Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 19 of 325
Found at i:7443270 original size:13 final size:13
Alignment explanation
Indices: 7443249--7443280 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7443239 GCTTGGATCA
*
7443249 TCATCAAATAAAT
1 TCATAAAATAAAT
7443262 TCATAAAATAAAT
1 TCATAAAATAAAT
7443275 TCATAA
1 TCATAA
7443281 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7443527 original size:30 final size:30
Alignment explanation
Indices: 7443492--7443549 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7443482 CCTCGACTCT
*
7443492 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7443522 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7443550 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7446004 original size:46 final size:46
Alignment explanation
Indices: 7445952--7446164 Score: 282
Period size: 46 Copynumber: 4.6 Consensus size: 46
7445942 GCTCTCTGAA
*
7445952 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
7445998 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* ** * * *
7446044 ATGAAAAGAATAAGACCATGGTTGAGAGATACCATAGCAACATGGC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * ** * * *
7446090 GGGAAGTGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
7446136 ATGAAATGTGTAAGACCATGGTTGAAAGA
1 ATGAAATGTGTAAGACCATGGTTGAAAGA
7446165 GACAATGGTT
Statistics
Matches: 143, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 143 1.00
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:7446172 original size:16 final size:16
Alignment explanation
Indices: 7446148--7446180 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7446138 GAAATGTGTA
*
7446148 AGACCATGGTTGAAAG
1 AGACAATGGTTGAAAG
7446164 AGACAATGGTTGAAAG
1 AGACAATGGTTGAAAG
7446180 A
1 A
7446181 TACCATAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.30, T:0.18
Consensus pattern (16 bp):
AGACAATGGTTGAAAG
Found at i:7446173 original size:62 final size:62
Alignment explanation
Indices: 7446102--7446226 Score: 178
Period size: 62 Copynumber: 2.0 Consensus size: 62
7446092 GAAGTGAATA
* * * * * **
7446102 AGACCATGGTTGAAAGATACCATGGCAGCGTGATATGAAATGTGTAAGACCATGGTTGAAAG
1 AGACAATGGTTGAAAGATACCATAGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAG
*
7446164 AGACAATGGTTGAAAGATACCATAGCAATGTGACATGAAAAGAATAAGACCATGGTTGAAAG
1 AGACAATGGTTGAAAGATACCATAGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAG
7446226 A
1 A
7446227 TACCATGGCA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.41, C:0.12, G:0.26, T:0.21
Consensus pattern (62 bp):
AGACAATGGTTGAAAGATACCATAGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAG
Found at i:7446185 original size:108 final size:107
Alignment explanation
Indices: 7446056--7446271 Score: 290
Period size: 108 Copynumber: 2.0 Consensus size: 107
7446046 GAAAAGAATA
* * * * **
7446056 AGACCATGGTTGAGAGATACCATAGCAACATGGCGGGAAGTGAATAAGACCATGGTTGAAAGATA
1 AGACAATGGTTGAAAGATACCATAGCAACATGACAGGAAAAGAATAAGACCATGGTTGAAAGATA
* * * *
7446121 CCATGGCAGCGTGATATG-AAATGTGTAAGACCATGGTTGAAAG
66 CCATGGCAACATGACA-GAAAATG-GTAAGACCATAGTTGAAAG
** *
7446164 AGACAATGGTTGAAAGATACCATAGCAATGTGACATGAAAAGAATAAGACCATGGTTGAAAGATA
1 AGACAATGGTTGAAAGATACCATAGCAACATGACAGGAAAAGAATAAGACCATGGTTGAAAGATA
7446229 CCATGGCAACATGACAGAAAATGGTAAGACCATAGTTGAAAG
66 CCATGGCAACATGACAGAAAATGGTAAGACCATAGTTGAAAG
7446271 A
1 A
7446272 CATTATGGCA
Statistics
Matches: 94, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
107 20 0.21
108 74 0.79
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.19
Consensus pattern (107 bp):
AGACAATGGTTGAAAGATACCATAGCAACATGACAGGAAAAGAATAAGACCATGGTTGAAAGATA
CCATGGCAACATGACAGAAAATGGTAAGACCATAGTTGAAAG
Found at i:7446221 original size:46 final size:45
Alignment explanation
Indices: 7446164--7446271 Score: 137
Period size: 46 Copynumber: 2.4 Consensus size: 45
7446154 TGGTTGAAAG
* **
7446164 AGACAATGGTTGAAAGATACCATAGCAATGTGACATGAAAA-GAATA
1 AGACCATGGTTGAAAGATACCATAGCAACATGACA-GAAAATG-ATA
* *
7446210 AGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGGTA
1 AGACCATGGTTGAAAGATACCATAGCAACATGACAGAAAATGATA
*
7446255 AGACCATAGTTGAAAGA
1 AGACCATGGTTGAAAGA
7446272 CATTATGGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
45 23 0.42
46 32 0.58
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.19
Consensus pattern (45 bp):
AGACCATGGTTGAAAGATACCATAGCAACATGACAGAAAATGATA
Found at i:7450927 original size:18 final size:18
Alignment explanation
Indices: 7450900--7450939 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7450890 TACATCATTC
*
7450900 TATTTGTTTTATT-TTTCA
1 TATTTATTTTATTATTT-A
7450918 TATTTATTTTATTATTTA
1 TATTTATTTTATTATTTA
7450936 TATT
1 TATT
7450940 CCAAGTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (18 bp):
TATTTATTTTATTATTTA
Found at i:7457673 original size:14 final size:14
Alignment explanation
Indices: 7457654--7457683 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7457644 TTATATCAAG
7457654 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
7457668 ACCAATCCAATTCA
1 ACCAATCCAAATCA
7457682 AC
1 AC
7457684 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:7458305 original size:30 final size:29
Alignment explanation
Indices: 7458240--7458365 Score: 83
Period size: 30 Copynumber: 4.2 Consensus size: 29
7458230 CAAAAAATAA
* * *
7458240 AAAATTATATTTTGACCCCCTAAACTTTTT
1 AAAATTACATTTTCA-CCCCTAAACTTTCT
* *
7458270 GAAATTGCATTTTCACCCCTAAACTTTCCT
1 AAAATTACATTTTCACCCCTAAACTTT-CT
** ** *
7458300 AAAATTACATTTTGGCCTATCAAC-TTCTT
1 AAAATTACATTTTCACCCCTAAACTTTC-T
* * * *
7458329 GAAATTATATTTTGACCCCTAAATTTTCT
1 AAAATTACATTTTCACCCCTAAACTTTCT
7458358 CAAAATTA
1 -AAAATTA
7458366 TGCTTGGCCC
Statistics
Matches: 72, Mismatches: 20, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
28 1 0.01
29 33 0.46
30 38 0.53
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (29 bp):
AAAATTACATTTTCACCCCTAAACTTTCT
Found at i:7458904 original size:12 final size:12
Alignment explanation
Indices: 7458887--7458946 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
7458877 TAACCCGAAG
7458887 AAGAAAGGAAAA
1 AAGAAAGGAAAA
7458899 AAGAAA-G-AAA
1 AAGAAAGGAAAA
*
7458909 AAGAAAGAAAAA
1 AAGAAAGGAAAA
* *
7458921 AAGGAGAGAAAAA
1 AA-GAAAGGAAAA
7458934 ATAGAAAAGGAAA
1 A-AG-AAAGGAAA
7458947 GAAAATAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 9 0.23
11 1 0.03
12 11 0.28
13 11 0.28
14 7 0.18
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (12 bp):
AAGAAAGGAAAA
Found at i:7458911 original size:10 final size:10
Alignment explanation
Indices: 7458896--7458951 Score: 53
Period size: 10 Copynumber: 5.4 Consensus size: 10
7458886 GAAGAAAGGA
7458896 AAAAAGAAAG
1 AAAAAGAAAG
7458906 AAAAAGAAAG
1 AAAAAGAAAG
7458916 AAAAA-AAGGAG
1 AAAAAGAA--AG
7458927 AGAAAA-AATAG
1 A-AAAAGAA-AG
*
7458938 AAAAGGAAAG
1 AAAAAGAAAG
7458948 AAAA
1 AAAA
7458952 TAAAATAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 2 0.05
10 24 0.60
11 8 0.20
12 6 0.15
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:7458913 original size:22 final size:23
Alignment explanation
Indices: 7458887--7458941 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
7458877 TAACCCGAAG
*
7458887 AAGAAAGGAAAAAA-GAAAGAAA
1 AAGAAAGAAAAAAAGGAAAGAAA
*
7458909 AAGAAAGAAAAAAAGGAGAGAAA
1 AAGAAAGAAAAAAAGGAAAGAAA
*
7458932 AA-ATAGAAAA
1 AAGAAAGAAAA
7458942 GGAAAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 20 0.69
23 9 0.31
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (23 bp):
AAGAAAGAAAAAAAGGAAAGAAA
Found at i:7458919 original size:19 final size:20
Alignment explanation
Indices: 7458884--7458949 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 20
7458874 TTTTAACCCG
*
7458884 AAGAAGAAAGGAA-AAAAGA
1 AAGAAGAAAGAAAGAAAAGA
7458903 AAGAA-AAAGAAAGAAAA-A
1 AAGAAGAAAGAAAGAAAAGA
*
7458921 AAGGAGAGAAAAAATAGAAAAGGA
1 AA-GA-AGAAAGAA-AGAAAA-GA
7458945 AAGAA
1 AAGAA
7458950 AATAAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
18 9 0.24
19 11 0.29
20 1 0.03
21 5 0.13
22 7 0.18
23 2 0.05
24 3 0.08
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (20 bp):
AAGAAGAAAGAAAGAAAAGA
Found at i:7458930 original size:13 final size:13
Alignment explanation
Indices: 7458898--7458940 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7458888 AGAAAGGAAA
7458898 AAAGAAAGAAAAAG
1 AAAGAAA-AAAAAG
*
7458912 AAAGAAAAAAAGG
1 AAAGAAAAAAAAG
* *
7458925 AGAGAAAAAATAG
1 AAAGAAAAAAAAG
7458938 AAA
1 AAA
7458941 AGGAAAGAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (13 bp):
AAAGAAAAAAAAG
Found at i:7459375 original size:15 final size:16
Alignment explanation
Indices: 7459357--7459386 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7459347 TAATTTAGTT
7459357 TTATTT-ATTTAAATA
1 TTATTTCATTTAAATA
7459372 TTATTTCATTTAAAT
1 TTATTTCATTTAAAT
7459387 TTAACTAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TTATTTCATTTAAATA
Found at i:7459952 original size:16 final size:17
Alignment explanation
Indices: 7459931--7459967 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7459921 GTGTTTTAAA
7459931 AAAATT-ATGTGTTTTC
1 AAAATTCATGTGTTTTC
*
7459947 AAAATTCTTGTGTTTTC
1 AAAATTCATGTGTTTTC
7459964 AAAA
1 AAAA
7459968 CAAGAGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.46
Consensus pattern (17 bp):
AAAATTCATGTGTTTTC
Found at i:7471803 original size:12 final size:12
Alignment explanation
Indices: 7471788--7471818 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7471778 TTCTCTTTTA
7471788 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
7471800 TTTTTCTTTCTC
1 TTTTTCTTTCCC
7471812 TTTTTCT
1 TTTTTCT
7471819 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:7471919 original size:16 final size:16
Alignment explanation
Indices: 7471898--7471928 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7471888 TTTATTATTT
7471898 TATTAACATAATATAA
1 TATTAACATAATATAA
*
7471914 TATTAATATAATATA
1 TATTAACATAATATA
7471929 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:7472869 original size:22 final size:23
Alignment explanation
Indices: 7472835--7472889 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
7472825 TTTTGCAGGT
* *
7472835 TTTTTGTGTTGTTGGTGATGTTG
1 TTTTGGTGCTGTTGGTGATGTTG
**
7472858 -TTTGGTGCTGTTTTTGATGTTG
1 TTTTGGTGCTGTTGGTGATGTTG
7472880 TTTTGGTGCT
1 TTTTGGTGCT
7472890 ATTTTGATGC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.04, C:0.04, G:0.33, T:0.60
Consensus pattern (23 bp):
TTTTGGTGCTGTTGGTGATGTTG
Found at i:7472905 original size:22 final size:23
Alignment explanation
Indices: 7472858--7472905 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
7472848 GGTGATGTTG
* * *
7472858 TTTGGTGCTGTTTTTGATGTTGT
1 TTTGGTGCTGATTTTGATGCTAT
7472881 TTTGGTGCT-ATTTTGATGCTAT
1 TTTGGTGCTGATTTTGATGCTAT
7472903 TTT
1 TTT
7472906 TTGTGGGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.08, C:0.06, G:0.25, T:0.60
Consensus pattern (23 bp):
TTTGGTGCTGATTTTGATGCTAT
Found at i:7472906 original size:23 final size:23
Alignment explanation
Indices: 7472850--7472898 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
7472840 GTGTTGTTGG
*
7472850 TGATGTTG-TTTGGTGCTGTTTT
1 TGATGTTGTTTTGGTGCTGATTT
7472872 TGATGTTGTTTTGGTGCT-ATTT
1 TGATGTTGTTTTGGTGCTGATTT
7472894 TGATG
1 TGATG
7472899 CTATTTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.08, C:0.04, G:0.31, T:0.57
Consensus pattern (23 bp):
TGATGTTGTTTTGGTGCTGATTT
Found at i:7488273 original size:50 final size:50
Alignment explanation
Indices: 7488198--7488374 Score: 248
Period size: 50 Copynumber: 3.5 Consensus size: 50
7488188 CCATGGAAAC
*
7488198 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAACTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
7488248 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAACTTCGGCTACACTTATCTGATCAAGGACAAATGA
7488298 AAGTGATAAGTGATAACTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAACTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * * *
7488348 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAACTTCGGCTAC
7488375 CTGATCAGTG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 90 0.80
51 23 0.20
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAACTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:7488390 original size:31 final size:31
Alignment explanation
Indices: 7488352--7488553 Score: 305
Period size: 31 Copynumber: 6.5 Consensus size: 31
7488342 AAATGACAAC
7488352 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
7488383 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
7488414 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
7488445 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
7488476 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* * **
7488507 CGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
7488538 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
7488554 TGACTACAAG
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 155 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:7488653 original size:47 final size:48
Alignment explanation
Indices: 7488584--7488709 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 48
7488574 CAAGTGATTT
*
7488584 CTGTATAAGACCATATCTGGGATATGGCATC-GATGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAG-TGAGATATATGACTA
* * *
7488631 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* *
7488679 C-GTGTAAGACCATAGT-TGGGCTATGGCATCA
1 CTGTATAAGACCATA-TCTGGGATATGGCATCA
7488710 TTATGTAAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
47 64 0.93
48 5 0.07
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:7495646 original size:61 final size:62
Alignment explanation
Indices: 7495550--7495666 Score: 164
Period size: 61 Copynumber: 1.9 Consensus size: 62
7495540 CAGAAAAAAC
* *
7495550 AATAAACTGTTTTAAATACTTACCACATGTCTATCAAAGATCAAAATACATGTCGATTGTCG
1 AATAAACTGTTTTAAATACTTACCACATGCCTATCAAAGAACAAAATACATGTCGATTGTCG
* * * * *
7495612 AATAAATTG-TTTAAATACTTACTACGTGCCTATCAAGGAACTAAATACATGTCGA
1 AATAAACTGTTTTAAATACTTACCACATGCCTATCAAAGAACAAAATACATGTCGA
7495667 ACATATATTC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
61 40 0.83
62 8 0.17
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (62 bp):
AATAAACTGTTTTAAATACTTACCACATGCCTATCAAAGAACAAAATACATGTCGATTGTCG
Found at i:7496257 original size:76 final size:79
Alignment explanation
Indices: 7496127--7496278 Score: 202
Period size: 77 Copynumber: 2.0 Consensus size: 79
7496117 AAAGAAAAAA
* *
7496127 CAAATTTTTATAAGCAGAAATTATAAATTTTTACAAACAAATTATGTTA-ATTTTTTATTATATA
1 CAAATTTTTATAAACAAAAATTATAAATTTTTACAAACAAATTATGTTATATTTTTTATTATATA
7496191 AATATTATTTATCT
66 AATATTATTTATCT
* * * * *
7496205 CAAATTTTTATAAATAAAAATTAT-TA-TTTTACAAACAAATTATTTTGTTTTTTTTATTATATA
1 CAAATTTTTATAAACAAAAATTATAAATTTTTACAAACAAATTATGTTATATTTTTTATTATATA
* *
7496268 ATTGTTATTTA
66 AATATTATTTA
7496279 CCTCTCAATA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
76 19 0.30
77 24 0.38
78 21 0.33
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (79 bp):
CAAATTTTTATAAACAAAAATTATAAATTTTTACAAACAAATTATGTTATATTTTTTATTATATA
AATATTATTTATCT
Found at i:7496443 original size:22 final size:22
Alignment explanation
Indices: 7496418--7496461 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7496408 TAATATATAA
7496418 TAAAAATT-ATATAAAAATATTT
1 TAAAAATTAAT-TAAAAATATTT
* *
7496440 TAAAATTTAATTAAATATATTT
1 TAAAAATTAATTAAAAATATTT
7496462 ATATTTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TAAAAATTAATTAAAAATATTT
Found at i:7496462 original size:21 final size:21
Alignment explanation
Indices: 7496432--7496479 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
7496422 AATTATATAA
7496432 AAATAT-TTTAAAATTTA-ATT
1 AAATATATTT-AAATTTATATT
*
7496452 AAATATATTTATATTTATATT
1 AAATATATTTAAATTTATATT
7496473 AAATATA
1 AAATATA
7496480 AAAATAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AAATATATTTAAATTTATATT
Found at i:7497792 original size:48 final size:48
Alignment explanation
Indices: 7497700--7497792 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
7497690 AATGATAGCC
* ** *
7497700 TCATAAATCTTAGTTTGGCTTTCACTATTCAAAAGGTATTGTGGTAGT
1 TCATAAATCTTAGTTTGACTTTCACTATTCAAAAACTATGGTGGTAGT
* * *
7497748 TCATAAATCTTGGTTTGACTTTCACTATTGAAAAACTGTGGTGGT
1 TCATAAATCTTAGTTTGACTTTCACTATTCAAAAACTATGGTGGT
7497793 TCAAAAGGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (48 bp):
TCATAAATCTTAGTTTGACTTTCACTATTCAAAAACTATGGTGGTAGT
Found at i:7497977 original size:17 final size:17
Alignment explanation
Indices: 7497955--7497987 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7497945 ACAATTTAAT
7497955 ATTGATATTAAAATTAC
1 ATTGATATTAAAATTAC
7497972 ATTGATATTAAAATTA
1 ATTGATATTAAAATTA
7497988 AAAATATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (17 bp):
ATTGATATTAAAATTAC
Found at i:7498203 original size:12 final size:12
Alignment explanation
Indices: 7498186--7498217 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
7498176 AACGTGAACC
7498186 AATGAAAACAAA
1 AATGAAAACAAA
*
7498198 AATGAAAACATA
1 AATGAAAACAAA
7498210 AATGAAAA
1 AATGAAAA
7498218 GTACCTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.72, C:0.06, G:0.09, T:0.12
Consensus pattern (12 bp):
AATGAAAACAAA
Found at i:7500518 original size:87 final size:87
Alignment explanation
Indices: 7500372--7500593 Score: 304
Period size: 87 Copynumber: 2.6 Consensus size: 87
7500362 CGCTTTCTCT
* *
7500372 TGCCAGTAATCAGGA-TATCAGTTTCCAATACTTTGATCTCCCTCATTGCTGATAGATCCATCTT
1 TGCCAGTAATC-GGAGTATCAGTTTCCAATACTTCGATCTCCCTCACTGCTGATAGATCCATCTT
7500436 -TCCAGTGACACAAAGGTTATCAG
65 AT-CAGTGACACAAAGGTTATCAG
* * *
7500459 TGCCAGTAATCGGAGTATCAGTTTCCAATGCTTCAATCTCCCTCACTGCTGATATATCCATCTTA
1 TGCCAGTAATCGGAGTATCAGTTTCCAATACTTCGATCTCCCTCACTGCTGATAGATCCATCTTA
**
7500524 TCAGTGACACAAAGGTTATCTT
66 TCAGTGACACAAAGGTTATCAG
* * * * *
7500546 TGCCAGTAATCAGAGCATCAGTTTCCCATTCTTCGATCTCCCCCACTG
1 TGCCAGTAATCGGAGTATCAGTTTCCAATACTTCGATCTCCCTCACTG
7500594 TTTTATCAAT
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
86 3 0.03
87 116 0.97
88 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (87 bp):
TGCCAGTAATCGGAGTATCAGTTTCCAATACTTCGATCTCCCTCACTGCTGATAGATCCATCTTA
TCAGTGACACAAAGGTTATCAG
Found at i:7500659 original size:75 final size:75
Alignment explanation
Indices: 7500521--7500662 Score: 167
Period size: 75 Copynumber: 1.9 Consensus size: 75
7500511 TATATCCATC
* * ** * * *
7500521 TTATCAGTGACACAAAGGTTATCTTTGCCAGTAATCAGAGCATCAGTTTCCCATTCTTCGATCTC
1 TTATCAATGACACAAAGATTATCAGTGCCAGTAATCAGAGCATAAGTTTCCAATACTTCGATCTC
7500586 CCCCACTGTT
66 CCCCACTGTT
* ** * * *
7500596 TTATCAATTACACAAAGATTATCAGTGCCAGTAATTGGGGCATAAGTTTCTAATACTTTGATCTC
1 TTATCAATGACACAAAGATTATCAGTGCCAGTAATCAGAGCATAAGTTTCCAATACTTCGATCTC
7500661 CC
66 CC
7500663 TCATTGCTGA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
75 54 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (75 bp):
TTATCAATGACACAAAGATTATCAGTGCCAGTAATCAGAGCATAAGTTTCCAATACTTCGATCTC
CCCCACTGTT
Found at i:7501558 original size:39 final size:39
Alignment explanation
Indices: 7501515--7501599 Score: 136
Period size: 39 Copynumber: 2.2 Consensus size: 39
7501505 TTCGCAGCTA
7501515 CAAGCTTTGGTTTCTTTT-CCTTGACTAGCTTTGGAGTTG
1 CAAGCTTTGGTTTCTTTTCCCTT-ACTAGCTTTGGAGTTG
* *
7501554 CAAGCCTTGGTTTCTTTTCCCTTACTTGCTTTGGAGTTG
1 CAAGCTTTGGTTTCTTTTCCCTTACTAGCTTTGGAGTTG
7501593 CAAGCTT
1 CAAGCTT
7501600 CAGTGTGTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
39 38 0.90
40 4 0.10
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.45
Consensus pattern (39 bp):
CAAGCTTTGGTTTCTTTTCCCTTACTAGCTTTGGAGTTG
Found at i:7512080 original size:18 final size:18
Alignment explanation
Indices: 7512039--7512085 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7512029 TAAAAAGAAA
* *
7512039 CCTCATCAGACTCGTCAT
1 CCTCATCAGAATCATCAT
* *
7512057 CGTCATCAGAATCATCTT
1 CCTCATCAGAATCATCAT
7512075 CCTCATCAGAA
1 CCTCATCAGAA
7512086 CCACTCTCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.28, C:0.34, G:0.11, T:0.28
Consensus pattern (18 bp):
CCTCATCAGAATCATCAT
Found at i:7524809 original size:21 final size:21
Alignment explanation
Indices: 7524783--7524858 Score: 73
Period size: 21 Copynumber: 3.3 Consensus size: 21
7524773 ACGTTAATTT
7524783 ATTATTTGTTAAATAAATATA
1 ATTATTTGTTAAATAAATATA
*
7524804 ATTATTT-TTATATGCAATATATAA
1 ATTATTTGTTAAAT--AA-ATAT-A
7524828 TTTATTATTTGTTAAATAAATATA
1 ---ATTATTTGTTAAATAAATATA
7524852 ATTATTT
1 ATTATTT
7524859 TTGTATGCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 16
0.71 0.03 0.25
Matches are distributed among these distances:
20 5 0.11
21 14 0.31
22 2 0.04
23 4 0.09
24 2 0.04
25 4 0.09
26 2 0.04
27 7 0.16
28 5 0.11
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (21 bp):
ATTATTTGTTAAATAAATATA
Found at i:7524822 original size:25 final size:25
Alignment explanation
Indices: 7524794--7524877 Score: 95
Period size: 25 Copynumber: 3.4 Consensus size: 25
7524784 TTATTTGTTA
*
7524794 AATAAATATAATTATTTTTATATGC
1 AATAAATATAATTATTTTTGTATGC
*
7524819 AAT--ATATAATTTATTATTTGT-T-A
1 AATAAATATAA-TTATT-TTTGTATGC
7524842 AATAAATATAATTATTTTTGTATGC
1 AATAAATATAATTATTTTTGTATGC
*
7524867 AATATATATAA
1 AATAAATATAA
7524878 AACATAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
23 14 0.29
24 12 0.24
25 23 0.47
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (25 bp):
AATAAATATAATTATTTTTGTATGC
Found at i:7524829 original size:23 final size:23
Alignment explanation
Indices: 7524799--7524874 Score: 84
Period size: 23 Copynumber: 3.2 Consensus size: 23
7524789 TGTTAAATAA
*
7524799 ATATAATTATTTTTATATGCAAT
1 ATATAATTATTTTTGTATGCAAT
*
7524822 ATATAATTTATTATTTGT-T-AAAT
1 ATATAA-TTATT-TTTGTATGCAAT
7524845 AAATATAATTATTTTTGTATGCAAT
1 --ATATAATTATTTTTGTATGCAAT
7524870 ATATA
1 ATATA
7524875 TAAAACATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
23 19 0.43
24 12 0.27
25 13 0.30
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (23 bp):
ATATAATTATTTTTGTATGCAAT
Found at i:7524829 original size:48 final size:48
Alignment explanation
Indices: 7524777--7524874 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
7524767 ATAAATACGT
7524777 TAATTTATTATTTGTTAAATAAATATAATTATTTTTATATGCAATATA
1 TAATTTATTATTTGTTAAATAAATATAATTATTTTTATATGCAATATA
*
7524825 TAATTTATTATTTGTTAAATAAATATAATTATTTTTGTATGCAATATA
1 TAATTTATTATTTGTTAAATAAATATAATTATTTTTATATGCAATATA
7524873 TA
1 TA
7524875 TAAAACATAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (48 bp):
TAATTTATTATTTGTTAAATAAATATAATTATTTTTATATGCAATATA
Found at i:7524849 original size:27 final size:26
Alignment explanation
Indices: 7524777--7524862 Score: 87
Period size: 24 Copynumber: 3.6 Consensus size: 26
7524767 ATAAATACGT
7524777 TAATTTATTATTTGTTAAATAA-ATA
1 TAATTTATTATTTGTTAAATAATATA
* ***
7524802 TAA-TTATT-TTT-ATATGCAATATA
1 TAATTTATTATTTGTTAAATAATATA
7524825 TAATTTATTATTTGTTAAATAA-ATA
1 TAATTTATTATTTGTTAAATAATATA
7524850 TAA-TTATT-TTTGT
1 TAATTTATTATTTGT
7524863 ATGCAATATA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
22 4 0.08
23 14 0.29
24 15 0.31
25 12 0.24
26 4 0.08
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.55
Consensus pattern (26 bp):
TAATTTATTATTTGTTAAATAATATA
Found at i:7525535 original size:16 final size:16
Alignment explanation
Indices: 7525504--7525551 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
7525494 TGAAAATTTT
*
7525504 AAAAATATTAAAAAAATA
1 AAAAATATT--AAAACTA
*
7525522 AAAATTTATTAAAACTA
1 AAAA-ATATTAAAACTA
7525539 AAAAATATTAAAA
1 AAAAATATTAAAA
7525552 AATAATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 8 0.31
17 10 0.38
18 4 0.15
19 4 0.15
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAATATTAAAACTA
Found at i:7534434 original size:50 final size:50
Alignment explanation
Indices: 7534376--7534475 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
7534366 TATTATTCAG
* **
7534376 ATTCACAATTTAAATAGTCTTTAGTTTTAATTATAAAAACTTATATAAAC
1 ATTCACAATTTAAATAGTCTGTAACTTTAATTATAAAAACTTATATAAAC
7534426 ATTCACAATTTAAATAGTCTGTAACTTTAATTATAAAAACTTATATAAAC
1 ATTCACAATTTAAATAGTCTGTAACTTTAATTATAAAAACTTATATAAAC
7534476 TTAAGTTAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (50 bp):
ATTCACAATTTAAATAGTCTGTAACTTTAATTATAAAAACTTATATAAAC
Found at i:7534476 original size:25 final size:25
Alignment explanation
Indices: 7534401--7534477 Score: 61
Period size: 25 Copynumber: 3.1 Consensus size: 25
7534391 AGTCTTTAGT
7534401 TTTAATTATAAAAACTTATATAAAC
1 TTTAATTATAAAAACTTATATAAAC
* * * * *
7534426 ATTCACAATT-TAAATA-GTCTGT-AAC
1 -TT--TAATTATAAAAACTTATATAAAC
7534451 TTTAATTATAAAAACTTATATAAAC
1 TTTAATTATAAAAACTTATATAAAC
7534476 TT
1 TT
7534478 AAGTTAGACA
Statistics
Matches: 36, Mismatches: 10, Indels: 11
0.63 0.18 0.19
Matches are distributed among these distances:
22 4 0.11
23 5 0.14
24 5 0.14
25 8 0.22
26 5 0.14
27 5 0.14
28 4 0.11
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (25 bp):
TTTAATTATAAAAACTTATATAAAC
Found at i:7534785 original size:13 final size:13
Alignment explanation
Indices: 7534754--7534786 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7534744 AATAAATATA
7534754 TTATAA-AATTTT
1 TTATAATAATTTT
7534766 TTA-AATAATTTT
1 TTATAATAATTTT
7534778 TTATAATAA
1 TTATAATAA
7534787 ACTTTTTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 12 0.63
13 5 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TTATAATAATTTT
Found at i:7537259 original size:3 final size:3
Alignment explanation
Indices: 7537253--7537280 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7537243 AAGCATGTTG
7537253 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7537281 AATTTTATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7542906 original size:38 final size:38
Alignment explanation
Indices: 7542855--7542930 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
7542845 TGGAGACAGG
7542855 GTGGCGCTACCATTTAGTTATAGCTAGTCATGGGCTTC
1 GTGGCGCTACCATTTAGTTATAGCTAGTCATGGGCTTC
7542893 GTGGCGCTACCATTTAGTTATAGCTAGTCATGGGCTTC
1 GTGGCGCTACCATTTAGTTATAGCTAGTCATGGGCTTC
7542931 TTACTTATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.34
Consensus pattern (38 bp):
GTGGCGCTACCATTTAGTTATAGCTAGTCATGGGCTTC
Found at i:7543363 original size:22 final size:22
Alignment explanation
Indices: 7543338--7543382 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7543328 TTTAATAAAA
7543338 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
7543360 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
7543382 A
1 A
7543383 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:7554826 original size:3 final size:3
Alignment explanation
Indices: 7554818--7554848 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7554808 GCCCTAGTAT
7554818 TTC TTC TTC TTC TTC TTC TTC TTC TT- TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
7554849 TTACTTGTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:7555299 original size:3 final size:3
Alignment explanation
Indices: 7555291--7555318 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7555281 TTGCAAAAGT
7555291 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7555319 TTTCAGCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7559297 original size:52 final size:48
Alignment explanation
Indices: 7559220--7559406 Score: 182
Period size: 47 Copynumber: 3.9 Consensus size: 48
7559210 CATGGCAGCA
* * * * * *
7559220 TGTGAAATGTGATTTCGTATAAGACCATAGCTGGGCTACGGCTTCGGAG
1 TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATC-GAG
* *
7559269 AAATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCG-G
1 ---TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGAG
* * *
7559319 TGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATC-AG
1 TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGAG
* * * *
7559366 TGTGATATGTG-ATCCGTGTAAGACCATGGCTGGGCTATGGC
1 TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGC
7559407 CCGGTATGTG
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
46 23 0.20
47 54 0.47
50 1 0.01
51 1 0.01
52 37 0.32
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (48 bp):
TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGAG
Found at i:7565543 original size:23 final size:24
Alignment explanation
Indices: 7565488--7565545 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
7565478 AATTAAAATA
* *
7565488 AATTATTAATTGTTATATTTTTTTT
1 AATTATT-ATTGTTATATTTTCTTG
* *
7565513 AATGATTATT-TTTTATTTTCTTG
1 AATTATTATTGTTATATTTTCTTG
7565536 AATTATTATT
1 AATTATTATT
7565546 ATGATTTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
23 19 0.68
24 3 0.11
25 6 0.21
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.66
Consensus pattern (24 bp):
AATTATTATTGTTATATTTTCTTG
Found at i:7575441 original size:10 final size:10
Alignment explanation
Indices: 7575426--7575451 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7575416 AGGGTATGAT
7575426 GGAATAGCGA
1 GGAATAGCGA
7575436 GGAATAGCGA
1 GGAATAGCGA
7575446 GGAATA
1 GGAATA
7575452 ACCGGAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.38, T:0.12
Consensus pattern (10 bp):
GGAATAGCGA
Found at i:7580413 original size:14 final size:14
Alignment explanation
Indices: 7580394--7580421 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7580384 GAAATAAAAT
7580394 TTAATTTATTCAGA
1 TTAATTTATTCAGA
7580408 TTAATTTATTCAGA
1 TTAATTTATTCAGA
7580422 ACAAACTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
TTAATTTATTCAGA
Found at i:7585185 original size:22 final size:22
Alignment explanation
Indices: 7585160--7585207 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
7585150 ATATTGTAGC
7585160 AAAATAGTGAG-AAAATAATAAA
1 AAAATAGT-AGTAAAATAATAAA
*
7585182 AAAATAGTAGTAAAATAGTAAA
1 AAAATAGTAGTAAAATAATAAA
7585204 AAAA
1 AAAA
7585208 ATAAGAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (22 bp):
AAAATAGTAGTAAAATAATAAA
Found at i:7585197 original size:33 final size:32
Alignment explanation
Indices: 7585155--7585217 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
7585145 TATTGATATT
*
7585155 GTAGCAAAATAGTGAGAAAATAATAA-AAAAATA
1 GTAGCAAAATAGT-A-AAAAAAATAAGAAAAATA
*
7585188 GTAGTAAAATAGTAAAAAAAATAAGAAAAA
1 GTAGCAAAATAGTAAAAAAAATAAGAAAAA
7585218 ACAAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 9 0.33
32 6 0.22
33 12 0.44
ACGTcount: A:0.67, C:0.02, G:0.14, T:0.17
Consensus pattern (32 bp):
GTAGCAAAATAGTAAAAAAAATAAGAAAAATA
Found at i:7585207 original size:11 final size:11
Alignment explanation
Indices: 7585160--7585207 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
7585150 ATATTGTAGC
* *
7585160 AAAATAGTGAG
1 AAAATAGTAAA
*
7585171 AAAATAATAAA
1 AAAATAGTAAA
**
7585182 AAAATAGTAGT
1 AAAATAGTAAA
7585193 AAAATAGTAAA
1 AAAATAGTAAA
7585204 AAAA
1 AAAA
7585208 ATAAGAAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (11 bp):
AAAATAGTAAA
Found at i:7594148 original size:21 final size:20
Alignment explanation
Indices: 7594033--7594151 Score: 63
Period size: 21 Copynumber: 6.0 Consensus size: 20
7594023 TTATATTTTC
* *
7594033 TATTA-AAAATTAATATAAA
1 TATTATAAAATTTATAAAAA
*
7594052 T-TTATAAAAAATTCATAAAAA
1 TATTAT--AAAATTTATAAAAA
* *
7594073 CA-TAT-AAATATTATACAAA
1 TATTATAAAAT-TTATAAAAA
* *
7594092 TACTA-ATAAA-TTATTAAAA
1 TATTATA-AAATTTATAAAAA
*
7594111 TATTATAAAATTAATAAAACA
1 TATTATAAAATTTATAAAA-A
7594132 TATT-TAAAATTTTATAAAAA
1 TATTATAAAA-TTTATAAAAA
7594152 CTCACCAAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 23
0.68 0.11 0.21
Matches are distributed among these distances:
18 7 0.09
19 23 0.30
20 15 0.20
21 31 0.41
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (20 bp):
TATTATAAAATTTATAAAAA
Found at i:7594688 original size:3 final size:3
Alignment explanation
Indices: 7594673--7594704 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7594663 AAAAATTCAA
*
7594673 AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7594705 AATCCGATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:7594966 original size:10 final size:10
Alignment explanation
Indices: 7594944--7595067 Score: 51
Period size: 10 Copynumber: 12.5 Consensus size: 10
7594934 TTTTTATATA
*
7594944 TTTTA-AATA
1 TTTTAGAATT
7594953 TTTTAGAATT
1 TTTTAGAATT
* *
7594963 TTTTATAAGT
1 TTTTAGAATT
*
7594973 TTTAATGAATT
1 TTTTA-GAATT
*
7594984 TTTTATAA-T
1 TTTTAGAATT
* *
7594993 TTTTATAAGT
1 TTTTAGAATT
* *
7595003 TTATAGGAA-G
1 TTTTA-GAATT
7595013 TTTTA-AATTT
1 TTTTAGAA-TT
*
7595023 TTTTAGTATGT
1 TTTTAGAAT-T
* *
7595034 TTTTTGGA-T
1 TTTTAGAATT
*
7595043 TTTTATAATT
1 TTTTAGAATT
*
7595053 TATTAGAATT
1 TTTTAGAATT
7595063 TTTTA
1 TTTTA
7595068 TATTTATAGT
Statistics
Matches: 84, Mismatches: 22, Indels: 17
0.68 0.18 0.14
Matches are distributed among these distances:
8 2 0.02
9 20 0.24
10 45 0.54
11 17 0.20
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (10 bp):
TTTTAGAATT
Found at i:7594984 original size:21 final size:21
Alignment explanation
Indices: 7594958--7594997 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7594948 AAATATTTTA
7594958 GAATTTTTTATAAGTTTTAAT
1 GAATTTTTTATAAGTTTTAAT
*
7594979 GAATTTTTTATAATTTTTA
1 GAATTTTTTATAAGTTTTA
7594998 TAAGTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
GAATTTTTTATAAGTTTTAAT
Found at i:7595053 original size:9 final size:9
Alignment explanation
Indices: 7595041--7595153 Score: 72
Period size: 9 Copynumber: 12.1 Consensus size: 9
7595031 TGTTTTTTGG
7595041 ATTTTTATA
1 ATTTTTATA
*
7595050 ATTTATTAGA
1 ATTT-TTATA
7595060 ATTTTT-TA
1 ATTTTTATA
*
7595068 TATTTATAGTA
1 -ATTTTTA-TA
*
7595079 AGATTTTATGA
1 A-TTTTTAT-A
*
7595090 TTTTTTTATA
1 -ATTTTTATA
7595100 ATTTTTA-A
1 ATTTTTATA
7595108 AGTTTTTATA
1 A-TTTTTATA
7595118 TATTTTTA-A
1 -ATTTTTATA
*
7595127 ATTTTAAT-
1 ATTTTTATA
*
7595135 ATTTTTATG
1 ATTTTTATA
7595144 ATTTTTATA
1 ATTTTTATA
7595153 A
1 A
7595154 GAAAATATAA
Statistics
Matches: 81, Mismatches: 11, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
8 16 0.20
9 33 0.41
10 18 0.22
11 14 0.17
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (9 bp):
ATTTTTATA
Found at i:7595085 original size:20 final size:21
Alignment explanation
Indices: 7595040--7595085 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
7595030 ATGTTTTTTG
7595040 GATTTTTATAATTTATTAGAA
1 GATTTTTATAATTTATTAGAA
*
7595061 -TTTTTTAT-ATTTA-TAGTAA
1 GATTTTTATAATTTATTAG-AA
7595080 GATTTT
1 GATTTT
7595086 ATGATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
18 3 0.14
19 7 0.33
20 11 0.52
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (21 bp):
GATTTTTATAATTTATTAGAA
Found at i:7595113 original size:19 final size:19
Alignment explanation
Indices: 7595091--7595131 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7595081 ATTTTATGAT
7595091 TTTTTTATA-ATTTTTAAA
1 TTTTTTATATATTTTTAAA
*
7595109 GTTTTTATATATTTTTAAA
1 TTTTTTATATATTTTTAAA
7595128 TTTT
1 TTTT
7595132 AATATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTTATATATTTTTAAA
Found at i:7607048 original size:31 final size:31
Alignment explanation
Indices: 7607013--7607221 Score: 253
Period size: 31 Copynumber: 6.7 Consensus size: 31
7607003 CTTGTCACTT
*
7607013 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**** *
7607044 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**
7607075 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
*
7607106 GTAGCCGAAA-CTACCACTTTTCACTGATTAG
1 GTAGCC-AAAGCTACCACTTTTCACTGATCAG
7607137 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCA-AAGCTACCACTTTTCACTGATCAG
**
7607168 GTAGTTGAAA-CTACCACTTTTCACTGATCAG
1 GTAG-CCAAAGCTACCACTTTTCACTGATCAG
**
7607199 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCAAAGCTACCACTTTTCA
7607222 GTTGTCATTT
Statistics
Matches: 155, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
29 1 0.01
30 5 0.03
31 145 0.94
32 3 0.02
33 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAG
Found at i:7607110 original size:62 final size:62
Alignment explanation
Indices: 7607020--7607221 Score: 305
Period size: 62 Copynumber: 3.3 Consensus size: 62
7607010 CTTGTAGCCA
* *** * *
7607020 AAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCAG
* * *
7607082 GAGCTACCACTTTTCACTGATCAGGTAGCCGAAACTACCACTTTTCACTGATTAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCAG
* *
7607144 AAGCTACCACTTTTCACTGATCAGGTAGTTGAAACTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCAG
7607206 AAGCTACCACTTTTCA
1 AAGCTACCACTTTTCA
7607222 GTTGTCATTT
Statistics
Matches: 126, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 126 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (62 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCAG
Found at i:7607182 original size:93 final size:93
Alignment explanation
Indices: 7607013--7607221 Score: 294
Period size: 93 Copynumber: 2.2 Consensus size: 93
7607003 CTTGTCACTT
* * ** *
7607013 GTAGCC-AAAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGT
1 GTAGCCGAAA-CTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGT
* *
7607077 AGCCGGAGCTACCACTTTTCACTGATCAG
65 AGCCGAAACTACCACTTTTCACTGATCAG
*
7607106 GTAGCCGAAACTACCACTTTTCACTGATTAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
1 GTAGCCGAAACTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
**
7607171 GTTGAAACTACCACTTTTCACTGATCAG
66 GCCGAAACTACCACTTTTCACTGATCAG
* *
7607199 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAACTACCACTTTTCA
7607222 GTTGTCATTT
Statistics
Matches: 103, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 100 0.97
94 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (93 bp):
GTAGCCGAAACTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
GCCGAAACTACCACTTTTCACTGATCAG
Found at i:7607305 original size:50 final size:50
Alignment explanation
Indices: 7607199--7607375 Score: 239
Period size: 50 Copynumber: 3.5 Consensus size: 50
7607189 CACTGATCAG
* * * * *
7607199 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAAT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* *
7607250 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
7607300 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
7607350 GTAGTCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
7607376 GTTTCCATGG
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
50 87 0.78
51 24 0.22
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:7612898 original size:21 final size:21
Alignment explanation
Indices: 7612859--7612898 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7612849 TTTATTTCAA
*
7612859 AATATAAATGATATAGAATAT
1 AATATAAATGAAATAGAATAT
*
7612880 AATATAAATGAAATGGAAT
1 AATATAAATGAAATAGAAT
7612899 TACTGATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
AATATAAATGAAATAGAATAT
Found at i:7612939 original size:21 final size:21
Alignment explanation
Indices: 7612906--7612946 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7612896 AATTACTGAT
* *
7612906 AAAAGTTCTATATCTCTATAG
1 AAAAGTTCGATATATCTATAG
*
7612927 AAAAGTTGGATATATCTATA
1 AAAAGTTCGATATATCTATA
7612947 TAATCAATCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (21 bp):
AAAAGTTCGATATATCTATAG
Found at i:7613039 original size:14 final size:14
Alignment explanation
Indices: 7613020--7613048 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7613010 TAGATAAATA
7613020 ATAATCTATATAAC
1 ATAATCTATATAAC
7613034 ATAATCTATATAAC
1 ATAATCTATATAAC
7613048 A
1 A
7613049 AAGTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:7614730 original size:2 final size:2
Alignment explanation
Indices: 7614723--7614758 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7614713 TTTGCACTTC
7614723 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7614759 TTTTAAGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7616542 original size:15 final size:15
Alignment explanation
Indices: 7616524--7616554 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7616514 ATTCTAAATT
7616524 ATTAAATTAATAATA
1 ATTAAATTAATAATA
7616539 ATTAAATTAATAATA
1 ATTAAATTAATAATA
7616554 A
1 A
7616555 ATTCTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
ATTAAATTAATAATA
Found at i:7616590 original size:11 final size:11
Alignment explanation
Indices: 7616574--7616601 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7616564 ATTCTAAATA
7616574 TAAATAATAAC
1 TAAATAATAAC
7616585 TAAATAATAAC
1 TAAATAATAAC
7616596 TAAATA
1 TAAATA
7616602 GAAATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAATAATAAC
Found at i:7616593 original size:3 final size:3
Alignment explanation
Indices: 7616576--7616709 Score: 73
Period size: 3 Copynumber: 42.3 Consensus size: 3
7616566 TCTAAATATA
*
7616576 AAT AAT AACT AAAT AAT AACT AAAT AGA- AAT AAA AAT -AT ATAT AAT
1 AAT AAT AA-T -AAT AAT AA-T -AAT A-AT AAT AAT AAT AAT A-AT AAT
* *
7616622 AAT AAT ATAT AAA AAT AAT ATT AAT ATAT AAAT AGAT AAT -AT AAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT A-AT -AAT A-AT AAT AAT AAT AAT
*
7616670 AGAT AAT -AT AAT AAT AGAT -AG AAT AAT AA- AAT AAAT AAT A
1 A-AT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT -AAT AAT A
7616710 TAGAAATATA
Statistics
Matches: 104, Mismatches: 8, Indels: 38
0.69 0.05 0.25
Matches are distributed among these distances:
2 10 0.10
3 63 0.61
4 26 0.25
5 5 0.05
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7616721 original size:30 final size:31
Alignment explanation
Indices: 7616598--7616721 Score: 89
Period size: 32 Copynumber: 3.9 Consensus size: 31
7616588 ATAATAACTA
*
7616598 AATAGAAATAAA-AATATATATAATA-ATAAT
1 AATA-AAATAAATAATATATATAATATAGAAT
* *
7616628 ATATAAAAATAATATTAATATATA-AATAGATAAT
1 A-AT-AAAATAA-A-TAATATATATAATATAGAAT
*
7616662 -ATAATAATAGATAATATA-ATAATAGATAGAAT
1 AATAA-AATAAATAATATATATAAT--ATAGAAT
*
7616694 AATAAAATAAATAATATAGA-AATATAGA
1 AATAAAATAAATAATATATATAATATAGA
7616722 TTTATAAATC
Statistics
Matches: 78, Mismatches: 4, Indels: 24
0.74 0.04 0.23
Matches are distributed among these distances:
29 1 0.01
30 16 0.21
31 11 0.14
32 28 0.36
33 9 0.12
34 13 0.17
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (31 bp):
AATAAAATAAATAATATATATAATATAGAAT
Found at i:7619731 original size:15 final size:15
Alignment explanation
Indices: 7619711--7619741 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7619701 CTGTATCAGT
7619711 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
7619726 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
7619741 A
1 A
7619742 CGGAACCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13
Consensus pattern (15 bp):
AATGAATCAGAGCAC
Found at i:7623738 original size:12 final size:11
Alignment explanation
Indices: 7623721--7623769 Score: 64
Period size: 12 Copynumber: 4.4 Consensus size: 11
7623711 AATGTATACA
*
7623721 AAAAATAGAAAT
1 AAAAATA-ATAT
7623733 AAAAATATATAT
1 AAAAATA-ATAT
7623745 AAAAATAATAT
1 AAAAATAATAT
7623756 AAAAAT-ATAT
1 AAAAATAATAT
7623766 AAAA
1 AAAA
7623770 TATTTAGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
10 8 0.23
11 10 0.29
12 17 0.49
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (11 bp):
AAAAATAATAT
Found at i:7623748 original size:11 final size:11
Alignment explanation
Indices: 7623734--7623813 Score: 74
Period size: 11 Copynumber: 7.3 Consensus size: 11
7623724 AATAGAAATA
7623734 AAAATATATAT
1 AAAATATATAT
7623745 AAAA-ATAATAT
1 AAAATAT-ATAT
7623756 AAAA-ATATAT
1 AAAATATATAT
* *
7623766 AAAATATTTAG
1 AAAATATATAT
*
7623777 AATATATATAAT
1 AAAATATAT-AT
*
7623789 AAAATAGATAT
1 AAAATATATAT
* *
7623800 AATATATAAAT
1 AAAATATATAT
7623811 AAA
1 AAA
7623814 TTGAATATAA
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
10 10 0.18
11 37 0.67
12 8 0.15
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
AAAATATATAT
Found at i:7623763 original size:21 final size:21
Alignment explanation
Indices: 7623730--7623809 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
7623720 AAAAAATAGA
7623730 AATAAAAATATATATAAAAAT
1 AATAAAAATATATATAAAAAT
7623751 AATATAAAA-ATATAT-AAAAT
1 AATA-AAAATATATATAAAAAT
* * * *
7623771 ATTTAGAATATATATAATAA-
1 AATAAAAATATATATAAAAAT
* *
7623791 AATAGATATAATATATAAA
1 AATAAAAAT-ATATATAAA
7623810 TAAATTGAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
19 3 0.07
20 17 0.38
21 21 0.47
22 4 0.09
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
AATAAAAATATATATAAAAAT
Found at i:7623771 original size:9 final size:9
Alignment explanation
Indices: 7623739--7623809 Score: 51
Period size: 9 Copynumber: 8.0 Consensus size: 9
7623729 AAATAAAAAT
7623739 ATATATAAAA
1 ATATAT-AAA
7623749 ATAATATAAAA
1 AT-ATAT-AAA
7623760 ATATATAAA
1 ATATATAAA
* *
7623769 ATATTTAGA
1 ATATATAAA
7623778 ATATAT---
1 ATATATAAA
7623784 ATA-ATAAA
1 ATATATAAA
* *
7623792 ATAGATATA
1 ATATATAAA
7623801 ATATATAAA
1 ATATATAAA
7623810 TAAATTGAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
5 2 0.04
6 3 0.06
8 3 0.06
9 26 0.52
10 6 0.12
11 10 0.20
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (9 bp):
ATATATAAA
Found at i:7623814 original size:21 final size:22
Alignment explanation
Indices: 7623777--7623840 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
7623767 AAATATTTAG
7623777 AATATATATAATAAAATAG-ATAT
1 AATATATA-AAT-AAATAGAATAT
*
7623800 AATATATAAATAAATTGAATAT
1 AATATATAAATAAATAGAATAT
*
7623822 AATAT-TAAATATATA-AATA
1 AATATATAAATAAATAGAATA
7623841 AATTAAACCA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
20 4 0.11
21 13 0.35
22 12 0.32
23 8 0.22
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (22 bp):
AATATATAAATAAATAGAATAT
Found at i:7623821 original size:22 final size:22
Alignment explanation
Indices: 7623707--7623832 Score: 82
Period size: 23 Copynumber: 5.7 Consensus size: 22
7623697 TTTGTATTGT
*
7623707 ATATAATGTATACAA-AAAATAG
1 ATATAATATATA-AATAAAATAG
* * *
7623729 AAATAAAAATATATATAAAAATA-
1 ATAT-AATATATAAAT-AAAATAG
* * *
7623752 ATATAA-AAATATATAAAATAT
1 ATATAATATATAAATAAAATAG
* *
7623773 TTAGAATATATATAATAAAATAG
1 ATATAATATATA-AATAAAATAG
*
7623796 ATATAATATATAAAT-AAATTG
1 ATATAATATATAAATAAAATAG
7623817 AATATAATAT-TAAATA
1 -ATATAATATATAAATA
7623833 TATAAATAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 16
0.73 0.12 0.14
Matches are distributed among these distances:
20 6 0.07
21 21 0.26
22 22 0.27
23 27 0.33
24 6 0.07
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.33
Consensus pattern (22 bp):
ATATAATATATAAATAAAATAG
Found at i:7624247 original size:13 final size:13
Alignment explanation
Indices: 7624231--7624258 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7624221 GATATTCATA
7624231 ATTAATATGAATT
1 ATTAATATGAATT
7624244 ATTAATATGAATT
1 ATTAATATGAATT
7624257 AT
1 AT
7624259 AGACTCGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:7624325 original size:8 final size:8
Alignment explanation
Indices: 7624312--7624338 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
7624302 GCCATACTTA
7624312 ATATAAAT
1 ATATAAAT
7624320 ATATAAAT
1 ATATAAAT
7624328 ATATAAAT
1 ATATAAAT
7624336 ATA
1 ATA
7624339 ACATATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATATAAAT
Found at i:7624339 original size:22 final size:22
Alignment explanation
Indices: 7624311--7624352 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7624301 TGCCATACTT
7624311 AATATAA-ATATATAAATATATA
1 AATATAACATAT-TAAATATATA
*
7624333 AATATAACATATTTAATATA
1 AATATAACATATTAAATATA
7624353 ATAATGGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
AATATAACATATTAAATATATA
Found at i:7624508 original size:29 final size:29
Alignment explanation
Indices: 7624430--7624496 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
7624420 TTAAATTAAA
* * * * *
7624430 ATTTTATATATATATATTTATTAATATAT
1 ATTTAATATTTATCTATATATTTATATAT
*
7624459 ATTTATTATTTATCTATATATTTATATAT
1 ATTTAATATTTATCTATATATTTATATAT
7624488 ATTTAATAT
1 ATTTAATAT
7624497 CTTTTTTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (29 bp):
ATTTAATATTTATCTATATATTTATATAT
Found at i:7624588 original size:17 final size:17
Alignment explanation
Indices: 7624566--7624604 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7624556 CTGACTCCAT
*
7624566 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
7624583 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
7624600 TTTTA
1 TTTTA
7624605 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:7624764 original size:15 final size:17
Alignment explanation
Indices: 7624734--7624765 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
7624724 GTCAAAATCT
7624734 TTTTATGCATTTATATA
1 TTTTATGCATTTATATA
7624751 TTTTATG-A-TTATATA
1 TTTTATGCATTTATATA
7624766 AATGAAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.59
Consensus pattern (17 bp):
TTTTATGCATTTATATA
Found at i:7624893 original size:27 final size:28
Alignment explanation
Indices: 7624863--7624919 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
7624853 AAATGAATGG
*
7624863 AATAATTAGTTCTAGTTATTA-AATATA
1 AATAATTAGTTCTAGCTATTATAATATA
*
7624890 AATAATTAGTTCTAGCTATTATACTATA
1 AATAATTAGTTCTAGCTATTATAATATA
7624918 AA
1 AA
7624920 AAATAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (28 bp):
AATAATTAGTTCTAGCTATTATAATATA
Found at i:7624927 original size:31 final size:27
Alignment explanation
Indices: 7624863--7624928 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 27
7624853 AAATGAATGG
* *
7624863 AATAATTAGTTCTAGTTATTAAATATA
1 AATAATTAGTTCTAGCTATTAAATAAA
7624890 AATAATTAGTTCTAGCTATTATACTATAAAA
1 AATAATTAGTTCTAGCTATTA-A--AT-AAA
7624921 AATAATTA
1 AATAATTA
7624929 ATTTCATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 20 0.61
28 1 0.03
30 2 0.06
31 10 0.30
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (27 bp):
AATAATTAGTTCTAGCTATTAAATAAA
Found at i:7629951 original size:42 final size:42
Alignment explanation
Indices: 7629895--7629982 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
7629885 TTTATTAAAC
7629895 AATAATAAATTAATGTTTATTTAATGGTTTACTTAATATAAT
1 AATAATAAATTAATGTTTATTTAATGGTTTACTTAATATAAT
7629937 AATAATAAATTAATGTTTATTTAATGGTTTACTTAATATAAT
1 AATAATAAATTAATGTTTATTTAATGGTTTACTTAATATAAT
7629979 AATA
1 AATA
7629983 TATATAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (42 bp):
AATAATAAATTAATGTTTATTTAATGGTTTACTTAATATAAT
Found at i:7630330 original size:55 final size:55
Alignment explanation
Indices: 7630223--7630330 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
7630213 TAGTCTTAAT
* * **
7630223 TGTTGGAATACTACTTCTTTTAAATATATTTTTTATATGTTTAAATTGATTGTGA
1 TGTTGGAATACTACTTCTTTTAAATATATTATTTATATATTTAAATCAATTGTGA
* *
7630278 TGTTGGAATATTACCTT-TTTTGAAT-TAATTATTTATATATTTAAATCAATTGT
1 TGTTGGAATACTA-CTTCTTTTAAATAT-ATTATTTATATATTTAAATCAATTGT
7630331 TACATAGCAG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 1 0.02
55 41 0.91
56 3 0.07
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.53
Consensus pattern (55 bp):
TGTTGGAATACTACTTCTTTTAAATATATTATTTATATATTTAAATCAATTGTGA
Found at i:7631212 original size:33 final size:33
Alignment explanation
Indices: 7631170--7631236 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
7631160 AAACCTTGAG
7631170 AAAGGAACTTGAAAATAAGTCTCAAGAGATACA
1 AAAGGAACTTGAAAATAAGTCTCAAGAGATACA
7631203 AAAGGAACTTGAAAATAAGTCTCAAGAGATACA
1 AAAGGAACTTGAAAATAAGTCTCAAGAGATACA
7631236 A
1 A
7631237 GACACCGAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (33 bp):
AAAGGAACTTGAAAATAAGTCTCAAGAGATACA
Found at i:7637753 original size:48 final size:48
Alignment explanation
Indices: 7637662--7637753 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
7637652 TTAGAGTGTT
** * * *
7637662 GATTTGGCTTCGGGCCATGATATCGGTACTTCGGGTGTGAGTTATAAC
1 GATTTGGCTTCAAGCCATGATATCAGTACTTCGGGTATAAGTTATAAC
7637710 GATTTGGCTTCAAGCCATGATATCAGTACTTCGGAG-ATAAGTTA
1 GATTTGGCTTCAAGCCATGATATCAGTACTTCGG-GTATAAGTTA
7637754 CCTTGTTTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
48 37 0.97
49 1 0.03
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (48 bp):
GATTTGGCTTCAAGCCATGATATCAGTACTTCGGGTATAAGTTATAAC
Found at i:7638570 original size:12 final size:12
Alignment explanation
Indices: 7638550--7638578 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
7638540 GAGTGGAACG
7638550 AAATTTTTTTTT
1 AAATTTTTTTTT
7638562 -AATTTTTTTTT
1 AAATTTTTTTTT
7638573 AAATTT
1 AAATTT
7638579 CGGCAGCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
AAATTTTTTTTT
Found at i:7639212 original size:22 final size:22
Alignment explanation
Indices: 7639183--7639250 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
7639173 TGCACAAACG
7639183 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
* *
7639205 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTA-AAGTGCTA
*
7639227 AACAGAGAGCACTTAACGTGCTA
1 AACAGAGAGCAC-TAAAGTGCTA
7639250 A
1 A
7639251 TAATAGAACG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 29 0.74
23 8 0.21
24 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:7640432 original size:7 final size:7
Alignment explanation
Indices: 7640422--7640510 Score: 64
Period size: 7 Copynumber: 13.3 Consensus size: 7
7640412 TACTTATGTT
7640422 TTATATA
1 TTATATA
7640429 -T-TATA
1 TTATATA
7640434 TTATATA
1 TTATATA
*
7640441 TAATATA
1 TTATATA
*
7640448 ATA-ATA
1 TTATATA
*
7640454 TGATATA
1 TTATATA
7640461 TTATATA
1 TTATATA
7640468 TTA-ATA
1 TTATATA
*
7640474 CTTAAATA
1 -TTATATA
7640482 TTA-A-A
1 TTATATA
7640487 TTAATATA
1 TT-ATATA
*
7640495 ATATATA
1 TTATATA
*
7640502 ATATATA
1 TTATATA
7640509 TT
1 TT
7640511 TTTATATTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 7 0.11
6 11 0.17
7 43 0.65
8 5 0.08
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (7 bp):
TTATATA
Found at i:7640459 original size:20 final size:20
Alignment explanation
Indices: 7640431--7640473 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7640421 TTTATATATT
*
7640431 ATATTATATATAATATAATA
1 ATATGATATATAATATAATA
* *
7640451 ATATGATATATTATATATTA
1 ATATGATATATAATATAATA
7640471 ATA
1 ATA
7640474 CTTAAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
ATATGATATATAATATAATA
Found at i:7641952 original size:46 final size:46
Alignment explanation
Indices: 7641890--7642070 Score: 177
Period size: 46 Copynumber: 3.8 Consensus size: 46
7641880 TATTTGGGCA
*
7641890 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * * *
7641936 TTCGAACTCGTTGAGTTGAGT-TGAGTCCGAGTTCGTGAGATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTT-ATG-GATGCGAA-T--G
*
7641986 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
7642034 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7642071 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 18, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
45 5 0.05
46 56 0.52
47 4 0.04
48 6 0.06
50 5 0.05
51 4 0.04
52 22 0.21
53 5 0.05
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7643717 original size:19 final size:19
Alignment explanation
Indices: 7643693--7643742 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
7643683 CGGGTTTGGG
7643693 ACACGGGCGTGTCCCTAGC
1 ACACGGGCGTGTCCCTAGC
**
7643712 ACACGGAAGTGTCCCTAGC
1 ACACGGGCGTGTCCCTAGC
7643731 ACACGGGCGTGT
1 ACACGGGCGTGT
7643743 GCTCTATACC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.16
Consensus pattern (19 bp):
ACACGGGCGTGTCCCTAGC
Found at i:7646453 original size:38 final size:38
Alignment explanation
Indices: 7646410--7646704 Score: 212
Period size: 38 Copynumber: 7.0 Consensus size: 38
7646400 TTTCAAATTA
*
7646410 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
*
7646448 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* * *
7646489 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACTACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* *
7646533 ACATGTATCAATATGTGTAATCGTGGTATATCTACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
* *
7646581 ACACGTATAACCGTGGTATATCCACTTAGCACCACATT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
** *
7646619 ACATGTATCAATATGTGTAATTGTGGTATAACCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
*
7646667 ACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
7646705 TTTCCATTCC
Statistics
Matches: 206, Mismatches: 24, Indels: 54
0.73 0.08 0.19
Matches are distributed among these distances:
38 94 0.46
39 1 0.00
40 2 0.01
41 2 0.01
42 5 0.02
43 1 0.00
44 4 0.02
45 3 0.01
46 3 0.01
47 27 0.13
48 64 0.31
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:7646564 original size:48 final size:48
Alignment explanation
Indices: 7646450--7646674 Score: 256
Period size: 48 Copynumber: 4.9 Consensus size: 48
7646440 ACCACGTTAC
* *
7646450 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
7646497 ATATGTAACCGTGGCATATCCACTTAGCACTACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
7646545 ATGTGTAATCGTGGTATATCTACTTAGCACCACGTTAC----A-C---
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
7646585 --GTATAACCGTGGTATATCCACTTAGCACCACATTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
** * *
7646631 ATGTGTAATTGTGGTATAACCACTTAGCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
7646675 AACCGTGGTA
Statistics
Matches: 147, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
38 32 0.22
42 1 0.01
43 2 0.01
44 1 0.01
47 33 0.22
48 78 0.53
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:7646611 original size:86 final size:86
Alignment explanation
Indices: 7646502--7646704 Score: 352
Period size: 86 Copynumber: 2.4 Consensus size: 86
7646492 TCAATATATG
* * * *
7646502 TAACCGTGGCATATCCACTTAGCACTACGTTACATGTATCAATATGTGTAATCGTGGTATATCTA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATAACCA
7646567 CTTAGCACCACGTTACACGTA
66 CTTAGCACCACGTTACACGTA
* *
7646588 TAACCGTGGTATATCCACTTAGCACCACATTACATGTATCAATATGTGTAATTGTGGTATAACCA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATAACCA
7646653 CTTAGCACCACGTTACACGTA
66 CTTAGCACCACGTTACACGTA
7646674 TAACCGTGGTATATCCACTTAGCACCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
7646705 TTTCCATTCC
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 110 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (86 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATAACCA
CTTAGCACCACGTTACACGTA
Found at i:7649842 original size:19 final size:20
Alignment explanation
Indices: 7649796--7649842 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
7649786 ATCGAGTGAT
*
7649796 TAATTAGGCTTTAATTAAGTG
1 TAATTA-GCTTTAATTAAGAG
7649817 -AATTTAGC-TTAATTAAGAG
1 TAA-TTAGCTTTAATTAAGAG
7649836 TAATTAG
1 TAATTAG
7649843 GAAAAAAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 14 0.61
20 6 0.26
21 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.40
Consensus pattern (20 bp):
TAATTAGCTTTAATTAAGAG
Found at i:7651354 original size:24 final size:22
Alignment explanation
Indices: 7651327--7651370 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
7651317 TAAATTGATA
7651327 TGAATATGTGATTATTGTGAAATT
1 TGAATATGTG-TTATT-TGAAATT
*
7651351 TGAATATTTGTTATTTGAAA
1 TGAATATGTGTTATTTGAAA
7651371 AGTAAATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 5 0.26
24 9 0.47
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (22 bp):
TGAATATGTGTTATTTGAAATT
Found at i:7651653 original size:51 final size:53
Alignment explanation
Indices: 7651560--7651686 Score: 170
Period size: 51 Copynumber: 2.4 Consensus size: 53
7651550 ATAAGTGTCG
**
7651560 CCTTACTGTTACTGTTACTGTTCCGGATTCGTTCCATAGAGGTACT-T-TGTA
1 CCTTACTGTTACTGTTACTGTTCCAAATTCGTTCCATAGAGGTACTCTGTGTA
* *
7651611 CCTTACTGTTACTGTTACTGTTCCAAATTTGTTTCGAT-GAGGTACTCTGTGTA
1 CCTTACTGTTACTGTTACTGTTCCAAATTCG-TTCCATAGAGGTACTCTGTGTA
*
7651664 CCGCTACTGTTACTGTTACTGTT
1 CC-TTACTGTTACTGTTACTGTT
7651687 ACCGTTACGG
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
51 36 0.54
52 6 0.09
53 6 0.09
54 19 0.28
ACGTcount: A:0.17, C:0.21, G:0.19, T:0.43
Consensus pattern (53 bp):
CCTTACTGTTACTGTTACTGTTCCAAATTCGTTCCATAGAGGTACTCTGTGTA
Found at i:7652347 original size:20 final size:20
Alignment explanation
Indices: 7652322--7652366 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7652312 CTTTCTTTAC
*
7652322 AATTTAGTCTTTCCACCAAA
1 AATTTAGTATTTCCACCAAA
* * *
7652342 AATTTATTATTTTCACCTAA
1 AATTTAGTATTTCCACCAAA
7652362 AATTT
1 AATTT
7652367 GAAAGAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.18, G:0.02, T:0.44
Consensus pattern (20 bp):
AATTTAGTATTTCCACCAAA
Found at i:7654115 original size:46 final size:46
Alignment explanation
Indices: 7654063--7654381 Score: 388
Period size: 46 Copynumber: 6.9 Consensus size: 46
7654053 AGTGTACTCT
* * *
7654063 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACTATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
7654109 CTGATATGAAATGTGCAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
7654155 CGGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
7654201 GTGATATGGAATGAATAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * *
7654247 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
7654293 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
7654339 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGC
7654382 GTCATGTCAG
Statistics
Matches: 243, Mismatches: 29, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
45 1 0.00
46 242 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:7654689 original size:16 final size:17
Alignment explanation
Indices: 7654668--7654700 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7654658 ATGATGGAGC
7654668 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
7654684 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
7654701 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:7655330 original size:18 final size:18
Alignment explanation
Indices: 7655307--7655364 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
7655297 TAAATAAAGG
* *
7655307 TACTGAATAATTAACTGC
1 TACTGAATAACTGACTGC
*
7655325 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGC
*
7655343 TACTGGATAACTGACTGC
1 TACTGAATAACTGACTGC
7655361 TACT
1 TACT
7655365 ATAAAAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (18 bp):
TACTGAATAACTGACTGC
Found at i:7655404 original size:18 final size:18
Alignment explanation
Indices: 7655377--7655423 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
7655367 AAAAAAATTC
* *
7655377 TTACTTAATAATTTATTA
1 TTACTGAATAATTTATCA
*
7655395 TTACTGAATAATTTATCG
1 TTACTGAATAATTTATCA
7655413 TTACTGAATAA
1 TTACTGAATAA
7655424 CTGACTGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (18 bp):
TTACTGAATAATTTATCA
Found at i:7657410 original size:21 final size:21
Alignment explanation
Indices: 7657386--7657442 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
7657376 AGTGCCTAAA
7657386 ACGACACACGAGGTGTCTGAT
1 ACGACACACGAGGTGTCTGAT
7657407 ACGACACACGAGGTGTCTGAT
1 ACGACACACGAGGTGTCTGAT
*
7657428 ACGACACGCGAGGTG
1 ACGACACACGAGGTG
7657443 CCTAAAATAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.28, C:0.25, G:0.32, T:0.16
Consensus pattern (21 bp):
ACGACACACGAGGTGTCTGAT
Found at i:7688678 original size:27 final size:27
Alignment explanation
Indices: 7688647--7688700 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
7688637 TTTAATTTTA
* *
7688647 AAAAAAATAAAATATTATAAAAGTCATG
1 AAAAATATAAAAAATT-TAAAAGTCATG
*
7688675 AAAAATATAAAAAATTTAAAATTCAT
1 AAAAATATAAAAAATTTAAAAGTCAT
7688701 TATCAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (27 bp):
AAAAATATAAAAAATTTAAAAGTCATG
Found at i:7688805 original size:19 final size:21
Alignment explanation
Indices: 7688764--7688811 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
7688754 TTAAATTTTT
7688764 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
7688785 AA-TAAAAAT-TTAGAATCAA
1 AACTAAAAATATTAAAATAAA
7688804 AACTAAAA
1 AACTAAAA
7688812 TAAATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:7693256 original size:40 final size:40
Alignment explanation
Indices: 7693201--7693549 Score: 300
Period size: 40 Copynumber: 8.8 Consensus size: 40
7693191 CCCTTGTCAT
** ** *
7693201 GCACGAATGCTCTTCGGGGTTTAGCATGGATATATCACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTA
* *
7693241 GCACGAATGCTCTTCGGAACTTAGCCCAGATACATCACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTA
* *
7693281 GCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTG
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTA
*
7693321 GCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTA
* * * * *
7693361 GCATGAATGCTCTTCGGGACTTAGCCCGGTTATAGTAACTC
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACA-TCACTA
* * ** * *
7693402 GCACAAATGC-CTTCGGGACTTAACCCGGATTTAGTAACTC
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACA-TCACTA
* * * * *
7693442 GCACCAATGC-CTTCGGG-CTTAGCCCGAAATTA-GTAACTC
1 GCACGAATGCTCTTCGGGACTTAGCCCG-GA-TACATCACTA
* * **
7693481 GCACAAATGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTA
1 GCACGAATGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TA
*
7693522 GCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGA
7693550 CATCATTCGA
Statistics
Matches: 263, Mismatches: 37, Indels: 18
0.83 0.12 0.06
Matches are distributed among these distances:
38 4 0.02
39 28 0.11
40 210 0.80
41 21 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTA
Found at i:7693416 original size:80 final size:80
Alignment explanation
Indices: 7693205--7693549 Score: 335
Period size: 80 Copynumber: 4.3 Consensus size: 80
7693195 TGTCATGCAC
** ** * * * *
7693205 GAATGCTCTTCGGGGTTTAGCATGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAG
1 GAATGCTCTTCGGGACTTAGCCCGGATATATAACTCGCACAAATGCTCTTCGGAACTTAGCCCGG
7693270 ATACATCACTAGCAT
66 ATACATCACTAGCAT
* * * *
7693285 GAATGCTCTTCGGGACTTAGCCCGGATACATCACTGGCACGAATGCTCTTCGGAACTTAGCCCGG
1 GAATGCTCTTCGGGACTTAGCCCGGATATATAACTCGCACAAATGCTCTTCGGAACTTAGCCCGG
7693350 ATACATCACTAGCAT
66 ATACATCACTAGCAT
* * *
7693365 GAATGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC-CTTCGGGACTTAACCCG
1 GAATGCTCTTCGGGACTTAGCCCGGATATA-TAACTCGCACAAATGCTCTTCGGAACTTAGCCCG
** * * *
7693429 GATTTAGTAACTCGCAC
65 GATACA-TCACTAGCAT
* * * *
7693446 CAATGC-CTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCACAAATGC-CTTCGGATCTTAGTCC
1 GAATGCTCTTCGGGACTTAGCCCGGATA-TA-TAACTCGCACAAATGCTCTTCGGAACTTAGCCC
**
7693507 GGATATGGTCACTTAGCA-
64 GGATA-CATCAC-TAGCAT
* *
7693525 CAAAGC-CTTCGGGACTTAGCCCGGA
1 GAATGCTCTTCGGGACTTAGCCCGGA
7693550 CATCATTCGA
Statistics
Matches: 226, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
78 2 0.01
79 58 0.26
80 139 0.62
81 27 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
GAATGCTCTTCGGGACTTAGCCCGGATATATAACTCGCACAAATGCTCTTCGGAACTTAGCCCGG
ATACATCACTAGCAT
Found at i:7695450 original size:37 final size:37
Alignment explanation
Indices: 7695400--7695478 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
7695390 TTATTACGAA
* * *
7695400 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
7695437 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
7695474 GTCTT
1 GTCTT
7695479 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:7695675 original size:47 final size:47
Alignment explanation
Indices: 7695597--7695818 Score: 322
Period size: 47 Copynumber: 4.7 Consensus size: 47
7695587 CCCTTCGGGA
* * * * * *
7695597 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7695644 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7695691 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7695738 CTTATCACATATAT-CACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
7695784 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
7695819 AGAATCCTAA
Statistics
Matches: 161, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
46 46 0.29
47 115 0.71
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7695795 original size:93 final size:94
Alignment explanation
Indices: 7695597--7695818 Score: 331
Period size: 93 Copynumber: 2.4 Consensus size: 94
7695587 CCCTTCGGGA
* * * * *
7695597 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
7695662 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
7695691 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-CAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
7695755 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
7695784 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATCCATCACAT
7695819 AGAATCCTAA
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
92 1 0.01
93 62 0.53
94 53 0.46
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Done.