Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 197 of 325
Found at i:61909763 original size:18 final size:18
Alignment explanation
Indices: 61909740--61909782 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
61909730 GTGTTTTTTC
61909740 GAAAACCATGTTTCCATT
1 GAAAACCATGTTTCCATT
*
61909758 GAAAACCATGTTTTCATT
1 GAAAACCATGTTTCCATT
*
61909776 AAAAACC
1 GAAAACC
61909783 CTTCTTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (18 bp):
GAAAACCATGTTTCCATT
Found at i:61913958 original size:27 final size:27
Alignment explanation
Indices: 61913928--61914033 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
61913918 ATGATCATTT
61913928 TACCCTACAAGGGTATTTCGATAATCC
1 TACCCTACAAGGGTATTTCGATAATCC
* *
61913955 TACCCTAC-AGGAGTATTTCGGTAATCT
1 TACCCTACAAGG-GTATTTCGATAATCC
* * * *
61913982 TACCCTATAGGGGTATTTTGGTAATCC
1 TACCCTACAAGGGTATTTCGATAATCC
*
61914009 TACCCTATAAGGGTATTTCGATAAT
1 TACCCTACAAGGGTATTTCGATAAT
61914034 TTTACAACCC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.04
27 63 0.93
28 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGATAATCC
Found at i:61914060 original size:54 final size:52
Alignment explanation
Indices: 61913927--61914060 Score: 119
Period size: 54 Copynumber: 2.5 Consensus size: 52
61913917 AATGATCATT
* * *
61913927 TTACCCTACAAGGGTATTTCGATAATCCTACCCTACAGGAGTATTTCGGTAATC
1 TTACCCTA-GAGGGTATTTCG-TAATCCTACCCTAAAGGAGTATTTCGATAATC
* * *
61913981 TTACCCTATAGGGGTATTTTGGTAATCCTACCCTATAAGG-GTATTTCGATAATT
1 TTACCCTAGA-GGGTA-TTTCGTAATCCTACCCTA-AAGGAGTATTTCGATAATC
*
61914035 TTACAACC-CGAGGGTATTTCAGTAAT
1 TTAC--CCTAGAGGGTATTTC-GTAAT
61914061 TTTACAAATC
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
53 4 0.06
54 52 0.79
55 8 0.12
56 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (52 bp):
TTACCCTAGAGGGTATTTCGTAATCCTACCCTAAAGGAGTATTTCGATAATC
Found at i:61927334 original size:29 final size:29
Alignment explanation
Indices: 61927300--61927373 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
61927290 TAATCAACCG
*
61927300 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
61927329 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
61927358 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
61927374 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:61930322 original size:49 final size:50
Alignment explanation
Indices: 61930248--61930485 Score: 237
Period size: 49 Copynumber: 4.8 Consensus size: 50
61930238 TGAGGTCACG
* * *
61930248 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACTGGATAATT-GGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTAGGTTACA
* *** * * * *
61930297 TGTGTAGTACTAAGTGCAGGTTACTATACATACCCGATAACTTCGATTACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TTAGGTTACA
* *** ** * *
61930348 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTAGGTTACA
* *
61930398 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTAGGTTACA
* * *
61930447 TGTGTAGTACTAAGTGCAGACTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATA
61930486 GCTTTGGCTA
Statistics
Matches: 152, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
49 72 0.47
50 46 0.30
51 34 0.22
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTAGGTTACA
Found at i:61935555 original size:49 final size:49
Alignment explanation
Indices: 61935475--61935669 Score: 219
Period size: 49 Copynumber: 3.9 Consensus size: 49
61935465 TCTATTGTGA
* * *
61935475 GGTCACATGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATAATT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
61935524 GGTCGCAAGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGATAACTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
** * * * *
61935574 CAATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
61935624 GGTCGCATGTGTAGTACTAAGTGCAGACTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
61935670 GCTTTGGCTA
Statistics
Matches: 117, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 76 0.65
50 4 0.03
51 37 0.32
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:61935655 original size:100 final size:100
Alignment explanation
Indices: 61935477--61935669 Score: 305
Period size: 100 Copynumber: 1.9 Consensus size: 100
61935467 TATTGTGAGG
* *
61935477 TCACATGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATAATTGGTCGCAAGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCAAGTGTAGTACT
* *
61935542 AAGTACAGGCTACTATGCGTACCCGATAACTTCAA
66 AAGTACAGACTACTATGCGTACCAGATAACTTCAA
* * * *
61935577 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCAAGTGTAGTACT
*
61935642 AAGTGCAGACTACTATGCGTACCAGATA
66 AAGTACAGACTACTATGCGTACCAGATA
61935670 GCTTTGGCTA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCAAGTGTAGTACT
AAGTACAGACTACTATGCGTACCAGATAACTTCAA
Found at i:61940058 original size:27 final size:27
Alignment explanation
Indices: 61940027--61940079 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
61940017 CATACATCGT
61940027 ATAGGGGCATAACAGTCATTTTATCAC
1 ATAGGGGCATAACAGTCATTTTATCAC
*
61940054 ATAGGGGCATAATAGTCATTTTATCA
1 ATAGGGGCATAACAGTCATTTTATCA
61940080 ATTAGAGGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (27 bp):
ATAGGGGCATAACAGTCATTTTATCAC
Found at i:61952354 original size:8 final size:8
Alignment explanation
Indices: 61952341--61952367 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
61952331 GTCAAAATAT
61952341 TTATTTTA
1 TTATTTTA
61952349 TTATTTTA
1 TTATTTTA
61952357 TTATTTTA
1 TTATTTTA
61952365 TTA
1 TTA
61952368 AGGTTTACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TTATTTTA
Found at i:61953303 original size:41 final size:41
Alignment explanation
Indices: 61953241--61953358 Score: 164
Period size: 41 Copynumber: 2.9 Consensus size: 41
61953231 ATTTGCAATA
* * * *
61953241 AAACGCCACAAAAAACAGAGCAATAGCGGCGTTTTTTATCC
1 AAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGACCC
*
61953282 AAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGGCCC
1 AAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGACCC
* * *
61953323 AAACGCCGCTAAAAACTAAGCAATAGCGGCGATTTT
1 AAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTT
61953359 CGAAAAATGC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.19
Consensus pattern (41 bp):
AAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTTGACCC
Found at i:61953417 original size:41 final size:41
Alignment explanation
Indices: 61953346--61953575 Score: 289
Period size: 41 Copynumber: 5.6 Consensus size: 41
61953336 AACTAAGCAA
* * * * *** *
61953346 TAGCGGCGATTTTCGAAAAATGCCTCTATAGGTTAAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
* * * * * *
61953387 TAGTGGCGCTTCTGGAAAAACGCTGCTATAGGTCAAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
*
61953428 TAGCGGCGCTTTTGGAAAAACGCTGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
61953469 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
* *
61953510 TAGCGACGCTTTTGGAAAAATGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
* *
61953551 TAGTGGCACTTTTGGAAAAACGCCG
1 TAGCGGCGCTTTTGGAAAAACGCCG
61953576 TAAAAAAGTA
Statistics
Matches: 169, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 169 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
Found at i:61953914 original size:18 final size:18
Alignment explanation
Indices: 61953886--61953935 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
61953876 TCCCTTGTTA
61953886 TATATATATATATTAA-ACT
1 TATA-ATATATATTAAGA-T
*
61953905 TCTAATATATATTAAGAT
1 TATAATATATATTAAGAT
61953923 TATAATATATATT
1 TATAATATATATT
61953936 TAGGGTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (18 bp):
TATAATATATATTAAGAT
Found at i:61954380 original size:17 final size:17
Alignment explanation
Indices: 61954358--61954390 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
61954348 TTTAATGTAG
*
61954358 AAGATAAATGTATATAT
1 AAGATAAATATATATAT
61954375 AAGATAAATATATATA
1 AAGATAAATATATATA
61954391 AATTATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (17 bp):
AAGATAAATATATATAT
Found at i:61958276 original size:23 final size:22
Alignment explanation
Indices: 61958229--61958272 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61958219 AATTACTATT
* *
61958229 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61958251 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61958273 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61959371 original size:23 final size:22
Alignment explanation
Indices: 61959324--61959367 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61959314 AAATTACTAT
* *
61959324 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61959346 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61959368 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61960259 original size:368 final size:371
Alignment explanation
Indices: 61957934--61965516 Score: 14097
Period size: 369 Copynumber: 20.6 Consensus size: 371
61957924 CTTGTCCATT
*
61957934 AAAATTACACACAATAGCTGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
1 AAAATTACA-ACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
61957999 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTA-G
65 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
61958063 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAAGTTCTATCGA
130 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAAAAAGTTCTATCGA
*
61958128 GCTCATTTACTATTGAATATTTATATAACCTTAA-TTATTTCCAATTTACTTATAAAAATT-AAC
194 GCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAAC
61958191 TACGATTCTTTTTTGATATTA-TAT-TTCAAATTACTATTTTTTTATATTAATAATGTTTTATTT
259 TACGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTT
61958254 TAATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
323 TAATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61958303 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61958368 ATAGGCTGGAAACCTGACGGGTTGCCTT-TATCGAGCTGCAA-ATATAATGGAT-CT-CCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61958429 GTAACAACG-CACGTATGATGAATCTT-AAAAATTC-AAAA-ACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61958490 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTAT-AAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61958554 CGATTC-TTTTTGATATTATTATATTCAAATTACTA-TTTTTATATTAATAATG-TTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61958616 TATTTAAT-ATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61958661 -AAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61958725 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGAT-TAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61958789 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61958854 TCATTTACTATTG-ATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61958918 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTA-TTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
61958982 ATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
325 ATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61959029 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61959094 ATAGGCTGGAAACCTGACGGGTTGCC-TATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61959158 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61959223 TCATTTACTATTGACTATTTATATAACCTTAATTTATTTCCA-TTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61959287 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61959352 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61959398 AAAATTACAAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
1 AAAATTAC-AACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
61959463 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
65 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
61959528 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
130 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
61959593 CTCATTTACTATTGAATATTTATATAACCTTAATTTA-TTCCAG-TTA-TTATAAAAATTAAACT
195 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
61959655 ACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTA
260 ACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTA
61959720 ATATTTAA-AA-TTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
325 ATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61959765 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61959830 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61959895 GTAACAACGCCACGTATGATGAATCTTAAAAAATTC-AAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61959959 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCA-TTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61960023 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61960088 TATTTAAT-ATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61960133 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61960198 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61960263 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61960327 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTAT-AAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61960391 CGA-TC-TTTTTGATATTATTATATTCAAATTACTATTTTTT-TATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61960453 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61960499 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTT-AATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61960563 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCC-CCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61960627 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61960692 TCATTTAC--TTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61960755 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
*
61960819 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61960865 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61960930 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61960995 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61961060 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCA-TTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61961124 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61961189 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61961235 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61961300 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCT-CCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61961364 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAAGTTCTATCGAG
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAAAAAGTTCTATCGAG
61961429 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
195 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
61961494 ACGATTC-TTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTA
260 ACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTA
61961558 ATATTTAATAATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
325 ATATTTAATAA-TTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61961606 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61961671 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAG-TATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61961735 GTAACAACGCCACGTATGATGAATCTTAAAAAATT-AAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61961799 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61961864 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61961929 TATTTAAT-ATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61961974 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAG-AT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61962038 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61962103 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61962168 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61962233 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61962298 TATTTAATAATTTTAAA-TT-TTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61962342 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
*
61962407 ATAGGCTGGAAACCTGACGGGTTGCCTTTTATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61962472 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61962537 TCATTTAC--TTGAATATTTATATAACCTTAATTTATTTCCAG-TTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
*
61962599 CGATTATTTTTTGATA-TATTATATTCAAATTACTA-TTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61962662 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61962708 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61962773 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61962838 GTAACAACGCCACGTATGATGAATCTT-AAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61962902 TCATTTACTGTTGAATATTTATATAACCTTAATTTATTTCCA-TTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61962966 CGA-T-TTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61963029 TATTTAATAATTTTAAATTTCTTT-AAAGTTATAACTA-TTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61963073 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61963138 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAG-TATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61963202 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61963267 -CATTTACTGTTGAATATTTATAT-ACCTTAATTTATTTCCAGTTTACTTAT-AAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
* *
61963329 CGATTATTTTTTGATATTTATTATATTCAAATTACTA--TTTTATATTGATAATGTTTTATTTTA
261 CGATTCTTTTTTGATA-TTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTA
61963392 ATATTT-A-AATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
325 ATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
*
61963437 -AAATTACTACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61963501 ATAGGCTGGAAACCTGACGGG-TGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61963565 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAAGTTCTATCGAG
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAAAAAGTTCTATCGAG
61963630 CTCATTTACTATTG-ATA-TTAT-TAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
195 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
*
61963692 A-GATTCTTTTCTGATATTATTATATTCAAATTACTA-TTTTTA-A-TAATAATTGTTTTATTTT
260 ACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAA-TGTTTTATTTT
61963753 AATATTTAAT-ATTTTAAATTTCTTTAAAAGTTATAACTAC-TTTATC
324 AATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61963799 AAAATTACAACAATAGCTGACCTTCTCTCCAA-CTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61963863 ATAGGCTGGAAACCTGAC-GGTTGCCTTATTATCGAGCTGCAAG-TATAATGGATCCTCCCTA-G
66 ATAGGCTGGAAACCTGACGGGTTGCCTTA-TATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
61963925 TGTAACAACG-CACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAACTTGAAAAAAGT
130 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTC-AAAA-A---G----ACTTGAAAAAAGT
61963989 TCTATCGAGCTCATTTACTATTGAATA-TTATATTAACCTTAATTTATTTCCAGTTTACTTATAA
186 TCTATCGAGCTCATTTACTATTGAATATTTATA-TAACCTTAATTTATTTCCAGTTTACTTATAA
61964053 AAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATT-ATAAT
250 AAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAAT
61964117 GTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAAGTTATAA-TACTTTTATC
314 GTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61964174 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61964239 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61964304 GTAACAACG-CACGTATGATGAATCTT-AAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61964367 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61964432 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61964497 TATTTAAT-ATTTTAAA-TTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61964541 -AAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTC-AAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61964604 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61964669 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61964734 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61964799 CGATTC-TTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
61964863 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61964909 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61964974 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61965039 GTAACAACGCCACGTATGATGAATCTT-AAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61965103 TCATTTACTGTTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
* *
61965168 CGATTATTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTGATAATG-TTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
61965232 ATATTTAATAA-TTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
325 ATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61965278 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61965343 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61965408 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61965473 TCATTTACTATTGAATATTTAT-TAACCTTAATTTATTTCCAGTT
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTT
61965517 AATTACTATT
Statistics
Matches: 7076, Mismatches: 24, Indels: 228
0.97 0.00 0.03
Matches are distributed among these distances:
357 92 0.01
358 58 0.01
359 22 0.00
360 127 0.02
361 77 0.01
362 183 0.03
363 412 0.06
364 342 0.05
365 577 0.08
366 854 0.12
367 587 0.08
368 966 0.14
369 1324 0.19
370 776 0.11
371 411 0.06
372 35 0.00
374 30 0.00
375 70 0.01
376 69 0.01
377 36 0.01
378 28 0.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (371 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
TATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
Found at i:61961208 original size:23 final size:22
Alignment explanation
Indices: 61961161--61961204 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61961151 AAATTACTAT
* *
61961161 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61961183 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61961205 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61961565 original size:23 final size:21
Alignment explanation
Indices: 61961531--61961574 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
61961521 AAATTACTAT
*
61961531 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAAT-TTTTA
61961553 TTTTAATATTTAATAATTTTTA
1 TTTTAATA-TTAATAATTTTTA
61961575 AATTTCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTAATATTAATAATTTTTA
Found at i:61962317 original size:23 final size:22
Alignment explanation
Indices: 61962270--61962318 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
61962260 AAATTACTAT
* *
61962270 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61962292 TTTTAATATTTAATAAT-TTTAAA
1 TTTTAATA-TTAATAATGTTT-AA
61962315 TTTT
1 TTTT
61962319 TAAAAGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61962681 original size:23 final size:22
Alignment explanation
Indices: 61962633--61962677 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
61962623 TCAAATTACT
* *
61962633 ATTTTTATATTAATAATGTTTT
1 ATTTTAATATTAATAATGTTTA
61962655 ATTTTAATATTTAATAAT-TTTA
1 ATTTTAATA-TTAATAATGTTTA
61962677 A
1 A
61962678 ATTTCTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTTTAATATTAATAATGTTTA
Found at i:61963048 original size:23 final size:22
Alignment explanation
Indices: 61963001--61963044 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61962991 AAATTACTAT
* *
61963001 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61963023 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61963045 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61964882 original size:23 final size:22
Alignment explanation
Indices: 61964835--61964878 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61964825 AAATTACTAT
* *
61964835 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61964857 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61964879 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61965572 original size:23 final size:22
Alignment explanation
Indices: 61965524--61965568 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
61965514 GTTAATTACT
* *
61965524 ATTTTTATATTAATAATGTTTT
1 ATTTTAATATTAATAATGTTTA
61965546 ATTTTAATATTTAATAAT-TTTA
1 ATTTTAATA-TTAATAATGTTTA
61965568 A
1 A
61965569 ATTTCTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTTTAATATTAATAATGTTTA
Found at i:61966650 original size:372 final size:372
Alignment explanation
Indices: 61965517--61972057 Score: 12343
Period size: 372 Copynumber: 17.7 Consensus size: 372
61965507 ATTTCCAGTT
61965517 AATTACTA--TTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61965580 AG-TATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61965644 TTTTAAAGATTCAAAGTATATAGGCTGG-AACCTGACGGGTTGCCTTATATCGAGCTGCAAG-TA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61965707 TAATGGAT-CTCCCTAGGTGTAACAACG-CACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
*
61965770 GAAAAAAGTTCTATCGAGCTCATTTACTGTTGAATATTTATATAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
*
61965835 ACTTATAAAAATTAAACTACGATTATTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
*
61965882 AATTACTATTTTTTTATATTGATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61965947 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61966012 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61966077 TAATGGATCCT-CCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
*
61966141 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
*
61966206 ACTTATAAAAATTAAACTACGATTCTTTTCTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
* *
61966253 AATTACTATTTTTTTATAATAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61966318 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61966383 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGGTA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61966448 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
61966513 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
*
61966578 ACTTATAAAAATTAAACTTCGATTCTTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
*
61966625 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
*
61966690 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61966755 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61966820 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
*
61966885 G-AAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61966949 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
61966996 AATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
*
61967060 AGTTATTACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61967125 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTTTATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61967190 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
* *
61967255 GAAAAAAGTTCTATCGAGCTCATTTACTGTTGAATATGTATATAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
*
61967320 ACTTATAAAAATTAAACTACGATTATTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
*
61967367 AATTACTATTTTTTTATATTGATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61967432 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61967497 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61967562 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
61967627 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61967692 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
61967739 AATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61967803 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61967868 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGGTA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
* *
61967933 TAATGGATCCTCCCTAGGTGTAACAACGACACGTATGATGAATCTTAAAAAATTTAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
61967998 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61968063 ACTTATAAAAATTAAACTACGATTC-TTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
*
61968109 AATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
*
61968173 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61968238 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61968303 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
* *
61968368 GAAAAAAGTTCTATCGAGCTCATTTACTGTTGAATATTTATATAACCTTAATTTATTTCCAATTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61968433 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
61968480 AATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61968544 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61968609 TTTTAAAGATTCAAAGTATATAGGCTGG-AACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61968673 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTT-AAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
*
61968737 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61968802 ACTTATAAAAATTAAACTACGATTC-TTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
*
61968848 AATTACTA-TTTTTTATATTAATAATG-TTTATTTTAATATTTAATATTTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61968911 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61968976 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATTGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
*
61969041 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATTTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
* *
61969106 GAAAAAAGTTGTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61969171 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
61969218 AATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61969282 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61969347 TTTTAAAGATTCAAAGTATATAGGCTGGAAATCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61969412 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
61969477 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
*
61969542 ACTTATAAAAATTAAACTACGATTATTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
61969589 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
*
61969654 AGTTATAACTACTTTTATCAAAATTACAACAATAGTTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61969719 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGGTA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
*
61969784 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTTAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
*
61969849 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATTTTTATATAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61969914 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
*
61969961 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAGA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
*
61970026 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61970091 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
*
61970156 TAATGGATCCTCCCTAAGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
61970221 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
*
61970286 ACTTATAAAAATTAAACTACGATTCTTTTCTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
* *
61970333 AATTACTATTTTTTTATAATAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61970398 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61970463 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGGTA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61970528 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
*
61970593 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACTTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61970658 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
*
61970705 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTT-AA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
*
61970769 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61970834 TTTTAAAAATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
*
61970899 TAATGGATCCTTCCTAGGTGTAACAACGCCACGTATGATGAATCTT-AAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
*
61970963 G-AAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTT-CAATTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61971026 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
61971073 AATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61971137 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61971202 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTT-TATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61971266 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
*
61971331 GAAAAAAGTTCTATCGAGCTCATTTACTGTTGAATA-TTATATAACCTTAATTTATTTCCAGTTT
261 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61971395 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
326 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
*
61971442 AATTACTATTTTTTTTATATTGATAATGTTTTATTTTAATATTTAAT-A-TTTAAATTTCTTTAA
1 AATTACTA-TTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAA
61971505 AAGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAAT
65 AAGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAAT
61971570 ATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGAT
130 ATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGAT
61971635 ATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT-AAAAAGACT
195 ATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACT
61971699 TGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTT
260 TGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTT
*
61971764 TACTTATAAAAATTAAACTACGATTCTTTTCTGATATTATTATATTCA
325 TACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
* * *
61971812 AATTACTATTTTTTTATAATAATAATGTTTTATTTTAATATTTAATATTTTTTAATTTCTTTAAA
1 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61971877 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
66 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61971942 TTTTAAAGATTCAAAGTATATA-GCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
131 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
*
61972006 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGACGAATCTTAAAAAA
196 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAA
61972058 AAATTTGTTT
Statistics
Matches: 6051, Mismatches: 99, Indels: 47
0.98 0.02 0.01
Matches are distributed among these distances:
365 8 0.00
367 299 0.05
368 429 0.07
369 604 0.10
370 1032 0.17
371 1748 0.29
372 1931 0.32
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (372 bp):
AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCA
Found at i:61967052 original size:23 final size:22
Alignment explanation
Indices: 61967005--61967048 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61966995 AAATTACTAT
* *
61967005 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61967027 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61967049 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61967795 original size:23 final size:22
Alignment explanation
Indices: 61967748--61967791 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61967738 AAATTACTAT
* *
61967748 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61967770 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61967792 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61968024 original size:743 final size:743
Alignment explanation
Indices: 61965517--61972057 Score: 12351
Period size: 743 Copynumber: 8.8 Consensus size: 743
61965507 ATTTCCAGTT
61965517 AATTACTA-TTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
1 AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
61965581 G-TATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
66 GTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
61965645 TTTAAAGATTCAAAGTATATAGGCTGG-AACCTGACGGGTTGCCTTATATCGAGCTGCAAG-TAT
131 TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATAT
61965708 AATGGAT-CTCCCTAGGTGTAACAACG-CACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG
196 AATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG
*
61965771 AAAAAAGTTCTATCGAGCTCATTTACTGTTGAATATTTATATAACCTTAATTTATTTCCAGTTTA
261 AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTA
*
61965836 CTTATAAAAATTAAACTACGATTATTTTTTGATATTATTATATTCAAATTACTATTTTTTTATAT
326 CTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATAT
* *
61965901 TGATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
391 TAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61965966 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
456 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61966031 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCT-CCTAGGT
521 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61966095 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
586 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61966160 TCATTTACTATTGAATATTTATTTAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
651 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
*
61966225 CGATTCTTTTCTGATATTATTATATTCA
716 CGATTCTTTTTTGATATTATTATATTCA
* *
61966253 AATTACTATTTTTTTATAATAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAA
1 AATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
61966318 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
65 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61966383 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGGTA
130 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
61966448 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
195 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
61966513 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
260 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
*
61966578 ACTTATAAAAATTAAACTTCGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATA
325 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATA
61966643 TTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTAT
390 TTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTAT
*
61966708 CAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATATTTTAAAGATTCAAAGTA
455 CAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
61966773 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
520 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
61966838 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAAAAGTTCTATCGAG
585 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
*
61966902 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACT
650 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
61966967 ACGATTCTTTTTTGATATTATTATATTCA
715 ACGATTCTTTTTTGATATTATTATATTCA
61966996 AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
1 AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
*
61967061 GTTATTACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
66 GTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
*
61967126 TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTTTATCGAGCTGCAAGATAT
131 TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATAT
61967191 AATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG
196 AATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG
* *
61967256 AAAAAAGTTCTATCGAGCTCATTTACTGTTGAATATGTATATAACCTTAATTTATTTCCAGTTTA
261 AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTA
*
61967321 CTTATAAAAATTAAACTACGATTATTTTTTGATATTATTATATTCAAATTACTATTTTTTTATAT
326 CTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATAT
* *
61967386 TGATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
391 TAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61967451 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
456 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61967516 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
521 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61967581 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
586 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
61967646 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
651 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61967711 CGATTCTTTTTTGATATTATTATATTCA
716 CGATTCTTTTTTGATATTATTATATTCA
61967739 AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
1 AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
61967804 GTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
66 GTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
*
61967869 TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGGTAT
131 TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATAT
* *
61967934 AATGGATCCTCCCTAGGTGTAACAACGACACGTATGATGAATCTTAAAAAATTTAAAAAGACTTG
196 AATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG
61967999 AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTA
261 AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTA
61968064 CTTATAAAAATTAAACTACGATTC-TTTTTGATATTATTATATTCAAATTACTA-TTTTTTATAT
326 CTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATAT
61968127 TAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
391 TAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
*
61968192 AAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATATTTTAAAGATTCAAAGTAT
456 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
61968257 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
521 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
61968322 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
586 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
* *
61968387 TCATTTACTGTTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
651 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61968452 CGATTCTTTTTTGATATTATTATATTCA
716 CGATTCTTTTTTGATATTATTATATTCA
61968480 AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
1 AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
61968545 GTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
66 GTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
61968610 TTTAAAGATTCAAAGTATATAGGCTGG-AACCTGACGGGTTGCCTTATATCGAGCTGCAAGATAT
131 TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATAT
61968674 AATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTT-AAAAATTCAAAAAGACTTG
196 AATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG
*
61968738 AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTA
261 AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTA
61968803 CTTATAAAAATTAAACTACGATTC-TTTTTGATATTATTATATTCAAATTACTA-TTTTTTATAT
326 CTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATAT
61968866 TAATAATG-TTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
391 TAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
61968930 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
456 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
*
61968995 ATAGGCTGGAAACCTGACGGGTTGCCTTATATTGAGCTGCAAGATATAATGGATCCTCCCTAGGT
521 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
* *
61969060 GTAACAACGCCACGTATGATGAATTTTAAAAAATTCAAAAAGACTTGAAAAAAGTTGTATCGAGC
586 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61969125 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
651 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61969190 CGATTCTTTTTTGATATTATTATATTCA
716 CGATTCTTTTTTGATATTATTATATTCA
61969218 AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
1 AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
61969283 GTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
66 GTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
*
61969348 TTTAAAGATTCAAAGTATATAGGCTGGAAATCTGACGGGTTGCCTTATATCGAGCTGCAAGATAT
131 TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATAT
61969413 AATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG
196 AATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG
61969478 AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTA
261 AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTA
*
61969543 CTTATAAAAATTAAACTACGATTATTTTTTGATATTATTATATTCAAATTACTATTTTTTTATAT
326 CTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATAT
*
61969608 TAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
391 TAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
*
61969673 AAAATTACAACAATAGTTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
456 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
*
61969738 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGGTATAATGGATCCTCCCTAGGT
521 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
*
61969803 GTAACAACGCCACGTATGATGAATCTTAAAAAATTTAAAAAGACTTGAAAAAAGTTCTATCGAGC
586 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
61969868 TCATTTACTATTGAATTTTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
651 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
61969933 CGATTCTTTTTTGATATTATTATATTCA
716 CGATTCTTTTTTGATATTATTATATTCA
*
61969961 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAGA
1 AATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
*
61970026 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATA
65 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
61970091 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
130 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
*
61970156 TAATGGATCCTCCCTAAGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
195 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
61970221 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
260 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
*
61970286 ACTTATAAAAATTAAACTACGATTCTTTTCTGATATTATTATATTCAAATTACTATTTTTTTATA
325 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATA
*
61970351 ATAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTAT
390 TTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTAT
61970416 CAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
455 CAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
*
61970481 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGGTATAATGGATCCTCCCTAGG
520 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
61970546 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
585 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
*
61970611 CTCATTTACTATTGAATATTTATATAACTTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
650 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
61970676 ACGATTCTTTTTTGATATTATTATATTCA
715 ACGATTCTTTTTTGATATTATTATATTCA
*
61970705 AATTACTATTTTTTTATATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTT-AA
1 AATTACTA-TTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAA
*
61970769 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATA
65 AGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATA
*
61970834 TTTTAAAAATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
130 TTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATA
*
61970899 TAATGGATCCTTCCTAGGTGTAACAACGCCACGTATGATGAATCTT-AAAAATTCAAAAAGACTT
195 TAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTT
*
61970963 G-AAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTT-CAATTT
260 GAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTT
61971026 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATA
325 ACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATA
*
61971090 TTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAAGTTATAACTACTTTTAT
390 TTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTAT
61971155 CAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
455 CAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
61971220 TATAGGCTGGAAACCTGACGGGTTGCCTT-TATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
520 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
61971284 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
585 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
*
61971349 CTCATTTACTGTTGAATA-TTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
650 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACT
61971413 ACGATTCTTTTTTGATATTATTATATTCA
715 ACGATTCTTTTTTGATATTATTATATTCA
*
61971442 AATTACTATTTTTTTTATATTGATAATGTTTTATTTTAATATTTAAT-A-TTTAAATTTCTTTAA
1 AATTACTA--TTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAA
61971505 AAGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAAT
64 AAGTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAAT
61971570 ATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGAT
129 ATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGAT
61971635 ATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT-AAAAAGACT
194 ATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACT
61971699 TGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTT
259 TGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTT
*
61971764 TACTTATAAAAATTAAACTACGATTCTTTTCTGATATTATTATATTCAAATTACTATTTTTTTAT
324 TACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTAT
* *
61971829 AATAATAATGTTTTATTTTAATATTTAATATTTTTTAATTTCTTTAAAAGTTATAACTACTTTTA
389 ATTAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTA
61971894 TCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGT
454 TCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGT
61971959 ATATA-GCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAG
519 ATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAG
*
61972023 GTGTAACAACGCCACGTATGACGAATCTTAAAAAA
584 GTGTAACAACGCCACGTATGATGAATCTTAAAAAA
61972058 AAATTTGTTT
Statistics
Matches: 5690, Mismatches: 93, Indels: 40
0.98 0.02 0.01
Matches are distributed among these distances:
736 21 0.00
737 268 0.05
738 767 0.13
739 573 0.10
740 486 0.09
741 610 0.11
742 697 0.12
743 1430 0.25
744 838 0.15
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (743 bp):
AATTACTATTTTTTATATTAATAATGTTTTATTTTAATATTTAATAATTTTAAATTTCTTTAAAA
GTTATAACTACTTTTATCAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATAT
TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATAT
AATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG
AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTA
CTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATAT
TAATAATGTTTTATTTTAATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAGTTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCA
Found at i:61968536 original size:23 final size:22
Alignment explanation
Indices: 61968489--61968532 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61968479 AAATTACTAT
* *
61968489 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61968511 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61968533 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61969274 original size:23 final size:22
Alignment explanation
Indices: 61969227--61969270 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61969217 AAATTACTAT
* *
61969227 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61969249 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61969271 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61969646 original size:23 final size:22
Alignment explanation
Indices: 61969599--61969642 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61969589 AATTACTATT
* *
61969599 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61969621 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61969643 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61970018 original size:23 final size:22
Alignment explanation
Indices: 61969971--61970014 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61969961 AATTACTATT
* *
61969971 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61969993 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61970015 ATTTCTTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61971129 original size:23 final size:22
Alignment explanation
Indices: 61971082--61971125 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
61971072 AAATTACTAT
* *
61971082 TTTTTATATTAATAATGTTTTA
1 TTTTAATATTAATAATGTTTAA
61971104 TTTTAATATTTAATAAT-TTTAA
1 TTTTAATA-TTAATAATGTTTAA
61971126 ATTTCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATATTAATAATGTTTAA
Found at i:61972177 original size:24 final size:24
Alignment explanation
Indices: 61972150--61972217 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
61972140 ATTATTATTG
*
61972150 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
61972174 AAATATTATTC-TCTGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
61972198 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
61972218 CCATTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
23 2 0.05
24 35 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:61972438 original size:15 final size:15
Alignment explanation
Indices: 61972394--61972449 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
61972384 AACGACATGT
61972394 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
61972410 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
61972423 ATATTATTTAATTAA
1 ATATTATTTAATTAA
61972438 ATATTATTTAAT
1 ATATTATTTAAT
61972450 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:61972565 original size:9 final size:9
Alignment explanation
Indices: 61972553--61972778 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
61972543 TATTTGATAT
*
61972553 CATAATTTA
1 CATAACTTA
61972562 CATAACTTA
1 CATAACTTA
* *
61972571 TATAACATA
1 CATAACTTA
*
61972580 TATAACTTA
1 CATAACTTA
61972589 CATAACTTA
1 CATAACTTA
* *
61972598 TATAACATA
1 CATAACTTA
61972607 CATAACTTA
1 CATAACTTA
*
61972616 TATAACTTA
1 CATAACTTA
*
61972625 TATAACTTA
1 CATAACTTA
* *
61972634 GATAA-ATA
1 CATAACTTA
*
61972642 TATAACTTA
1 CATAACTTA
61972651 CATAACTTA
1 CATAACTTA
61972660 CATAATACTTA
1 CAT-A-ACTTA
* *
61972671 AATATATTTTATA
1 CATA-A--CT-TA
*
61972684 TCATAATTTA
1 -CATAACTTA
61972694 CATAACTTA
1 CATAACTTA
61972703 CATAACTTA
1 CATAACTTA
*
61972712 TATAACTTA
1 CATAACTTA
* *
61972721 GATAA-ATA
1 CATAACTTA
* *
61972729 TATAATTTA
1 CATAACTTA
*
61972738 CATAA-ATA
1 CATAACTTA
* * *
61972746 TATATCATA
1 CATAACTTA
*
61972755 TCATAAATTA
1 -CATAACTTA
61972765 CATAACTTA
1 CATAACTTA
61972774 CATAA
1 CATAA
61972779 TACTTAAATA
Statistics
Matches: 174, Mismatches: 33, Indels: 20
0.77 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 130 0.75
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:61972575 original size:18 final size:18
Alignment explanation
Indices: 61972553--61972778 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
61972543 TATTTGATAT
* *
61972553 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
61972571 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
61972589 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
61972607 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
61972625 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
61972642 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
61972660 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
61972684 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
61972703 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
61972721 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
61972738 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
61972755 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
61972774 CATAA
1 CATAA
61972779 TACTTAAATA
Statistics
Matches: 164, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
17 38 0.23
18 92 0.56
19 11 0.07
20 5 0.03
21 4 0.02
22 4 0.02
23 4 0.02
24 3 0.02
25 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:61972766 original size:114 final size:114
Alignment explanation
Indices: 61972581--61972802 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
61972571 TATAACATAT
* * *
61972581 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
61972646 ACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
61972695 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATA-AATAT-A
61972758 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
61972803 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:61977999 original size:13 final size:14
Alignment explanation
Indices: 61977983--61978011 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
61977973 TTCTAAATAT
61977983 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
61977996 TTATAATTGTTTAA
1 TTATAATTGTTTAA
61978010 TT
1 TT
61978012 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:61978448 original size:21 final size:21
Alignment explanation
Indices: 61978423--61978463 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
61978413 TTAGAGCGGA
*
61978423 GGCAGTAGAGAGGGAGGCAGC
1 GGCAGCAGAGAGGGAGGCAGC
*
61978444 GGCAGCAGCGAGGGAGGCAG
1 GGCAGCAGAGAGGGAGGCAG
61978464 AGCATAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.54, T:0.02
Consensus pattern (21 bp):
GGCAGCAGAGAGGGAGGCAGC
Found at i:61978867 original size:43 final size:42
Alignment explanation
Indices: 61978838--61979133 Score: 425
Period size: 43 Copynumber: 7.0 Consensus size: 42
61978828 TTTGTGGGAA
*
61978838 AAACGCCGCTAAAGGCCATGACTTCTAGCGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCG-TTTTTTTCC
61978881 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCG-TTTTTTTCC
* *
61978924 AAACGCCGCTAAAGGACATGACTTTTAGCGGCGCTTCTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCG-TTTTTTTCC
* * **
61978967 AAACGCCGCTAAAGGCCATGACTTTTAGCAGCGCTTTGCTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGTTTTTTTCC
61979009 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-C
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCG-TTTTTTTCC
* * *
61979051 AAACGCCACTAAAGGACATGACTTTTAACGGCGCTTTTTTT-C
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCG-TTTTTTTCC
*
61979093 AAACGCCGCTAAAGGCTATGACTTTTAGCGGCGCTTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCG-TTTTTTT
61979134 AATAAACGCC
Statistics
Matches: 232, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
42 114 0.49
43 118 0.51
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (42 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGTTTTTTTCC
Found at i:61978965 original size:86 final size:86
Alignment explanation
Indices: 61978838--61979133 Score: 481
Period size: 86 Copynumber: 3.5 Consensus size: 86
61978828 TTTGTGGGAA
*
61978838 AAACGCCGCTAAAGGCCATGACTTCTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
61978903 TTTTAGCGGCGCTTTTTTTCC
66 TTTTAGCGGCGCTTTTTTTCC
* *
61978924 AAACGCCGCTAAAGGACATGACTTTTAGCGGCGCTTCTTTTCCAAACGCCGCTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
* **
61978989 TTTTAGCAGCGC-TTTGCTCC
66 TTTTAGCGGCGCTTTTTTTCC
* *
61979009 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-CAAACGCCACTAAAGGACATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
*
61979073 TTTTAACGGCGCTTTTTTT-C
66 TTTTAGCGGCGCTTTTTTTCC
*
61979093 AAACGCCGCTAAAGGCTATGACTTTTAGCGGCGCTTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT
61979134 AATAAACGCC
Statistics
Matches: 194, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
84 72 0.37
85 49 0.25
86 73 0.38
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (86 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
TTTTAGCGGCGCTTTTTTTCC
Found at i:61979133 original size:42 final size:42
Alignment explanation
Indices: 61978838--61979133 Score: 466
Period size: 42 Copynumber: 7.0 Consensus size: 42
61978828 TTTGTGGGAA
*
61978838 AAACGCCGCTAAAGGCCATGACTTCTAGCGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-C
61978881 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-C
* *
61978924 AAACGCCGCTAAAGGACATGACTTTTAGCGGCGCTTCTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTT-TTTTTC
* ** *
61978967 AAACGCCGCTAAAGGCCATGACTTTTAGCAGCGCTTTGCTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
61979009 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
* * *
61979051 AAACGCCACTAAAGGACATGACTTTTAACGGCGCTTTTTTTC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
*
61979093 AAACGCCGCTAAAGGCTATGACTTTTAGCGGCGCTTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT
61979134 AATAAACGCC
Statistics
Matches: 234, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
42 118 0.50
43 112 0.48
44 4 0.02
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (42 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
Found at i:61979730 original size:60 final size:60
Alignment explanation
Indices: 61979630--61979743 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
61979620 CTATTCAAAA
* *
61979630 ATCAGAGTTAACTAGGCCTTAGCCCATATCAATATTAATCTGGGTCATAGGCCCTTACAAT
1 ATCAGAGTTAACTAGGCCTTAGCCCATATCAATATCAATCTGGGCCATA-GCCCTTACAAT
* *
61979691 ATCAGAG-TATACTGGGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCT
1 ATCAGAGTTA-ACTAGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCT
61979744 ATTACAAGTC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
59 5 0.10
60 29 0.60
61 14 0.29
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (60 bp):
ATCAGAGTTAACTAGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTTACAAT
Found at i:61979825 original size:19 final size:20
Alignment explanation
Indices: 61979783--61979826 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
61979773 CCATATTAAC
** *
61979783 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
61979803 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
61979822 ACAGT
1 ACAGT
61979827 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:61981799 original size:25 final size:25
Alignment explanation
Indices: 61981771--61981865 Score: 172
Period size: 25 Copynumber: 3.8 Consensus size: 25
61981761 CTCTATTAAT
61981771 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
61981796 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
61981821 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
61981846 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
61981866 CAGTAAACTG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 68 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:61983301 original size:93 final size:93
Alignment explanation
Indices: 61983188--61983359 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
61983178 CGCCCATAAG
* * *
61983188 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
61983253 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
61983281 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
61983346 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
61983360 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61983356 original size:46 final size:46
Alignment explanation
Indices: 61983181--61983356 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
61983171 TGTAACCCGC
* * *
61983181 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* ** *
61983227 CCATAAGTGAACTTAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
61983277 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
61983320 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
61983357 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:61990407 original size:93 final size:93
Alignment explanation
Indices: 61990295--61990466 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
61990285 CGCCCATAAG
*
61990295 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
61990359 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
61990388 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61990453 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
61990467 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61990461 original size:46 final size:46
Alignment explanation
Indices: 61990288--61990463 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
61990278 TGTAACCCGC
* *
61990288 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
61990334 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
61990384 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
61990427 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
61990464 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:61991480 original size:55 final size:56
Alignment explanation
Indices: 61991415--61991519 Score: 135
Period size: 56 Copynumber: 1.9 Consensus size: 56
61991405 AGCATGGCTG
*
61991415 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGAT-ATTCTGTGGCAGTGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATT-TGTGGCAGTGCCA
* * *
61991471 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCA
61991520 TAGCCACAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
55 18 0.42
56 25 0.58
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCAGTGCCA
Found at i:61991492 original size:27 final size:27
Alignment explanation
Indices: 61991440--61991519 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
61991430 GTGACAGAGT
* *
61991440 CACCAGATACAGATATTCTGTGGCAGTGC
1 CACCAGA-ACAGATA-TATGTGGCAGGGC
61991469 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATATGTGGCAGGGC
*
61991496 CACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATATGTGGCA
61991520 TAGCCACAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.51
28 16 0.34
29 7 0.15
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGGGC
Found at i:61991682 original size:28 final size:28
Alignment explanation
Indices: 61991651--61991728 Score: 156
Period size: 28 Copynumber: 2.8 Consensus size: 28
61991641 TACAAAGGTC
61991651 ATTTTGCATACATAGGGGTATAATGGTA
1 ATTTTGCATACATAGGGGTATAATGGTA
61991679 ATTTTGCATACATAGGGGTATAATGGTA
1 ATTTTGCATACATAGGGGTATAATGGTA
61991707 ATTTTGCATACATAGGGGTATA
1 ATTTTGCATACATAGGGGTATA
61991729 CTAGTACATC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (28 bp):
ATTTTGCATACATAGGGGTATAATGGTA
Found at i:61994915 original size:93 final size:93
Alignment explanation
Indices: 61994802--61994973 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
61994792 CGCCCATAAG
* *
61994802 CGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCAGACTCAACTC
61994866 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
61994895 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
61994960 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
61994974 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61994969 original size:46 final size:47
Alignment explanation
Indices: 61994795--61994970 Score: 211
Period size: 46 Copynumber: 3.8 Consensus size: 47
61994785 TGTAACCCGC
* *
61994795 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
61994841 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
*
61994891 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
61994934 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
61994971 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.54
47 31 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:61994989 original size:46 final size:44
Alignment explanation
Indices: 61994803--61994989 Score: 139
Period size: 46 Copynumber: 4.0 Consensus size: 44
61994793 GCCCATAAGC
* * * * *
61994803 GAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCG-G-ATGC-CAACCATCCAGT
*
61994849 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CAGT
* * *
61994896 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCCAGT
*
61994942 GAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCC-AGT
61994988 GA
1 GA
61994990 CATGTCACTT
Statistics
Matches: 113, Mismatches: 15, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 2 0.02
46 61 0.54
47 31 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCAGT
Found at i:61995877 original size:27 final size:27
Alignment explanation
Indices: 61995846--61996116 Score: 353
Period size: 27 Copynumber: 10.0 Consensus size: 27
61995836 GAGGCAAAAT
* * * *
61995846 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61995873 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61995900 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61995927 GGTAATTCTACCTTACATGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61995954 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61995981 GGTAATCCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61996008 AGTAATTCTACCATACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61996035 GGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61996062 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61996089 GGTAATTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61996116 G
1 G
61996117 ATATTTTACA
Statistics
Matches: 209, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 209 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:61996187 original size:27 final size:27
Alignment explanation
Indices: 61996024--61996281 Score: 133
Period size: 27 Copynumber: 9.7 Consensus size: 27
61996014 TCTACCATAC
**
61996024 AGGGGTATTTTGGTAATTTTACCCTA-T
1 AGGGGTATTTTGGTAATTTTA-CAAACT
* * **
61996051 AGGGGTATTTCGGTAATTCTACCCTAC-
1 AGGGGTATTTTGGTAATTTTA-CAAACT
* **
61996078 AGGGGTATTTCGGTAATTTTACCCTAC-
1 AGGGGTATTTTGGTAATTTTA-CAAACT
* * *
61996105 AAGGGTATTTCGAT-ATTTTAC--A--
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
61996127 A-GGGTATTTTTGGTATTTTTACAAGCC
1 AGGGGTA-TTTTGGTAATTTTACAAACT
**
61996154 AACGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* **
61996181 AGGGGTATTTTAGTAATTTTACTGA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
61996207 CGAGGGTATTTTGGTAATTTTACTAA-T
1 AG-GGGTATTTTGGTAATTTTACAAACT
* ** *
61996234 CGAGGGTATTTTGGTAATTTTGTAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACT
* *
61996262 AAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
61996282 TTAAATCGAG
Statistics
Matches: 193, Mismatches: 28, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
21 5 0.03
22 6 0.03
23 7 0.04
25 1 0.01
26 8 0.04
27 162 0.84
28 4 0.02
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:61996267 original size:54 final size:53
Alignment explanation
Indices: 61996127--61996295 Score: 157
Period size: 54 Copynumber: 3.1 Consensus size: 53
61996117 ATATTTTACA
* * *
61996127 AGGGTATTTTTGGT-ATTTTTACAAGCCAACGGTATTTTGGTAATTTTAC-AAACT
1 AGGGTA-TTTTGGTAATTTTTA-AA-CCAAGGGTATTTTGGTAATTTTACTAATCG
* * * *
61996181 AGGGGTATTTTAGTAA-TTTTACTGATCGAGGGTATTTTGGTAATTTTACTAATCG
1 A-GGGTATTTTGGTAATTTTTA--AACCAAGGGTATTTTGGTAATTTTACTAATCG
* *
61996236 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT-TTAAATCG
1 AGGGTATTTTGGTAATTTT-TAAACCAAGGGTATTTTGGTAATTTTACT-AATCG
61996290 AGGGTA
1 AGGGTA
61996296 AAACGGTAAT
Statistics
Matches: 94, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
53 1 0.01
54 77 0.82
55 14 0.15
56 2 0.02
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.43
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTTAAACCAAGGGTATTTTGGTAATTTTACTAATCG
Found at i:61996304 original size:81 final size:81
Alignment explanation
Indices: 61996231--61996657 Score: 422
Period size: 81 Copynumber: 5.3 Consensus size: 81
61996221 TAATTTTACT
*** * * * * *
61996231 AATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTTTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAACCAAGGGTAATATAGTAATTCTATAAATCGAGGGTA
61996296 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* * * * * * **
61996312 AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGCGTAACACGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAACCAAGGGTAATATAGTAATTCTATAAATCGAGGGTA
*
61996377 AAATGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* * * * * *
61996393 AATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAACCAAGGGTAATATAGTAATTCTATAAATCGAGGGTA
**
61996458 AAACGGTAATTCTAAA
66 AAACGGTAATTCTGTA
*** * * * * * * *
61996474 AATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAACATGGTAATTCTATAAATCAAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAACCAAGGGTAATATAGTAATTCTATAAATCGAGGGTA
* *
61996539 AAATGGTAATTCTATA
66 AAACGGTAATTCTGTA
* * *** * **
61996555 AATGGAGGGTAAAATGGTAATTCTATAAATGGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAACCAAGGGTAATATAGTAATTCTATAAATCGAGGGTA
* *
61996620 AAATGGTAATTCTATA
66 AAACGGTAATTCTGTA
*
61996636 AATCGAGGGTAAAACGGTAATT
1 AATCGAGGGTAAAATGGTAATT
61996658 CTGTAAATCG
Statistics
Matches: 301, Mismatches: 45, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 301 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTTTATAAACCAAGGGTAATATAGTAATTCTATAAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:61996692 original size:27 final size:27
Alignment explanation
Indices: 61996274--61996684 Score: 588
Period size: 27 Copynumber: 15.2 Consensus size: 27
61996264 GGGTATTTTA
* *
61996274 GTAATTTTTTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61996301 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
61996328 GTAATTCTGTAAATCGAGCGTAACACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
61996355 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61996382 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61996409 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
61996436 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61996463 GTAATTCTAAAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
61996490 ATAATTCTGTAAATCGAGGGTAACATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61996517 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61996544 GTAATTCTATAAATGGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
61996571 GTAATTCTATAAATGGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
61996598 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
61996625 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61996652 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
61996679 GTAATT
1 GTAATT
61996685 TTACAAATTG
Statistics
Matches: 345, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 345 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:61999094 original size:25 final size:25
Alignment explanation
Indices: 61999062--61999156 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
61999052 CTCTTTTAAT
* *
61999062 AACTGGGGTAAAACCCTTTTTGATA
1 AACTGGGGCAAAACCCTTTTCGATA
*
61999087 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAACCCTTTTCGATA
* *
61999112 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAACCCTTTTCGATA
* * *
61999137 AATTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAACCCTTTT
61999157 AGCACTTCCA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAACCCTTTTCGATA
Found at i:61999389 original size:27 final size:27
Alignment explanation
Indices: 61999359--61999736 Score: 366
Period size: 27 Copynumber: 14.0 Consensus size: 27
61999349 GAGGCAAAAT
* * *
61999359 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
61999386 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
61999413 GGTATTTCTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61999440 GGTAATTCTACCCTACATGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61999467 GGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
61999494 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
61999521 AATAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61999548 GGTAATTCTACCTTA-TAGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
** * * *
61999575 AATAATTCTACCGTA-TAGGGTTATTTT
1 GGTAATTCTACCCTACAAGGG-TATTTC
* * * * *
61999602 GATAATTTTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61999629 GGTAATTCTACCCTACATGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61999656 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
61999683 GATAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61999710 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
61999737 AATATTTTAC
Statistics
Matches: 296, Mismatches: 51, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
26 6 0.02
27 284 0.96
28 6 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:61999494 original size:81 final size:81
Alignment explanation
Indices: 61999361--61999740 Score: 415
Period size: 81 Copynumber: 4.7 Consensus size: 81
61999351 GGCAAAATGG
* * * * ** *
61999361 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTAC-AGGAGTATTTCGGTATTTCTACC
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTCAATAATTCTACC
* *
61999425 CTACAAGGGTATCTCGG
65 CTACAAGGGTATTTCGA
* * * * * * *
61999442 TAATTCTACCCTACATGAGTATTTCGGCATTTCTACCCTACAAGGGTATTTCGATAATTCTACCT
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCC
* *
61999507 TACAGGGGTATTTCAA
66 TACAAGGGTATTTCGA
* * * *
61999523 TAATTCTACCATACAGGGGTATTTCGGTAATTCTACCTTA-TAGGGTTATTTCAATAATTCTACC
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGG-TATTTCAATAATTCTACC
* * *
61999587 GTA-TAGGGTTATTTTGA
65 CTACAAGGG-TATTTCGA
* * * * *
61999604 TAATTTTACCCTATAGGGGTATTTTGGTAATTCTACCCTACATGGTTATTTCAGTAATTCTACCC
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCC
*
61999669 TACAGGGGTATTTCGA
66 TACAAGGGTATTTCGA
* *
61999685 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAATA
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATA
61999741 TTTTACAAAT
Statistics
Matches: 247, Mismatches: 47, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
80 7 0.03
81 232 0.94
82 8 0.03
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.37
Consensus pattern (81 bp):
TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCC
TACAAGGGTATTTCGA
Found at i:61999824 original size:27 final size:26
Alignment explanation
Indices: 61999759--61999930 Score: 150
Period size: 27 Copynumber: 6.4 Consensus size: 26
61999749 ATCGAGAGTG
* * *
61999759 TTTTGATAATTTCAAAAATCAGGGGTA
1 TTTTGGTAATTT-TAAAACCAGGGGTA
*
61999786 -TTTGGTATTTTTAAAAGCCAGGGGTA
1 TTTTGGTAATTTTAAAA-CCAGGGGTA
61999812 TTTTGGTAATTTTACAAACCAGGGGTA
1 TTTTGGTAATTTTA-AAACCAGGGGTA
* *
61999839 TTTTAGTAATTTTTCAAACCAGGGGTA
1 TTTTGGTAA-TTTTAAAACCAGGGGTA
** *
61999866 TTTTGGTAATTTTACTGATC-GAGGGTA
1 TTTTGGTAATTTTA-AAACCAG-GGGTA
* **
61999893 TTTTGGTAATTTTGTAAACCAAAGGTA
1 TTTTGGTAATTTT-AAAACCAGGGGTA
*
61999920 TTTTAGTAATT
1 TTTTGGTAATT
61999931 CTATAAATCG
Statistics
Matches: 118, Mismatches: 19, Indels: 16
0.77 0.12 0.10
Matches are distributed among these distances:
25 4 0.03
26 22 0.19
27 85 0.72
28 7 0.06
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (26 bp):
TTTTGGTAATTTTAAAACCAGGGGTA
Found at i:61999873 original size:54 final size:53
Alignment explanation
Indices: 61999759--61999944 Score: 189
Period size: 54 Copynumber: 3.5 Consensus size: 53
61999749 ATCGAGAGTG
* * *
61999759 TTTTGATAATTTCAAAAATCAGGGGTA-TTTGGT-ATTTTTAAAAGCCAGGGGTA
1 TTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTT-AAA-CCAGGGGTA
* *
61999812 TTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTTCAAACCAGGGGTA
1 TTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTT-AAACCAGGGGTA
** **
61999866 TTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAACCAAAGGTA
1 TTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTT-TAAACCAGGGGTA
* * *
61999920 TTTTAGTAATTCTATAAATCGAGGG
1 TTTTGGTAATTTTACAAATC-AGGG
61999945 TAAAATAGTA
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
53 24 0.22
54 73 0.66
55 12 0.11
56 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (53 bp):
TTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTTAAACCAGGGGTA
Found at i:61999953 original size:27 final size:27
Alignment explanation
Indices: 61999925--62000192 Score: 428
Period size: 27 Copynumber: 9.9 Consensus size: 27
61999915 AGGTATTTTA
*
61999925 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
61999952 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
61999979 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
62000006 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
62000033 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
62000060 GTAATTCTATAAATCGAAGGTAAACTG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
62000087 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
62000114 GTAATTCTATAAATTGAGGGTAAACTG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
62000141 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
62000168 GTAATTCTATGAATCGAAGGTAAAA
1 GTAATTCTATAAATCGAGGGTAAAA
62000193 CAATAATTTT
Statistics
Matches: 221, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 221 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:61999956 original size:81 final size:79
Alignment explanation
Indices: 61999871--62000192 Score: 286
Period size: 81 Copynumber: 4.0 Consensus size: 79
61999861 GGGTATTTTG
* *** * * **
61999871 GTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTAGTAATTCTATA
1 GTAATTTTA-TAATCGAGGGTAAAATGGTAATTCTATAAACCAAAGGTAAATTAGTAATTCTATA
61999936 AATCGAGGGTAAAAT
65 AATCGAGGGTAAAAT
* * * * * *
61999951 AGTAATTCTGTA-AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
1 -GTAATT-T-TATAATCGAGGGTAAAATGGTAATTCTATAAACCAAAGGTAAATTAGTAATTCTA
62000015 TAAATCGAGGGTAAAAT
63 TAAATCGAGGGTAAAAT
* * * * *
62000032 GATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAACTGGTAATTCTAT
1 G-TAATTTTAT-AATCGAGGGTAAAATGGTAATTCTATAAACCAAAGGTAAATTAGTAATTCTAT
*
62000097 AAATCGAGGGTAAAACG
64 AAATCGAGGGTAAAA-T
* * * * * * *** *
62000114 GTAATTCTATAAATTGAGGGTAAACTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATG
1 GTAATTTTAT-AATCGAGGGTAAAATGGTAATTCTATAAACCAAAGGTAAATTAGTAATTCTATA
*
62000179 AATCGAAGGTAAAA
65 AATCGAGGGTAAAA
62000193 CAATAATTTT
Statistics
Matches: 209, Mismatches: 26, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
79 2 0.01
80 1 0.00
81 202 0.97
82 2 0.01
83 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.31
Consensus pattern (79 bp):
GTAATTTTATAATCGAGGGTAAAATGGTAATTCTATAAACCAAAGGTAAATTAGTAATTCTATAA
ATCGAGGGTAAAAT
Found at i:62004416 original size:93 final size:93
Alignment explanation
Indices: 62004303--62004474 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
62004293 CGCCCATAAG
*
62004303 CGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
62004367 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
62004396 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
62004461 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
62004475 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:62004469 original size:46 final size:46
Alignment explanation
Indices: 62004296--62004471 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
62004286 TGTAACCCGC
* * *
62004296 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
62004342 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
62004392 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
62004435 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
62004472 TGCTCAATCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62011515 original size:93 final size:93
Alignment explanation
Indices: 62011403--62011574 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
62011393 CGCCCATAAG
*
62011403 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
62011467 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
62011496 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
62011561 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
62011575 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:62011569 original size:46 final size:46
Alignment explanation
Indices: 62011396--62011571 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
62011386 TGTAACCCGC
* *
62011396 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
62011442 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
62011492 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
62011535 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
62011572 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62012587 original size:55 final size:56
Alignment explanation
Indices: 62012522--62012636 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
62012512 AGCATGGCTG
* *
62012522 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
62012578 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
62012633 CCAG
1 CCAG
62012637 GATGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:62012599 original size:27 final size:27
Alignment explanation
Indices: 62012547--62012636 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
62012537 GTGACAGAGT
62012547 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
62012576 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
62012603 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
62012631 CACCAG
1 CACCAG
62012637 GATGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:62012789 original size:28 final size:28
Alignment explanation
Indices: 62012758--62012835 Score: 156
Period size: 28 Copynumber: 2.8 Consensus size: 28
62012748 TACAAAGGTC
62012758 ATTTTGCATACATAGGGGTATAATGGTA
1 ATTTTGCATACATAGGGGTATAATGGTA
62012786 ATTTTGCATACATAGGGGTATAATGGTA
1 ATTTTGCATACATAGGGGTATAATGGTA
62012814 ATTTTGCATACATAGGGGTATA
1 ATTTTGCATACATAGGGGTATA
62012836 CTAGTACATC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (28 bp):
ATTTTGCATACATAGGGGTATAATGGTA
Found at i:62014668 original size:23 final size:23
Alignment explanation
Indices: 62014596--62014656 Score: 113
Period size: 23 Copynumber: 2.7 Consensus size: 23
62014586 CTCATATGAT
*
62014596 CTTACTGTTTCACCTCTCCTAGG
1 CTTACCGTTTCACCTCTCCTAGG
62014619 CTTACCGTTTCACCTCTCCTAGG
1 CTTACCGTTTCACCTCTCCTAGG
62014642 CTTACCGTTTCACCT
1 CTTACCGTTTCACCT
62014657 TTACAGAGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.13, C:0.38, G:0.11, T:0.38
Consensus pattern (23 bp):
CTTACCGTTTCACCTCTCCTAGG
Found at i:62014673 original size:23 final size:22
Alignment explanation
Indices: 62014596--62014692 Score: 74
Period size: 23 Copynumber: 4.3 Consensus size: 22
62014586 CTCATATGAT
* *
62014596 CTTACTGTTTCACCTCTCCTAG-G
1 CTTACCGTTTCACCT-TTC-AGAG
*
62014619 CTTACCGTTTCACCTCTCCTAG-G
1 CTTACCGTTTCACCT-TTC-AGAG
62014642 CTTACCGTTTCACCTTTACAGAG
1 CTTACCGTTTCACCTTT-CAGAG
* *
62014665 CTTATCGTTT-AGCTCTTCAGAG
1 CTTACCGTTTCACCT-TTCAGAG
62014687 CTTACC
1 CTTACC
62014693 ATTTATTAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
22 16 0.24
23 50 0.76
ACGTcount: A:0.16, C:0.33, G:0.13, T:0.37
Consensus pattern (22 bp):
CTTACCGTTTCACCTTTCAGAG
Found at i:62017095 original size:27 final size:27
Alignment explanation
Indices: 62017055--62017130 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
62017045 CAATATCGCA
* *
62017055 GCAAAGCTATCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* * *
62017082 GCAAAGCCACCAGTATCAGCATATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
*
62017109 GCAAAGCCACCAGTAATAGTAA
1 GCAAAGCCACCAGTAACAGTAA
62017131 TTACGTGGCA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTAAATGTG
Found at i:62020010 original size:49 final size:49
Alignment explanation
Indices: 62019934--62020218 Score: 351
Period size: 49 Copynumber: 5.8 Consensus size: 49
62019924 TGAGGTAACG
*
62019934 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACA
*
62019983 TGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACA
* ** * * **
62020032 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAACTTCGATCAGG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCACA
* * * *
62020083 TGTGTAGTAATAAGTGCAGGCTAGTA-GTGTATCAGA-AGATTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA-ATT-GGTCACA
*
62020132 TGTGTAGTACT-AGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACA
* * * *
62020180 TGTGTAGTACTAACTGTAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
62020219 GCCTTGGCTA
Statistics
Matches: 202, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
48 29 0.14
49 135 0.67
50 10 0.05
51 28 0.14
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACA
Found at i:62020202 original size:148 final size:149
Alignment explanation
Indices: 62019933--62020218 Score: 434
Period size: 148 Copynumber: 1.9 Consensus size: 149
62019923 GTGAGGTAAC
* *
62019933 GTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTTTAGTACTAAGT
1 GTGTGTAGTAATAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
*
62019998 GCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCAT
66 GCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAACTGCAGGCTACTATGCAT
*
62020063 ACCTGATAACTTCGATCAG
131 ACCAGATAACTTCGATCAG
* * * *
62020082 GTGTGTAGTAATAAGTGCAGGCTAGTA-GTGTATCAGA-AGATTAGGTCACGTGTGTAGTACT-A
1 GTGTGTAGTAATAAGTGCAAGCTACTACGTGTACCAGATA-ATT-GGTCACATGTGTAGTACTAA
* *
62020144 GTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAACTGTAGGCTACTATGC
64 GTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAACTGCAGGCTACTATGC
*
62020209 GTACCAGATA
129 ATACCAGATA
62020219 GCCTTGGCTA
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
147 1 0.01
148 83 0.67
149 40 0.32
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (149 bp):
GTGTGTAGTAATAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAACTGCAGGCTACTATGCAT
ACCAGATAACTTCGATCAG
Found at i:62023346 original size:30 final size:30
Alignment explanation
Indices: 62023310--62023366 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
62023300 TATCGTATCT
* * *
62023310 TGGGTTTCTTTATTTTGGATTTTTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
62023340 TGGGTTTCTCTATCTTGGATTTCTTTA
1 TGGGTTTCTCTATCTTGGATTTCTTTA
62023367 CTTGGTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.11, C:0.11, G:0.18, T:0.61
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:62023376 original size:14 final size:15
Alignment explanation
Indices: 62023305--62023378 Score: 71
Period size: 15 Copynumber: 5.0 Consensus size: 15
62023295 TATAGTATCG
62023305 TATCTTGGGTTTCTT
1 TATCTTGGGTTTCTT
* * *
62023320 TATTTTGGATTTTTT
1 TATCTTGGGTTTCTT
*
62023335 TAT-TCTGGGTTTCTC
1 TATCT-TGGGTTTCTT
*
62023350 TATCTTGGATTTCTT
1 TATCTTGGGTTTCTT
*
62023365 TA-CTTGGTTTTCTT
1 TATCTTGGGTTTCTT
62023379 GTTATCTTTA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
14 12 0.25
15 35 0.73
16 1 0.02
ACGTcount: A:0.09, C:0.12, G:0.16, T:0.62
Consensus pattern (15 bp):
TATCTTGGGTTTCTT
Found at i:62025758 original size:42 final size:43
Alignment explanation
Indices: 62025660--62025816 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
62025650 ACCAATTACA
* * * *
62025660 ATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCAATATCG
** *
62025703 ATGCCTCTGTCCCAGATATGGTCTTACATG-AAATCAGATAT-G
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCA-ATATCG
*
62025745 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAA--TCAATATCG
* *
62025789 AAGCCTG-TGTCCCAGACACGGTCTTACA
1 ATGCC-GATGTCCCAGACATGGTCTTACA
62025817 CGATATCTCA
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 32 0.34
43 33 0.35
44 26 0.27
45 4 0.04
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCAATATCG
Found at i:62025815 original size:86 final size:85
Alignment explanation
Indices: 62025660--62025816 Score: 217
Period size: 86 Copynumber: 1.8 Consensus size: 85
62025650 ACCAATTACA
* * * * * *
62025660 ATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATATGGT
1 ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGAAGCCTCTGTCCCAGACACGGT
62025725 CTTACATGAAATCAGATATG
66 CTTACATGAAATCAGATATG
* *
62025745 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGAAGCCTGTGTCCCAGACACG
1 ATGCCGACGTCCCAGACATGGTCTTACACGT-AAT-TCAATATCGAAGCCTCTGTCCCAGACACG
62025809 GTCTTACA
64 GTCTTACA
62025817 CGATATCTCA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 27 0.44
86 31 0.50
87 4 0.06
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGAAGCCTCTGTCCCAGACACGGT
CTTACATGAAATCAGATATG
Found at i:62033182 original size:47 final size:47
Alignment explanation
Indices: 62033119--62033417 Score: 413
Period size: 47 Copynumber: 6.3 Consensus size: 47
62033109 CCCTTCGGGA
* * * *
62033119 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGT
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
62033166 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
62033213 CTTATCTCATATATGCATGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
62033260 CTTTTCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
62033307 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
62033354 CTTATCACACATACACATGTTCACATTCATCGCATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
62033401 CTTATCACGCATATATA
1 CTTATCA--CATATATA
62033418 TACTTTCACA
Statistics
Matches: 232, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 225 0.97
49 6 0.03
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:62037666 original size:24 final size:24
Alignment explanation
Indices: 62037635--62037680 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
62037625 AGGAAGTGAA
**
62037635 AAAGGGCTTTGCCTC-AGTTATTT
1 AAAGGGCTAGGCCTCTAGTTATTT
62037658 AAAGAGGCTAGGCCTCTAGTTAT
1 AAAG-GGCTAGGCCTCTAGTTAT
62037681 ATGATAAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 9 0.47
25 6 0.32
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (24 bp):
AAAGGGCTAGGCCTCTAGTTATTT
Found at i:62046583 original size:45 final size:45
Alignment explanation
Indices: 62046516--62046648 Score: 169
Period size: 45 Copynumber: 3.0 Consensus size: 45
62046506 GCCCGATATC
* * * *
62046516 ATTTCACCAGCATTATAGCCTGCTAGGCTTGAAGGCCCGAATAGT
1 ATTTCACCGGCATCATAACCTGCTAGGCTTAAAGGCCCGAATAGT
* * *
62046561 ATTTCACCGGCATCATAACCTGCTAGGCTCAAGGGTCCGAATAGT
1 ATTTCACCGGCATCATAACCTGCTAGGCTTAAAGGCCCGAATAGT
* *
62046606 ATTTCACCGGCATCA-AAGCCTGCTAGGCTCAAAGGCCTGAATA
1 ATTTCACCGGCATCATAA-CCTGCTAGGCTTAAAGGCCCGAATA
62046649 TTACTGTACG
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
44 2 0.03
45 75 0.97
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (45 bp):
ATTTCACCGGCATCATAACCTGCTAGGCTTAAAGGCCCGAATAGT
Found at i:62051373 original size:42 final size:43
Alignment explanation
Indices: 62051284--62051377 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
62051274 TCCCGAATGT
* ** * *
62051284 GGTCTTACATGCAATTCAATATCGATGCCTCTGTCCCAGATAT
1 GGTCTTACATGCAAATCAATATCGATGCCGATGTCCCAGACAC
62051327 GGTCTTACATG-AAATCAAATAT-GATGCCGATGTCCCAGACAC
1 GGTCTTACATGCAAATC-AATATCGATGCCGATGTCCCAGACAC
62051369 GGTCTTACA
1 GGTCTTACA
62051378 CGATATCTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 29 0.64
43 16 0.36
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGCAAATCAATATCGATGCCGATGTCCCAGACAC
Found at i:62052186 original size:6 final size:6
Alignment explanation
Indices: 62052163--62052266 Score: 61
Period size: 6 Copynumber: 16.8 Consensus size: 6
62052153 CATTGCAATG
* * *
62052163 AGAATC AAAATT AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * * *
62052212 AGAATT AG-GTGAC AAAATC AGAATC AGTATC AGGTAAT- AGAATT AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
62052262 AGAAT
1 AGAAT
62052267 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
5 5 0.07
6 59 0.80
7 6 0.08
8 4 0.05
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:62052198 original size:31 final size:31
Alignment explanation
Indices: 62052163--62052244 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
62052153 CATTGCAATG
*
62052163 AGAATCAAAATTAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTGAC
* *
62052194 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTGAC
* * *
62052225 AAAATCAGAATCAGTATCAG
1 AGAATCAAAATCAGAATCAG
62052245 GTAATAGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTGAC
Found at i:62052209 original size:25 final size:25
Alignment explanation
Indices: 62052175--62052266 Score: 85
Period size: 25 Copynumber: 3.4 Consensus size: 25
62052165 AATCAAAATT
62052175 AGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGGTGACAGAATC
*
62052200 AGAATCAGAATCAGAATTAGGTGACAAAATC
1 AGAATCAGAATC------AGGTGACAGAATC
* * * *
62052231 AGAATCAGTATCAGGTAATAGAATT
1 AGAATCAGAATCAGGTGACAGAATC
62052256 AGAATCAGAAT
1 AGAATCAGAAT
62052267 GTGAATGCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
25 31 0.57
31 23 0.43
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGGTGACAGAATC
Found at i:62052433 original size:27 final size:26
Alignment explanation
Indices: 62052402--62052491 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 26
62052392 AATATTGCGA
* *
62052402 CAGAGTCACCAGATACAGATACTGTGG
1 CAGAGCCACCAGA-ACAGATAATGTGG
* *
62052429 CAGAGCCACCAAAACAGATATTTGTGG
1 CAGAGCCACCAGAACAGATA-ATGTGG
*
62052456 CATAGCCACCAGAATCAGATAATGTGG
1 CAGAGCCACCAGAA-CAGATAATGTGG
*
62052483 CAAAGCCAC
1 CAGAGCCAC
62052492 TTAACAGAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.13
27 41 0.76
28 6 0.11
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (26 bp):
CAGAGCCACCAGAACAGATAATGTGG
Found at i:62052772 original size:20 final size:20
Alignment explanation
Indices: 62052732--62052772 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
62052722 AATCGGTACG
* *
62052732 AAGCCCACAATATCGATACA
1 AAGCCCACAATAACGACACA
*
62052752 AAGCCCACAATAACGGCACA
1 AAGCCCACAATAACGACACA
62052772 A
1 A
62052773 GCCTTCGGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.32, G:0.12, T:0.10
Consensus pattern (20 bp):
AAGCCCACAATAACGACACA
Found at i:62053275 original size:27 final size:27
Alignment explanation
Indices: 62053053--62053267 Score: 250
Period size: 27 Copynumber: 8.0 Consensus size: 27
62053043 GGGGCAAAAT
* * *
62053053 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
62053080 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
62053107 GGTATTTCTACCCTACAAGGATATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
62053134 GGTAATTCTATCGTACAAAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
62053161 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
62053188 AGTAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
62053215 GGTATTTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
62053242 GGTAATTCTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
62053268 TAATAATTTT
Statistics
Matches: 156, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:62053289 original size:27 final size:27
Alignment explanation
Indices: 62053259--62053443 Score: 138
Period size: 27 Copynumber: 6.9 Consensus size: 27
62053249 CTACCCTACA
**
62053259 AGGGTATTTTAATAATTTTGTAAATTG
1 AGGGTATTTTAATAATTTTACAAATTG
*** * * **
62053286 AGGGTAAAATGATAATTCTGTAAATTG
1 AGGGTATTTTAATAATTTTACAAATTG
* * * * *
62053313 GGGGTACTTTGATAATTTTACAAGTCG
1 AGGGTATTTTAATAATTTTACAAATTG
* * * *
62053340 AGGGTATTTCAGTAATTTTATAAATCG
1 AGGGTATTTTAATAATTTTACAAATTG
* * * *
62053367 AGGGTATTTCAGTAATTTTGCAAACTG
1 AGGGTATTTTAATAATTTTACAAATTG
* *
62053394 AGGGTATTTCAGTAATTTTACAAATTG
1 AGGGTATTTTAATAATTTTACAAATTG
62053421 AGGGTATTTTAGA-AATTTTACAA
1 AGGGTATTTTA-ATAATTTTACAA
62053444 TCGATGATAT
Statistics
Matches: 128, Mismatches: 29, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTAATAATTTTACAAATTG
Found at i:62053356 original size:54 final size:52
Alignment explanation
Indices: 62053306--62053493 Score: 198
Period size: 54 Copynumber: 3.5 Consensus size: 52
62053296 GATAATTCTG
*
62053306 TAAATTGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTA
1 TAAATTGAGGGTA-TTTGATAATTTTACAA-TCGAGGGTATTTCAGTAATTTTA
* * * *
62053360 TAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCAGTAATTTTA
1 TAAATTGAGGGTATTTGA-TAATTTTACAATC-GAGGGTATTTCAGTAATTTTA
* * * *
62053414 CAAATTGAGGGTATTTTAGA-AATTTTACAATCGATGATATTTCGGTAATTTTA
1 TAAATTGAGGGTA-TTT-GATAATTTTACAATCGAGGGTATTTCAGTAATTTTA
* * *
62053467 TAAATCGAAGGTATTTGGGTAATTTTA
1 TAAATTGAGGGTATTT-GATAATTTTA
62053494 TAAACCGGGG
Statistics
Matches: 111, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
52 4 0.04
53 40 0.36
54 63 0.57
55 3 0.03
56 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.40
Consensus pattern (52 bp):
TAAATTGAGGGTATTTGATAATTTTACAATCGAGGGTATTTCAGTAATTTTA
Found at i:62053383 original size:81 final size:80
Alignment explanation
Indices: 62053298--62053463 Score: 190
Period size: 81 Copynumber: 2.1 Consensus size: 80
62053288 GGTAAAATGA
* * * * * *
62053298 TAATTCTGTAAATTGGGGGTACTTTGA-TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTATA
1 TAATTCTGCAAACTGAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCAGAAATTTTA-A
*
62053362 AATCGAGGGTATTTCAG
64 AATCGAGGATATTTCAG
* * * *
62053379 TAATTTTGCAAACTGAGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTTAGAAATTTTACAA
1 TAATTCTGCAAACTGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGAAATTTTAAAA
* *
62053444 TCGATGATATTTCGG
66 TCGAGGATATTTCAG
62053459 TAATT
1 TAATT
62053464 TTATAAATCG
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 23 0.32
81 48 0.68
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (80 bp):
TAATTCTGCAAACTGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGAAATTTTAAAA
TCGAGGATATTTCAG
Found at i:62053481 original size:27 final size:27
Alignment explanation
Indices: 62053325--62053544 Score: 214
Period size: 27 Copynumber: 8.2 Consensus size: 27
62053315 GGTACTTTGA
*
62053325 TAATTTTACAAGTCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
*
62053352 TAATTTTATAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
*
62053379 TAATTTTGCAAA-CTGAGGGTATTTCAG
1 TAATTTTACAAATC-GAGGGTATTTCAG
* *
62053406 TAATTTTACAAATTGAGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * * *
62053433 AAATTTTAC-AATCGATGATATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * **
62053459 TAATTTTATAAATCGAAGGTATTTGGG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * * *
62053486 TAATTTTATAAACCGGGGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTCAG
* * *
62053513 TAATTTTACAACT-GGGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTCAG
62053539 TAATTT
1 TAATTT
62053545 AGTAGACTAA
Statistics
Matches: 163, Mismatches: 25, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
25 3 0.02
26 34 0.21
27 123 0.75
28 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCAG
Found at i:62053506 original size:80 final size:80
Alignment explanation
Indices: 62053325--62053523 Score: 202
Period size: 80 Copynumber: 2.5 Consensus size: 80
62053315 GGTACTTTGA
** * * * *
62053325 TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCAGTAATTTTGCAA
1 TAATTTTACAAACCGAGGGTATTTTAGTAATTTTA-CAATCGAGGATATTTCAGTAATTTTACAA
*
62053390 ACTGAGGGTATTTCAG
65 ACTGAAGGTATTTCAG
** * * * *
62053406 TAATTTTACAAATTGAGGGTATTTTAGAAATTTTACAATCGATGATATTTCGGTAATTTTATAAA
1 TAATTTTACAAACCGAGGGTATTTTAGTAATTTTACAATCGAGGATATTTCAGTAATTTTACAAA
**
62053471 -TCGAAGGTATTTGGG
66 CT-GAAGGTATTTCAG
* * * *
62053486 TAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAA
1 TAATTTTACAAACCGAGGGTATTTTAGTAATTTTACAA
62053524 CTGGGGGTAT
Statistics
Matches: 97, Mismatches: 20, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
79 1 0.01
80 65 0.67
81 31 0.32
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
TAATTTTACAAACCGAGGGTATTTTAGTAATTTTACAATCGAGGATATTTCAGTAATTTTACAAA
CTGAAGGTATTTCAG
Found at i:62058357 original size:79 final size:81
Alignment explanation
Indices: 62058255--62058439 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
62058245 GCTCCTCGTT
* * *
62058255 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAAGGCCTT-GGGATCTTAACCC
* *
62058318 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* * **
62058335 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAAGGCCTTTGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAGGCCTTGGGATCTTAACCCGG
* *
62058399 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
62058415 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62058440 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAGGCCTTGGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:62058439 original size:40 final size:40
Alignment explanation
Indices: 62058255--62058439 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
62058245 GCTCCTCGTT
* *
62058255 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62058295 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
62058335 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * * *
62058374 CAAAGGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
62058415 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62058440 CATCATTCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:62066039 original size:79 final size:81
Alignment explanation
Indices: 62065937--62066121 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
62065927 GCTCCTCGTT
* *
62065937 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
62066000 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
62066017 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
62066081 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
62066097 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62066122 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:62066121 original size:40 final size:40
Alignment explanation
Indices: 62065937--62066121 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
62065927 GCTCCTCGTT
* *
62065937 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62065977 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
62066017 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
62066056 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
62066097 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62066122 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:62067929 original size:49 final size:49
Alignment explanation
Indices: 62067856--62068029 Score: 240
Period size: 49 Copynumber: 3.5 Consensus size: 49
62067846 TGAGGTCACG
*
62067856 TGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * *** * *
62067905 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACGGTTAGGTCACC
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
* * *
62067955 TGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
62068004 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
62068030 TGCACACCAG
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 66 0.63
50 39 0.37
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:62068019 original size:99 final size:99
Alignment explanation
Indices: 62067848--62068029 Score: 319
Period size: 99 Copynumber: 1.8 Consensus size: 99
62067838 ATCTATTGTG
* * *
62067848 AGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACCTGTGTAGTACTAAGTGCAGACTACTACATGTACCGAATAATTGGTCGCATGTGTAGT
62067913 ACTAAGTGCAGGCTACTACGTGTATCAGACGGTT
66 ACTAAGTGCAGGCTACTACGTGTATCAGACGGTT
* *
62067947 AGGTCACCTGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCATGTGTAGT
1 AGGTCACCTGTGTAGTACTAAGTGCAGACTACTACATGTACCGAATAATTGGTCGCATGTGTAGT
62068012 ACTAAGTGCAGGCTACTA
66 ACTAAGTGCAGGCTACTA
62068030 TGCACACCAG
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 78 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (99 bp):
AGGTCACCTGTGTAGTACTAAGTGCAGACTACTACATGTACCGAATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTACGTGTATCAGACGGTT
Found at i:62072411 original size:27 final size:25
Alignment explanation
Indices: 62072381--62072463 Score: 60
Period size: 27 Copynumber: 3.1 Consensus size: 25
62072371 ACACATATAT
62072381 ATATACCGCACATAGGGCAAAACAGTC
1 ATATACC-CA-ATAGGGCAAAACAGTC
* *
62072408 ATATTA-CCATATAAAGGCAAAACAATC
1 ATA-TACCCA-AT-AGGGCAAAACAGTC
* *
62072435 ATTTTACCTCAAAAGGGCAAAACAGTC
1 A-TATACC-CAATAGGGCAAAACAGTC
62072462 AT
1 AT
62072464 TTTACTACGT
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
26 5 0.11
27 32 0.73
28 5 0.11
29 2 0.05
ACGTcount: A:0.45, C:0.22, G:0.13, T:0.20
Consensus pattern (25 bp):
ATATACCCAATAGGGCAAAACAGTC
Found at i:62072464 original size:27 final size:27
Alignment explanation
Indices: 62072394--62072548 Score: 156
Period size: 27 Copynumber: 5.7 Consensus size: 27
62072384 TACCGCACAT
*
62072394 AGGGCAAAACAGTCATATTACCAT-ATAA
1 AGGGCAAAACAGTCATTTTACC-TCA-AA
*
62072422 A-GGCAAAACAATCATTTTACCTCAAA
1 AGGGCAAAACAGTCATTTTACCTCAAA
**
62072448 AGGGCAAAACAGTCATTTTA-CTACGTA
1 AGGGCAAAACAGTCATTTTACCT-CAAA
* * * *
62072475 TGGGCAAATCAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCTCAAA
* *
62072502 AGGGAAAAACAGTCATTTTACCACATAA
1 AGGGCAAAACAGTCATTTTACCTCA-AA
62072530 A-GGCAAAACAGTCATTTTA
1 AGGGCAAAACAGTCATTTTA
62072549 TCGACCTAAC
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.06
27 98 0.91
28 4 0.04
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCTCAAA
Found at i:62072481 original size:54 final size:54
Alignment explanation
Indices: 62072394--62072548 Score: 211
Period size: 54 Copynumber: 2.9 Consensus size: 54
62072384 TACCGCACAT
* * * *
62072394 AGGGCAAAACAGTCATATTACCATATAAAGGCAAAACAATCATTTTACCTCAAA
1 AGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTACCACAAA
* * ** * *
62072448 AGGGCAAAACAGTCATTTTACTACGTATGGGCAAATCAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTACCACAAA
*
62072502 AGGGAAAAACAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTA
1 AGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTA
62072549 TCGACCTAAC
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 85 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (54 bp):
AGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTACCACAAA
Found at i:62072535 original size:81 final size:81
Alignment explanation
Indices: 62072395--62072548 Score: 229
Period size: 81 Copynumber: 1.9 Consensus size: 81
62072385 ACCGCACATA
* * *
62072395 GGGCAAAACAGTCATATTACCATATAAAGGCAAAACAATCATTTTACCTCAAAAGGGCAAAACAG
1 GGGCAAAACAGTCATATTACCACATAAAGGAAAAACAATCATTTTACCACAAAAGGGCAAAACAG
62072460 TCATTTTACTACGTAT
66 TCATTTTACTACGTAT
* * * *
62072476 GGGCAAATCAGTCATTTTACCACATAAGGGAAAAACAGTCATTTTACCACATAAA-GGCAAAACA
1 GGGCAAAACAGTCATATTACCACATAAAGGAAAAACAATCATTTTACCACA-AAAGGGCAAAACA
62072540 GTCATTTTA
65 GTCATTTTA
62072549 TCGACCTAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
81 62 0.95
82 3 0.05
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (81 bp):
GGGCAAAACAGTCATATTACCACATAAAGGAAAAACAATCATTTTACCACAAAAGGGCAAAACAG
TCATTTTACTACGTAT
Found at i:62078048 original size:28 final size:28
Alignment explanation
Indices: 62078008--62078105 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62077998 AAACGAAATC
62078008 CGCACACACAGTGCCCACTGACCGATCT
1 CGCACACACAGTGCCCACTGACCGATCT
* * ** * **
62078036 CGCACACATAGTGCTCGGTTAAAGAAT-T
1 CGCACACACAGTGCCCACTGACCG-ATCT
62078064 CGCACACACAGTGCCCACTGACCGATCT
1 CGCACACACAGTGCCCACTGACCGATCT
*
62078092 CGCACACATAGTGC
1 CGCACACACAGTGC
62078106 TCGGTTAAAG
Statistics
Matches: 53, Mismatches: 15, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
27 2 0.04
28 49 0.92
29 2 0.04
ACGTcount: A:0.28, C:0.36, G:0.19, T:0.17
Consensus pattern (28 bp):
CGCACACACAGTGCCCACTGACCGATCT
Found at i:62078069 original size:56 final size:56
Alignment explanation
Indices: 62078008--62078134 Score: 245
Period size: 56 Copynumber: 2.3 Consensus size: 56
62077998 AAACGAAATC
62078008 CGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
62078064 CGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
*
62078120 CGCACACATAGTGCC
1 CGCACACACAGTGCC
62078135 TCAATTCATT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.19
Consensus pattern (56 bp):
CGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
Found at i:62078122 original size:28 final size:28
Alignment explanation
Indices: 62078035--62078133 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
62078025 CTGACCGATC
62078035 TCGCACACATAGTGCTCGGTTAAAGAAT
1 TCGCACACATAGTGCTCGGTTAAAGAAT
* * ** * **
62078063 TCGCACACACAGTGCCCACTGACCG-AT
1 TCGCACACATAGTGCTCGGTTAAAGAAT
62078090 CTCGCACACATAGTGCTCGGTTAAAGAAT
1 -TCGCACACATAGTGCTCGGTTAAAGAAT
62078119 TCGCACACATAGTGC
1 TCGCACACATAGTGC
62078134 CTCAATTCAT
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
27 2 0.04
28 51 0.93
29 2 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGGTTAAAGAAT
Found at i:62078151 original size:25 final size:25
Alignment explanation
Indices: 62078117--62078170 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
62078107 CGGTTAAAGA
62078117 ATTCGCACACATAGTGCCTCA-ATTC
1 ATTCGCACACATAGTGCCT-ATATTC
62078142 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACATAGTGCCTATATTC
62078167 ATTC
1 ATTC
62078171 ATTATTACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (25 bp):
ATTCGCACACATAGTGCCTATATTC
Found at i:62078356 original size:43 final size:43
Alignment explanation
Indices: 62078290--62078432 Score: 178
Period size: 43 Copynumber: 3.3 Consensus size: 43
62078280 CTTTGCTCGA
** * * *
62078290 ATCACCGGCATTAAGCCTTCTAGGCACGAAGACCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
62078333 ATCACCGGCACGAAGCCTGCTAGGAACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * * * * *
62078376 ATCACCAGTACAAAGCCTGCTAGGCATGAAGGCCTGATTACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
62078419 ATCACCGGCACGAA
1 ATCACCGGCACGAA
62078433 TGCCCTTCAG
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.34, C:0.31, G:0.21, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:62078486 original size:40 final size:40
Alignment explanation
Indices: 62078421--62078581 Score: 277
Period size: 40 Copynumber: 4.0 Consensus size: 40
62078411 GATTACACAT
* * * *
62078421 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
62078461 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
62078501 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
62078541 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
62078581 C
1 C
62078582 TCTCAATTCT
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 116 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.19
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:62090730 original size:47 final size:47
Alignment explanation
Indices: 62090606--62091175 Score: 917
Period size: 47 Copynumber: 11.9 Consensus size: 47
62090596 TAGTATGGCG
*
62090606 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
62090655 TAATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
62090701 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
62090748 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
62090797 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
62090846 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
62090893 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* *
62090942 TAATGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGACC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
62090989 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
62091038 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
62091085 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
62091132 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62091176 TCCCGAAGGG
Statistics
Matches: 493, Mismatches: 21, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 23 0.05
47 257 0.52
48 21 0.04
49 192 0.39
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:62090808 original size:96 final size:95
Alignment explanation
Indices: 62090606--62091175 Score: 939
Period size: 96 Copynumber: 6.0 Consensus size: 95
62090596 TAGTATGGCG
*
62090606 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
62090670 GAATGTGAAAGTGTATATATGTGACAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
62090701 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
62090765 AATGTGAAAGTGTATATATATGTGATAAGGCC
66 AATGTGAAAGTG--TATATATGTGATAAGGCC
62090797 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62090862 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
62090893 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
62090958 GAATGTGAAAGTGTATATATGTGATAAGACC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
62090989 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62091054 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
62091085 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62091149 GATGTGAAAGTGTATAAATGTGATAAG
66 AATGTGAAAGTGTATATATGTGATAAG
62091176 TCCCGAAGGG
Statistics
Matches: 452, Mismatches: 18, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
93 23 0.05
94 76 0.17
95 28 0.06
96 279 0.62
98 46 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (95 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:62092603 original size:40 final size:40
Alignment explanation
Indices: 62092557--62092939 Score: 516
Period size: 40 Copynumber: 9.6 Consensus size: 40
62092547 GAGTGAAATG
* * *
62092557 TCCGGGCTAAATGTCGAAGAGCATTCGTGCTAGTGATGTG
1 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
* *
62092597 TCCGGGCTAAATGTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
* * *
62092637 TCCGGACTAAGTTTTGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
* *
62092677 TCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
* *
62092717 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
* *
62092757 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
62092797 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
* *
62092837 TCCGGACTAAGT-TCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCT-CGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * * *
62092877 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
* *
62092917 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCTCGAAGAGCA
62092940 ATCATGCTGG
Statistics
Matches: 315, Mismatches: 26, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.00
40 314 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:62095820 original size:49 final size:49
Alignment explanation
Indices: 62095758--62096379 Score: 1063
Period size: 49 Copynumber: 12.9 Consensus size: 49
62095748 TAGTATGGCG
*
62095758 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62095807 TAATGGGCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62095856 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62095903 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62095952 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62096001 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62096048 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62096097 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATA--TGATAAGTCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62096144 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62096193 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62096242 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62096289 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * *
62096336 GAGTGGCCAACGTGAT-AGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGA-ATGTGAAAGTGTATATATATGTGATAAG
62096380 TCCCGAAGGG
Statistics
Matches: 551, Mismatches: 13, Indels: 20
0.94 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 235 0.43
48 1 0.00
49 314 0.57
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:62095924 original size:96 final size:97
Alignment explanation
Indices: 62095758--62096379 Score: 1039
Period size: 96 Copynumber: 6.5 Consensus size: 97
62095748 TAGTATGGCG
* *
62095758 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGGCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62095823 GAATGTGAAAGTGTATATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62095856 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
62095920 AATGTGAAAGTGTATATATATGTGATAAGGCC
66 AATGTGAAAGTGTATATATATGTGATAAGGCC
62095952 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62096017 GAATGTGAAAGTG--TATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATATGTGATAAGGCC
62096048 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
62096113 GAATGTGAAAGTGTATATATA--TGATAAGTCC
65 GAATGTGAAAGTGTATATATATGTGATAAGGCC
62096144 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62096209 GAATGTGAAAGTGTATATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATATGTGATAAGGCC
62096242 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62096306 AATGTGAAAGTG--TATATATGTGACAAGGCC
66 AATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
62096336 GAGTGGCCAACGTGAT-AGATGTGAAAGTG-TATAAATGTGATAAG
1 TAATGGCCGATGTGATGA-ATGTGAAAGTGATATATATGTGATAAG
62096380 TCCCGAAGGG
Statistics
Matches: 505, Mismatches: 12, Indels: 18
0.94 0.02 0.03
Matches are distributed among these distances:
93 1 0.00
94 54 0.11
96 332 0.66
98 118 0.23
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (97 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:62095941 original size:145 final size:145
Alignment explanation
Indices: 62095758--62096379 Score: 1087
Period size: 145 Copynumber: 4.3 Consensus size: 145
62095748 TAGTATGGCG
* *
62095758 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGGCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62095823 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62095888 ATATGTGATAAGGCC
131 ATATGTGATAAGGCC
*
62095903 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62095968 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62096033 ATATGTGATAAGGCC
131 ATATGTGATAAGGCC
62096048 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
62096113 GAATGTGAAAGTGTATATATA--TGATAAGTCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
62096176 ATATATGTGATAAGGCC
129 ATATATGTGATAAGGCC
62096193 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62096258 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
62096321 ATATGTGACAAGGCC
131 ATATGTGATAAGGCC
* * * *
62096336 GAGTGGCCAACGTGAT-AGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGA-ATGTGAAAGTGTATATATATGTGATAAG
62096380 TCCCGAAGGG
Statistics
Matches: 461, Mismatches: 11, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
141 10 0.02
142 2 0.00
143 88 0.19
145 361 0.78
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCC
Done.