Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 193 of 325
Found at i:60616314 original size:42 final size:42
Alignment explanation
Indices: 60616256--60616367 Score: 172
Period size: 42 Copynumber: 2.7 Consensus size: 42
60616246 ATGCCAATAG
* *
60616256 CCCAGCTATGGTCTTACACAAAATCTCAT-ATCGATGTTATAT
1 CCCAGATATGGTCTTACACAAAATCTCATAAT-GATGTCATAT
*
60616298 CCCAGATATGGTCTTACACGAAATCTCATAATGATGTCATAT
1 CCCAGATATGGTCTTACACAAAATCTCATAATGATGTCATAT
*
60616340 CCCAGATATGGTCTTACACAAAGTCTCA
1 CCCAGATATGGTCTTACACAAAATCTCA
60616368 GTAACCCTAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 62 0.97
43 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACAAAATCTCATAATGATGTCATAT
Found at i:60618343 original size:20 final size:18
Alignment explanation
Indices: 60618307--60618348 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
60618297 AACAAATCTA
60618307 AAAACTATAGAAATTTATT
1 AAAACTATAGAAATTTA-T
60618326 AAAA-TATAGAAATGTTTAT
1 AAAACTATAGAAA--TTTAT
60618345 AAAA
1 AAAA
60618349 AAACATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (18 bp):
AAAACTATAGAAATTTAT
Found at i:60618349 original size:20 final size:19
Alignment explanation
Indices: 60618305--60618349 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
60618295 AAAACAAATC
60618305 TAAAAACTATAGAAATTTA
1 TAAAAACTATAGAAATTTA
*
60618324 TTAAAA-TATAGAAATGTTTA
1 TAAAAACTATAGAAA--TTTA
60618344 TAAAAA
1 TAAAAA
60618350 AACATAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 8 0.36
19 5 0.23
20 9 0.41
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (19 bp):
TAAAAACTATAGAAATTTA
Found at i:60620132 original size:48 final size:48
Alignment explanation
Indices: 60620033--60620320 Score: 274
Period size: 48 Copynumber: 6.0 Consensus size: 48
60620023 ATACTAGGGT
* * * * * * * **
60620033 TATGTGAGCCAGTATAAGACCATGTTTGGAACATGACATCGACATTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA
* *
60620081 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCACCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA
* * * *
60620129 TATGTGAGCTAGTGTACA-ACCATGTTTGGAACATGGCATCAGCATCGA
1 TATGAGAGCTAGTGTA-AGACCATGTCTGGGACATGGCATCGGCATCGA
* * *
60620177 TATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA
* * * * * *
60620225 TAT-ATGAGCTAGTGTAAGACTATGTTTGGAACATGGAATCGGTATTGATA
1 TATGA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG--A
* * * *
60620275 TATGAGAACTAGTGTAAGACTATGTCTGGGAGATGGCATTGGCATC
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
60620321 TTACCCTTTG
Statistics
Matches: 194, Mismatches: 40, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
47 2 0.01
48 153 0.79
49 1 0.01
50 37 0.19
51 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA
Found at i:60620197 original size:96 final size:95
Alignment explanation
Indices: 60620033--60620312 Score: 364
Period size: 96 Copynumber: 2.9 Consensus size: 95
60620023 ATACTAGGGT
* * * * *
60620033 TATGTGAGCCAGTATAAGACCATGTTTGGAACATGACATCGACATTAATATGAGAGCTAGTGTAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCG-CATTGATATAAGAGCTAGTGTAA
*
60620098 GACCATGTCTGGGACATGGCACCGGCCTCGA
65 GACCATGTCTGGGACATGGCACCGACCTCGA
*
60620129 TATGTGAGCTAGTGTACA-ACCATGTTTGGAACATGGCATCAGCATCGATATAAGAGCTAGTGTA
1 TATGTGAGCTAGTGTA-AGACCATGTTTGGAACATGGCATC-GCATTGATATAAGAGCTAGTGTA
*
60620193 AGACCATGTCTGGGACATGGCATCGACCTCGA
64 AGACCATGTCTGGGACATGGCACCGACCTCGA
* * * * *
60620225 TATATGAGCTAGTGTAAGACTATGTTTGGAACATGGAATCGGTATTGATATATGAGAACTAGTGT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATC-GCATTGATATA--AGAGCTAGTGT
* *
60620290 AAGACTATGTCTGGGAGATGGCA
63 AAGACCATGTCTGGGACATGGCA
60620313 TTGGCATCTT
Statistics
Matches: 162, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
95 1 0.01
96 128 0.79
97 2 0.01
98 31 0.19
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (95 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGCATTGATATAAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCACCGACCTCGA
Found at i:60627869 original size:48 final size:48
Alignment explanation
Indices: 60627787--60628169 Score: 419
Period size: 48 Copynumber: 8.0 Consensus size: 48
60627777 ATACTAGGGT
* * *** **
60627787 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTTACATTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* *
60627835 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* * *
60627883 TATGTGAGCTAGTGTAAGACTATGTTTGGAACATGGCATCGGCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* * * * * *
60627931 TATAAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGACCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* * **
60627979 TATGTGAGCTAGTGTAAGACTATGTTTGGAACATGGCATCGGCATTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
** * ** *
60628027 TATGAGAGCTAGTGTAAGACCATGCCTGGGACAT-GCATTTGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* * * *
60628074 TATGTGAGCTAATATAAGACCATGTTTGGAACATGCCATCGGCA-CTGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATC-G--A
* *
60628124 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATC
60628170 TTACCCTTTT
Statistics
Matches: 271, Mismatches: 59, Indels: 7
0.80 0.18 0.02
Matches are distributed among these distances:
47 37 0.14
48 194 0.72
50 39 0.14
51 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
Found at i:60627951 original size:96 final size:96
Alignment explanation
Indices: 60627787--60628166 Score: 555
Period size: 96 Copynumber: 3.9 Consensus size: 96
60627777 ATACTAGGGT
* *** *
60627787 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTTACATTAATATGAGAGCTAGTGTAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATAAGAGCTAGTGTAA
*
60627852 GACCATGTTTGGGACATGGCATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * *
60627883 TATGTGAGCTAGTGTAAGACTATGTTTGGAACATGGCATCGGCATTGATATAAGAGCTAGTATAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATAAGAGCTAGTGTAA
*
60627948 GACCATGTCTGGGACATGGCATCGACCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* *
60627979 TATGTGAGCTAGTGTAAGACTATGTTTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATAAGAGCTAGTGTAA
* **
60628044 GACCATGCCTGGGACAT-GCATTTGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * * *
60628074 TATGTGAGCTAATATAAGACCATGTTTGGAACATGCCATCGGCACTGATATATGAGAGCTAGTGT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCA-TTA-ATATAAGAGCTAGTGT
60628139 AAGACCATGTCTGGGACATGGCATCGGC
64 AAGACCATGTCTGGGACATGGCATCGGC
60628167 ATCTTACCCT
Statistics
Matches: 256, Mismatches: 25, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
95 50 0.20
96 166 0.65
97 34 0.13
98 6 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (96 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATAAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:60629783 original size:18 final size:18
Alignment explanation
Indices: 60629760--60629801 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
60629750 TGTATCTTAC
*
60629760 AATTTTATGATTTT-TTAT
1 AATTTT-TGATTTTACTAT
*
60629778 AATTTTTTATTTTACTAT
1 AATTTTTGATTTTACTAT
60629796 AATTTT
1 AATTTT
60629802 CTGTTTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
AATTTTTGATTTTACTAT
Found at i:60629808 original size:18 final size:18
Alignment explanation
Indices: 60629775--60629809 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60629765 TATGATTTTT
*
60629775 TATAATTTTTTATTTTAC
1 TATAATTTTCTATTTTAC
*
60629793 TATAATTTTCTGTTTTA
1 TATAATTTTCTATTTTA
60629810 TAATATATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.66
Consensus pattern (18 bp):
TATAATTTTCTATTTTAC
Found at i:60629847 original size:10 final size:10
Alignment explanation
Indices: 60629832--60629880 Score: 66
Period size: 10 Copynumber: 4.9 Consensus size: 10
60629822 TTTCTAAAAA
60629832 TTTTAATAAT
1 TTTTAATAAT
60629842 TTTTAATAAT
1 TTTTAATAAT
60629852 TTTCT-ATATAT
1 TTT-TAATA-AT
60629863 TTTT-ATAAT
1 TTTTAATAAT
60629872 TTTTAATAA
1 TTTTAATAA
60629881 CTTATTTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 6 0.17
10 24 0.67
11 6 0.17
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:60629855 original size:30 final size:30
Alignment explanation
Indices: 60629821--60629880 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
60629811 AATATATATT
60629821 TTTTCTAAAAATTTTAATAATTTTTAATAA
1 TTTTCTAAAAATTTTAATAATTTTTAATAA
* * *
60629851 TTTTCTATATATTTTTATAATTTTTAATAA
1 TTTTCTAAAAATTTTAATAATTTTTAATAA
60629881 CTTATTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (30 bp):
TTTTCTAAAAATTTTAATAATTTTTAATAA
Found at i:60629908 original size:32 final size:30
Alignment explanation
Indices: 60629837--60629900 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
60629827 AAAAATTTTA
*
60629837 ATAATTTTTAATAATTTTCTATATATTTTT
1 ATAATTTTTAATAATTTTCTATATATTCTT
* *
60629867 ATAATTTTTAATAACTTATTTTCTATATTCTT
1 ATAATTTTTAATAA-TT-TTCTATATATTCTT
60629899 AT
1 AT
60629901 TGTTTTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 14 0.48
31 2 0.07
32 13 0.45
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (30 bp):
ATAATTTTTAATAATTTTCTATATATTCTT
Found at i:60630069 original size:21 final size:21
Alignment explanation
Indices: 60630039--60630092 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
60630029 TTTTATGAAA
60630039 TTTT-TATATTTTATAAT-AT
1 TTTTATATATTTTATAATAAT
60630058 TTTTGATATATTTT-TAATAAT
1 TTTT-ATATATTTTATAATAAT
60630079 TTTTATA-ATTTTAT
1 TTTTATATATTTTAT
60630093 CTAAATTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 9 0.29
20 8 0.26
21 14 0.45
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTATATATTTTATAATAAT
Found at i:60630135 original size:8 final size:9
Alignment explanation
Indices: 60630115--60630156 Score: 59
Period size: 10 Copynumber: 4.6 Consensus size: 9
60630105 CTTTTCTATT
60630115 TTTTTATAAA
1 TTTTTAT-AA
60630125 TTTTTAT-A
1 TTTTTATAA
60630133 TTTTTATAA
1 TTTTTATAA
60630142 TTTTTATTAA
1 TTTTTA-TAA
60630152 TTTTT
1 TTTTT
60630157 TTAAGTTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.27
9 7 0.23
10 15 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTATAA
Found at i:60630138 original size:18 final size:17
Alignment explanation
Indices: 60630038--60630148 Score: 71
Period size: 19 Copynumber: 6.0 Consensus size: 17
60630028 CTTTTATGAA
60630038 ATTTTTAT-ATTTTATAAT
1 ATTTTTATAATTTT-T-AT
60630056 ATTTTTGATATATTTTTAAT
1 ATTTTT-ATA-ATTTTT-AT
*
60630076 AATTTTTATAATTTTATCT
1 -ATTTTTATAATTTT-TAT
* ** *
60630095 AAATTAAATACTTTTCTAT
1 -ATTTTTATAATTTT-TAT
*
60630114 TTTTTTATAAATTTTTAT
1 ATTTTTAT-AATTTTTAT
60630132 ATTTTTATAATTTTTAT
1 ATTTTTATAATTTTTAT
60630149 TAATTTTTTT
Statistics
Matches: 74, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
17 9 0.12
18 20 0.27
19 26 0.35
20 8 0.11
21 11 0.15
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (17 bp):
ATTTTTATAATTTTTAT
Found at i:60630168 original size:27 final size:27
Alignment explanation
Indices: 60630115--60630173 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
60630105 CTTTTCTATT
** *
60630115 TTTTTATAAATTTTTATATTTTTATAA
1 TTTTTATAAATTTTTATAAGTTGATAA
* *
60630142 TTTTTATTAATTTTTTTAAGTTGATAA
1 TTTTTATAAATTTTTATAAGTTGATAA
60630169 TTTTT
1 TTTTT
60630174 TCGCCATGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (27 bp):
TTTTTATAAATTTTTATAAGTTGATAA
Found at i:60630501 original size:26 final size:24
Alignment explanation
Indices: 60630467--60630515 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
60630457 TAAATAAAAA
* *
60630467 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAA-CAAATAC
60630493 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
60630516 TTAAAACAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAC
Found at i:60637736 original size:40 final size:40
Alignment explanation
Indices: 60637688--60637808 Score: 134
Period size: 40 Copynumber: 3.0 Consensus size: 40
60637678 GTAGTGCTAT
*
60637688 CAGAGGCACGATTATGCAATTAGAGGTATCGAAGTGCAAA
1 CAGAGGCACGATTATGCAATTAGAGGCATCGAAGTGCAAA
* * * * * * *
60637728 TAGGGGCACAATTTTACAATTAGAGGCACCAAAGTGCAAA
1 CAGAGGCACGATTATGCAATTAGAGGCATCGAAGTGCAAA
* * * *
60637768 CAGAGGTATGATTGTGCAATTAGAGGCATCGAAGTACAAA
1 CAGAGGCACGATTATGCAATTAGAGGCATCGAAGTGCAAA
60637808 C
1 C
60637809 CCGTACAAGC
Statistics
Matches: 63, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.21
Consensus pattern (40 bp):
CAGAGGCACGATTATGCAATTAGAGGCATCGAAGTGCAAA
Found at i:60641977 original size:39 final size:39
Alignment explanation
Indices: 60641923--60642001 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
60641913 AACTGAGAGG
*
60641923 TAAGCACTCACAATCCTTTGGTATGCCAACATAAGGCTC
1 TAAGCACTCACAATCCTTTGGTATACCAACATAAGGCTC
60641962 TAAGCACTCACAATCCTTTGGTATACCAACATAAGGCTC
1 TAAGCACTCACAATCCTTTGGTATACCAACATAAGGCTC
60642001 T
1 T
60642002 CGAAGGAGCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (39 bp):
TAAGCACTCACAATCCTTTGGTATACCAACATAAGGCTC
Found at i:60643372 original size:21 final size:21
Alignment explanation
Indices: 60643339--60643395 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
60643329 CTACGTCACT
60643339 GTCATCGTCGACCACCATTGG
1 GTCATCGTCGACCACCATTGG
* *
60643360 GTCATTGTTGACCACCATTGG
1 GTCATCGTCGACCACCATTGG
* *
60643381 GCCATCATCGACCAC
1 GTCATCGTCGACCAC
60643396 AGTCGTTGGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (21 bp):
GTCATCGTCGACCACCATTGG
Found at i:60645968 original size:20 final size:21
Alignment explanation
Indices: 60645923--60645973 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
60645913 TGGAGTAGGA
* * *
60645923 ATATCTATACCTTTAGGAAAT
1 ATATCGATACCTTAAGAAAAT
60645944 ATATCGATACCTTAAGAAAAT
1 ATATCGATACCTTAAGAAAAT
60645965 -TATCGATAC
1 ATATCGATAC
60645974 TGAATCGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (21 bp):
ATATCGATACCTTAAGAAAAT
Found at i:60648210 original size:37 final size:37
Alignment explanation
Indices: 60648160--60648238 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
60648150 TTATTACGAA
* * *
60648160 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
60648197 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
60648234 GTCTT
1 GTCTT
60648239 TAGAGCTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:60648435 original size:47 final size:47
Alignment explanation
Indices: 60648359--60648578 Score: 318
Period size: 47 Copynumber: 4.7 Consensus size: 47
60648349 CTTCGGGACT
* * * * * *
60648359 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
60648406 TGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
60648453 TAT--CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
60648498 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
60648545 TATCACATATATACACTTTCACATTCATCACATC
1 TATCACATATATACACTTTCACATTCATCACATC
60648579 TATACACTTT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
45 44 0.27
47 117 0.73
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:60648516 original size:92 final size:93
Alignment explanation
Indices: 60648357--60648578 Score: 329
Period size: 92 Copynumber: 2.4 Consensus size: 93
60648347 CCCTTCGGGA
* * * * * *
60648357 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
60648422 TTTCACATTCATCACATTGGCCATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
* *
60648451 CTTAT-CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 CTTATACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACACT
*
60648515 TTCACATTCATCACATCGGCTATTAGGC
66 TTCACATTCATCACATCGGCCATTAGGC
60648543 CTTATCACATATATACACTTTCACATTCATCACATC
1 CTTAT-ACATATATACACTTTCACATTCATCACATC
60648579 TATACACTTT
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
92 82 0.71
94 34 0.29
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (93 bp):
CTTATACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGC
Found at i:60648582 original size:25 final size:25
Alignment explanation
Indices: 60648546--60648603 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
60648536 ATTAGGCCTT
*
60648546 ATCACATATATACACTTTCACATTC
1 ATCACATCTATACACTTTCACATTC
60648571 ATCACATCTATACACTTTCACATTC
1 ATCACATCTATACACTTTCACATTC
60648596 ATCACATC
1 ATCACATC
60648604 GGCCATTAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (25 bp):
ATCACATCTATACACTTTCACATTC
Found at i:60648591 original size:72 final size:74
Alignment explanation
Indices: 60648499--60648654 Score: 262
Period size: 72 Copynumber: 2.1 Consensus size: 74
60648489 ATTAGGCCTT
* *
60648499 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATAT-ACACT
1 ATCACATCTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAACACT
60648562 TTCACATTC
66 TTCACATTC
60648571 ATCACATCTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACA
1 ATCACATCTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATA-ACA
60648636 CTTTCACATTC
64 CTTTCACATTC
60648647 ATCACATC
1 ATCACATC
60648655 GGCCATTAGG
Statistics
Matches: 78, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
72 50 0.64
74 6 0.08
76 22 0.28
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.33
Consensus pattern (74 bp):
ATCACATCTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAACACT
TTCACATTC
Found at i:60648634 original size:49 final size:47
Alignment explanation
Indices: 60648571--60648879 Score: 546
Period size: 47 Copynumber: 6.4 Consensus size: 47
60648561 TTTCACATTC
*
60648571 ATCACATCTATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
60648618 ATCACATATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCAC--ATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTT
60648669 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
60648718 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
60648765 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
60648812 ATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
60648859 ATCACATATATACACTTTCAC
1 ATCACATATATACACTTTCAC
60648880 GTATACACAC
Statistics
Matches: 255, Mismatches: 3, Indels: 8
0.96 0.01 0.03
Matches are distributed among these distances:
47 160 0.63
49 46 0.18
51 49 0.19
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:60648731 original size:219 final size:211
Alignment explanation
Indices: 60648360--60648797 Score: 714
Period size: 219 Copynumber: 2.0 Consensus size: 211
60648350 TTCGGGACTT
* * * * *
60648360 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTT
1 ATCACATCTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTT
*
60648425 CACATTCATCACATTGGCCATTAGGCCTTATCATATATACACTTTCACATTCATCACATCGGCCA
66 CACATTCATCACATCGGCCATTAGGCCTTATCATATATACACTTTCACATTCATCACATCGGCCA
*
60648490 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT
131 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
60648555 ATACACTTTCACATTC
196 ATACACTTTCACATTC
* * *
60648571 ATCACATCTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACA
1 ATCACATCTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATAT--ACA
60648636 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
62 CTTTCACATTCATCACATCGGCCATTAGGCCTTAT--C--ATATATACACTTTCACATTCATCAC
60648701 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
123 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
60648766 TCACATATATACACTTTCACATTC
188 TCACATATATACACTTTCACATTC
60648790 ATCACATC
1 ATCACATC
60648798 GGCCATTAGG
Statistics
Matches: 209, Mismatches: 10, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
211 44 0.21
213 6 0.03
215 37 0.18
217 1 0.00
219 121 0.58
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (211 bp):
ATCACATCTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCATATATACACTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
ATACACTTTCACATTC
Found at i:60669047 original size:36 final size:36
Alignment explanation
Indices: 60669002--60669167 Score: 147
Period size: 36 Copynumber: 4.6 Consensus size: 36
60668992 AACCTCGACG
* * * *
60669002 TGCATATGAAGACGAGACCGAACATCAACCCTGACA
1 TGCACATGAAGACGAGGCCGAAGATCAACCCTAACA
* * *
60669038 TGCACATGAAGACGAGGCTGAAGATCAA-CTTCAACG
1 TGCACATGAAGACGAGGCCGAAGATCAACCCT-AACA
* * *
60669074 TGTACATG-AGATGAGGCCGAAGATCAACCCCAACA
1 TGCACATGAAGACGAGGCCGAAGATCAACCCTAACA
* * * * * *
60669109 TGGACATGAAGATGAGGCTGAAGATCAACCTTGACG
1 TGCACATGAAGACGAGGCCGAAGATCAACCCTAACA
* *
60669145 TGCACATGAAGACAAGGCTGAAG
1 TGCACATGAAGACGAGGCCGAAG
60669168 TCCCAGTGGA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
35 29 0.28
36 76 0.72
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (36 bp):
TGCACATGAAGACGAGGCCGAAGATCAACCCTAACA
Found at i:60669146 original size:71 final size:71
Alignment explanation
Indices: 60668990--60669153 Score: 204
Period size: 71 Copynumber: 2.3 Consensus size: 71
60668980 AGGTCACCGT
* * **
60668990 TCAACCTCGACGTGCATATGAAGACGAGACCGAACATCAACCCTGACATGCACATGAAGACGAGG
1 TCAACCTTGACGTGCACATG-AGACGAGACCGAACATCAACCCCAACATGCACATGAAGACGAGG
60669055 CTGAAGA
65 CTGAAGA
* * * * * * *
60669062 TCAA-CTTCAACGTGTACATGAGATGAGGCCGAAGATCAACCCCAACATGGACATGAAGATGAGG
1 TCAACCTT-GACGTGCACATGAGACGAGACCGAACATCAACCCCAACATGCACATGAAGACGAGG
60669126 CTGAAGA
65 CTGAAGA
60669133 TCAACCTTGACGTGCACATGA
1 TCAACCTTGACGTGCACATGA
60669154 AGACAAGGCT
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
71 61 0.79
72 16 0.21
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (71 bp):
TCAACCTTGACGTGCACATGAGACGAGACCGAACATCAACCCCAACATGCACATGAAGACGAGGC
TGAAGA
Found at i:60672795 original size:42 final size:41
Alignment explanation
Indices: 60672683--60672802 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 41
60672673 GTACCGTACC
* ** **
60672683 ATGCCATATCCCAAATATGGTCTTACATGTAATCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CAAATCTCATATCG
* * * *
60672725 ATGCCAATAGCCTAGCTATGGTCTTACACAAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAA-TCTCATATCG
60672768 ATGCCATATCCCAGATATGGTCTTACACATAATCT
1 ATGCCATATCCCAGATATGGTCTTACACA-AATCT
60672803 TATGAACCTT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 31 0.49
43 32 0.51
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACAAATCTCATATCG
Found at i:60675192 original size:26 final size:26
Alignment explanation
Indices: 60675160--60675209 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
60675150 TTTCATCCTT
60675160 ATTTTACCCCCAGTAAAATTTTGACG
1 ATTTTACCCCCAGTAAAATTTTGACG
***
60675186 ATTTTACCCTTGGTAAAATTTTGA
1 ATTTTACCCCCAGTAAAATTTTGA
60675210 GAAACTATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (26 bp):
ATTTTACCCCCAGTAAAATTTTGACG
Found at i:60675488 original size:10 final size:10
Alignment explanation
Indices: 60675463--60675491 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
60675453 TTTCCCATTT
60675463 TTTCTATTCA
1 TTTCTATTCA
60675473 -TTCTATTCA
1 TTTCTATTCA
60675482 TTTCTATTCA
1 TTTCTATTCA
60675492 AACACGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.59
Consensus pattern (10 bp):
TTTCTATTCA
Found at i:60678484 original size:27 final size:28
Alignment explanation
Indices: 60678400--60678497 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
60678390 CATGAGATTG
* * * *
60678400 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
60678429 GCACTAAGTGTACGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
60678457 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
60678484 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
60678498 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:60678508 original size:27 final size:27
Alignment explanation
Indices: 60678428--60678510 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
60678418 TAAATTGTAC
* * *
60678428 AGCACTAAGTGTACGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
60678456 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
60678483 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
60678510 A
1 A
60678511 TTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 30 0.61
28 19 0.39
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:60678511 original size:29 final size:27
Alignment explanation
Indices: 60678400--60678511 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
60678390 CATGAGATTG
** * *
60678400 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* * *
60678429 GCACTAAGTGTACGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
60678457 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
60678484 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
60678512 TTTTGAATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 23 0.33
28 27 0.39
29 20 0.29
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:60687925 original size:21 final size:22
Alignment explanation
Indices: 60687884--60687926 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
60687874 ATTTTAGTAA
*
60687884 AGTATGTAATTTTATGAAATTT
1 AGTATGTAATTTTATCAAATTT
60687906 AGTAT-TAATTTT-TCATAATTT
1 AGTATGTAATTTTATCA-AATTT
60687927 TACTATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 2 0.11
21 12 0.63
22 5 0.26
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.53
Consensus pattern (22 bp):
AGTATGTAATTTTATCAAATTT
Found at i:60689036 original size:41 final size:41
Alignment explanation
Indices: 60688986--60689082 Score: 115
Period size: 41 Copynumber: 2.4 Consensus size: 41
60688976 ATGCCGCAAT
* *
60688986 AGGTAAAGCAGTAGCAACGTTTATGAGAAAAAAACTC-CAAA
1 AGGTAAAGCATTAGCAACATTTATGAGAAAAAAAC-CACAAA
* ** *
60689027 AGGTTAAGCATTAGCGGCATTTATGAGAAAAACACCACAAA
1 AGGTAAAGCATTAGCAACATTTATGAGAAAAAAACCACAAA
*
60689068 AGGTCAAGCATTAGC
1 AGGTAAAGCATTAGC
60689083 TGTGCTATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 1 0.02
41 47 0.98
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (41 bp):
AGGTAAAGCATTAGCAACATTTATGAGAAAAAAACCACAAA
Found at i:60689147 original size:40 final size:39
Alignment explanation
Indices: 60689006--60689139 Score: 135
Period size: 40 Copynumber: 3.3 Consensus size: 39
60688996 GTAGCAACGT
* * * *
60689006 TTATGAGAAAAAAACTC-CAAAAGGTTAAGCATTAGCGGCAT
1 TTATGAGAAAAACAC-CGCAAAAGGTCAAGCATTAG-TGC-G
* *
60689047 TTATGAGAAAAACACCACAAAAGGTCAAGCATTAGCTGTG
1 TTATGAGAAAAACACCGCAAAAGGTCAAGCATTAG-TGCG
* **
60689087 CTATGAGAAAAATGCCGCAAAAGGTCAAGCATTAGTAGCG
1 TTATGAGAAAAACACCGCAAAAGGTCAAGCATTAGT-GCG
60689127 TTATGAGAAAAAC
1 TTATGAGAAAAAC
60689140 GCTGCAAAGT
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 45 0.57
41 33 0.42
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (39 bp):
TTATGAGAAAAACACCGCAAAAGGTCAAGCATTAGTGCG
Found at i:60689256 original size:21 final size:21
Alignment explanation
Indices: 60689232--60689275 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
60689222 CCTTATTTTT
60689232 TCCCTAAACATT-TTCCCCAAA
1 TCCCTAAA-ATTATTCCCCAAA
*
60689253 TCCCTAAATTTATTCCCCAAA
1 TCCCTAAAATTATTCCCCAAA
60689274 TC
1 TC
60689276 AAAATCCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (21 bp):
TCCCTAAAATTATTCCCCAAA
Found at i:60702167 original size:43 final size:43
Alignment explanation
Indices: 60702120--60702292 Score: 133
Period size: 43 Copynumber: 4.0 Consensus size: 43
60702110 AGAGCAAGAC
*
60702120 CTTTAGCCACGTTTTTGGGAAAAGCATTGCTAAAGGTCATGTT
1 CTTTAGCCACGTTTTTGGGAAAAGCACTGCTAAAGGTCATGTT
** * * * * *
60702163 CTTTAGCGGCGTTTGTGGGGAAAGTACCGCTAAAGGTCATGTC
1 CTTTAGCCACGTTTTTGGGAAAAGCACTGCTAAAGGTCATGTT
* *
60702206 CTTTAG-CA-GTGTTTGTGGGGAAAGCGCTGCTAAAGGTCATGCTT
1 CTTTAGCCACGT-TTT-TGGGAAAAGCACTGCTAAAGGTCATG-TT
* ** *
60702250 -TGTAGCGGCGTTTTTGTGAGAAAA-C-C-ACTAAAGGTCATGTT
1 CTTTAGCCACGTTTTTG-G-GAAAAGCACTGCTAAAGGTCATGTT
60702291 CT
1 CT
60702293 ATAGTGGTGC
Statistics
Matches: 102, Mismatches: 20, Indels: 17
0.73 0.14 0.12
Matches are distributed among these distances:
41 4 0.04
42 15 0.15
43 71 0.70
44 6 0.06
45 6 0.06
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
CTTTAGCCACGTTTTTGGGAAAAGCACTGCTAAAGGTCATGTT
Found at i:60704665 original size:86 final size:85
Alignment explanation
Indices: 60704572--60704889 Score: 288
Period size: 86 Copynumber: 3.7 Consensus size: 85
60704562 CAACCTTTGT
* * * * *
60704572 AAAGGAAAGCCTTTGTGGCGAACCTTTAAAAATAAAATCTTTTGTGGAAAAGCTCTACAAATGAG
1 AAAGGAAAGCCTTTGTGGCGAACCTTT-AAAATAAAAGCCTTTGTGGCAAACCTCTACAAAGGAG
*
60704637 AACCTTTATGGAAAACCTCTA
65 AACCTTTATGGAGAACCTCTA
* *** * * *
60704658 AAAGGAAAGCCTTTGTGGC-AAACTCCCAAA-GAGAGCCTTTGTGGCAAACCTCTAAAAAGGAG-
1 AAAGGAAAGCCTTTGTGGCGAACCTTTAAAATAAAAGCCTTTGTGGCAAACCTCTACAAAGGAGA
* * *
60704720 AGCTTTAGTGGTGAACCTCTG
66 ACCTTTA-TGGAGAACCTCTA
* * * * * *
60704741 AAAGGAAATCCTTTATGGTGAACCTCTGAAATGAAAAGCCTTTGTGGCAAACCTCTGCAAAGGAG
1 AAAGGAAAGCCTTTGTGGCGAACCTTTAAAAT-AAAAGCCTTTGTGGCAAACCTCTACAAAGGAG
* * *
60704806 AGCCTTTTTGTAGAACCTCTA
65 AACCTTTATGGAGAACCTCTA
* * *
60704827 AACGGAAAGCCTTTGTGGCAAACCTCTGT-AAA-GAAAGCCTTTGTGGC-AACCTCTGACAAAGG
1 AAAGGAAAGCCTTTGTGGCGAACCT-T-TAAAATAAAAGCCTTTGTGGCAAACCTCT-ACAAAGG
60704889 A
63 A
60704890 AGCCTTGTGG
Statistics
Matches: 184, Mismatches: 40, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
82 6 0.03
83 50 0.27
84 18 0.10
85 25 0.14
86 77 0.42
87 7 0.04
88 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (85 bp):
AAAGGAAAGCCTTTGTGGCGAACCTTTAAAATAAAAGCCTTTGTGGCAAACCTCTACAAAGGAGA
ACCTTTATGGAGAACCTCTA
Found at i:60704680 original size:28 final size:29
Alignment explanation
Indices: 60704548--60704902 Score: 243
Period size: 29 Copynumber: 12.6 Consensus size: 29
60704538 GTTGTTACAA
* * * * *
60704548 AAAGCCCTTGTAGCCAACCTTTGTAAAGG
1 AAAGCCTTTGTGGCAAACCTCTGAAAAGG
* * * **
60704577 AAAGCCTTTGTGGCGAACCTTTAAAAATA
1 AAAGCCTTTGTGGCAAACCTCTGAAAAGG
* * * * *
60704606 AAATCTTTTGTGGAAAAGCTCT-ACAAATG
1 AAAGCCTTTGTGGCAAACCTCTGA-AAAGG
* *
60704635 AGAA-CCTTTATGGAAAACCTCT-AAAAGG
1 A-AAGCCTTTGTGGCAAACCTCTGAAAAGG
**
60704663 AAAGCCTTTGTGGCAAA-CTC-CCAAA-G
1 AAAGCCTTTGTGGCAAACCTCTGAAAAGG
* *
60704689 AGAGCCTTTGTGGCAAACCTCTAAAAAGG
1 AAAGCCTTTGTGGCAAACCTCTGAAAAGG
* **
60704718 AGAG-CTTTAGTGGTGAACCTCTG-AAAGG
1 AAAGCCTTT-GTGGCAAACCTCTGAAAAGG
* * ** * *
60704746 AAATCCTTTATGGTGAACCTCTGAAATGA
1 AAAGCCTTTGTGGCAAACCTCTGAAAAGG
*
60704775 AAAGCCTTTGTGGCAAACCTCTGCAAAGG
1 AAAGCCTTTGTGGCAAACCTCTGAAAAGG
* * * *
60704804 AGAGCCTTT-TTGTAGAACCTCT-AAACGG
1 AAAGCCTTTGTGGCA-AACCTCTGAAAAGG
*
60704832 AAAGCCTTTGTGGCAAACCTCTGTAAA-G
1 AAAGCCTTTGTGGCAAACCTCTGAAAAGG
60704860 AAAGCCTTTGTGGC-AACCTCTGACAAAGG
1 AAAGCCTTTGTGGCAAACCTCTGA-AAAGG
60704889 -AAGCC-TTGTGGCAA
1 AAAGCCTTTGTGGCAA
60704903 TCTCTGGAAT
Statistics
Matches: 260, Mismatches: 50, Indels: 33
0.76 0.15 0.10
Matches are distributed among these distances:
26 17 0.07
27 26 0.10
28 90 0.35
29 125 0.48
30 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (29 bp):
AAAGCCTTTGTGGCAAACCTCTGAAAAGG
Found at i:60704767 original size:57 final size:58
Alignment explanation
Indices: 60704547--60704868 Score: 220
Period size: 57 Copynumber: 5.7 Consensus size: 58
60704537 AGTTGTTACA
* * * * * * * *
60704547 AAAAGCCCTTGTAGCCAACCTTTGTAAAGGAAAGCCTTTGTGG-CGAACCTTTAAAAAT
1 AAAAGCCTTTGTGGCAAACCTCTGCAAAGGAAAGCCTTT-TGGTAGAACCTCTAAAAAG
* * * * * * *
60704605 AAAATCTTTTGTGGAAAAGCTCTACAAATGAGAA-CCTTTATGG-AAAACCTCT-AAAAG
1 AAAAGCCTTTGTGGCAAACCTCTGCAAAGGA-AAGCCTTT-TGGTAGAACCTCTAAAAAG
* * * *
60704662 GAAAGCCTTTGTGGCAAA-CTC-CCAAA-GAGAGCCTTTGTGGCA-AACCTCTAAAAAG
1 AAAAGCCTTTGTGGCAAACCTCTGCAAAGGAAAGCCTTT-TGGTAGAACCTCTAAAAAG
* * ** * * *
60704717 GAGAG-CTTTAGTGGTGAACCTCTG-AAAGGAAATCCTTTATGGT-GAACCTCTGAAATG
1 AAAAGCCTTT-GTGGCAAACCTCTGCAAAGGAAAGCCTTT-TGGTAGAACCTCTAAAAAG
* * *
60704774 AAAAGCCTTTGTGGCAAACCTCTGCAAAGGAGAGCCTTTTTGTAGAACCTCT-AAACG
1 AAAAGCCTTTGTGGCAAACCTCTGCAAAGGAAAGCCTTTTGGTAGAACCTCTAAAAAG
* *
60704831 GAAAGCCTTTGTGGCAAACCTCTGTAAA-GAAAGCCTTT
1 AAAAGCCTTTGTGGCAAACCTCTGCAAAGGAAAGCCTTT
60704869 GTGGCAACCT
Statistics
Matches: 208, Mismatches: 44, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
53 1 0.00
54 21 0.10
55 20 0.10
56 18 0.09
57 88 0.42
58 58 0.28
59 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (58 bp):
AAAAGCCTTTGTGGCAAACCTCTGCAAAGGAAAGCCTTTTGGTAGAACCTCTAAAAAG
Found at i:60704897 original size:27 final size:27
Alignment explanation
Indices: 60704650--60704908 Score: 160
Period size: 28 Copynumber: 9.3 Consensus size: 27
60704640 CTTTATGGAA
*
60704650 AACCTCT-AAAAGGAAAGCCTTTGTGGC
1 AACCTCTGCAAAGG-AAGCCTTTGTGGC
* *
60704677 AAACTC-CCAAA-GAGAGCCTTTGTGGC
1 AACCTCTGCAAAGGA-AGCCTTTGTGGC
** *
60704703 AAACCTCTAAAAAGGAGAG-CTTTAGTGGTG
1 -AACCTCTGCAAAGGA-AGCCTTT-GTGG-C
* * *
60704733 AACCTCTG-AAAGGAAATCCTTTATGGTG
1 AACCTCTGCAAAGG-AAGCCTTTGTGG-C
*
60704761 AACCTCTG-AAATGAAAAGCCTTTGTGGC
1 AACCTCTGCAAA-G-GAAGCCTTTGTGGC
*
60704789 AAACCTCTGCAAAGGAGAGCCTTTTTGTAG-
1 -AACCTCTGCAAAGGA-AGCC--TTTGTGGC
60704819 AACCTCT--AAACGGAAAGCCTTTGTGGC
1 AACCTCTGCAAA-GG-AAGCCTTTGTGGC
* *
60704846 AAACCTCTGTAAAGAAAGCCTTTGTGGC
1 -AACCTCTGCAAAGGAAGCCTTTGTGGC
60704874 AACCTCTGACAAAGGAAGCC-TTGTGGC
1 AACCTCTG-CAAAGGAAGCCTTTGTGGC
*
60704901 AATCTCTG
1 AACCTCTG
60704909 GAATGAAAAG
Statistics
Matches: 189, Mismatches: 20, Indels: 46
0.74 0.08 0.18
Matches are distributed among these distances:
25 1 0.01
26 19 0.10
27 38 0.20
28 65 0.34
29 54 0.29
30 6 0.03
31 6 0.03
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.24
Consensus pattern (27 bp):
AACCTCTGCAAAGGAAGCCTTTGTGGC
Found at i:60720346 original size:38 final size:38
Alignment explanation
Indices: 60720295--60720455 Score: 268
Period size: 38 Copynumber: 4.2 Consensus size: 38
60720285 TCGAAATATG
60720295 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
60720333 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
60720371 ATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* * *
60720409 ATATCCGGGTTAAATCCCACAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
60720447 ATATTCGGG
1 ATATCCGGG
60720456 CCTTTGAGCC
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 115 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
Found at i:60720545 original size:45 final size:46
Alignment explanation
Indices: 60720449--60720562 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 46
60720439 CTGGTATTAT
* * *
60720449 ATTCGGGCCTTT-GAGCCTAGCAGACTATTATACCGGTGAGACATT
1 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATACCGGTGAGACATG
*
60720494 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGA-A-ATG
1 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATACCGGTGAGACATG
60720538 ATATCGGGCC--TCGAGCCTAGCAGGC
1 AT-TCGGGCCTTTCGAGCCTAGCAGGC
60720563 GAAATTTCGG
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
43 15 0.24
44 4 0.06
45 20 0.32
46 24 0.38
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (46 bp):
ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATACCGGTGAGACATG
Found at i:60722010 original size:22 final size:20
Alignment explanation
Indices: 60721962--60722011 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 20
60721952 TCTTAACTAC
*
60721962 TCAAATCCATAGCCAAAACA
1 TCAAATCAATAGCCAAAACA
60721982 TACCAAATCAATATGCCAAAATCA
1 T--CAAATCAATA-GCCAAAA-CA
60722006 TCAAAT
1 TCAAAT
60722012 TTACATAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 14 0.56
23 7 0.28
24 3 0.12
ACGTcount: A:0.50, C:0.26, G:0.04, T:0.20
Consensus pattern (20 bp):
TCAAATCAATAGCCAAAACA
Found at i:60722885 original size:43 final size:43
Alignment explanation
Indices: 60722805--60722928 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 43
60722795 TGTCACATAT
* * * **
60722805 CGATGCCACTGTCCTAGACAGGGTCTTACAAAAAATCAT-ATAA
1 CGATGCCAATGTCCCAGACATGGTCTTACAAGTAATCATAAT-A
*
60722848 CGATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATA
1 CGATGCCAATGTCCCAGACATGGTCTTACAAGTAATCATAATA
* * * * *
60722891 CAATGTCAATGTCCCAAACATGGTTTTACATGTAATCA
1 CGATGCCAATGTCCCAGACATGGTCTTACAAGTAATCA
60722929 CATCTCGGTA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
43 67 0.97
44 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTACAAGTAATCATAATA
Found at i:60732078 original size:27 final size:27
Alignment explanation
Indices: 60732048--60732134 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
60732038 AGAATTAACA
* *
60732048 AAATACTCCTGGTTTGTTAAATTATTG
1 AAATACTCCTGATTTGTAAAATTATTG
**
60732075 AAATAC-CCTCGATTTGTAAAATTACCG
1 AAATACTCCT-GATTTGTAAAATTATTG
*
60732102 AAATA-TCCCCGATTTGTAAAATTATTG
1 AAATACT-CCTGATTTGTAAAATTATTG
60732129 AAATAC
1 AAATAC
60732135 CCTTGTAGTG
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
26 3 0.06
27 44 0.90
28 2 0.04
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (27 bp):
AAATACTCCTGATTTGTAAAATTATTG
Found at i:60732098 original size:54 final size:53
Alignment explanation
Indices: 60732032--60732164 Score: 160
Period size: 54 Copynumber: 2.5 Consensus size: 53
60732022 TAAGACACCA
* * * * *
60732032 GTTTGTAGAATTAACAAAATA-CTCCTGGTTTGTTAAATTATTGAAATACCCTC
1 GTTTGTAAAATTACCAAAATATC-CCCGATTTGTAAAATTATTGAAATACCCTC
* *
60732085 GATTTGTAAAATTACCGAAATATCCCCGATTTGTAAAATTATTGAAATACCCTT
1 G-TTTGTAAAATTACCAAAATATCCCCGATTTGTAAAATTATTGAAATACCCTC
*
60732139 GTAGTGTAAAATTACCAAAATATCCC
1 GT-TTGTAAAATTACCAAAATATCCC
60732165 TATAGGGCAA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
53 2 0.03
54 65 0.96
55 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.35
Consensus pattern (53 bp):
GTTTGTAAAATTACCAAAATATCCCCGATTTGTAAAATTATTGAAATACCCTC
Found at i:60732177 original size:54 final size:54
Alignment explanation
Indices: 60732066--60732177 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
60732056 CTGGTTTGTT
* * ** *
60732066 AAATTATTGAAATACCCTCGATTTGTAAAATTACCGAAATATCCCCGATTTGTA
1 AAATTATTGAAATACCCTCGATGTGTAAAATTACCAAAATATCCCCGATGGGCA
* *
60732120 AAATTATTGAAATACCCTTG-TAGTGTAAAATTACCAAAATAT-CCCTATAGGGCA
1 AAATTATTGAAATACCCTCGAT-GTGTAAAATTACCAAAATATCCCCGAT-GGGCA
60732174 AAAT
1 AAAT
60732178 GACTGTTTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
53 6 0.12
54 43 0.88
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (54 bp):
AAATTATTGAAATACCCTCGATGTGTAAAATTACCAAAATATCCCCGATGGGCA
Found at i:60732667 original size:32 final size:32
Alignment explanation
Indices: 60732603--60732670 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
60732593 ATATTTACCC
* * *
60732603 ATGGCTATGTGCCGATCATATTATAGCAACTG
1 ATGGCTATGTACCGATCAAATTACAGCAACTG
* * *
60732635 ATGGCTTTGTACCGATCAAATTACCGCTACTG
1 ATGGCTATGTACCGATCAAATTACAGCAACTG
60732667 ATGG
1 ATGG
60732671 ATGTAAGCAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (32 bp):
ATGGCTATGTACCGATCAAATTACAGCAACTG
Found at i:60734392 original size:12 final size:12
Alignment explanation
Indices: 60734375--60734399 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60734365 GACCATCCTC
60734375 TATAGACTTCAA
1 TATAGACTTCAA
60734387 TATAGACTTCAA
1 TATAGACTTCAA
60734399 T
1 T
60734400 GCCAAATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TATAGACTTCAA
Found at i:60741370 original size:40 final size:40
Alignment explanation
Indices: 60741311--60741525 Score: 249
Period size: 40 Copynumber: 5.4 Consensus size: 40
60741301 ATTGATAACA
60741311 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
60741350 GAGCTAAGTCCCGAATGCATTTGTGCGAGTTACTATAACA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
60741390 GGGCCAAGTCCCGAAGGCAATTGTACGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* **
60741430 GGGCTAAGTCTCGAAGGCAAGTGTGCGAGTTACTATAAT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATCC
* *
60741470 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
**
60741510 -GGCTAAACCCCGAAGG
1 GGGCTAAGTCCCGAAGG
60741526 TACTTGGTTT
Statistics
Matches: 150, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
39 24 0.16
40 125 0.83
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:60749425 original size:80 final size:80
Alignment explanation
Indices: 60749312--60749531 Score: 313
Period size: 80 Copynumber: 2.8 Consensus size: 80
60749302 ATTCGGATTG
60749312 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAATG-C
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAA-GAC
*
60749375 ATTTGTGCGAGTTACT
65 AATTGTGCGAGTTACT
* * *
60749391 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGACA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGACA
60749456 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * * **
60749471 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCTATATCC-GGCTAAACCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAG
60749532 GTACTTGGTT
Statistics
Matches: 126, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 28 0.22
80 98 0.78
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGACA
ATTGTGCGAGTTACT
Found at i:60749513 original size:40 final size:40
Alignment explanation
Indices: 60749312--60749505 Score: 309
Period size: 40 Copynumber: 4.9 Consensus size: 40
60749302 ATTCGGATTG
60749312 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
60749351 ATATCCGGGCTAAGTCCCGAATGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
60749391 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
60749431 ATAACCGGGCTAAGTCCCGAAGACAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
60749471 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
60749506 AAGCTATATC
Statistics
Matches: 142, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 13 0.09
40 129 0.91
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:60752613 original size:22 final size:22
Alignment explanation
Indices: 60752570--60752659 Score: 83
Period size: 23 Copynumber: 3.9 Consensus size: 22
60752560 AAGCTCCTCC
* *
60752570 TGAGCTGAAACGGTAAGGTCT-A
1 TGAGCTG-AACAGTAAGCTCTAA
60752592 TCGAGCTGAACAGTAAGCTCTAA
1 T-GAGCTGAACAGTAAGCTCTAA
* *
60752615 TGAGCTGAACCGATAAGCTCCAA
1 TGAGCTGAACAG-TAAGCTCTAA
*
60752638 TGAGCTAAAGTCAGTAAGCTCT
1 TGAGCTGAA--CAGTAAGCTCT
60752660 TACGAGTTGA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
22 22 0.39
23 25 0.45
24 7 0.12
25 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (22 bp):
TGAGCTGAACAGTAAGCTCTAA
Found at i:60763941 original size:21 final size:21
Alignment explanation
Indices: 60763903--60763942 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
60763893 TCAATTACAA
*
60763903 AAAAGTATCAACAGCTTTTCG
1 AAAAGTATCAACACCTTTTCG
*
60763924 AAAAGTATCAATACCTTTT
1 AAAAGTATCAACACCTTTT
60763943 ACTAGATATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (21 bp):
AAAAGTATCAACACCTTTTCG
Found at i:60764254 original size:28 final size:28
Alignment explanation
Indices: 60764214--60764270 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
60764204 AGATCAATCA
60764214 ATACAACCTTAGTGTTTAATTCTTTCAT
1 ATACAACCTTAGTGTTTAATTCTTTCAT
60764242 ATACAACCTTAGTGTTTAATTCTTTCAT
1 ATACAACCTTAGTGTTTAATTCTTTCAT
60764270 A
1 A
60764271 CTTTTCTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.46
Consensus pattern (28 bp):
ATACAACCTTAGTGTTTAATTCTTTCAT
Found at i:60777729 original size:17 final size:19
Alignment explanation
Indices: 60777701--60777741 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
60777691 AGGCTGTTTT
60777701 TGGGCTATGTGGG-CCACA
1 TGGGCTATGTGGGCCCACA
60777719 TGGGC-ATGTGGGCCCACA
1 TGGGCTATGTGGGCCCACA
60777737 TGGGC
1 TGGGC
60777742 CCCCAATATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.15, C:0.24, G:0.41, T:0.20
Consensus pattern (19 bp):
TGGGCTATGTGGGCCCACA
Found at i:60782075 original size:46 final size:45
Alignment explanation
Indices: 60782022--60782195 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
60782012 TTTGGGCATC
*
60782022 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGCT
*** * *
60782068 CGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCAT-CT
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAATGCT
* *
60782116 -GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGCT
* * *
60782161 CGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60782196 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 63 0.59
47 29 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGCT
Found at i:60782175 original size:93 final size:93
Alignment explanation
Indices: 60782016--60782187 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
60782006 AGAATATTTG
* * *
60782016 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCATTGAG
60782081 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
60782109 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCTCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCATTGAG
*
60782174 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
60782188 ACTTATGGGT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:60785165 original size:15 final size:15
Alignment explanation
Indices: 60785126--60785203 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
60785116 GTATCTTGGG
*
60785126 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
60785141 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
60785156 TTTCTTTATT-TGG-
1 TTTCTTTATTCTGGA
*
60785169 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
60785184 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
60785198 TTTCTT
1 TTTCTT
60785204 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
12 1 0.02
13 7 0.13
14 14 0.26
15 29 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.17, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60785192 original size:28 final size:28
Alignment explanation
Indices: 60785117--60785199 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
60785107 CATAGTATCG
* * * *
60785117 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTAT-TTGG-TTTCTC
60785147 TAT-TCTGGATTTCTTTATTTGGTTTCTC
1 TATCT-TGGATTTCTTTATTTGGTTTCTC
*
60785175 TATCTTGGATTTCTTTATTCGGTTT
1 TATCTTGGATTTCTTTATTTGGTTT
60785200 TCTTGTTATC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
28 26 0.57
29 5 0.11
30 15 0.33
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.58
Consensus pattern (28 bp):
TATCTTGGATTTCTTTATTTGGTTTCTC
Found at i:60789534 original size:13 final size:13
Alignment explanation
Indices: 60789516--60789540 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60789506 CACATGACAT
60789516 GTTAATCACACGA
1 GTTAATCACACGA
60789529 GTTAATCACACG
1 GTTAATCACACG
60789541 GACGTGTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (13 bp):
GTTAATCACACGA
Found at i:60793405 original size:26 final size:28
Alignment explanation
Indices: 60793376--60793432 Score: 93
Period size: 26 Copynumber: 2.1 Consensus size: 28
60793366 TTTGATGAAT
60793376 TGACCT-TTTTGCCCTTATGT-GTAAAA
1 TGACCTGTTTTGCCCTTATGTGGTAAAA
60793402 TGA-CTGTTTTGCCCTTATGTGGTAAAA
1 TGACCTGTTTTGCCCTTATGTGGTAAAA
60793429 TGAC
1 TGAC
60793433 TGAAATGCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 2 0.07
26 17 0.61
27 9 0.32
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (28 bp):
TGACCTGTTTTGCCCTTATGTGGTAAAA
Found at i:60793426 original size:27 final size:26
Alignment explanation
Indices: 60793382--60793434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
60793372 GAATTGACCT
60793382 TTTTGCCCTTATGTGTAAAATGACTG
1 TTTTGCCCTTATGTGTAAAATGACTG
60793408 TTTTGCCCTTATGTGGTAAAATGACTG
1 TTTTGCCCTTATGT-GTAAAATGACTG
60793435 AAATGCCCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.42
Consensus pattern (26 bp):
TTTTGCCCTTATGTGTAAAATGACTG
Found at i:60793441 original size:27 final size:26
Alignment explanation
Indices: 60793385--60793442 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
60793375 TTGACCTTTT
***
60793385 TGCCCTTATGTGTAAAATGACTGTTT
1 TGCCCTTATGTGTAAAATGACTGAAA
60793411 TGCCCTTATGTGGTAAAATGACTGAAA
1 TGCCCTTATGT-GTAAAATGACTGAAA
60793438 TGCCC
1 TGCCC
60793443 CTACATGGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
TGCCCTTATGTGTAAAATGACTGAAA
Found at i:60798736 original size:15 final size:14
Alignment explanation
Indices: 60798711--60798740 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
60798701 GAACAAATAG
60798711 AAGATGAAGAATGA
1 AAGATGAAGAATGA
60798725 AAGATGGAAGAATGA
1 AAGAT-GAAGAATGA
60798740 A
1 A
60798741 TTGAGTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.57, C:0.00, G:0.30, T:0.13
Consensus pattern (14 bp):
AAGATGAAGAATGA
Found at i:60801821 original size:23 final size:23
Alignment explanation
Indices: 60801795--60801841 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
60801785 ATGAGTTACT
60801795 TTGTAGTTAAATTTTATGTTATC
1 TTGTAGTTAAATTTTATGTTATC
60801818 TTGTAGTTAAATTTTATGTTATC
1 TTGTAGTTAAATTTTATGTTATC
60801841 T
1 T
60801842 CATTGATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (23 bp):
TTGTAGTTAAATTTTATGTTATC
Found at i:60807556 original size:47 final size:47
Alignment explanation
Indices: 60807490--60807809 Score: 586
Period size: 47 Copynumber: 6.7 Consensus size: 47
60807480 GAAATGATAG
60807490 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60807537 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
60807584 TAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60807631 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
60807678 TAAGGCCTAATGTCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60807725 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
60807774 TAGGGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGA-AAGT
60807810 CCCGAAGGGC
Statistics
Matches: 265, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 220 0.83
49 41 0.15
50 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60807984 original size:37 final size:37
Alignment explanation
Indices: 60807927--60808005 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
60807917 CCAAGCTCTA
* * *
60807927 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
60807964 AAGACCCGATAACT-TCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTAT-GTGTGGAGATTATGTCCGGGT
60808001 AAGAC
1 AAGAC
60808006 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
Found at i:60810544 original size:15 final size:16
Alignment explanation
Indices: 60810526--60810563 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
60810516 AATTAGAAAG
60810526 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
* *
60810541 ATGACAATTTAATTAA
1 ATGAAAAGTTAATTAA
60810557 ATGAAAA
1 ATGAAAA
60810564 AGATAACAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.55, C:0.03, G:0.11, T:0.32
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:60816596 original size:5 final size:5
Alignment explanation
Indices: 60816588--60816612 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
60816578 AAAATAAAAA
60816588 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
60816613 GGTTGGTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:60820334 original size:43 final size:43
Alignment explanation
Indices: 60820283--60820390 Score: 130
Period size: 43 Copynumber: 2.5 Consensus size: 43
60820273 TATCTGAGAT
* **
60820283 ATGGTCTTACATGTTATCACATATTGATGCCAATAG-CCTAG-C
1 ATGGTCTTACATGTAATCACATAACGATGCCAAT-GTCCTAGAC
* *
60820325 TATTGTCTTACATGAAATCACATAACGATGCCAATGTCCTAGAC
1 -ATGGTCTTACATGTAATCACATAACGATGCCAATGTCCTAGAC
*
60820369 ATGGTCTTACACGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
60820391 CTCGGTAATT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.02
43 53 0.96
44 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATAACGATGCCAATGTCCTAGAC
Found at i:60821324 original size:32 final size:32
Alignment explanation
Indices: 60821283--60821343 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
60821273 CGGCTTATAG
*
60821283 CCATCAGTAGCGGTAATTTGATCGGCACAAAT
1 CCATCAGTAGCGGTAATATGATCGGCACAAAT
* *
60821315 CCATCAGTAGCTGTAATATGATTGGCACA
1 CCATCAGTAGCGGTAATATGATCGGCACA
60821344 CAGCCATGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (32 bp):
CCATCAGTAGCGGTAATATGATCGGCACAAAT
Found at i:60821875 original size:27 final size:27
Alignment explanation
Indices: 60821845--60821955 Score: 159
Period size: 27 Copynumber: 4.1 Consensus size: 27
60821835 CTACAAGGGA
*
60821845 ATTTTGGTAATTTTACACTATAGGGGT
1 ATTTCGGTAATTTTACACTATAGGGGT
* *
60821872 ATTTCGATAATTTTACAATATAGGGGT
1 ATTTCGGTAATTTTACACTATAGGGGT
* *
60821899 ATTTTGGTAATTTTACACTACAGGGGT
1 ATTTCGGTAATTTTACACTATAGGGGT
* *
60821926 ATTTCAGTACTTTTACACTATAGGGGT
1 ATTTCGGTAATTTTACACTATAGGGGT
60821953 ATT
1 ATT
60821956 GTGACACCCC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (27 bp):
ATTTCGGTAATTTTACACTATAGGGGT
Found at i:60821903 original size:54 final size:54
Alignment explanation
Indices: 60821845--60821955 Score: 179
Period size: 54 Copynumber: 2.1 Consensus size: 54
60821835 CTACAAGGGA
*
60821845 ATTTTGGTAATTTTACACTATAGGGGTATTTC-GATAATTTTACAATATAGGGGT
1 ATTTTGGTAATTTTACACTACAGGGGTATTTCAG-TAATTTTACAATATAGGGGT
* *
60821899 ATTTTGGTAATTTTACACTACAGGGGTATTTCAGTACTTTTACACTATAGGGGT
1 ATTTTGGTAATTTTACACTACAGGGGTATTTCAGTAATTTTACAATATAGGGGT
60821953 ATT
1 ATT
60821956 GTGACACCCC
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
54 52 0.98
55 1 0.02
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (54 bp):
ATTTTGGTAATTTTACACTACAGGGGTATTTCAGTAATTTTACAATATAGGGGT
Found at i:60824354 original size:47 final size:47
Alignment explanation
Indices: 60824302--60824647 Score: 500
Period size: 47 Copynumber: 7.3 Consensus size: 47
60824292 TGTACAAGTA
* * *
60824302 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
60824349 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
60824398 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
60824445 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
60824492 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
60824539 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
60824586 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
60824633 TATAAATGTGATAAG
1 TATATATGTGATAAG
60824648 TCCCGAAGGG
Statistics
Matches: 280, Mismatches: 14, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 235 0.84
48 3 0.01
49 40 0.14
50 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:60824525 original size:22 final size:22
Alignment explanation
Indices: 60824498--60824619 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
60824488 CATGTGTATG
60824498 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
60824520 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
60824545 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
60824567 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
60824592 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
60824614 TGTGAT
1 TGTGAT
60824620 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:60827310 original size:75 final size:78
Alignment explanation
Indices: 60827220--60827505 Score: 287
Period size: 75 Copynumber: 3.5 Consensus size: 78
60827210 TGATCCGGGA
60827220 CTAAGTCCCGAAGAGCATTCG-GCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT-GTGCT
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
60827283 AG-GATGTTCCGG
66 AGTGATGTTCCGG
*
60827295 CTAAGTCCCGAAGAGCATTCATG-TAGTGATG-ATCACGGGCCCTAAGTCCCGAAGAGCATTTCC
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC-CGGG--CTAAGTCCCGAAGAGCA-TT-C
*
60827358 AATGCTAGTGATGTATCCGGG
61 -GTGCTAGTGATGT-TCC-GG
*
60827379 CTAAGTCCCGGGAAAGAGGCATTTCGTGCTAGTTGA-GTATCCGGGGCTAAGTCTCGAAGACGCA
1 CTAAGTCCC--G-AAGA-GCA-TTCGTGCTAG-TGATGTATCC-GGGCTAAGTCCCGAAGA-GCA
60827443 TTCGTGCTAAGTGATGTATTCCGG
58 TTCGTGCT-AGTGATG--TTCCGG
* * *
60827467 ACTAAGTTTCCGAAGAGCATTTGTGCTAGTGATATATCC
1 -CTAAG-TCCCGAAGAGCATTCGTGCTAGTGATGTATCC
60827506 ATGCTAAACC
Statistics
Matches: 176, Mismatches: 8, Indels: 44
0.77 0.04 0.19
Matches are distributed among these distances:
74 3 0.02
75 32 0.18
76 1 0.01
77 17 0.10
78 2 0.01
81 6 0.03
82 5 0.03
83 3 0.02
84 14 0.08
85 14 0.08
86 4 0.02
87 12 0.07
88 14 0.08
89 28 0.16
90 12 0.07
91 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
AGTGATGTTCCGG
Found at i:60827437 original size:89 final size:80
Alignment explanation
Indices: 60827208--60827498 Score: 294
Period size: 89 Copynumber: 3.5 Consensus size: 80
60827198 AGGTCTCGAC
60827208 GATG-ATCCGGGACTAAGTCCCGAAGAGCATTCG-GCTAGTGATGTATCC-GGGCTAAGTCCCGA
1 GATGTATCCGGG-CTAAGTCCCGAAGAGCATTCGTGCTAGTGA-GTATCCGGGGCTAAGTCCCGA
60827270 AGAGCATT-GTGCTAG-
64 AGAGCATTCGTGCTAGT
* *
60827285 GATGT-TCC-GGCTAAGTCCCGAAGAGCATTCATG-TAGTGA-TGATCACGGGCCCTAAGTCCCG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAGT-ATC-CGGG-GCTAAGTCCCG
*
60827346 AAGAGCATTTCCAATGCTAGT
63 AAGAGCA-TT-C-GTGCTAGT
60827367 GATGTATCCGGGCTAAGTCCCGGGAAAGAGGCATTTCGTGCTAGTTGAGTATCCGGGGCTAAGTC
1 GATGTATCCGGGCTAAGTCCC--G-AAGA-GCA-TTCGTGCTAG-TGAGTATCCGGGGCTAAGTC
*
60827432 TCGAAGACGCATTCGTGCTAAGT
60 CCGAAGA-GCATTCGTGCT-AGT
* * *
60827455 GATGTATTCCGGACTAAGTTTCCGAAGAGCATTTGTGCTAGTGA
1 GATGTA-TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA
60827499 TATATCCATG
Statistics
Matches: 179, Mismatches: 10, Indels: 43
0.77 0.04 0.19
Matches are distributed among these distances:
73 1 0.01
74 3 0.02
75 27 0.15
76 5 0.03
77 24 0.13
78 2 0.01
81 6 0.03
82 5 0.03
83 3 0.02
84 14 0.08
85 9 0.05
86 4 0.02
87 12 0.07
88 14 0.08
89 30 0.17
90 13 0.07
91 6 0.03
92 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAGTATCCGGGGCTAAGTCCCGAAG
AGCATTCGTGCTAGT
Found at i:60827472 original size:43 final size:40
Alignment explanation
Indices: 60827208--60827581 Score: 309
Period size: 43 Copynumber: 9.1 Consensus size: 40
60827198 AGGTCTCGAC
60827208 GATG-ATCCGGGACTAAGTCCCGAAGAGCATTCG-GCTAGT
1 GATGTATCCGGG-CTAAGTCCCGAAGAGCATTCGTGCTAGT
60827247 GATGTATCCGGGCTAAGTCCCGAAGAGCATT-GTGCTAG-
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
60827285 GATGT-TCC-GGCTAAGTCCCGAAGAGCATTCATG-TAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
60827322 GATG-ATCACGGGCCCTAAGTCCCGAAGAGCATTTCCAATGCTAGT
1 GATGTATC-CGGG--CTAAGTCCCGAAGAGCA-TT-C-GTGCTAGT
60827367 GATGTATCCGGGCTAAGTCCCGGGAAAGAGGCATTTCGTGCTAGTT
1 GATGTATCCGGGCTAAGTCCC--G-AAGA-GCA-TTCGTGCTAG-T
*
60827413 GA-GTATCCGGGGCTAAGTCTCGAAGACGCATTCGTGCTAAGT
1 GATGTATCC-GGGCTAAGTCCCGAAGA-GCATTCGTGCT-AGT
* * *
60827455 GATGTATTCCGGACTAAGTTTCCGAAGAGCATTTGTGCTAGT
1 GATGTA-TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGT
* ** ** * * *
60827497 GATATATCCATGCTAAACCCCAAAAATGCCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGA-G-CATTCGTGCTAGT
* * * * *
60827539 GTTATATCCGAGGCTAGGT-CCGAAAGAGCAATCATGCTAGT
1 GATGTATCCG-GGCTAAGTCCCG-AAGAGCATTCGTGCTAGT
60827580 GA
1 GA
60827582 CGTGTATATT
Statistics
Matches: 276, Mismatches: 31, Indels: 54
0.76 0.09 0.15
Matches are distributed among these distances:
36 24 0.09
37 11 0.04
38 7 0.03
39 30 0.11
40 12 0.04
41 36 0.13
42 43 0.16
43 46 0.17
44 14 0.05
45 25 0.09
46 22 0.08
47 6 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:60835322 original size:40 final size:40
Alignment explanation
Indices: 60835278--60835434 Score: 208
Period size: 40 Copynumber: 3.9 Consensus size: 40
60835268 AAGCGAATAT
* * * * *
60835278 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAA
60835318 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* *
60835358 ATCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
*
60835398 ATCCGGGTTAAGTCCCGAAGGCAGTCGTCGCCGAGTT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGT-G-CGAGTT
60835435 GGTCATAGTT
Statistics
Matches: 107, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.93
41 1 0.01
42 6 0.06
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:60837746 original size:47 final size:45
Alignment explanation
Indices: 60837688--60838083 Score: 429
Period size: 47 Copynumber: 8.5 Consensus size: 45
60837678 GATGTACAAG
* * * *
60837688 TATATATGTGATAGGGCCGAGTGGCCAATGTGATG-ATGTAAAGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-CA
*
60837733 TATATATGCGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACA
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
60837780 TGTGTATAGTGATAA-GCCGAATGGCCAATGTGATGAATGTGAACA
1 TATATAT-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
60837825 TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTTGAACA
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG-TGAACA
* * *
60837873 TGTGTCTGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
60837920 TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
60837967 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A
1 T--ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* **
60838013 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTG
1 ---TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAA-CA
* *
60838063 TATAAATGTGATAAGTCCGAA
1 TATATATGTGATAAGGCCGAA
60838084 GGGCAATTGT
Statistics
Matches: 317, Mismatches: 19, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
45 37 0.12
46 15 0.05
47 209 0.66
48 55 0.17
49 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (45 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
Found at i:60838028 original size:94 final size:94
Alignment explanation
Indices: 60837687--60838083 Score: 529
Period size: 94 Copynumber: 4.2 Consensus size: 94
60837677 TGATGTACAA
* * *
60837687 GTATATATGTGATAGGGCCGAGTGGCCAATGTGATG-ATGT-AA-AGTATATATATGCGTGATAA
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATATAT--GTGATAA
*
60837749 GGCCGAGTGGCCAATGTGATGAATGTGAACAT
63 GGCCGAATGGCCAATGTGATGAATGTGAACAT
* * *
60837781 GTGTATA-GTGATAA-GCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGC
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGC
60837844 CGAATGGCCAATGTGATGAATGTTGAACAT
66 CGAATGGCCAATGTGATGAATG-TGAACAT
* * * * *
60837874 GTGTCTGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGC
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGC
60837939 CGAATGGCCAATGTGATGAATGTGAACAT
66 CGAATGGCCAATGTGATGAATGTGAACAT
* *
60837968 GCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGG
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGG
* *
60838032 CCGAATGGCCAATGTGATGGATGTGGAA-GT
65 CCGAATGGCCAATGTGATGAATGT-GAACAT
* *
60838062 GTATAAATGTGATAAGTCCGAA
1 GTATATATGTGATAAGGCCGAA
60838084 GGGCAATTGT
Statistics
Matches: 273, Mismatches: 22, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
92 50 0.18
93 23 0.08
94 125 0.46
95 75 0.27
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (94 bp):
GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGC
CGAATGGCCAATGTGATGAATGTGAACAT
Found at i:60839995 original size:27 final size:27
Alignment explanation
Indices: 60839926--60840131 Score: 252
Period size: 27 Copynumber: 7.7 Consensus size: 27
60839916 GGGTGTTACA
* *
60839926 GGTATTTCAATAATTTTACACTATA-G
1 GGTATTTCAGTAATTTTACACTACAGG
*
60839952 GGTATTTCTGTAATTTTACACTACAGG
1 GGTATTTCAGTAATTTTACACTACAGG
* *
60839979 GGTATTTCAGTACTTTTACACTATAGG
1 GGTATTTCAGTAATTTTACACTACAGG
* * *
60840006 GGTATTTCAATAATTTTACACTATAGT
1 GGTATTTCAGTAATTTTACACTACAGG
* *
60840033 GGTATTTCTGTAATTTTACACCACAGG
1 GGTATTTCAGTAATTTTACACTACAGG
** * *
60840060 GGTATTTTGGTAATTTTACACGACAAG
1 GGTATTTCAGTAATTTTACACTACAGG
60840087 GGTATTTCAGTAATTTTACACTACAGG
1 GGTATTTCAGTAATTTTACACTACAGG
* **
60840114 AGTATTTTGGTAATTTTA
1 GGTATTTCAGTAATTTTA
60840132 TAAACTAGGG
Statistics
Matches: 154, Mismatches: 25, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 22 0.14
27 132 0.86
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACACTACAGG
Found at i:60840142 original size:81 final size:80
Alignment explanation
Indices: 60839926--60840160 Score: 312
Period size: 81 Copynumber: 2.9 Consensus size: 80
60839916 GGGTGTTACA
* **
60839926 GGTATTTCAATAATTTTACACTATAGGGTATTTCTGTAATTTTACACTACAGGGGTATTTCAGTA
1 GGTATTTCAATAATTTTACACTATAGGGTATTTCTGTAATTTTACACAACAGGGGTATTTTGGTA
* * * *
60839991 CTTTTACACTATAGG
66 ATTTTACACGACAAG
*
60840006 GGTATTTCAATAATTTTACACTATAGTGGTATTTCTGTAATTTTACACCACAGGGGTATTTTGGT
1 GGTATTTCAATAATTTTACACTATAG-GGTATTTCTGTAATTTTACACAACAGGGGTATTTTGGT
60840071 AATTTTACACGACAAG
65 AATTTTACACGACAAG
* * *
60840087 GGTATTTCAGTAATTTTACACTACAGGAGTATTT-TGGTAATTTTATA-AACTAGGGGTATTTTG
1 GGTATTTCAATAATTTTACACTATAGG-GTATTTCT-GTAATTTTACACAAC-AGGGGTATTTTG
*
60840150 ATAATTTTACA
63 GTAATTTTACA
60840161 AATCGGGGTC
Statistics
Matches: 139, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
80 30 0.22
81 109 0.78
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (80 bp):
GGTATTTCAATAATTTTACACTATAGGGTATTTCTGTAATTTTACACAACAGGGGTATTTTGGTA
ATTTTACACGACAAG
Found at i:60840145 original size:27 final size:27
Alignment explanation
Indices: 60839936--60840160 Score: 188
Period size: 27 Copynumber: 8.4 Consensus size: 27
60839926 GGTATTTCAA
* *
60839936 TAATTTTACACTATA-GGGTATTTCT-G
1 TAATTTTACACAACAGGGGTATTT-TGG
* **
60839962 TAATTTTACACTACAGGGGTATTTCAG
1 TAATTTTACACAACAGGGGTATTTTGG
* * * ***
60839989 TACTTTTACACTATAGGGGTATTTCAA
1 TAATTTTACACAACAGGGGTATTTTGG
* * *
60840016 TAATTTTACACTATAGTGGTATTTCT-G
1 TAATTTTACACAACAGGGGTATTT-TGG
*
60840043 TAATTTTACACCACAGGGGTATTTTGG
1 TAATTTTACACAACAGGGGTATTTTGG
* * **
60840070 TAATTTTACACGACAAGGGTATTTCAG
1 TAATTTTACACAACAGGGGTATTTTGG
* *
60840097 TAATTTTACACTACAGGAGTATTTTGG
1 TAATTTTACACAACAGGGGTATTTTGG
* *
60840124 TAATTTTATA-AACTAGGGGTATTTTGA
1 TAATTTTACACAAC-AGGGGTATTTTGG
60840151 TAATTTTACA
1 TAATTTTACA
60840161 AATCGGGGTC
Statistics
Matches: 168, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
26 17 0.10
27 151 0.90
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (27 bp):
TAATTTTACACAACAGGGGTATTTTGG
Found at i:60840155 original size:54 final size:54
Alignment explanation
Indices: 60839926--60840160 Score: 223
Period size: 54 Copynumber: 4.4 Consensus size: 54
60839916 GGGTGTTACA
*
60839926 GGTA-TTTCAATAATTTTACACTATA-GGGTATTTCT-GTAATTTTACACTACAGG
1 GGTATTTTC-ATAATTTTACACTACAGGGGTATTT-TGGTAATTTTACACTACAGG
* * *** * *
60839979 GGTA-TTTCAGTACTTTTACACTATAGGGGTATTTCAATAATTTTACACTATAGT
1 GGTATTTTCA-TAATTTTACACTACAGGGGTATTTTGGTAATTTTACACTACAGG
* * * *
60840033 GGTA-TTTCTGTAATTTTACACCACAGGGGTATTTTGGTAATTTTACACGACAAG
1 GGTATTTTC-ATAATTTTACACTACAGGGGTATTTTGGTAATTTTACACTACAGG
* * *
60840087 GGTA-TTTCAGTAATTTTACACTACAGGAGTATTTTGGTAATTTTATA-AACTAGG
1 GGTATTTTCA-TAATTTTACACTACAGGGGTATTTTGGTAATTTTACACTAC-AGG
*
60840141 GGTATTTTGATAATTTTACA
1 GGTATTTTCATAATTTTACA
60840161 AATCGGGGTC
Statistics
Matches: 152, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
52 1 0.01
53 24 0.16
54 123 0.81
55 4 0.03
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (54 bp):
GGTATTTTCATAATTTTACACTACAGGGGTATTTTGGTAATTTTACACTACAGG
Found at i:60843287 original size:32 final size:32
Alignment explanation
Indices: 60843246--60843315 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
60843236 CATGGCTTAC
* *
60843246 AGCCATCAGTAGTTGTAATTTGATCAACACAA
1 AGCCATCAGTAGCTGTAATATGATCAACACAA
* *
60843278 AGCCATCAGTAGCTGTAATATGATCAGCACAC
1 AGCCATCAGTAGCTGTAATATGATCAACACAA
60843310 AGCCAT
1 AGCCAT
60843316 GGGTAAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (32 bp):
AGCCATCAGTAGCTGTAATATGATCAACACAA
Found at i:60843831 original size:27 final size:27
Alignment explanation
Indices: 60843809--60844105 Score: 285
Period size: 27 Copynumber: 11.0 Consensus size: 27
60843799 TCATTTTTCC
*
60843809 CTACATGGGTATTTCGGTAATTTTACA
1 CTACATGGGTATTTTGGTAATTTTACA
* *
60843836 CTATAGGGGTATTTTGGTAATTTTACA
1 CTACATGGGTATTTTGGTAATTTTACA
***
60843863 CTACATGGGTATTTCAATAATTTTACA
1 CTACATGGGTATTTTGGTAATTTTACA
* * *
60843890 CTACATGGATATTTTAGTATTTTTACA
1 CTACATGGGTATTTTGGTAATTTTACA
* *
60843917 CTATAAT-GGTATTTTAGTAATTTTACA
1 CTA-CATGGGTATTTTGGTAATTTTACA
* *
60843944 ATACAGGGGTATTTTGGTAATTTTACA
1 CTACATGGGTATTTTGGTAATTTTACA
* * *
60843971 CTATAAGGGTATTTTAGTAATTTTACA
1 CTACATGGGTATTTTGGTAATTTTACA
* * * * * *
60843998 CTATAGGGGCATCTCGATAATTTTACA
1 CTACATGGGTATTTTGGTAATTTTACA
*
60844025 CTACAAGGGTATTTTGGTAATTTTACA
1 CTACATGGGTATTTTGGTAATTTTACA
* **
60844052 -AATCA-GGCGTATTTCAGTAATTTTACA
1 CTA-CATGG-GTATTTTGGTAATTTTACA
* * *
60844079 CTATAGGGGTATTTTAGTAATTTTACA
1 CTACATGGGTATTTTGGTAATTTTACA
60844106 AATCGGGGTC
Statistics
Matches: 223, Mismatches: 41, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.02
27 214 0.96
28 5 0.02
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.42
Consensus pattern (27 bp):
CTACATGGGTATTTTGGTAATTTTACA
Found at i:60843867 original size:54 final size:54
Alignment explanation
Indices: 60843809--60844105 Score: 328
Period size: 54 Copynumber: 5.5 Consensus size: 54
60843799 TCATTTTTCC
**
60843809 CTACATGGGTATTTCGGTAATTTTACACTATAGGGGTATTTTGGTAATTTTACA
1 CTACATGGGTATTTTAGTAATTTTACACTATAGGGGTATTTTGGTAATTTTACA
* * * * * * *
60843863 CTACATGGGTATTTCAATAATTTTACACTACATGGATATTTTAGTATTTTTACA
1 CTACATGGGTATTTTAGTAATTTTACACTATAGGGGTATTTTGGTAATTTTACA
* * *
60843917 CTATAAT-GGTATTTTAGTAATTTTACAATACAGGGGTATTTTGGTAATTTTACA
1 CTA-CATGGGTATTTTAGTAATTTTACACTATAGGGGTATTTTGGTAATTTTACA
* * * * * *
60843971 CTATAAGGGTATTTTAGTAATTTTACACTATAGGGGCATCTCGATAATTTTACA
1 CTACATGGGTATTTTAGTAATTTTACACTATAGGGGTATTTTGGTAATTTTACA
* * * * **
60844025 CTACAAGGGTATTTTGGTAATTTTACA-AATCAGGCGTATTTCAGTAATTTTACA
1 CTACATGGGTATTTTAGTAATTTTACACTAT-AGGGGTATTTTGGTAATTTTACA
* *
60844079 CTATAGGGGTATTTTAGTAATTTTACA
1 CTACATGGGTATTTTAGTAATTTTACA
60844106 AATCGGGGTC
Statistics
Matches: 206, Mismatches: 34, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
53 3 0.01
54 201 0.98
55 2 0.01
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.42
Consensus pattern (54 bp):
CTACATGGGTATTTTAGTAATTTTACACTATAGGGGTATTTTGGTAATTTTACA
Found at i:60843914 original size:81 final size:81
Alignment explanation
Indices: 60843809--60844105 Score: 366
Period size: 81 Copynumber: 3.7 Consensus size: 81
60843799 TCATTTTTCC
* * *
60843809 CTACATGGGTATTTCGGTAATTTTACACTATAGGGGTATTTTGGTAATTTTACACTACATGGGTA
1 CTACATGGGTATTTCAGTAATTTTACACTATAGGGGTATTTTAGTAATTTTACACTACAAGGGTA
***
60843874 TTTCAATAATTTTACA
66 TTTTGGTAATTTTACA
* * * ** * *
60843890 CTACATGGATATTTTAGTATTTTTACACTATAATGGTATTTTAGTAATTTTACAATACAGGGGTA
1 CTACATGGGTATTTCAGTAATTTTACACTATAGGGGTATTTTAGTAATTTTACACTACAAGGGTA
60843955 TTTTGGTAATTTTACA
66 TTTTGGTAATTTTACA
* * * * * *
60843971 CTATAAGGGTATTTTAGTAATTTTACACTATAGGGGCA-TCTCGATAATTTTACACTACAAGGGT
1 CTACATGGGTATTTCAGTAATTTTACACTATAGGGGTATTTTAG-TAATTTTACACTACAAGGGT
60844035 ATTTTGGTAATTTTACA
65 ATTTTGGTAATTTTACA
*
60844052 -AATCA-GGCGTATTTCAGTAATTTTACACTATAGGGGTATTTTAGTAATTTTACA
1 CTA-CATGG-GTATTTCAGTAATTTTACACTATAGGGGTATTTTAGTAATTTTACA
60844106 AATCGGGGTC
Statistics
Matches: 183, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
80 6 0.03
81 174 0.95
82 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.42
Consensus pattern (81 bp):
CTACATGGGTATTTCAGTAATTTTACACTATAGGGGTATTTTAGTAATTTTACACTACAAGGGTA
TTTTGGTAATTTTACA
Found at i:60850595 original size:18 final size:20
Alignment explanation
Indices: 60850558--60850599 Score: 70
Period size: 18 Copynumber: 2.2 Consensus size: 20
60850548 GTTGTTTTTC
60850558 AAAAAGGAGAGAAAATTAAA
1 AAAAAGGAGAGAAAATTAAA
60850578 AAAAAGGA-AGAAAA-TAAA
1 AAAAAGGAGAGAAAATTAAA
60850596 AAAA
1 AAAA
60850600 TGAGAATATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 8 0.36
19 6 0.27
20 8 0.36
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (20 bp):
AAAAAGGAGAGAAAATTAAA
Found at i:60858301 original size:47 final size:45
Alignment explanation
Indices: 60858110--60858464 Score: 233
Period size: 47 Copynumber: 7.6 Consensus size: 45
60858100 TTGCGAATGC
* * *
60858110 CATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCT-C-TGTGCTGATG
* * *
60858159 CATGTCCCAGACATGTCTTACACTAGCA-CAACTCT-TAGCTGATA
1 CATGTCCCAGACATGTCTTACACTGGCATCATCTCTGT-GCTGATG
* * * *
60858203 CGTGTCCCAGACACGTCTTACACTGGC-T-ATCTCGGTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCATCATCTC--T-G-TGCTGATG
* *
60858250 CATGTCCCAGATATGTCTTACACTGGCAGTCATTTCTGTGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCA-TCATCTCTGTGCTGATG
* * *
60858296 CCATGTCCTAGACATGGTCTTACACTGGCTATCATAGTATG-GCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGC-ATCAT-CTCTGTGCTGATG
* * * **
60858344 CATGTCCCAAACATGTCTTACACTAGC--CCTCGTCTGGATATTGATG
1 CATGTCCCAGACATGTCTTACACTGGCATCATC-TCT-G-TGCTGATG
* * * *
60858390 CCATGTCCCAGACATGGTCTTACACCGGC-TC-TCATAATGTGGCCGAGG
1 -CATGTCCCAGACAT-GTCTTACACTGGCATCATC-T-CTGT-GCTGATG
60858438 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
60858465 GCACAAACCA
Statistics
Matches: 242, Mismatches: 41, Indels: 49
0.73 0.12 0.15
Matches are distributed among these distances:
43 9 0.04
44 31 0.13
45 2 0.01
46 38 0.16
47 82 0.34
48 55 0.23
49 21 0.09
50 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCATCATCTCTGTGCTGATG
Found at i:60858351 original size:94 final size:92
Alignment explanation
Indices: 60858106--60858461 Score: 341
Period size: 94 Copynumber: 3.8 Consensus size: 92
60858096 TATATTGCGA
* * *
60858106 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGTCCCAGA
60858170 CATGTCTTACACTAGCA-CAACTCT-TAGCTG
63 CATGTCTTACACTAGCATC-ACTCTGT-GCTG
* * * *
60858200 AT-ACGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCGGTCGA-GGCCGATGCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGTCCCAGA
* * *
60858261 TATGTCTTACACTGGCAGTCATTTCTGTGCTG
63 CATGTCTTACACTAGCA-TCA-CTCTGTGCTG
* * *
60858293 ATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAAACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACAT
* * **
60858358 GTCTTACACTAGCCCTC-GTCTGGATATTG
66 GTCTTACACTAG-CATCACTCT-G-TGCTG
* * * * *
60858387 ATGCCATGTCCCAGACATGGTCTTACACCGGCTCTCATAATGTGGCCGAGGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACAT
60858452 GTCTTACACT
66 GTCTTACACT
60858462 GGCGCACAAA
Statistics
Matches: 217, Mismatches: 30, Indels: 30
0.78 0.11 0.11
Matches are distributed among these distances:
91 33 0.15
92 21 0.10
93 25 0.12
94 116 0.53
95 21 0.10
96 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (92 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCATCACTCTGTGCTG
Found at i:60858450 original size:141 final size:139
Alignment explanation
Indices: 60858106--60858464 Score: 354
Period size: 141 Copynumber: 2.6 Consensus size: 139
60858096 TATATTGCGA
* * *
60858106 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTGTGCTGAGGCATGTCCCAGAC
* * * * * *
60858171 ATGTCTTACACTAGCACAACTCTTAGCTGATACGTGTCCCAGACACGTCTTACACTGGCTATCTC
65 ATGTCTTACACTGGCACAACTCATAGCTGATACATGTCCCAAACACGTCTTACACTAGC-ACCTC
*
60858236 GGTCGAGGCCG
129 GGTCGAGACCG
* ** * * * *
60858247 ATG-CATGTCCCAGATAT-GTCTTACACTGGCAGTCAT-TTCTGTGCTGATGCCATGTCCTAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGTGCTGA-GGCATGTCCCAGAC
* * * *
60858309 ATGGTCTTACACTGGCTATCATAGT-ATGGCTGATGCATGTCCCAAACATGTCTTACACTAGC-C
65 AT-GTCTTACACTGGC-A-CA-ACTCATAGCTGATACATGTCCCAAACACGTCTTACACTAGCAC
* **
60858372 CTC-GTCTGGATATTG
126 CTCGGTC--GAGACCG
* *
60858387 ATGCCATGTCCCAGACATGGTCTTACACCGGCTCTCATAATGTG-GCCGAGGCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGTGCTGAGGCATGTCCCAGACA
60858451 TGTCTTACACTGGC
66 TGTCTTACACTGGC
60858465 GCACAAACCA
Statistics
Matches: 175, Mismatches: 33, Indels: 21
0.76 0.14 0.09
Matches are distributed among these distances:
137 7 0.04
138 16 0.09
139 32 0.18
140 33 0.19
141 62 0.35
142 22 0.13
143 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (139 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGTGCTGAGGCATGTCCCAGACA
TGTCTTACACTGGCACAACTCATAGCTGATACATGTCCCAAACACGTCTTACACTAGCACCTCGG
TCGAGACCG
Found at i:60864321 original size:23 final size:25
Alignment explanation
Indices: 60864295--60864357 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
60864285 AGCTTGTCAA
* *
60864295 AGCTTACTGT-TTCAGCTCAATA-G
1 AGCTTACTGTCATCAGCTCAAGAGG
*
60864318 AGCTTATTGTCCATCAGCTCAAGAGG
1 AGCTTACTGT-CATCAGCTCAAGAGG
60864344 AGCTTACTGATCAT
1 AGCTTACTG-TCAT
60864358 GGCTCAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
23 9 0.28
25 10 0.31
26 12 0.38
27 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (25 bp):
AGCTTACTGTCATCAGCTCAAGAGG
Found at i:60865742 original size:8 final size:8
Alignment explanation
Indices: 60865725--60865755 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
60865715 ATGATATTTG
60865725 TGTATGAA
1 TGTATGAA
*
60865733 TGTATAAA
1 TGTATGAA
60865741 TGTATGAA
1 TGTATGAA
60865749 TGTATGA
1 TGTATGA
60865756 TATTTGGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.23, T:0.39
Consensus pattern (8 bp):
TGTATGAA
Found at i:60870328 original size:28 final size:29
Alignment explanation
Indices: 60870241--60870328 Score: 133
Period size: 29 Copynumber: 3.1 Consensus size: 29
60870231 TGAGCATGAC
60870241 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
* *
60870270 TATAAATATGATTTGGGCCTAATGGGTCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
**
60870299 TATAAATGTGA-TTGAACCTAATGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
60870327 TA
1 TA
60870329 ACAAGTATGT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 16 0.30
29 37 0.70
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (29 bp):
TATAAATGTGATTTGGGCCTAATGGGCCA
Found at i:60877028 original size:47 final size:45
Alignment explanation
Indices: 60876914--60877087 Score: 131
Period size: 46 Copynumber: 3.8 Consensus size: 45
60876904 ACATCTTGTA
* * * ** *
60876914 GCCGATGCAAGTCCTAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CAT-AAGTG
* * *
60876960 GTCAATGCATGTCCCATACATGTCTTACACTAGCTCTTGTC-TCAA-T-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC---TCAT-AAGTG
* *
60877006 GCCGATGCCATGTCCCAGACATGGTCTTTCACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAA-GTG
*
60877054 GCCGATGCATATCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
60877088 GCACAAATGA
Statistics
Matches: 101, Mismatches: 17, Indels: 20
0.73 0.12 0.14
Matches are distributed among these distances:
45 4 0.04
46 46 0.46
47 27 0.27
48 22 0.22
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTG
Found at i:60877039 original size:94 final size:92
Alignment explanation
Indices: 60876914--60877087 Score: 217
Period size: 94 Copynumber: 1.9 Consensus size: 92
60876904 ACATCTTGTA
* * * * *
60876914 GCCGATGCAAGTCCTAGACATGTCTTACACTGGCT-TACAT-CTCGAGGTCAATGCATGTCCCAT
1 GCCGATGCAAGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCAATGCATATCCCAG
60876977 ACATGTCTTACACTAGCTCTTGTCTCAAT
64 ACATGTCTTACACTAGCTCTTGTCTCAAT
* * * *
60877006 GCCGATGCCATGTCCCAGACATGGTCTTTCACTGGCTCTCATAATGTGGCCGATGCATATCCCAG
1 GCCGATG-CAAGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCAATGCATATCCCAG
60877071 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
60877088 GCACAAATGA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 48 0.70
95 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
GCCGATGCAAGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCAATGCATATCCCAGAC
ATGTCTTACACTAGCTCTTGTCTCAAT
Found at i:60882068 original size:49 final size:49
Alignment explanation
Indices: 60881847--60882530 Score: 1103
Period size: 47 Copynumber: 14.3 Consensus size: 49
60881837 CCCTTCGGGA
* * * *
60881847 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60881894 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
60881941 CTCATCAC--ATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60881988 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60882035 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60882084 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60882133 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60882182 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60882229 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60882276 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60882325 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60882372 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60882421 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60882468 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60882517 CTTATCACATATAT
1 CTTATCACATATAT
60882531 TATCATGTAT
Statistics
Matches: 601, Mismatches: 26, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 315 0.52
49 285 0.47
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60882081 original size:96 final size:95
Alignment explanation
Indices: 60881847--60882530 Score: 1113
Period size: 96 Copynumber: 7.1 Consensus size: 95
60881837 CCCTTCGGGA
* * * * * * *
60881847 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
60881911 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* * *
60881941 CTCATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
60882005 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
60882035 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
*
60882100 ACACTTTCACATTCATCACATTGGCCATTAGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60882133 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
60882197 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
60882229 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
60882294 ACTTTCACATTCATCACATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
60882325 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
60882390 ACTTTCACATTCATCACATCGGCCATTCGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
60882421 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
60882486 ACTTTCACATTCATCACATTGGCCATTCGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
60882517 CTTATCACATATAT
1 CTTATCACATATAT
60882531 TATCATGTAT
Statistics
Matches: 559, Mismatches: 25, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
94 136 0.24
96 330 0.59
98 93 0.17
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60888028 original size:28 final size:29
Alignment explanation
Indices: 60887979--60888033 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
60887969 ATAGGGGATT
* *
60887979 TCACACGGTCTGGCACACGCCCATGTCCC
1 TCACACGGCCTCGCACACGCCCATGTCCC
*
60888008 TCACACGGCCTCG-ACACGCCCGTGTC
1 TCACACGGCCTCGCACACGCCCATGTC
60888034 TCAGCCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.16, C:0.45, G:0.22, T:0.16
Consensus pattern (29 bp):
TCACACGGCCTCGCACACGCCCATGTCCC
Found at i:60891823 original size:47 final size:47
Alignment explanation
Indices: 60891751--60892062 Score: 230
Period size: 46 Copynumber: 6.7 Consensus size: 47
60891741 GGTATGATGT
* * * *
60891751 CGATCCCATGTCCCAGACATAGTCTTACACTGGCTCACATGTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGC
* * **
60891798 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCACATAT-TTGTCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCACATCTCAAG--C
* * * **
60891848 CGATGCCATGTCCCAAACATGGTCTCACACT-G-ACACATCTTGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATC-TCAAGC
* * * *
60891894 CGATG-CATGTTCTAGACAT-GTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AAGC
* * * *
60891940 CGATG-CATGTCCCATACAT-GTCTTACACTAGCTCTCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA-GC
* * * * *
60891986 CGATGTCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-ATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCA-AGC
*
60892034 TGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
60892063 AGCGCACAAA
Statistics
Matches: 214, Mismatches: 37, Indels: 29
0.76 0.13 0.10
Matches are distributed among these distances:
44 9 0.04
45 14 0.07
46 69 0.32
47 57 0.27
48 27 0.13
49 10 0.05
50 28 0.13
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGC
Found at i:60892011 original size:94 final size:92
Alignment explanation
Indices: 60891757--60892065 Score: 247
Period size: 94 Copynumber: 3.3 Consensus size: 92
60891747 ATGTCGATCC
* * * * * * *
60891757 CATGTCCCAGACATAGTCTTACACTGGCTCACATGTCAA-GTCGATGCCATGTCCTAGACATGGT
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATG-CATGTCCCAAACAT-GT
* * *
60891821 CTTACACTGGCTCTCACATATTTGTCCCGATG
63 CTTACACTGGCTCTCATA-ATATG-GCCGATG
* * * ** * * *
60891853 CCATGTCCCAAACATGGTCTCACACT-GACACATC-T-TGTA-GCCGATGCATGTTCTAGACATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTC-TCGTCTCAATGCCGATGCATGTCCCAAACATG
*
60891914 TCTTACACTGGCT-TACAT-CTCGA-GGCCGATG
62 TCTTACACTGGCTCT-CATAAT--ATGGCCGATG
*
60891945 CATGTCCCATACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGTCATGTCCCAAACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATG-CATGTCCCAAACAT-GTC
*
60892010 TTACACTGGCTCTCATAATATGGCTGATG
64 TTACACTGGCTCTCATAATATGGCCGATG
60892039 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
60892066 GCACAAATAA
Statistics
Matches: 174, Mismatches: 24, Indels: 31
0.76 0.10 0.14
Matches are distributed among these distances:
89 2 0.01
90 12 0.07
91 16 0.09
92 14 0.08
93 14 0.08
94 66 0.38
95 15 0.09
96 9 0.05
97 25 0.14
98 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCATGTCCCAAACATGTCTT
ACACTGGCTCTCATAATATGGCCGATG
Found at i:60903606 original size:22 final size:22
Alignment explanation
Indices: 60903581--60903630 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
60903571 CCAATCCAAA
60903581 CATTCAAAATAGACAAATT-CAT
1 CATTCAAAATAGAC-AATTCCAT
60903603 CATTCAAAATAGACAATTCCAT
1 CATTCAAAATAGACAATTCCAT
60903625 CATTCA
1 CATTCA
60903631 TCATGGCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (22 bp):
CATTCAAAATAGACAATTCCAT
Found at i:60905088 original size:20 final size:20
Alignment explanation
Indices: 60905059--60905103 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
60905049 AGCACATGTA
*
60905059 TTCATAAAATTTCATAATTT
1 TTCATAAAATTTCATAACTT
* *
60905079 TTCATCAAATTTTATAACTT
1 TTCATAAAATTTCATAACTT
60905099 TTCAT
1 TTCAT
60905104 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTCATAACTT
Found at i:60906488 original size:23 final size:24
Alignment explanation
Indices: 60906449--60906493 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
60906439 AAAAAAAATC
60906449 TGTTATTTGTTTTTGTTATTTTAA
1 TGTTATTTGTTTTTGTTATTTTAA
*
60906473 TGTTATTT-TTTTTGTTCTTTT
1 TGTTATTTGTTTTTGTTATTTT
60906494 CTCCTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.76
Consensus pattern (24 bp):
TGTTATTTGTTTTTGTTATTTTAA
Found at i:60907378 original size:29 final size:29
Alignment explanation
Indices: 60907316--60907376 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
60907306 AAAATTATTA
60907316 TTTTAGAATATTTTTAAAATTTTAACATT
1 TTTTAGAATATTTTTAAAATTTTAACATT
* *
60907345 TTTTA-AATATTCTTTAGAATTTTTA-ATT
1 TTTTAGAATATT-TTTAAAATTTTAACATT
60907373 TTTT
1 TTTT
60907377 TATTTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (29 bp):
TTTTAGAATATTTTTAAAATTTTAACATT
Found at i:60911273 original size:6 final size:7
Alignment explanation
Indices: 60911247--60911276 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
60911237 TAAATATAAT
60911247 TTTTATA
1 TTTTATA
60911254 TTTTATA
1 TTTTATA
60911261 TTTTATA
1 TTTTATA
60911268 TTTATATA
1 TTT-TATA
60911276 T
1 T
60911277 AAATATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.77
8 5 0.23
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTTATA
Found at i:60911437 original size:6 final size:6
Alignment explanation
Indices: 60911426--60911465 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
60911416 TCGATTGGTT
60911426 TTTTTG TTTTTG TTTTTG --TTT- TTTTTG TTTTTG TTTTTG T
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG T
60911466 GATTGGAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 3 0.10
5 3 0.10
6 25 0.81
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:60911442 original size:15 final size:15
Alignment explanation
Indices: 60911423--60911463 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
60911413 TATTCGATTG
*
60911423 GTTTTT-TTGTTTTT
1 GTTTTTGTTTTTTTT
60911437 GTTTTTGTTTTTTTT
1 GTTTTTGTTTTTTTT
60911452 GTTTTTGTTTTT
1 GTTTTTGTTTTT
60911464 GTGATTGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (15 bp):
GTTTTTGTTTTTTTT
Found at i:60911450 original size:21 final size:21
Alignment explanation
Indices: 60911424--60911465 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
60911414 ATTCGATTGG
60911424 TTTTTTTGTTTTTGTTTTTGT
1 TTTTTTTGTTTTTGTTTTTGT
60911445 TTTTTTTGTTTTTGTTTTTGT
1 TTTTTTTGTTTTTGTTTTTGT
60911466 GATTGGAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (21 bp):
TTTTTTTGTTTTTGTTTTTGT
Found at i:60912301 original size:40 final size:40
Alignment explanation
Indices: 60912256--60912331 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
60912246 ACACACCATG
* *
60912256 TGGGGATAAAATCGACCCACCCATCCCTATACACCAAATA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCAAATA
*
60912296 TGGGGATAAAATCGACCCATCCAACCCTACACACCA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCA
60912332 TAAAGTACCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.37, C:0.34, G:0.13, T:0.16
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCAACCCTACACACCAAATA
Found at i:60938502 original size:29 final size:29
Alignment explanation
Indices: 60938460--60938584 Score: 207
Period size: 29 Copynumber: 4.3 Consensus size: 29
60938450 GAAAGCATGA
*
60938460 ATATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
60938489 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
60938518 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
60938547 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
60938575 ATATGCATGT
1 ATATGAATGT
60938585 ATGTAAACTT
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
28 23 0.25
29 68 0.75
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:60948548 original size:49 final size:50
Alignment explanation
Indices: 60948308--60948540 Score: 272
Period size: 49 Copynumber: 4.7 Consensus size: 50
60948298 ATCTATTGTG
* * *
60948308 AGGTCACGTATGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
60948358 -GGTCTCATGTGTAGTAATAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * **
60948408 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
60948458 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
60948508 -GCTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
60948541 TGCGTACCAA
Statistics
Matches: 152, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
49 68 0.45
50 47 0.31
51 37 0.24
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Done.