCC-G-ATGGGCT
58006726 AAATGGGCCGATGGGCT
1 AAATGGGCCGATGGGCT
58006743 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 1 0.06
19 9 0.53
ACGTcount: A:0.28, C:0.17, G:0.39, T:0.17
Consensus pattern (17 bp):
AAATGGGCCGATGGGCT
Found at i:58006869 original size:29 final size:29
Alignment explanation
Indices: 58006816--58006930 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
58006806 CATGAATTAT
* * * *
58006816 AATATGATTTAGGCCTAATAGGCCATATG
1 AATATGAATTGGGCCTAGTGGGCCATATG
* *
58006845 AATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAGTGGGCCATATG
* * *
58006874 AATATGAACTAGGCC-AGATGGGCCATTTG
1 AATATGAATTGGGCCTAG-TGGGCCATATG
*
58006903 AATAAG-ATTGGGCCTAGTGGGCCATATG
1 AATATGAATTGGGCCTAGTGGGCCATATG
58006931 CATGTATGTA
Statistics
Matches: 69, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
28 18 0.26
29 51 0.74
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
AATATGAATTGGGCCTAGTGGGCCATATG
Found at i:58021451 original size:25 final size:25
Alignment explanation
Indices: 58021417--58021467 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
58021407 ATAACTCAAG
58021417 TGTATCTACTTTTAATTTCACTATT
1 TGTATCTACTTTTAATTTCACTATT
*
58021442 TGTATCTACTTTTAATTTTACTATT
1 TGTATCTACTTTTAATTTCACTATT
58021467 T
1 T
58021468 ACTCCACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.04, T:0.59
Consensus pattern (25 bp):
TGTATCTACTTTTAATTTCACTATT
Found at i:58033959 original size:30 final size:29
Alignment explanation
Indices: 58033901--58033959 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
58033891 TTCTCGAGCC
*
58033901 TAGGGGCAAAAGTGTAATTATGCAAAGTT
1 TAGGGGCAAAAGTGTAATTATCCAAAGTT
*
58033930 TAGGGGCAAAAGTGTAATTTTTCCAAAGTT
1 TAGGGGCAAAAGTGTAA-TTATCCAAAGTT
58033960 GGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (29 bp):
TAGGGGCAAAAGTGTAATTATCCAAAGTT
Found at i:58034436 original size:46 final size:46
Alignment explanation
Indices: 58034386--58034558 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
58034376 TGGTTGAGCA
* *
58034386 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
58034432 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
58034479 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
58034525 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58034559 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 59 0.58
47 27 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:58034542 original size:93 final size:93
Alignment explanation
Indices: 58034383--58034553 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
58034373 GGATGGTTGA
* *
58034383 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
58034448 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
** * *
58034476 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
58034541 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
58034554 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:58036580 original size:24 final size:23
Alignment explanation
Indices: 58036536--58036580 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
58036526 ATACATTAGT
*
58036536 TAAAGATTTATTGATCAGAAATG
1 TAAAGATTTATTGAGCAGAAATG
* *
58036559 TAAAGAGTTTCTTGAGCTGAAA
1 TAAAGA-TTTATTGAGCAGAAA
58036581 CAAGGTAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 6 0.33
24 12 0.67
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (23 bp):
TAAAGATTTATTGAGCAGAAATG
Found at i:58041988 original size:47 final size:47
Alignment explanation
Indices: 58041937--58042110 Score: 201
Period size: 47 Copynumber: 3.7 Consensus size: 47
58041927 TGGTTGAGCA
*
58041937 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACG
* * * * * ** *
58041984 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGAAACG
*
58042031 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCG-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACG
* *
58042077 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58042111 GGGGCAGGTT
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
46 37 0.36
47 60 0.59
48 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACG
Found at i:58043620 original size:7 final size:7
Alignment explanation
Indices: 58043583--58043634 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
58043573 AAAGAATATA
58043583 TTCATTT
1 TTCATTT
58043590 TTCA--T
1 TTCATTT
*
58043595 ATCATTT
1 TTCATTT
58043602 TT-ATTT
1 TTCATTT
*
58043608 TCCATTT
1 TTCATTT
58043615 TTCATTT
1 TTCATTT
58043622 TT-A-TT
1 TTCATTT
58043627 TTCATTT
1 TTCATTT
58043634 T
1 T
58043635 GGAGAAAACC
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
5 8 0.22
6 7 0.19
7 21 0.58
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.69
Consensus pattern (7 bp):
TTCATTT
Found at i:58043621 original size:20 final size:19
Alignment explanation
Indices: 58043596--58043634 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
58043586 ATTTTTCATA
58043596 TCATTTTTATTTTCCATTTT
1 TCATTTTTATTTT-CATTTT
58043616 TCATTTTTATTTTCATTTT
1 TCATTTTTATTTTCATTTT
58043635 GGAGAAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.72
Consensus pattern (19 bp):
TCATTTTTATTTTCATTTT
Found at i:58046176 original size:18 final size:17
Alignment explanation
Indices: 58046153--58046186 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
58046143 GAATTAGGTT
58046153 AAGAAATTAATTTAATTG
1 AAGAAATTAA-TTAATTG
58046171 AAGAAATTAATTAATT
1 AAGAAATTAATTAATT
58046187 AATTAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (17 bp):
AAGAAATTAATTAATTG
Found at i:58048020 original size:24 final size:25
Alignment explanation
Indices: 58047965--58048020 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
58047955 AATGATAGAT
*
58047965 ATATCAAATTATTAATAAATTCAACA
1 ATAT-AAATTATTAAGAAATTCAACA
* *
58047991 AT-TAAATTATTAAGATATT-AATA
1 ATATAAATTATTAAGAAATTCAACA
58048014 ATATAAA
1 ATATAAA
58048021 AAGTATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 5 0.19
24 18 0.69
25 1 0.04
26 2 0.08
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (25 bp):
ATATAAATTATTAAGAAATTCAACA
Found at i:58059704 original size:16 final size:14
Alignment explanation
Indices: 58059676--58059709 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
58059666 AATCCTCCTG
58059676 TTTTTTTTATTTAGT
1 TTTTTTTTATTTA-T
58059691 TTTTTTTTATTTTAT
1 TTTTTTTTA-TTTAT
58059706 TTTT
1 TTTT
58059710 CTTATTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (14 bp):
TTTTTTTTATTTAT
Found at i:58067408 original size:39 final size:39
Alignment explanation
Indices: 58067354--58067431 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
58067344 CCCACTAGGC
* *
58067354 CCAATCTCATTCATATAGCCTATTAGGCCCAGATCACAT
1 CCAATCTCATTCATATAGCCCATTAGGCCCAAATCACAT
58067393 CCAATCTCATTCATATAGCCCATTAGGCCCAAATCACAT
1 CCAATCTCATTCATATAGCCCATTAGGCCCAAATCACAT
58067432 TCATATGGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.32, C:0.32, G:0.09, T:0.27
Consensus pattern (39 bp):
CCAATCTCATTCATATAGCCCATTAGGCCCAAATCACAT
Found at i:58067432 original size:29 final size:29
Alignment explanation
Indices: 58067395--58067463 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
58067385 GATCACATCC
*
58067395 AATCTCATTCATATAGCCCATTAGGCCCA
1 AATCACATTCATATAGCCCATTAGGCCCA
* *
58067424 AATCACATTCATATGGCTCATTAGGCCCA
1 AATCACATTCATATAGCCCATTAGGCCCA
58067453 AATCACATTCA
1 AATCACATTCA
58067464 CATTCATGCT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.28
Consensus pattern (29 bp):
AATCACATTCATATAGCCCATTAGGCCCA
Found at i:58073304 original size:40 final size:40
Alignment explanation
Indices: 58073195--58073455 Score: 368
Period size: 40 Copynumber: 6.6 Consensus size: 40
58073185 TATTCGGATG
* *
58073195 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
58073235 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
58073274 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
58073314 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
58073354 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
58073394 ATAACCAGGATAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
58073434 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
58073456 TACTTGGTTT
Statistics
Matches: 201, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
39 50 0.25
40 151 0.75
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:58087477 original size:30 final size:30
Alignment explanation
Indices: 58087443--58087502 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
58087433 ATTTAATACG
58087443 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
58087473 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
58087503 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:58088458 original size:27 final size:27
Alignment explanation
Indices: 58088394--58088794 Score: 168
Period size: 27 Copynumber: 14.9 Consensus size: 27
58088384 AATACTTTAG
* ** *
58088394 TTTACCAAATTACTGAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
* ** * *
58088421 ATTGTAAAATTACCAAAGTACCCTCTA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ****
58088448 TTTATAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * * *** *
58088475 TTTATAGAATTACTATTTTACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ***
58088502 TTTACAGAATTACTATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *
58088529 TTTACAAAATTACTAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
58088556 TTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
58088583 -TCAGTAAAATTACCAAAATACCCTAG-
1 TTTA-CAAAATTACCAAAATACCCTCGA
** * * * * *
58088609 TTTGTAAAATTGCTAAAATACCATTGG
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
58088636 TTTGTAAAATTA-TAGAAATACCCTCAA
1 TTTACAAAATTACCA-AAATACCCTCGA
** *
58088663 TTTGTAAAATTACCAAAATACCC-CTA
1 TTTACAAAATTACCAAAATACCCTCGA
** * * *
58088689 GTTTGTAACATTACCCAAATACCACT-GG
1 -TTTACAAAATTACCAAAATACC-CTCGA
*** * *
58088717 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
**
58088744 TTTTTAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACCAAAATACCCTC-GA
*
58088771 TTTACAAAGTTA-CAGAAATACCCT
1 TTTACAAAATTACCA-AAATACCCT
58088795 TGACTTTCTA
Statistics
Matches: 302, Mismatches: 60, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
26 29 0.10
27 271 0.90
28 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:58088605 original size:81 final size:80
Alignment explanation
Indices: 58088520--58088807 Score: 260
Period size: 81 Copynumber: 3.5 Consensus size: 80
58088510 ATTACTATTT
** * *
58088520 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAAAATTACCAAAATACCCTCGATC
1 TACCC-CGATTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCAATT
*
58088585 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* ** * * * *
58088601 TA-CCCTAGTTTGTAAAATTGCTAAAATACCATTGGTTTGTAAAATTA-TAGAAATACCCTCAAT
1 TACCCCGA-TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCA-AAATACCCTCAAT
58088664 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
* ** * ** * * *
58088681 TACCCCTAGTTTGTAACATTACCCAAATACCAC-TGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCCGA-TTTACAAAATTACTAAAATACC-CTTGATTTGTAAAATTACCAAAATACCCTCAAT
*
58088745 TTTTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
* *
58088762 TACCCCTGATTTACAAAGTTAC-AGAAATACCCTTGACTTTCTAAAA
1 TACCCC-GATTTACAAAATTACTA-AAATACCCTTGA-TTTGTAAAA
58088808 ATTATGGAAA
Statistics
Matches: 168, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
79 3 0.02
80 64 0.38
81 93 0.55
82 8 0.05
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (80 bp):
TACCCCGATTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:58088683 original size:54 final size:53
Alignment explanation
Indices: 58088534--58088684 Score: 160
Period size: 53 Copynumber: 2.8 Consensus size: 53
58088524 CTCGATTTAC
* ** *
58088534 AAAATTACTAAAATACCCTTGATTTACAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACTAAAATACCC-TAATTTGTAAAATTACCAAAATACCATCGATCAGT
* * * * * * **
58088588 AAAATTACCAAAATACCCTAGTTTGTAAAATTGCTAAAATACCATTGGTTTGT
1 AAAATTACTAAAATACCCTAATTTGTAAAATTACCAAAATACCATCGATCAGT
58088641 AAAATTA-TAGAAATACCCTCAATTTGTAAAATTACCAAAATACC
1 AAAATTACTA-AAATACCCT-AATTTGTAAAATTACCAAAATACC
58088685 CCTAGTTTGT
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
52 1 0.01
53 40 0.51
54 38 0.48
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (53 bp):
AAAATTACTAAAATACCCTAATTTGTAAAATTACCAAAATACCATCGATCAGT
Found at i:58088844 original size:27 final size:27
Alignment explanation
Indices: 58088805--58088856 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
58088795 TGACTTTCTA
58088805 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
58088832 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
58088857 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:58088940 original size:27 final size:27
Alignment explanation
Indices: 58088910--58088997 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
58088900 ACCCCTATTA
*
58088910 GGTAAAAAGACCGTAAAGCTCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
* *
58088937 GGTAAAGAGACCGTAAAGCCCCTATAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
** *
58088964 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAAAGACCGTAA-AGCCCCTGTAG
58088991 GGTAAAA
1 GGTAAAA
58088998 TGACGAATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.19
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTGTAG
Found at i:58089001 original size:27 final size:27
Alignment explanation
Indices: 58088901--58089001 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 27
58088891 GACTAAAATA
*
58088901 CCCCTATTA-GGTAAAAAGACCGTAAAG
1 CCCCTA-TAGGGTAAAATGACCGTAAAG
* *
58088928 CTCCTGTAGGGTAAAGA-GACCGTAAAG
1 CCCCTATAGGGTAAA-ATGACCGTAAAG
*
58088955 CCCCTATAGGGTAAAGTGACCGTAATA-
1 CCCCTATAGGGTAAAATGACCGTAA-AG
* *
58088982 CCCCTGTATGGTAAAATGAC
1 CCCCTATAGGGTAAAATGAC
58089002 GAATATGCCC
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
26 2 0.03
27 58 0.94
28 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CCCCTATAGGGTAAAATGACCGTAAAG
Found at i:58089757 original size:16 final size:16
Alignment explanation
Indices: 58089736--58089766 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
58089726 CAAATATGGG
*
58089736 CATGACATTTTGCATA
1 CATGACATGTTGCATA
58089752 CATGACATGTTGCAT
1 CATGACATGTTGCAT
58089767 TGGGTTGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:58089922 original size:58 final size:54
Alignment explanation
Indices: 58089800--58089943 Score: 220
Period size: 58 Copynumber: 2.6 Consensus size: 54
58089790 GAGGAAATGC
58089800 AAAAGGGCTTATGCCCCAGTTTATTGAAAA-GG-GCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCGCTTATGCCCCAGTTTACCA
* *
58089852 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCATAAGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGC----GCTTATGCCCCAGTTTACCA
58089910 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGC
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGC
58089944 TTTGCCCTAG
Statistics
Matches: 83, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
52 29 0.35
53 2 0.02
58 52 0.63
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (54 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCGCTTATGCCCCAGTTTACCA
Found at i:58089968 original size:24 final size:26
Alignment explanation
Indices: 58089800--58089968 Score: 191
Period size: 26 Copynumber: 6.3 Consensus size: 26
58089790 GAGGAAATGC
58089800 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
***
58089826 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
58089852 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
58089878 AAAAGGGCATAAGCTTATGCCCCAGTTTACCG
1 AAAA-GG-----GCTTATGCCCCAGTTTATTG
58089910 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
58089936 AAAAGGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
58089959 AAAAGAGGCT
1 AAAAG-GGCT
58089969 AGGCCTCCAG
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
23 5 0.04
24 9 0.07
25 7 0.06
26 77 0.63
27 2 0.02
31 2 0.02
32 21 0.17
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:58090210 original size:31 final size:31
Alignment explanation
Indices: 58090174--58090252 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
58090164 CGTTTACAGT
*
58090174 AAAGGCTTCAGCCTAATGATATGATTTATGA
1 AAAGGCTTCAGCCCAATGATATGATTTATGA
* *
58090205 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAATGATATGATTTATGA
58090236 AAAGGCTTCAGCCCAAT
1 AAAGGCTTCAGCCCAAT
58090253 AACCGTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAATGATATGATTTATGA
Found at i:58093071 original size:22 final size:23
Alignment explanation
Indices: 58093034--58093081 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
58093024 TTAAAAATTA
*
58093034 TAATTTTAAAATAATTTTA-TAT
1 TAATTTTAAAATAATTTAACTAT
58093056 TAATATTTAAAA-AATTTAACTAT
1 TAAT-TTTAAAATAATTTAACTAT
58093079 TAA
1 TAA
58093082 AAAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TAATTTTAAAATAATTTAACTAT
Found at i:58093074 original size:16 final size:17
Alignment explanation
Indices: 58093055--58093087 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
58093045 TAATTTTATA
*
58093055 TTAA-TATTTAAAAAAT
1 TTAACTATTAAAAAAAT
58093071 TTAACTATTAAAAAAAT
1 TTAACTATTAAAAAAAT
58093088 AAAAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAACTATTAAAAAAAT
Found at i:58097940 original size:79 final size:81
Alignment explanation
Indices: 58097772--58097956 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
58097762 GCTACTCGTT
* *
58097772 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
58097836 GATTTAGAAACTCGCAC
65 GATATAGAAACTAGCAC
* * **
58097853 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGTCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* **
58097916 ATATGGTCACTTAGCA-
66 ATATAGAAAC-TAGCAC
58097932 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
58097957 CATCATTCGA
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
79 61 0.69
80 25 0.28
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGAAACTAGCAC
Found at i:58097956 original size:40 final size:40
Alignment explanation
Indices: 58097753--58097956 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
58097743 CGGAATTTAA
** *
58097753 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58097793 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
58097833 CCGGATTTAGAAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58097872 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGTCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
58097912 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58097952 CCGGA
1 CCGGA
58097957 CATCATTCGA
Statistics
Matches: 140, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 35 0.25
40 96 0.69
41 9 0.06
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58101383 original size:47 final size:47
Alignment explanation
Indices: 58100924--58101371 Score: 662
Period size: 47 Copynumber: 9.3 Consensus size: 47
58100914 CCCTTCGGGA
* * * * * *
58100924 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58100971 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58101018 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58101065 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58101112 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58101161 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58101210 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-----CCATTAGGC
* *
58101262 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58101311 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58101358 CTTATCACATATAT
1 CTTATCACATATAT
58101372 GTACATTCAC
Statistics
Matches: 371, Mismatches: 21, Indels: 18
0.90 0.05 0.04
Matches are distributed among these distances:
47 216 0.58
49 110 0.30
52 16 0.04
54 29 0.08
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.