Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 189 of 325
Found at i:59778000 original size:46 final size:46
Alignment explanation
Indices: 59777825--59778000 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
59777815 TGTAACCCGC
* *
59777825 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
59777871 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
59777917 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
59777964 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
59778001 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:59783374 original size:44 final size:44
Alignment explanation
Indices: 59783311--59783483 Score: 175
Period size: 44 Copynumber: 3.8 Consensus size: 44
59783301 TGTAACCCGC
*
59783311 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCAT
* ***
59783355 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCATTCAT
* *** * * *
59783401 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATT--CAT
* *
59783448 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
59783484 ATGCCCAAAA
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
44 36 0.35
45 2 0.02
46 35 0.34
47 31 0.30
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCAT
Found at i:59783476 original size:93 final size:91
Alignment explanation
Indices: 59783319--59783488 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 91
59783309 GCCCATAAGT
* * * *
59783319 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCATCCATAAATGAACTCGGACTCAACTCAACG
59783384 AGCTCGGATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
59783410 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATT--CATCCATAAATGAACTCGGACTCAACTCAA
*
59783475 CGAGTTCGGATGCC
64 CGAGCTCGGATGCC
59783489 CAAAATCCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
91 29 0.41
93 42 0.59
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCATCCATAAATGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:59790090 original size:23 final size:23
Alignment explanation
Indices: 59790056--59790100 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
59790046 GTGCTTTACA
59790056 CGGCTTTAGACACGACCGTGTGG
1 CGGCTTTAGACACGACCGTGTGG
* *
59790079 CGGCTTTCGACACTACCGTGTG
1 CGGCTTTAGACACGACCGTGTG
59790101 TCTAGGCCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.24
Consensus pattern (23 bp):
CGGCTTTAGACACGACCGTGTGG
Found at i:59794766 original size:28 final size:28
Alignment explanation
Indices: 59794722--59794786 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
59794712 ATGTACTATT
*
59794722 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATGACCATA
* * *
59794750 ATACCCCTATGTTTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATA
59794778 ATACCCCTA
1 ATACCCCTA
59794787 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATA
Found at i:59794923 original size:28 final size:26
Alignment explanation
Indices: 59794892--59794981 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 26
59794882 AGGAAGCGTC
*
59794892 CTGGTGGCTATGCCATAAATTATCTGTT
1 CTGGTGGC-ATGCCACAAA-TATCTGTT
* *
59794920 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGG-CATGCCACAAATATCTGTT
*
59794947 CTGGTGGCACTGCCAGAAAATATCTGTAT
1 CTGGTGGCA-TGCCA-CAAATATCTGT-T
59794976 CTGGTG
1 CTGGTG
59794982 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.02
27 20 0.38
28 23 0.44
29 8 0.15
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (26 bp):
CTGGTGGCATGCCACAAATATCTGTT
Found at i:59794950 original size:27 final size:28
Alignment explanation
Indices: 59794892--59794981 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
59794882 AGGAAGCGTC
* *
59794892 CTGGTGGCTA-TGCCATAAATTATCTGTT
1 CTGGTGGC-ACTGCCAGAAAATATCTGTT
* * *
59794920 CTGGTGGCCCTGCCA-CATATATCTGTT
1 CTGGTGGCACTGCCAGAAAATATCTGTT
59794947 CTGGTGGCACTGCCAGAAAATATCTGTAT
1 CTGGTGGCACTGCCAGAAAATATCTGT-T
59794976 CTGGTG
1 CTGGTG
59794982 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCAGAAAATATCTGTT
Found at i:59795006 original size:56 final size:55
Alignment explanation
Indices: 59794892--59795006 Score: 126
Period size: 55 Copynumber: 2.1 Consensus size: 55
59794882 AGGAAGCGTC
* * * *
59794892 CTGGTGGCTATGCCATAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAGAAAATATCTGTTCTGGTGACCCTGCCACATATATCTATT
* * *
59794947 CTGGTGGC-ACTGCCAGAAAATATCTGTATCTGGTGACTCTGTCACAT-TCTCTATAT
1 CTGGTGGCTA-TGCCAGAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTAT-T
59795003 CTGG
1 CTGG
59795007 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.56
56 21 0.42
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (55 bp):
CTGGTGGCTATGCCAGAAAATATCTGTTCTGGTGACCCTGCCACATATATCTATT
Found at i:59796106 original size:11 final size:10
Alignment explanation
Indices: 59796078--59796111 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
59796068 AGCCTGTAAG
59796078 TATTCTGAAT
1 TATTCTGAAT
*
59796088 TTTTCTGAAT
1 TATTCTGAAT
59796098 ATATTCTGAAT
1 -TATTCTGAAT
59796109 TAT
1 TAT
59796112 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:59804178 original size:28 final size:28
Alignment explanation
Indices: 59804135--59804255 Score: 179
Period size: 28 Copynumber: 4.3 Consensus size: 28
59804125 ATGTACTATT
* *
59804135 ATACCCCAATGCATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
59804163 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
* *
59804191 ATACCCCTATGTATACAAAATTATCATA
1 ATACCCCTATGTATGCAAAATTACCATA
* * *
59804219 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATA
59804247 ATACCCCTA
1 ATACCCCTA
59804256 GAGTTAATTT
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 84 1.00
ACGTcount: A:0.39, C:0.26, G:0.07, T:0.28
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATA
Found at i:59804394 original size:28 final size:26
Alignment explanation
Indices: 59804363--59804442 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 26
59804353 GAAGCGTCCT
*
59804363 GGTGGCTATGCCACAAATTTTCTGTTCC
1 GGTGGC-ATGCCACAAA-TATCTGTTCC
* * *
59804391 GGTGGCCCTGCCACATATATCTGTTCT
1 GGTGG-CATGCCACAAATATCTGTTCC
59804418 GGTGGCACTGCCACAAAATATCTGT
1 GGTGGCA-TGCCAC-AAATATCTGT
59804443 ATCTGGTGAC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 19 0.44
28 22 0.51
29 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (26 bp):
GGTGGCATGCCACAAATATCTGTTCC
Found at i:59804421 original size:27 final size:28
Alignment explanation
Indices: 59804361--59804450 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
59804351 AGGAAGCGTC
* *
59804361 CTGGTGGCTA-TGCCACAAATTTTCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* * *
59804389 CCGGTGGCCCTGCCAC-ATATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
59804416 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
59804445 CTGGTG
1 CTGGTG
59804451 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:59804461 original size:29 final size:28
Alignment explanation
Indices: 59804371--59804461 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
59804361 CTGGTGGCTA
* * * * *
59804371 TGCCACAAATTTTCTGTTCCGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
59804399 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
59804426 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
59804455 TGTCACA
1 TGCCACA
59804462 TTCTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 22 0.42
28 15 0.29
29 15 0.29
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:59804469 original size:55 final size:56
Alignment explanation
Indices: 59804361--59804475 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
59804351 AGGAAGCGTC
* * *
59804361 CTGGTGGCTATGCCACAAATTTTCTGTTCCGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCCGGTGACCCTGCCACATATATCTGTAT
* * * *
59804416 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TCTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCCGGTGACCCTGCCACATATATCTGTAT
59804472 CTGG
1 CTGG
59804476 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCCGGTGACCCTGCCACATATATCTGTAT
Found at i:59805578 original size:11 final size:10
Alignment explanation
Indices: 59805550--59805583 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
59805540 AGCCTGTAAG
59805550 TATTCTGAAT
1 TATTCTGAAT
*
59805560 TTTTCTGAAT
1 TATTCTGAAT
59805570 ATATTCTGAAT
1 -TATTCTGAAT
59805581 TAT
1 TAT
59805584 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:59811779 original size:27 final size:27
Alignment explanation
Indices: 59811748--59811952 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
59811738 ATATTGAGTC
* * *
59811748 CGCACACTCAGTGCTATATCA-TCAACT
1 CGCACACTTAGTGCTACAT-AGTCAAAT
* *
59811775 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59811802 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
59811830 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
59811857 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
59811884 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59811911 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59811938 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59811953 GTACAATTTA
Statistics
Matches: 156, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.84
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:59819773 original size:27 final size:27
Alignment explanation
Indices: 59819742--59819946 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
59819732 ATATTGAGTC
* * *
59819742 CGCACACTCAGTGCTATATCA-TCAACT
1 CGCACACTTAGTGCTACAT-AGTCAAAT
* *
59819769 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59819796 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
59819824 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
59819851 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
59819878 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59819905 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
59819932 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59819947 GTACAATTTA
Statistics
Matches: 156, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.84
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:59830388 original size:20 final size:20
Alignment explanation
Indices: 59830363--59830405 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
59830353 TGTACTATTA
59830363 TACCCCAATGCATGCAAAAT
1 TACCCCAATGCATGCAAAAT
* *
59830383 TACCCCTATGTATGCAAAAT
1 TACCCCAATGCATGCAAAAT
59830403 TAC
1 TAC
59830406 TATAATACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.28, G:0.09, T:0.26
Consensus pattern (20 bp):
TACCCCAATGCATGCAAAAT
Found at i:59830423 original size:28 final size:28
Alignment explanation
Indices: 59830383--59830474 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
59830373 CATGCAAAAT
*
59830383 TACCCCTATGTATGCAAAATTACTATAA
1 TACCCCTATGTATGCAAAATTACCATAA
*
59830411 TACCCCTATGTATACAAAATTACCATAA
1 TACCCCTATGTATGCAAAATTACCATAA
* * *
59830439 TACCCCTATGTATGCAAAATGACCTTTA
1 TACCCCTATGTATGCAAAATTACCATAA
59830467 TACCCCTA
1 TACCCCTA
59830475 GAGTTAATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.37, C:0.26, G:0.07, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATAA
Found at i:59830642 original size:27 final size:28
Alignment explanation
Indices: 59830592--59830669 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 28
59830582 GGTGGCTATG
* * * *
59830592 CCACAAATTATCTGTTTTGATGGCCCTA
1 CCACAAAATATCTGTTCTGGTGGCACTA
* *
59830620 CCAC-ATATATCTGTTCTGGTGGCACTG
1 CCACAAAATATCTGTTCTGGTGGCACTA
59830647 CCACAAAATATCTGTATCTGGTG
1 CCACAAAATATCTGT-TCTGGTG
59830670 ACTCTGTCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
27 21 0.51
28 13 0.32
29 7 0.17
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGGCACTA
Found at i:59830680 original size:29 final size:28
Alignment explanation
Indices: 59830590--59830680 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 28
59830580 CTGGTGGCTA
* * * * *
59830590 TGCCACAAATTATCTGTTTTGATGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* * *
59830618 TACCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
59830645 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
59830674 TGTCACA
1 TGCCACA
59830681 TTCTCTGTAT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
27 21 0.42
28 14 0.28
29 15 0.30
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:59847673 original size:56 final size:56
Alignment explanation
Indices: 59847554--59847674 Score: 206
Period size: 56 Copynumber: 2.2 Consensus size: 56
59847544 TAGATGTACT
*
59847554 ATTATACCCCAATGTATGCAAAATTACCATAATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCAATGTATGCAAAATTACCATAATACCCCTATGTATGCAAAATGACC
* *
59847610 ATAATACCCCTATGTATGCAAAATTACCATAATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCAATGTATGCAAAATTACCATAATACCCCTATGTATGCAAAATGACC
*
59847666 TTTATACCC
1 ATTATACCC
59847675 GTAGGGTTAA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.38, C:0.26, G:0.07, T:0.29
Consensus pattern (56 bp):
ATTATACCCCAATGTATGCAAAATTACCATAATACCCCTATGTATGCAAAATGACC
Found at i:59847674 original size:28 final size:28
Alignment explanation
Indices: 59847557--59847661 Score: 201
Period size: 28 Copynumber: 3.8 Consensus size: 28
59847547 ATGTACTATT
*
59847557 ATACCCCAATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
59847585 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
59847613 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
59847641 ATACCCCTATGTATGCAAAAT
1 ATACCCCTATGTATGCAAAAT
59847662 GACCTTTATA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 76 1.00
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.28
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATA
Found at i:59847841 original size:27 final size:27
Alignment explanation
Indices: 59847783--59847872 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
59847773 AGGAAGCGTC
59847783 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
59847811 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
59847838 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
59847867 CTGGTG
1 CTGGTG
59847873 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:59847891 original size:55 final size:56
Alignment explanation
Indices: 59847783--59847897 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
59847773 AGGAAGCGTC
* *
59847783 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
59847838 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TCTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
59847894 CTGG
1 CTGG
59847898 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:59861246 original size:42 final size:42
Alignment explanation
Indices: 59861138--59861304 Score: 147
Period size: 43 Copynumber: 3.9 Consensus size: 42
59861128 AGCTCGTACA
** * * *
59861138 ATGCCAATGTCCCAGATGTGGTCTTACATATAATCACATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACA-AATCACAAATCG
* * * * * *
59861181 ATGCCACTGTCCCTGATAGGGTCTTACACAAA-CTCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACAAATCACAAAT-CG
***
59861223 ATGTTGATGTCCCAGACATGGTCTTACATGCAAATCACAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACA--CAAATCACAAATCG
*
59861267 ATGCCAATGTCCCAGACGTGGTCTTACACAAAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACAC-AAATCACA
59861305 TATCAGAATC
Statistics
Matches: 99, Mismatches: 20, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
41 6 0.06
42 25 0.25
43 33 0.33
44 30 0.30
45 5 0.05
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACAAATCACAAATCG
Found at i:59862970 original size:17 final size:17
Alignment explanation
Indices: 59862940--59862972 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
59862930 CGGCTTTATG
59862940 GAAACAACTGATTTTCT
1 GAAACAACTGATTTTCT
59862957 GAAATCAACT-ATTTTC
1 GAAA-CAACTGATTTTC
59862973 GAGAAAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (17 bp):
GAAACAACTGATTTTCT
Found at i:59871208 original size:18 final size:18
Alignment explanation
Indices: 59871181--59871224 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
59871171 CCCATTATAG
*
59871181 TAACAATAATCAGTGCAA
1 TAACAGTAATCAGTGCAA
* *
59871199 TAACAGTAATCAGTGTAG
1 TAACAGTAATCAGTGCAA
59871217 TAACAGTA
1 TAACAGTA
59871225 TACAAGTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (18 bp):
TAACAGTAATCAGTGCAA
Found at i:59871311 original size:38 final size:38
Alignment explanation
Indices: 59871269--59871356 Score: 158
Period size: 38 Copynumber: 2.3 Consensus size: 38
59871259 CTCCGTCCAA
* *
59871269 CCCTACACTCCATGTGGGGATATAATCAACTCACCCAT
1 CCCTACACTCCATGCGGGGATATAATCAACCCACCCAT
59871307 CCCTACACTCCATGCGGGGATATAATCAACCCACCCAT
1 CCCTACACTCCATGCGGGGATATAATCAACCCACCCAT
59871345 CCCTACACTCCA
1 CCCTACACTCCA
59871357 GAATTAGCAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.28, C:0.40, G:0.11, T:0.20
Consensus pattern (38 bp):
CCCTACACTCCATGCGGGGATATAATCAACCCACCCAT
Found at i:59871614 original size:27 final size:27
Alignment explanation
Indices: 59871576--59871866 Score: 374
Period size: 27 Copynumber: 10.9 Consensus size: 27
59871566 ATGTATACAT
* * * *
59871576 CACAT-AGAGCAAAATAGTCATCTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
59871602 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
59871629 CATATAAGGGCAAAACAGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
*
59871656 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
59871683 CACATAAGGGCAAAATAATTATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
59871710 CACATAAGAGCAAAAATAGTCATTTTAC
1 CACATAAGGGC-AAAACAGTCATTTTAC
*
59871738 TACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
59871765 CATATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
59871792 TAC-TAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
59871818 CAC-TAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
59871844 CAC-TAAGGGCAAAACAATCATTT
1 CACATAAGGGCAAAACAGTCATTT
59871867 ATCAATTTGG
Statistics
Matches: 238, Mismatches: 25, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
26 72 0.30
27 143 0.60
28 23 0.10
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:59876699 original size:66 final size:66
Alignment explanation
Indices: 59876623--59876753 Score: 244
Period size: 66 Copynumber: 2.0 Consensus size: 66
59876613 TTCGAGTCTT
59876623 TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACCAAATCCTTACCCTTGAAGTATTAACTTAAGTT
1 TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACCAAATCCTTACCCTTGAAGTATTAACTTAAGTT
59876688 C
66 C
* *
59876689 TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACTAAATCCTTACCCTTGAAGTATTGACTTAAGTT
1 TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACCAAATCCTTACCCTTGAAGTATTAACTTAAGTT
59876754 TAATTCAGTG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.47
Consensus pattern (66 bp):
TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACCAAATCCTTACCCTTGAAGTATTAACTTAAGTT
C
Found at i:59876989 original size:13 final size:13
Alignment explanation
Indices: 59876973--59877007 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
59876963 TCTTCCAATT
59876973 TTCTTTTTCTTTG
1 TTCTTTTTCTTTG
* *
59876986 TTCTTTTACTTTT
1 TTCTTTTTCTTTG
59876999 TTCTTTTTC
1 TTCTTTTTC
59877008 ACTGCTTTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (13 bp):
TTCTTTTTCTTTG
Found at i:59879671 original size:26 final size:26
Alignment explanation
Indices: 59879587--59879722 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
59879577 CTGGAGGCCT
59879587 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
***
59879611 AGCCCTTTTTGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
59879636 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
59879662 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
59879688 AGCCCTTTTCAATAAACTTGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
59879714 AGCCCTTTT
1 AGCCCTTTT
59879723 GCACTTCCTC
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 32 0.32
26 57 0.58
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:59879711 original size:52 final size:51
Alignment explanation
Indices: 59879587--59879722 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
59879577 CTGGAGGCCT
*
59879587 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTTGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
59879636 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
*
59879688 AGCCCTTTTCAATAAACTTGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
59879723 GCACTTCCTC
Statistics
Matches: 81, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 10 0.12
51 24 0.30
52 35 0.43
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:59879797 original size:20 final size:20
Alignment explanation
Indices: 59879772--59879838 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
59879762 TTATGAATAC
59879772 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
59879792 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
59879812 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
59879832 ATCATGT
1 ATCATGT
59879839 ATATCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:59880670 original size:27 final size:27
Alignment explanation
Indices: 59880640--59880743 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 27
59880630 TTTCATCCTA
* *
59880640 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTCTACAAAT
* **
59880667 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTCTACAAAT
* *
59880694 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTCTACAAAT
* *
59880720 CTAGGGGTGTTTTGGTAATTCTAC
1 C-AAGGGTATTTTGGTAATTCTAC
59880744 CCTATAGGGG
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.03
27 61 0.95
28 1 0.02
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTCTACAAAT
Found at i:59880801 original size:27 final size:27
Alignment explanation
Indices: 59880771--59881053 Score: 158
Period size: 27 Copynumber: 10.4 Consensus size: 27
59880761 GTAATTTCAC
* * *
59880771 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
59880798 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
59880825 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
**** *
59880852 AATCGAGGG-AACTTTGGTAATT-TTTA
1 AATCGAGGGTAA-AACAGTAATTCTATA
*** * *
59880878 CAAGTCGAGGGTATTTCAGTAATTTTAAA
1 -AA-TCGAGGGTAAAACAGTAATTCTATA
* * **** * *
59880907 AATTAGGGGGTACTTTAGTAATTTTACA
1 AA-TCGAGGGTAAAACAGTAATTCTATA
* **** *
59880935 AA-CCAGGAGTATTTTAGTAATTTTATA
1 AATCGAGG-GTAAAACAGTAATTCTATA
* *
59880962 AATCGAGGGTAAAACGGTAATTCTATG
1 AATCGAGGGTAAAACAGTAATTCTATA
**
59880989 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
59881016 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
59881043 AACCGGGGGTA
1 AATCGAGGGTA
59881054 CTTTGGTAAT
Statistics
Matches: 209, Mismatches: 40, Indels: 14
0.79 0.15 0.05
Matches are distributed among these distances:
26 7 0.03
27 156 0.75
28 43 0.21
29 3 0.01
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:59880845 original size:54 final size:54
Alignment explanation
Indices: 59880771--59881053 Score: 189
Period size: 54 Copynumber: 5.2 Consensus size: 54
59880761 GTAATTTCAC
** * * *
59880771 AATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
* *** *
59880825 AATCGAGGGTAAAATAGTAATTCTATAAATCGAGGG-AACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAA-AACGGTAATTCTGTA
** * * * *****
59880878 CAAGTCGAGGGT-ATTTCAGTAATTTTAAAAATTAGGGGGTACTTTAGTAATT-T-TA
1 -AA-TCGAGGGTAAAAT-AGTAATTTTATAAA-TCGAGGGTAAAACGGTAATTCTGTA
* * *** * *
59880933 CAAACCAGGAGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATG
1 -AATCGAGG-GTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
* *
59880989 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
* *
59881043 AACCGGGGGTA
1 AATCGAGGGTA
59881054 CTTTGGTAAT
Statistics
Matches: 178, Mismatches: 41, Indels: 20
0.74 0.17 0.08
Matches are distributed among these distances:
53 5 0.03
54 106 0.60
55 47 0.26
56 19 0.11
57 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (54 bp):
AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
Found at i:59880900 original size:55 final size:54
Alignment explanation
Indices: 59880840--59880970 Score: 147
Period size: 55 Copynumber: 2.4 Consensus size: 54
59880830 AGGGTAAAAT
* * * *
59880840 AGTAATTCTATAAATCGAGGGAACTTTGGTAATTTTTACAAGTCGAGG-GTATTTC
1 AGTAATTTTATAAATCGAGGGAACTTTAGTAA-TTTTACAA-ACCAGGAGTATTTC
* * * * *
59880895 AGTAATTTTAAAAATTAGGGGGTACTTTAGTAATTTTACAAACCAGGAGTATTTT
1 AGTAATTTTATAAA-TCGAGGGAACTTTAGTAATTTTACAAACCAGGAGTATTTC
59880950 AGTAATTTTATAAATCGAGGG
1 AGTAATTTTATAAATCGAGGG
59880971 TAAAACGGTA
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
54 9 0.15
55 39 0.63
56 14 0.23
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (54 bp):
AGTAATTTTATAAATCGAGGGAACTTTAGTAATTTTACAAACCAGGAGTATTTC
Found at i:59893868 original size:32 final size:32
Alignment explanation
Indices: 59893823--59893903 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
59893813 TCTAGGTCAT
* *
59893823 TTTGGGCCATGTGGGCCACATGGGCAA-ACAAA
1 TTTGGGCCGTGTGGGCCACACGGGCAAGAC-AA
* *
59893855 TTTGGGTCGTGTGGGCCACACGGGCAAGGCAA
1 TTTGGGCCGTGTGGGCCACACGGGCAAGACAA
*
59893887 TTTAGGCCGTGTGGGCC
1 TTTGGGCCGTGTGGGCC
59893904 CAAAATTTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
32 41 0.98
33 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.37, T:0.21
Consensus pattern (32 bp):
TTTGGGCCGTGTGGGCCACACGGGCAAGACAA
Found at i:59898897 original size:20 final size:21
Alignment explanation
Indices: 59898857--59898897 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
59898847 GTCTCTTGTA
*
59898857 TTTTGTAAAATTTTCTAAGTT
1 TTTTGTAAAATTTCCTAAGTT
*
59898878 TTTTG-AAAATTTCCTGAGTT
1 TTTTGTAAAATTTCCTAAGTT
59898898 ACTAGTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.27, C:0.07, G:0.12, T:0.54
Consensus pattern (21 bp):
TTTTGTAAAATTTCCTAAGTT
Found at i:59904592 original size:30 final size:30
Alignment explanation
Indices: 59904551--59904608 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
59904541 AAATTCACAT
* * *
59904551 CTTTGGTAAAATAACCATTTTGCCCCTAGA
1 CTTTGGCAAAATAACCATTCTACCCCTAGA
*
59904581 CTTTGGCAAAATGACCATTCTACCCCTA
1 CTTTGGCAAAATAACCATTCTACCCCTA
59904609 TATTTGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (30 bp):
CTTTGGCAAAATAACCATTCTACCCCTAGA
Found at i:59909074 original size:27 final size:26
Alignment explanation
Indices: 59909026--59909077 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
59909016 GCGAACCTGC
*
59909026 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGACACCAGAA
* *
59909052 CAGATATATGTGGCGAGGACACCAGA
1 CAGATAT-TGTGACGAAGACACCAGA
59909078 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAGAA
Found at i:59935789 original size:39 final size:39
Alignment explanation
Indices: 59935745--59935864 Score: 186
Period size: 39 Copynumber: 3.1 Consensus size: 39
59935735 ATGCAAGACA
* *
59935745 CTGGAAATGTATCCGAGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
59935784 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
59935823 CTGGAAATGTATCCGGGTTAAAGTCCCACAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
59935862 CTG
1 CTG
59935865 ATAATATAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:59947538 original size:7 final size:7
Alignment explanation
Indices: 59947528--59947566 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
59947518 AATAGAATGA
*
59947528 ATGAGGA
1 ATGAGGG
59947535 ATGAGGG
1 ATGAGGG
*
59947542 ATGAGTG
1 ATGAGGG
59947549 ATGAGGG
1 ATGAGGG
59947556 ATGAGGG
1 ATGAGGG
59947563 ATGA
1 ATGA
59947567 ATAGAAATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.49, T:0.18
Consensus pattern (7 bp):
ATGAGGG
Found at i:59948673 original size:27 final size:27
Alignment explanation
Indices: 59948627--59948678 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
59948617 CAGTAATAGT
*
59948627 TGGGCCTAGCCCATTAACAGAATCAGG
1 TGGGCCTAGCCCAATAACAGAATCAGG
59948654 TGGGCCTAAGCCCAAT-ACAGAATCA
1 TGGGCCT-AGCCCAATAACAGAATCA
59948679 ATATCAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.33, C:0.27, G:0.23, T:0.17
Consensus pattern (27 bp):
TGGGCCTAGCCCAATAACAGAATCAGG
Found at i:59952268 original size:76 final size:81
Alignment explanation
Indices: 59952127--59952308 Score: 234
Period size: 76 Copynumber: 2.3 Consensus size: 81
59952117 GCTACTCGTT
* *
59952127 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
59952192 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
**
59952207 CAAATGCCTTCGGG-CTTA-CCCGGAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
59952267 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
59952284 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59952309 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
75 3 0.03
76 42 0.47
77 16 0.18
78 12 0.13
79 3 0.03
80 14 0.16
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:59952308 original size:40 final size:40
Alignment explanation
Indices: 59952108--59952308 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
59952098 CGGAATTTAA
** *
59952108 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59952148 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
59952188 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTA-C
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
59952226 CCGGAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
59952264 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
59952304 CCGGA
1 CCGGA
59952309 CATCATTCAA
Statistics
Matches: 142, Mismatches: 11, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
35 2 0.01
36 18 0.13
37 8 0.06
38 13 0.09
39 8 0.06
40 82 0.58
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:59960181 original size:79 final size:82
Alignment explanation
Indices: 59960070--59960254 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
59960060 GCTACTCGTT
* *
59960070 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
59960133 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
59960150 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
59960213 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
59960230 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59960255 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:59960254 original size:40 final size:40
Alignment explanation
Indices: 59960051--59960254 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
59960041 CGGAATTTAA
** *
59960051 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59960091 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
59960131 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59960170 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
59960210 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
59960250 CCGGA
1 CCGGA
59960255 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:59963982 original size:13 final size:13
Alignment explanation
Indices: 59963966--59964003 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
59963956 CTTTCTCTTC
59963966 CTTTTTTCTTTTT
1 CTTTTTTCTTTTT
59963979 CTTTGTTT-TTTTT
1 CTTT-TTTCTTTTT
*
59963992 CTTTTTCCTTTT
1 CTTTTTTCTTTT
59964004 CTCTGCTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 2 0.09
13 17 0.77
14 3 0.14
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.82
Consensus pattern (13 bp):
CTTTTTTCTTTTT
Found at i:59964132 original size:23 final size:23
Alignment explanation
Indices: 59964106--59964149 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
59964096 CACAAAAATA
* *
59964106 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
59964129 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
59964150 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:59971735 original size:28 final size:27
Alignment explanation
Indices: 59971703--59971863 Score: 128
Period size: 28 Copynumber: 5.7 Consensus size: 27
59971693 CATACATGCA
59971703 TATGGCCCACTAGGCCCAATCTTATTC
1 TATGGCCCACTAGGCCCAATCTTATTC
* *
59971730 AAATGGCCCA-TATGGCCCAATTTATATTC
1 -TATGGCCCACTA-GGCCCAATCT-TATTC
* * **
59971759 TTATGACCCACTAGGCCCAGTTCACATTC
1 -TATGGCCCACTAGGCCCA-ATCTTATTC
*
59971788 TATGGCCCA-TATGGCCCAATTTATATTC
1 TATGGCCCACTA-GGCCCAATCT-TATTC
* **
59971816 TTATGACCCACTAGGCCCAATTCACATTC
1 -TATGGCCCACTAGGCCCAA-TCTTATTC
*
59971845 TATGGCCCATTAGGCCCAA
1 TATGGCCCACTAGGCCCAA
59971864 ATCATATTAT
Statistics
Matches: 104, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
27 5 0.05
28 52 0.50
29 41 0.39
30 6 0.06
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.29
Consensus pattern (27 bp):
TATGGCCCACTAGGCCCAATCTTATTC
Found at i:59971768 original size:29 final size:28
Alignment explanation
Indices: 59971736--59971863 Score: 127
Period size: 29 Copynumber: 4.5 Consensus size: 28
59971726 ATTCAAATGG
* *
59971736 CCCATATGGCCCAATTTATATTCTTATGA
1 CCCATATGGCCCAATTCACATTC-TATGA
* *
59971765 CCCACTA-GGCCCAGTTCACATTCTATGG
1 CCCA-TATGGCCCAATTCACATTCTATGA
* *
59971793 CCCATATGGCCCAATTTATATTCTTATGA
1 CCCATATGGCCCAATTCACATTC-TATGA
*
59971822 CCCACTA-GGCCCAATTCACATTCTATGG
1 CCCA-TATGGCCCAATTCACATTCTATGA
59971850 CCCAT-TAGGCCCAA
1 CCCATAT-GGCCCAA
59971864 ATCATATTAT
Statistics
Matches: 82, Mismatches: 11, Indels: 13
0.77 0.10 0.12
Matches are distributed among these distances:
27 3 0.04
28 36 0.44
29 39 0.48
30 4 0.05
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (28 bp):
CCCATATGGCCCAATTCACATTCTATGA
Found at i:59971871 original size:57 final size:57
Alignment explanation
Indices: 59971703--59971863 Score: 245
Period size: 57 Copynumber: 2.8 Consensus size: 57
59971693 CATACATGCA
* ** *
59971703 TATGGCCCACTAGGCCCAA-TCTTATTCAAATGGCCCATATGGCCCAATTTATATTCT
1 TATGACCCACTAGGCCCAATTCACATTC-TATGGCCCATATGGCCCAATTTATATTCT
*
59971760 TATGACCCACTAGGCCCAGTTCACATTCTATGGCCCATATGGCCCAATTTATATTCT
1 TATGACCCACTAGGCCCAATTCACATTCTATGGCCCATATGGCCCAATTTATATTCT
59971817 TATGACCCACTAGGCCCAATTCACATTCTATGGCCCAT-TAGGCCCAA
1 TATGACCCACTAGGCCCAATTCACATTCTATGGCCCATAT-GGCCCAA
59971864 ATCATATTAT
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
56 1 0.01
57 89 0.93
58 6 0.06
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.29
Consensus pattern (57 bp):
TATGACCCACTAGGCCCAATTCACATTCTATGGCCCATATGGCCCAATTTATATTCT
Found at i:59982350 original size:78 final size:81
Alignment explanation
Indices: 59982215--59982398 Score: 234
Period size: 78 Copynumber: 2.3 Consensus size: 81
59982205 TTGAATGATG
*
59982215 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
59982279 TGTGCGAGATACAAT-
66 TGTGCGAGATACAATA
* * * **
59982294 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
59982356 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACAATA
* *
59982373 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
59982399 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
77 1 0.01
78 49 0.54
79 27 0.30
80 14 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACAATA
Found at i:59982360 original size:40 final size:40
Alignment explanation
Indices: 59982215--59982398 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
59982205 TTGAATGATG
* * * *
59982215 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
59982255 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
59982294 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
59982333 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
59982374 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
59982399 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 22 0.17
39 23 0.18
40 71 0.56
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:59982416 original size:80 final size:77
Alignment explanation
Indices: 59982216--59982431 Score: 195
Period size: 78 Copynumber: 2.7 Consensus size: 77
59982206 TGAATGATGT
** * * * *
59982216 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCATT
*
59982279 TGTGCGAGATACAATT
62 TGTGCGAGATACAATA
** * *
59982295 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGT
* *
59982360 GCGAGTTACTATAA
65 GCGAGATACAAT-A
* * *
59982374 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
59982432 TACGTGATTT
Statistics
Matches: 115, Mismatches: 16, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 46 0.40
79 43 0.37
80 25 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (77 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTG
CGAGATACAATA
Found at i:59990087 original size:79 final size:81
Alignment explanation
Indices: 59989951--59990135 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
59989941 TTGAATGATG
*
59989951 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
59990015 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
59990030 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
59990092 TTTGTGTGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
59990110 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
59990136 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:59990149 original size:40 final size:40
Alignment explanation
Indices: 59989952--59990135 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
59989942 TGAATGATGT
* * * *
59989952 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
59989992 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
59990032 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
59990070 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
59990111 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
59990136 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:59990157 original size:79 final size:79
Alignment explanation
Indices: 59989952--59990168 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
59989942 TGAATGATGT
** * * * **
59989952 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
59990015 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
59990032 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
* *
59990097 GTGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
59990111 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
59990169 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.61
80 42 0.37
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:59993974 original size:29 final size:29
Alignment explanation
Indices: 59993940--59994001 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
59993930 TACATACATG
*
59993940 CATATGGCCCACTAGGCCCAATTCATATT
1 CATATGGCCCACTAGGCCCAAATCATATT
*
59993969 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAAATCATATT
59993998 -ATAT
1 CATAT
59994002 TCATGCTCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAAATCATATT
Found at i:59994115 original size:19 final size:19
Alignment explanation
Indices: 59994079--59994115 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
59994069 CAACCCATGA
*
59994079 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
59994098 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
59994116 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:59999090 original size:16 final size:16
Alignment explanation
Indices: 59999069--59999129 Score: 79
Period size: 16 Copynumber: 3.9 Consensus size: 16
59999059 CTGCAAAGGA
*
59999069 TGAAAAGTCGAAAACC
1 TGAAAAGCCGAAAACC
59999085 TGAAAAGCCGAAAACC
1 TGAAAAGCCGAAAACC
* **
59999101 TGAAAAGCTGAAAGGC
1 TGAAAAGCCGAAAACC
59999117 TGAAAAGCC-AAAA
1 TGAAAAGCCGAAAA
59999130 AGTGGGTGTC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
15 3 0.08
16 36 0.92
ACGTcount: A:0.51, C:0.18, G:0.21, T:0.10
Consensus pattern (16 bp):
TGAAAAGCCGAAAACC
Found at i:59999118 original size:8 final size:8
Alignment explanation
Indices: 59999069--59999124 Score: 60
Period size: 8 Copynumber: 7.0 Consensus size: 8
59999059 CTGCAAAGGA
59999069 TGAAAAG-
1 TGAAAAGC
*
59999076 TCGAAAACC
1 T-GAAAAGC
59999085 TGAAAAGC
1 TGAAAAGC
* *
59999093 CGAAAACC
1 TGAAAAGC
59999101 TGAAAAGC
1 TGAAAAGC
*
59999109 TGAAAGGC
1 TGAAAAGC
59999117 TGAAAAGC
1 TGAAAAGC
59999125 CAAAAAGTGG
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
7 1 0.03
8 37 0.95
9 1 0.03
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (8 bp):
TGAAAAGC
Found at i:59999659 original size:27 final size:27
Alignment explanation
Indices: 59999466--59999651 Score: 300
Period size: 27 Copynumber: 6.9 Consensus size: 27
59999456 CGTACTTGAA
59999466 CCCTTATGTGATAAAATGACGATATTG
1 CCCTTATGTGATAAAATGACGATATTG
59999493 CCCTTATGTGATAAAATGACGATATTG
1 CCCTTATGTGATAAAATGACGATATTG
*
59999520 CCCTTATGTGATAAAATGACGATATTA
1 CCCTTATGTGATAAAATGACGATATTG
*
59999547 TCCTTATGTGATAAAATGACGATATTG
1 CCCTTATGTGATAAAATGACGATATTG
* * *
59999574 TCCTTATGTGATAAAATAACGATATTA
1 CCCTTATGTGATAAAATGACGATATTG
* *
59999601 CCCTTATGTGATAAAAATAACAATATTG
1 CCCTTATGTGAT-AAAATGACGATATTG
59999629 CCCTTATGTGATAAAATGACGAT
1 CCCTTATGTGATAAAATGACGAT
59999652 TTTTCCCTCA
Statistics
Matches: 148, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 123 0.83
28 25 0.17
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACGATATTG
Found at i:59999712 original size:27 final size:26
Alignment explanation
Indices: 59999656--59999729 Score: 76
Period size: 27 Copynumber: 2.8 Consensus size: 26
59999646 GACGATTTTT
* *
59999656 CCCTCATAGGGTAAAATAACCAAAATA
1 CCCT-ATAGGGTAAAATGACTAAAATA
* *
59999683 CCCTATAGGGTAAAATGACTACAGTAA
1 CCCTATAGGGTAAAATGACTAAAAT-A
* *
59999710 CCCTTTAAGGTAAAATGACT
1 CCCTATAGGGTAAAATGACT
59999730 GATTTGCTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 17 0.43
27 23 0.57
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (26 bp):
CCCTATAGGGTAAAATGACTAAAATA
Found at i:60000147 original size:18 final size:18
Alignment explanation
Indices: 60000124--60000161 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
60000114 AGGACTTGCA
*
60000124 TACTGTTTACTGTTATTG
1 TACTGTTTACTGTTACTG
60000142 TACTGTTTACTGTTACTG
1 TACTGTTTACTGTTACTG
60000160 TA
1 TA
60000162 ATGGGCCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.13, G:0.16, T:0.53
Consensus pattern (18 bp):
TACTGTTTACTGTTACTG
Found at i:60007011 original size:22 final size:22
Alignment explanation
Indices: 60006958--60007017 Score: 84
Period size: 23 Copynumber: 2.7 Consensus size: 22
60006948 CCTGAGCTAA
***
60006958 TGAACAGTAAGCTCTTTTGAGC
1 TGAACAGTAAGCTCTGGCGAGC
60006980 TGAAACAGTAAGCTCTGGCGAGC
1 TG-AACAGTAAGCTCTGGCGAGC
60007003 TGAACAGTAAGCTCT
1 TGAACAGTAAGCTCT
60007018 TACGAGCTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 15 0.44
23 19 0.56
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTGGCGAGC
Found at i:60007023 original size:22 final size:22
Alignment explanation
Indices: 60006958--60007025 Score: 91
Period size: 22 Copynumber: 3.0 Consensus size: 22
60006948 CCTGAGCTAA
**
60006958 TGAACAGTAAGCTCTTTTGAGC
1 TGAACAGTAAGCTCTTACGAGC
**
60006980 TGAAACAGTAAGCTCTGGCGAGC
1 TG-AACAGTAAGCTCTTACGAGC
60007003 TGAACAGTAAGCTCTTACGAGC
1 TGAACAGTAAGCTCTTACGAGC
60007025 T
1 T
60007026 AATATATTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
22 21 0.52
23 19 0.47
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTTACGAGC
Found at i:60020492 original size:27 final size:27
Alignment explanation
Indices: 60020462--60020667 Score: 155
Period size: 27 Copynumber: 7.6 Consensus size: 27
60020452 CAAATTGTAA
* *
60020462 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTACAG
**
60020489 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCAAATTACCCTCGATTTACAG
* ** * *
60020516 AATTACTATTTTACCCTTGATTTATAG
1 AATTACCAAATTACCCTCGATTTACAG
* ** * *
60020543 AATTACTATTTTACCCTTGATTTATAG
1 AATTACCAAATTACCCTCGATTTACAG
* ** *
60020570 AATTACTATTTTACCCTCGATTTACAA
1 AATTACCAAATTACCCTCGATTTACAG
* * * *
60020597 AATTACTAAAATACCCTCGGTTTACAA
1 AATTACCAAATTACCCTCGATTTACAG
* *
60020624 AATTGCCAAAATACCCTCGATCATTA-A-
1 AATTACCAAATTACCCTCGAT--TTACAG
*
60020651 AATTACCAAAATACCCT
1 AATTACCAAATTACCCT
60020668 AGTCTGTAAA
Statistics
Matches: 159, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
27 155 0.97
28 1 0.01
29 3 0.02
ACGTcount: A:0.35, C:0.22, G:0.07, T:0.36
Consensus pattern (27 bp):
AATTACCAAATTACCCTCGATTTACAG
Found at i:60020603 original size:54 final size:54
Alignment explanation
Indices: 60020473--60020627 Score: 211
Period size: 54 Copynumber: 2.9 Consensus size: 54
60020463 ATTACCAAAG
*
60020473 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * *
60020527 TACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * *** * *
60020581 TACCCTCGATTTACAAAATTACTAAAATACCCTCGGTTTACAAAATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATT
60020628 GCCAAAATAC
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
Found at i:60020656 original size:81 final size:81
Alignment explanation
Indices: 60020428--60020644 Score: 227
Period size: 81 Copynumber: 2.7 Consensus size: 81
60020418 AATACTTTAG
* * * * * ** *
60020428 TTTACCAAATTACTGAAATACCTTCAAATTGTAAAATTACCAAAGTACCCTCGATTTATAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATT
60020493 ACCATTTTACCCTCGA
66 ACCATTTTACCCTCGA
* *** * * * * *** *
60020509 TTTACAGAATTACTATTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTATAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATT
*
60020574 ACTATTTTACCCTCGA
66 ACCATTTTACCCTCGA
* *
60020590 TTTACAAAATTACTAAAATACCCTCGGTTTACAAAATTGCCAAAATACCCTCGAT
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGAT
60020645 CATTAAAATT
Statistics
Matches: 104, Mismatches: 32, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 104 1.00
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (81 bp):
TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATT
ACCATTTTACCCTCGA
Found at i:60020666 original size:81 final size:80
Alignment explanation
Indices: 60020456--60020855 Score: 290
Period size: 81 Copynumber: 5.0 Consensus size: 80
60020446 TACCTTCAAA
* * *** *
60020456 TTGTAAAATTACC-AAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATT
1 TTGTAAAATTACCGAAA-TACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTACAAAATT
*** *
60020520 ACTATTTTACCCTTGAT
65 ACTAAAATACCC-TGGT
* * * ** * * * * ***
60020537 TTATAGAATTA-CTATTTTACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATT
1 TTGTAAAATTACCGA-AATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTACAAAATT
60020601 ACTAAAATACCCTCGGT
65 ACTAAAATACCCT-GGT
** * * * * * **
60020618 TTACAAAATTGCCAAAATACCCTCGATCAT-TAAAATTACCAAAATACCCTAG-TCTGTAAAATT
1 TTGTAAAATTACCGAAATACCCTCGAT-TTGTAAAATTACCAAAATACCCTCGATTTACAAAATT
*
60020681 GCTAAAATACCCTTGGT
65 ACTAAAATACCC-TGGT
* * * **
60020698 TTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATT
1 TTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGA-TTTACAAAATT
*
60020762 ACCAAAATACCACTGGT
65 ACTAAAATACC-CTGGT
* * * *
60020779 TTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATA-CCTCTGATTTACAAAGTT
1 TTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTC-GATTTACAAAATT
*
60020843 ACAAAAATACCCT
65 ACTAAAATACCCT
60020856 TGACTTTCTA
Statistics
Matches: 256, Mismatches: 51, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
79 1 0.00
80 68 0.27
81 182 0.71
82 5 0.02
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (80 bp):
TTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTACAAAATTA
CTAAAATACCCTGGT
Found at i:60020715 original size:27 final size:27
Alignment explanation
Indices: 60020595--60020941 Score: 211
Period size: 27 Copynumber: 12.8 Consensus size: 27
60020585 CTCGATTTAC
* **
60020595 AAAATTACTAAAATACCCTCGGTTTAC
1 AAAATTACTAAAATACCCTTGGTTTGT
* * * * *
60020622 AAAATTGCCAAAATACCCTCGATCAT-T
1 AAAATTACTAAAATACCCTTGGT-TTGT
* * *
60020649 AAAATTACCAAAATACCC-TAGTCTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
*
60020675 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* ***
60020702 AAAATTA-TCGAAATACCCTCAATTTGT
1 AAAATTACT-AAAATACCCTTGGTTTGT
* * *
60020729 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
*
60020756 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACTAAAATACC-CTTGGTTTGT
* * * *
60020783 GAAATTACTGAAATACCCTCGATTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* **
60020810 AAAATTACTAAAATA-CCTCTGATTTAC
1 AAAATTACTAAAATACCCT-TGGTTTGT
* * * *
60020837 AAAGTTACAAAAATACCCTTGACTTTCT
1 AAAATTACTAAAATACCCTTG-GTTTGT
* * ***
60020865 AAAAATTA-TGGAAATACCATTGGATTAAC
1 -AAAATTACT-AAAATACCCTTGG-TTTGT
*
60020894 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * * *
60020921 AGATTTACCAAAACACCCTTG
1 AAAATTACTAAAATACCCTTG
60020942 TAGGATGAAA
Statistics
Matches: 249, Mismatches: 57, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
25 1 0.00
26 23 0.09
27 179 0.72
28 27 0.11
29 19 0.08
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGGTTTGT
Found at i:60020851 original size:54 final size:52
Alignment explanation
Indices: 60020461--60020855 Score: 199
Period size: 54 Copynumber: 7.3 Consensus size: 52
60020451 TCAAATTGTA
* * * * ***
60020461 AAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAC
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCT-GATTTAC
* *** * * * *** *
60020514 AGAATTACTATTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTAT
1 A-AATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCC-TGATTTAC
* *** ** *
60020568 AGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGGTTTAC
1 A-AATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCT-GATTTAC
* * *
60020622 AAAATTGCCAAAATACCCTCGATCAT-TAAAATTACCAAAATACCCT-AGTCTGTA-
1 -AAATTACCAAAATACCCTCGAT-TTGTAAAATTACTAAAATACCCTGA-T-T-TAC
* * * * * *
60020676 AAATTGCTAAAATACCCTTGGTTTGTAAAATTA-TCGAAATACCCTCAATTTGTA-
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACT-AAAATACCCT-GA-TT-TAC
* * * **
60020730 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCTCGA-TTTGTAAAATTACTAAAATACC-CTGATTT-AC
**
60020784 AAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCTCTGATTTAC
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACC-CTGATTTAC
*
60020837 AAAGTTACAAAAATACCCT
1 AAA-TTACCAAAATACCCT
60020856 TGACTTTCTA
Statistics
Matches: 272, Mismatches: 51, Indels: 37
0.76 0.14 0.10
Matches are distributed among these distances:
52 2 0.01
53 44 0.16
54 215 0.79
55 11 0.04
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.34
Consensus pattern (52 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTGATTTAC
Found at i:60020912 original size:57 final size:54
Alignment explanation
Indices: 60020784--60020914 Score: 140
Period size: 57 Copynumber: 2.4 Consensus size: 54
60020774 CTGGTTTGTG
* * *
60020784 AAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCTCTGATTTACA
1 AAATTACTGAAATACCCTTGATTTCTAAAATTACTAAAATACCTCTGATTAACA
* ** *
60020838 AAGTTACAAAAATACCCTTGACTTTCTAAAAATTA-TGGAAATACCAT-TGGATTAACA
1 AAATTACTGAAATACCCTTGA-TTTCT-AAAATTACT-AAAATACC-TCT-GATTAACA
60020895 AAATTACTGAAATACCCTTG
1 AAATTACTGAAATACCCTTG
60020915 GTTTGTAGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
54 17 0.27
55 5 0.08
56 15 0.24
57 25 0.40
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACTGAAATACCCTTGATTTCTAAAATTACTAAAATACCTCTGATTAACA
Found at i:60021877 original size:52 final size:51
Alignment explanation
Indices: 60021799--60021934 Score: 197
Period size: 52 Copynumber: 2.7 Consensus size: 51
60021789 GAGGAAGTGC
*
60021799 AAAAGGGCTTATGCCCCAGTTTATTGAAAAAGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAAGGCTT-TGCCCCAGTTTACCG
* * *
60021851 AAAAGGGTTTATGCCCTAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAAGGCTTTGCCCCAGTTTACCG
60021902 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAA-AGGCT
60021935 AGGCCTCCAA
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
48 4 0.05
49 9 0.12
50 7 0.09
51 23 0.30
52 33 0.43
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAAGGCTTTGCCCCAGTTTACCG
Found at i:60021896 original size:25 final size:26
Alignment explanation
Indices: 60021799--60021934 Score: 163
Period size: 26 Copynumber: 5.3 Consensus size: 26
60021789 GAGGAAGTGC
60021799 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
60021825 AAAAAGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
60021851 AAAAGGGTTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
60021877 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
60021902 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
60021925 AAAAGAGGCT
1 AAAAG-GGCT
60021935 AGGCCTCCAA
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 30 0.32
26 53 0.56
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:60022177 original size:31 final size:31
Alignment explanation
Indices: 60022139--60022217 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
60022129 CGTTTACAGT
60022139 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
60022170 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
60022201 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCAGCCCAGT
60022218 AACCGCTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:60024511 original size:27 final size:27
Alignment explanation
Indices: 60024492--60024621 Score: 134
Period size: 27 Copynumber: 4.8 Consensus size: 27
60024482 ATTACCAAAG
* *
60024492 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCAATTTATAGAATTACCATTT
* *
60024519 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCAATTTATAGAATTACCATTT
**
60024546 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCAATTTATAGAATTACCATTT
** * * *
60024573 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCAATTTATAGAATTACCATTT
* * *
60024600 TACCCTCGATTTACAAAATTAC
1 TACCCTCAATTTATAGAATTAC
60024622 TAAAATACCC
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCAATTTATAGAATTACCATTT
Found at i:60024550 original size:54 final size:54
Alignment explanation
Indices: 60024492--60024650 Score: 203
Period size: 54 Copynumber: 2.9 Consensus size: 54
60024482 ATTACCAAAG
*
60024492 TACCCTCAATTTATAGAATTA-TCGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCAATTTATAGAATTACT-GTTTTACCCTCGATTTACAAAATTACCATTT
* *
60024546 TACCCTCAATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
* * * **** *
60024600 TACCCTCGATTTACAAAATTACTAAAATACCCTCGGTTTACAAAATTACCA
1 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCA
60024651 AAATACCCTC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 90 0.99
55 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.38
Consensus pattern (54 bp):
TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
Found at i:60024622 original size:27 final size:27
Alignment explanation
Indices: 60024516--60024648 Score: 167
Period size: 27 Copynumber: 4.9 Consensus size: 27
60024506 AGAATTATCG
* *
60024516 TTTTACCCTCGATTTACAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTACTA
* * * *
60024543 TTTTACCCTCAATTTATAGAATTACTG
1 TTTTACCCTCGATTTACAAAATTACTA
*
60024570 TTTTACCCTTGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAAAATTACTA
60024597 TTTTACCCTCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAAAATTACTA
*** *
60024624 AAATACCCTCGGTTTACAAAATTAC
1 TTTTACCCTCGATTTACAAAATTAC
60024649 CAAAATACCC
Statistics
Matches: 92, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAAAATTACTA
Found at i:60024653 original size:27 final size:27
Alignment explanation
Indices: 60024600--60024846 Score: 221
Period size: 27 Copynumber: 9.2 Consensus size: 27
60024590 ATTACTATTT
* ** *
60024600 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGGTTTGTAAAATTACCAAAA
**
60024627 TACCCTCGGTTTACAAAATTACCAAAA
1 TACCCTCGGTTTGTAAAATTACCAAAA
** **
60024654 TACCCTCAATCAGTAAAATTACCAAAA
1 TACCCTCGGTTTGTAAAATTACCAAAA
* * * *
60024681 TACCCT-AGTCTGTAAAATTGCTAAAA
1 TACCCTCGGTTTGTAAAATTACCAAAA
* * *
60024707 TACCCTTGGTTTGTAAAATTATCGAAA
1 TACCCTCGGTTTGTAAAATTACCAAAA
***
60024734 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGGTTTGTAAAATTACCAAAA
*
60024761 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GGTTTGTAAAATTACCAAAA
* * *
60024788 TACCACT-AGTTTGTGAAATTACCGAAA
1 TACC-CTCGGTTTGTAAAATTACCAAAA
* *
60024815 TACCTTCGATTTGTAAAATTACCAAAA
1 TACCCTCGGTTTGTAAAATTACCAAAA
60024842 TACCC
1 TACCC
60024847 CAGGTTTACA
Statistics
Matches: 183, Mismatches: 32, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
26 23 0.13
27 159 0.87
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGGTTTGTAAAATTACCAAAA
Found at i:60024658 original size:54 final size:54
Alignment explanation
Indices: 60024479--60024931 Score: 188
Period size: 54 Copynumber: 8.4 Consensus size: 54
60024469 TTCAAATTGT
* * * ** *
60024479 AAAATTACCAAAGTACCCTCAATTTATAGAATTATCGT--TTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTA-C-TAAAATACCCTCGGTTTAC
* *** * * **** * *
60024533 AGAATTACCATTTTACCCTCAATTTATAGAATTACTGTTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCTCGGTTTAC
* *** *
60024587 AAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCTCGGTTTAC
* * * * * **
60024641 AAAATTACCAAAATACCCTC-AATCAGTAAAATTACCAAAATACCCT-AGTCTGT
1 AAAATTACCAAAATACCCTCGATTTA-TAAAATTACTAAAATACCCTCGGTTTAC
* * * * * * *** **
60024694 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTA-TCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACT-AAAATACCCTCGGTTTAC
* * * * **
60024748 AAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACT-AGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTATAAAATTACTAAAATACC-CTCGGTTTAC
* * * * *
60024802 GAAATTACCGAAATACCTTCGATTTGTAAAATTACCAAAATACCC-CAGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCTC-GGTTTAC
* * * * * *
60024856 AAAGTTA-CAGAAATACCCTTGACTTTCTAAAAATTA-TGGAAATACCATTGGTTTAAC
1 AAAATTACCA-AAATACCCTCGA-TTTAT-AAAATTACT-AAAATACCCTCGGTTT-AC
**
60024913 AAAATTACTGAAATACCCT
1 AAAATTACCAAAATACCCT
60024932 TAGTTTGTAG
Statistics
Matches: 313, Mismatches: 67, Indels: 35
0.75 0.16 0.08
Matches are distributed among these distances:
52 1 0.00
53 43 0.14
54 225 0.72
55 8 0.03
56 19 0.06
57 17 0.05
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCTCGGTTTAC
Found at i:60024807 original size:81 final size:81
Alignment explanation
Indices: 60024614--60024847 Score: 285
Period size: 81 Copynumber: 2.9 Consensus size: 81
60024604 CTCGATTTAC
* ** ** * * **
60024614 AAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTACCAA
60024679 AATA-CCCTAGTCTGT
66 AATACCCCTAGTCTGT
* * * *
60024694 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTATCGAAATACCCTTAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTACCAA
*
60024759 AATACCCCTAGTTTGT
66 AATACCCCTAGTCTGT
* *
60024775 AAAATTACCAAAATACCAC-TAGTTTGTGAAATTACCGAAATA-CCTTCGATTTGTAAAATTACC
1 AAAATTACCAAAATACC-CTTAGTTTGTAAAATTACCGAAATACCCTT-AATTTGTAAAATTACC
60024838 AAAATACCCC
64 AAAATACCCC
60024848 AGGTTTACAA
Statistics
Matches: 135, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
80 64 0.47
81 70 0.52
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTACCAA
AATACCCCTAGTCTGT
Found at i:60024870 original size:81 final size:79
Alignment explanation
Indices: 60024614--60024875 Score: 271
Period size: 81 Copynumber: 3.2 Consensus size: 79
60024604 CTCGATTTAC
** ** * * **
60024614 AAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
1 AAAATTAC-AAAATACCCTTAGTTTGTAAAATTACCGAAATACCTTCAATTTGTAAAATTACCAA
*
60024679 AATACCCTA-GTCTGT
65 AATACCCCAGGT-TGT
* * *
60024694 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTATCGAAATACCCTT-AATTTGTAAAATTACCA
1 AAAATTAC-AAAATACCCTTAGTTTGTAAAATTACCGAAATA-CCTTCAATTTGTAAAATTACCA
*
60024758 AAATACCCCTAGTTTGT
64 AAATACCCC-AGGTTGT
* *
60024775 AAAATTACCAAAATACCAC-TAGTTTGTGAAATTACCGAAATACCTTCGATTTGTAAAATTACCA
1 AAAATTA-CAAAATACC-CTTAGTTTGTAAAATTACCGAAATACCTTCAATTTGTAAAATTACCA
60024839 AAATACCCCAGGTT-T
64 AAATACCCCAGGTTGT
60024854 ACAAAGTTACAGAAATACCCTT
1 A-AAA-TTACA-AAATACCCTT
60024876 GACTTTCTAA
Statistics
Matches: 155, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
79 2 0.01
80 73 0.47
81 77 0.50
82 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (79 bp):
AAAATTACAAAATACCCTTAGTTTGTAAAATTACCGAAATACCTTCAATTTGTAAAATTACCAAA
ATACCCCAGGTTGT
Found at i:60024937 original size:28 final size:27
Alignment explanation
Indices: 60024609--60024937 Score: 116
Period size: 27 Copynumber: 12.1 Consensus size: 27
60024599 TTACCCTCGA
* **
60024609 TTTACAAAATTACTAAAATACCCTCGG
1 TTTACAAAATTACTGAAATACCCTTAG
** *
60024636 TTTACAAAATTACCAAAATACCCTCA-
1 TTTACAAAATTACTGAAATACCCTTAG
* * * **
60024662 ATCAGTAAAATTACCAAAATACCC-TAG
1 TTTA-CAAAATTACTGAAATACCCTTAG
* ** * * *
60024689 TCTGTAAAATTGCTAAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTAG
** *
60024716 TTTGTAAAATTA-TCGAAATACCCTTAA
1 TTTACAAAATTACT-GAAATACCCTTAG
** ** *
60024743 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACTGAAATACCCTTAG
** **
60024770 TTTGTAAAATTACCAAAATACCAC-TAG
1 TTTACAAAATTACTGAAATACC-CTTAG
*** * *
60024797 TTTGTGAAATTACCGAAATA-CCTTCG
1 TTTACAAAATTACTGAAATACCCTTAG
** ** *
60024823 ATTTGTAAAATTACCAAAATACCC-CAGG
1 -TTTACAAAATTACTGAAATACCCTTA-G
* * *
60024851 TTTACAAAGTTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTT-AG
* *
60024879 TTT-CTAAAAATTA-TGGAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCCTTAG
60024907 TTTAACAAAATTACTGAAATACCCTTAG
1 TTT-ACAAAATTACTGAAATACCCTTAG
60024935 TTT
1 TTT
60024938 GTAGATTTAC
Statistics
Matches: 241, Mismatches: 43, Indels: 35
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.00
26 24 0.10
27 166 0.69
28 31 0.13
29 18 0.07
30 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTAG
Found at i:60025082 original size:27 final size:27
Alignment explanation
Indices: 60024991--60025082 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
60024981 ACCCCTATTA
*
60024991 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
60025018 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
60025045 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
60025072 GGTAAAATGAC
1 GGTAAAATGAC
60025083 GAATGTGCCC
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
27 57 0.97
28 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:60025916 original size:25 final size:26
Alignment explanation
Indices: 60025881--60026015 Score: 163
Period size: 25 Copynumber: 5.3 Consensus size: 26
60025871 GAGGAAGTGC
60025881 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
60025907 AAAA-GGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
60025932 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
60025958 AAAAGGGCTT-TGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
60025983 AAAAGGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
60026006 AAAAGAGGCT
1 AAAAG-GGCT
60026016 AGGCCTCTAG
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 50 0.53
26 32 0.34
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:60025957 original size:51 final size:50
Alignment explanation
Indices: 60025881--60026010 Score: 194
Period size: 51 Copynumber: 2.6 Consensus size: 50
60025871 GAGGAAGTGC
* *
60025881 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGCTT-TGCCCCAATTTACCG
60025932 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAA-GGCTTTGCCCCAATTTACCG
*
60025983 AAAAGGGCTT-TGCCCTAG-TTATT-AAAAG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG
60026011 AGGCTAGGCC
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.05
49 5 0.07
50 7 0.09
51 53 0.71
52 5 0.07
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGCTTTGCCCCAATTTACCG
Found at i:60026262 original size:31 final size:31
Alignment explanation
Indices: 60026221--60026297 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
60026211 TATTTACAGT
* *
60026221 AAAGGTTTCGGCCTAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
60026252 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
60026283 AAAGGCTTCAGCCCA
1 AAAGGCTTCGGCCCA
60026298 GTAACCGTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:60034748 original size:30 final size:30
Alignment explanation
Indices: 60034714--60034810 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
60034704 TAAACTAAAA
*
60034714 TGAGCTAAGCCTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGACTTAGCTCGTGAGCTAAAGT
* * * * * *
60034744 TGAGCTGAGACTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGACTTAGCTCGTGAGCTAAAGT
** *
60034774 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGACTTAGCTCGTGAGCT-AAAGT
60034804 TGAGCTA
1 TGAGCTA
60034811 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 47 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (30 bp):
TGAGCTAAGACTTAGCTCGTGAGCTAAAGT
Found at i:60039164 original size:33 final size:34
Alignment explanation
Indices: 60039095--60039166 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 34
60039085 AACAGTGCAT
* * *
60039095 ACAGTAACAGTCTGGGCCTGAGCCCTATTCATTA
1 ACAGTAACAGTCTAGGCCTAAGCCCTATTCAGTA
60039129 ACAGT-ACAGTCTAGGCCTAAGCCCTATGT-AGTA
1 ACAGTAACAGTCTAGGCCTAAGCCCTAT-TCAGTA
60039162 ACAGT
1 ACAGT
60039167 GTGAGCCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 28 0.82
34 6 0.18
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (34 bp):
ACAGTAACAGTCTAGGCCTAAGCCCTATTCAGTA
Found at i:60044874 original size:18 final size:18
Alignment explanation
Indices: 60044851--60044888 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
60044841 ATCTAAGTAA
60044851 ATATTGCATTGTAGATTT
1 ATATTGCATTGTAGATTT
60044869 ATATTGCATTGTAGATTT
1 ATATTGCATTGTAGATTT
60044887 AT
1 AT
60044889 CATATCCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.05, G:0.16, T:0.50
Consensus pattern (18 bp):
ATATTGCATTGTAGATTT
Found at i:60046005 original size:72 final size:72
Alignment explanation
Indices: 60045900--60046035 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 72
60045890 CATGTTTACC
* ** * *
60045900 CGCACACATAGTGCCTTAGTAATGCGCATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCGTACAAATGCGCACACATAGTGACATTCAAATCCGCACACATAGTGCCAT
60045965 ACAAATT
66 ACAAATT
* * * *
60045972 CGCACACATAGTGCCGTACAAATTCGTACACATAGTGCCATTCAAATTCGCACACATAGTGCCA
1 CGCACACATAGTGCCGTACAAATGCGCACACATAGTGACATTCAAATCCGCACACATAGTGCCA
60046036 AAGCCATTTC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 55 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.24
Consensus pattern (72 bp):
CGCACACATAGTGCCGTACAAATGCGCACACATAGTGACATTCAAATCCGCACACATAGTGCCAT
ACAAATT
Found at i:60046035 original size:24 final size:24
Alignment explanation
Indices: 60045900--60046035 Score: 159
Period size: 24 Copynumber: 5.7 Consensus size: 24
60045890 CATGTTTACC
*
60045900 CGCACACATAGTGCC-TT-AGTAATG
1 CGCACACATAGTGCCATTCA--AATT
* * * *
60045924 CGCATACATATTGACATTCAAATC
1 CGCACACATAGTGCCATTCAAATT
*
60045948 CGCACACATAGTGCCATACAAATT
1 CGCACACATAGTGCCATTCAAATT
* *
60045972 CGCACACATAGTGCCGTACAAATT
1 CGCACACATAGTGCCATTCAAATT
*
60045996 CGTACACATAGTGCCATTCAAATT
1 CGCACACATAGTGCCATTCAAATT
60046020 CGCACACATAGTGCCA
1 CGCACACATAGTGCCA
60046036 AAGCCATTTC
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
24 93 0.97
25 2 0.02
26 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.24
Consensus pattern (24 bp):
CGCACACATAGTGCCATTCAAATT
Found at i:60047304 original size:15 final size:14
Alignment explanation
Indices: 60047278--60047313 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
60047268 CCTTTTCTTC
*
60047278 TTTTATTCATTCAT
1 TTTTATTAATTCAT
60047292 TTCTTATTAATTCAT
1 TT-TTATTAATTCAT
60047307 TTTTATT
1 TTTTATT
60047314 TGGATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTATTAATTCAT
Found at i:60052461 original size:68 final size:68
Alignment explanation
Indices: 60052388--60052537 Score: 164
Period size: 67 Copynumber: 2.2 Consensus size: 68
60052378 TCATGTGTAT
* * * * * *
60052388 AAGAGAGCTACGAGACATTATGATGTAGCTAGGTTGCATGGGTGATACTA-TG-TGTACACCATG
1 AAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGAGAAGGACACCATG
60052451 TAGAC
64 TAGAC
* * *
60052456 AAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGAGAAGGACACCATGT
1 AAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GAGAAGGACACCATGT
60052519 AGAC
65 AGAC
60052523 AAGAGAGCTACGAGA
1 AAGAGAGCTACGAGA
60052538 TAAACTGGCT
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
64 23 0.34
65 3 0.04
66 2 0.03
67 27 0.40
68 13 0.19
ACGTcount: A:0.32, C:0.16, G:0.31, T:0.21
Consensus pattern (68 bp):
AAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGAGAAGGACACCATGTA
GAC
Found at i:60071944 original size:46 final size:46
Alignment explanation
Indices: 60071877--60072098 Score: 274
Period size: 46 Copynumber: 4.8 Consensus size: 46
60071867 TGTAACCCGC
* * *
60071877 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCT-CAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCAT
* * *
60071923 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
60071973 CTC-T---CGAACTCAGACTCAACTCAACGAGTTCGAACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
60072016 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
60072062 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60072099 TGCCCAAACA
Statistics
Matches: 154, Mismatches: 12, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
42 1 0.01
43 8 0.05
44 1 0.01
46 109 0.71
47 26 0.17
49 2 0.01
50 6 0.04
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:60075617 original size:40 final size:40
Alignment explanation
Indices: 60075555--60075719 Score: 251
Period size: 40 Copynumber: 4.2 Consensus size: 40
60075545 CTAAGATCCA
* * * *
60075555 AAGGCATTTGTGCTAGTGACTATATTCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
*
60075595 AAGGCATTTGTGAGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
60075635 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
** *
60075675 AAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
60075714 AAGGCA
1 AAGGCA
60075720 CTTGGGTTTG
Statistics
Matches: 116, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 17 0.15
40 99 0.85
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
Found at i:60082243 original size:22 final size:21
Alignment explanation
Indices: 60082214--60082280 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 21
60082204 TGCACTAATG
60082214 AACAGAGAGCACTGAAGTGCT
1 AACAGAGAGCACTGAAGTGCT
*
60082235 ACACAGAGAGCAC-AAATGTGCT
1 A-ACAGAGAGCACTGAA-GTGCT
*
60082257 AATCAGAGAGCACTGACGTGCT
1 AA-CAGAGAGCACTGAAGTGCT
60082279 AA
1 AA
60082281 ATATCAAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 4 0.10
22 34 0.87
23 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.15
Consensus pattern (21 bp):
AACAGAGAGCACTGAAGTGCT
Found at i:60082291 original size:25 final size:24
Alignment explanation
Indices: 60082216--60082518 Score: 267
Period size: 25 Copynumber: 12.4 Consensus size: 24
60082206 CACTAATGAA
* *
60082216 CAGAGAGCACTGAAGTGCT-ACA-
1 CAGAGAGCACTGACGTGCTAATAT
** *
60082238 CAGAGAGCACAAATGTGCT-A-AT
1 CAGAGAGCACTGACGTGCTAATAT
60082260 CAGAGAGCACTGACGTGCTAAATAT
1 CAGAGAGCACTGACGTGCT-AATAT
* *
60082285 CAAAGAGCACTGGCGTGCTAATAAT
1 CAGAGAGCACTGACGTGCTAAT-AT
* *
60082310 CAGAGAGAACTGGCGTGCTAATATT
1 CAGAGAGCACTGACGTGCTAATA-T
* * *
60082335 CAGAGAGCACTGGCATGCTAGTATT
1 CAGAGAGCACTGACGTGCTAATA-T
*
60082360 CAAAGAGCACT-AGCGTGCTAATATT
1 CAGAGAGCACTGA-CGTGCTAATA-T
* * * *
60082385 TAGATAGCATTGGCGTGCTAATATT
1 CAGAGAGCACTGACGTGCTAATA-T
60082410 CAGAGAGCACT-AGCGTGCTAATATT
1 CAGAGAGCACTGA-CGTGCTAATA-T
*
60082435 CAGAGAGCACTGGCGTGCTAATAAT
1 CAGAGAGCACTGACGTGCTAAT-AT
* *
60082460 CAGATAGCACTGACATGCTAATAAT
1 CAGAGAGCACTGACGTGCTAAT-AT
*
60082485 TAGAGAGCACTGACGTGCTAATAAT
1 CAGAGAGCACTGACGTGCTAAT-AT
60082510 CAGAGAGCA
1 CAGAGAGCA
60082519 TGCTGAGGTC
Statistics
Matches: 236, Mismatches: 34, Indels: 19
0.82 0.12 0.07
Matches are distributed among these distances:
21 1 0.00
22 33 0.14
24 5 0.02
25 196 0.83
26 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (24 bp):
CAGAGAGCACTGACGTGCTAATAT
Found at i:60082327 original size:50 final size:50
Alignment explanation
Indices: 60082256--60082518 Score: 341
Period size: 50 Copynumber: 5.3 Consensus size: 50
60082246 ACAAATGTGC
* *
60082256 TAATCAGAGAGCACTGACGTGCTAA-ATATCAAAGAGCACTGGCGTGCTAA
1 TAATCAGAGAGCACTGGCGTGCTAATAT-TCAGAGAGCACTGGCGTGCTAA
* * *
60082306 TAATCAGAGAGAACTGGCGTGCTAATATTCAGAGAGCACTGGCATGCTAG
1 TAATCAGAGAGCACTGGCGTGCTAATATTCAGAGAGCACTGGCGTGCTAA
* * * * * *
60082356 TATTCAAAGAGCACTAGCGTGCTAATATTTAGATAGCATTGGCGTGCTAA
1 TAATCAGAGAGCACTGGCGTGCTAATATTCAGAGAGCACTGGCGTGCTAA
* *
60082406 TATTCAGAGAGCACTAGCGTGCTAATATTCAGAGAGCACTGGCGTGCTAA
1 TAATCAGAGAGCACTGGCGTGCTAATATTCAGAGAGCACTGGCGTGCTAA
* * * *
60082456 TAATCAGATAGCACTGACATGCTAATAATT-AGAGAGCACTGACGTGCTAA
1 TAATCAGAGAGCACTGGCGTGCTAAT-ATTCAGAGAGCACTGGCGTGCTAA
60082506 TAATCAGAGAGCA
1 TAATCAGAGAGCA
60082519 TGCTGAGGTC
Statistics
Matches: 186, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
50 181 0.97
51 5 0.03
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (50 bp):
TAATCAGAGAGCACTGGCGTGCTAATATTCAGAGAGCACTGGCGTGCTAA
Found at i:60082354 original size:75 final size:75
Alignment explanation
Indices: 60082259--60082518 Score: 346
Period size: 75 Copynumber: 3.5 Consensus size: 75
60082249 AATGTGCTAA
* *
60082259 TCAGAGAGCACTGACGTGCTAA-ATATCAAAGAGCACTGGCGTGCTAATAATCAGAGAGAACTGG
1 TCAGAGAGCACTGACGTGCTAATAT-TCAAAGAGCACTGGCGTGCTAATAATCAGATAGCACTGG
60082323 CGTGCTAATAT
65 CGTGCTAATAT
* * * * * * *
60082334 TCAGAGAGCACTGGCATGCTAGTATTCAAAGAGCACTAGCGTGCTAATATTTAGATAGCATTGGC
1 TCAGAGAGCACTGACGTGCTAATATTCAAAGAGCACTGGCGTGCTAATAATCAGATAGCACTGGC
60082399 GTGCTAATAT
66 GTGCTAATAT
* *
60082409 TCAGAGAGCACT-AGCGTGCTAATATTCAGAGAGCACTGGCGTGCTAATAATCAGATAGCACTGA
1 TCAGAGAGCACTGA-CGTGCTAATATTCAAAGAGCACTGGCGTGCTAATAATCAGATAGCACTGG
*
60082473 CATGCTAATAAT
65 CGTGCTAAT-AT
* *
60082485 T-AGAGAGCACTGACGTGCTAATAATCAGAGAGCA
1 TCAGAGAGCACTGACGTGCTAATATTCAAAGAGCA
60082519 TGCTGAGGTC
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
75 155 0.96
76 6 0.04
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (75 bp):
TCAGAGAGCACTGACGTGCTAATATTCAAAGAGCACTGGCGTGCTAATAATCAGATAGCACTGGC
GTGCTAATAT
Found at i:60095010 original size:9 final size:10
Alignment explanation
Indices: 60094990--60095022 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
60094980 TTATGATACC
60094990 TCATTGCATA
1 TCATTGCATA
60095000 TCATT-CATA
1 TCATTGCATA
60095009 TCATTGCAATA
1 TCATTGC-ATA
60095020 TCA
1 TCA
60095023 GAATGTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.43
10 6 0.29
11 6 0.29
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.39
Consensus pattern (10 bp):
TCATTGCATA
Found at i:60102677 original size:31 final size:31
Alignment explanation
Indices: 60102639--60102701 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
60102629 CTTTTCACAC
60102639 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
60102670 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
60102701 T
1 T
60102702 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:60103001 original size:25 final size:24
Alignment explanation
Indices: 60102895--60103040 Score: 206
Period size: 25 Copynumber: 6.0 Consensus size: 24
60102885 GCTTTATCAT
*
60102895 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
60102920 ATAACTAGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
60102943 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
60102967 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
60102992 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
60103017 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
60103041 CACTTCCTCC
Statistics
Matches: 113, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 17 0.15
24 41 0.36
25 55 0.49
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60103115 original size:20 final size:20
Alignment explanation
Indices: 60103090--60103155 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
60103080 TATGAATACC
60103090 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
60103110 TCATGTGCATATCATGCATG
1 TCATGTGCATATCATACATA
60103130 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
60103150 CCATGT
1 TCATGT
60103156 TTATTAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:60103120 original size:11 final size:11
Alignment explanation
Indices: 60103090--60103144 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
60103080 TATGAATACC
60103090 TCATGTGCATA
1 TCATGTGCATA
*
60103101 TCA--TACATA
1 TCATGTGCATA
60103110 TCATGTGCATA
1 TCATGTGCATA
*
60103121 TCA--TGCATG
1 TCATGTGCATA
60103130 TCATGTGCATA
1 TCATGTGCATA
60103141 TCAT
1 TCAT
60103145 ACATACCATG
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:60103219 original size:25 final size:25
Alignment explanation
Indices: 60103191--60103238 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
60103181 CATATTTACC
* * *
60103191 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
*
60103216 CCTATGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
60103239 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:60104255 original size:12 final size:12
Alignment explanation
Indices: 60104224--60104263 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
60104214 TGGGCTGGTT
60104224 TGGAAGAAGGAGA
1 TGGAAGAA-GAGA
* *
60104237 AGGAAGAAAAGA
1 TGGAAGAAGAGA
60104249 TGGAAGAAGAGA
1 TGGAAGAAGAGA
60104261 TGG
1 TGG
60104264 TAGATTCGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.50, C:0.00, G:0.42, T:0.07
Consensus pattern (12 bp):
TGGAAGAAGAGA
Found at i:60110661 original size:39 final size:39
Alignment explanation
Indices: 60110607--60110738 Score: 194
Period size: 39 Copynumber: 3.4 Consensus size: 39
60110597 TGCATGGTAT
60110607 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
*
60110646 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * * * *
60110685 TGGAAATATATCCAGACTTAAAGTCCGTAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
60110724 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
60110739 GCTAAGTCCC
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
38 2 0.02
39 83 0.98
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:60110763 original size:39 final size:39
Alignment explanation
Indices: 60110731--60110897 Score: 235
Period size: 39 Copynumber: 4.3 Consensus size: 39
60110721 TGCTGGAAAA
*
60110731 ATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * ** **
60110770 ATATTCAGGCTAAGTCCTAAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* **
60110809 ATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGCGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
60110848 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
60110887 ATATCCGGGCT
1 ATATCCGGGCT
60110898 TAAAGTCTCG
Statistics
Matches: 110, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:60110764 original size:78 final size:77
Alignment explanation
Indices: 60110607--60110897 Score: 191
Period size: 78 Copynumber: 3.7 Consensus size: 77
60110597 TGCATGGTAT
* * * * *
60110607 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGCTGGAAATATATCCGGACTTGAAGT-
1 TGGAAATATATCCAGACTT-AAGTCCGTAGGCATTAGTGCTGGAAATATATCCGGGC-T-AAGTC
* * **
60110670 CCGCAGGCTTTATGC
63 CCGAAGGATTCGTGC
* *
60110685 TGGAAATATATCCAGACTTAAAGTCCGTAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAGTCCC
1 TGGAAATATATCCAGACTT-AAGTCCGTAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCC
60110749 GAAGGAATTCGTGC
65 GAAGG-ATTCGTGC
* * * * * *** *
60110763 TGGTATTATATTCAGGC-TAAGTCC-TAAAGGCATTCGTGCTGGTGCTATATCTGGGCTAAGTCC
1 TGGAAATATATCCAGACTTAAGTCCGT--AGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCC
60110826 CGAAGGCATTCGTGC
64 CGAAGG-ATTCGTGC
*** * * * * *
60110841 TGGCGTTATATCCGGGC-TAAGTCCCGAAGGCATTCA-TGCTGGTATTATATCCGGGCT
1 TGGAAATATATCCAGACTTAAGT-CCGTAGGCATT-AGTGCTGGAAATATATCCGGGCT
60110898 TAAAGTCTCG
Statistics
Matches: 172, Mismatches: 32, Indels: 18
0.77 0.14 0.08
Matches are distributed among these distances:
75 1 0.01
76 10 0.06
77 14 0.08
78 145 0.84
79 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (77 bp):
TGGAAATATATCCAGACTTAAGTCCGTAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCG
AAGGATTCGTGC
Found at i:60120820 original size:18 final size:18
Alignment explanation
Indices: 60120797--60120832 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
60120787 TATCACTGGG
60120797 CCGAAGCCTTTTCATAAA
1 CCGAAGCCTTTTCATAAA
60120815 CCGAAGCCTTTTCATAAA
1 CCGAAGCCTTTTCATAAA
60120833 TCATATCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (18 bp):
CCGAAGCCTTTTCATAAA
Found at i:60120838 original size:49 final size:49
Alignment explanation
Indices: 60120766--60120863 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
60120756 GGTTATTGGG
60120766 CCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAA
1 CCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAA
* *
60120815 CCGAAGCCTTTTCATAAATCATATCACTGGGCTGGAGCCTTTTCATAAA
1 CCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAA
60120864 TCATTTCACT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (49 bp):
CCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTTTCATAAA
Found at i:60120857 original size:31 final size:31
Alignment explanation
Indices: 60120815--60120918 Score: 181
Period size: 31 Copynumber: 3.4 Consensus size: 31
60120805 TTTTCATAAA
*
60120815 CCGAAGCCTTTTCATAAATCATATCACTGGG
1 CCGAAGCCTTTTCATAAATCATTTCACTGGG
* *
60120846 CTGGAGCCTTTTCATAAATCATTTCACTGGG
1 CCGAAGCCTTTTCATAAATCATTTCACTGGG
60120877 CCGAAGCCTTTTCATAAATCATTTCACTGGG
1 CCGAAGCCTTTTCATAAATCATTTCACTGGG
60120908 CCGAAGCCTTT
1 CCGAAGCCTTT
60120919 ACTATAAACG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (31 bp):
CCGAAGCCTTTTCATAAATCATTTCACTGGG
Found at i:60121001 original size:42 final size:42
Alignment explanation
Indices: 60120942--60121033 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
60120932 TGGCCCATAG
* ** * *
60120942 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTACGCAA
60120984 GCCCATTTCAATATCACATGAAATACCAATGAATGTACGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTACGCAA
60121026 GCCCATTT
1 GCCCATTT
60121034 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTACGCAA
Found at i:60121207 original size:25 final size:26
Alignment explanation
Indices: 60121179--60121327 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
60121169 CTCTTTTAAT
60121179 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
60121204 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
60121229 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* ***
60121255 AACTGGGGCATAATCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
60121281 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
60121307 AACTGAGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
60121328 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 33 0.30
26 77 0.70
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Done.