Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 198 of 325
Found at i:62111619 original size:54 final size:54
Alignment explanation
Indices: 62111429--62111696 Score: 304
Period size: 54 Copynumber: 5.0 Consensus size: 54
62111419 TTTCCTTTTT
* * * ** * *
62111429 GAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* ** * *
62111483 -AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCCTTTCCTTATA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * * * * *
62111536 TTAACTTATCAATTCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATA
1 -GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * * *
62111591 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTTCTTGCCTTATA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* *
62111645 GAACTTAACAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTA
62111697 CCAAATGCCA
Statistics
Matches: 182, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
53 44 0.24
54 95 0.52
55 43 0.24
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (54 bp):
GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
Found at i:62111819 original size:47 final size:46
Alignment explanation
Indices: 62111653--62111877 Score: 177
Period size: 47 Copynumber: 4.8 Consensus size: 46
62111643 TAGAACTTAA
* * * * * *
62111653 CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-TTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGTCAATGC
** *
62111698 CAAATGCCATGT-TCCAATCATGGTCTTACATGGTATCCTTGTCTTAGTGC
1 C-AATGCCATGTCT-TGA-CATGGTCTTACATGGTATCCTTGTC--AATGC
** ** *
62111748 CAATGCCACATCTTGATGTGGTCTTACATGGAATCCTTAGTCAATGC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT-GTCAATGC
* * * ** *
62111795 CGATGCCATGTCTTGACATGGTCTTACAAGGGATCCTTG-CCTTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGTCAATGC
* *
62111840 CAATGCTATGTCTTGACATGGTCTTACATAGTATCCTT
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
62111878 AACCGTCAAT
Statistics
Matches: 141, Mismatches: 31, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
45 38 0.27
46 10 0.07
47 58 0.41
48 19 0.13
49 12 0.09
50 4 0.03
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (46 bp):
CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGTCAATGC
Found at i:62112543 original size:30 final size:30
Alignment explanation
Indices: 62112504--62112564 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
62112494 TCCCTAAATC
*
62112504 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACCTTTGCAAAATTACAATTTTGCCCCT
** *
62112534 AAACCTTTGCAAAATTATGATTTTGTCCCT
1 AAACCTTTGCAAAATTACAATTTTGCCCCT
62112564 A
1 A
62112565 GGCTCGGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACCTTTGCAAAATTACAATTTTGCCCCT
Found at i:62129102 original size:42 final size:41
Alignment explanation
Indices: 62129055--62129174 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 41
62129045 TACCGTACCA
* *
62129055 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-GTAATCTCATATCG
* * * * **
62129097 ATGCCAATAGCCCAGTTATGGTATTATACAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAGTAA-TCTCATATCG
*
62129140 ATGCCATATCCCAGGTATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACA-GTAATCT
62129175 TAGTAATCCT
Statistics
Matches: 61, Mismatches: 14, Indels: 6
0.75 0.17 0.07
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACAGTAATCTCATATCG
Found at i:62136304 original size:44 final size:44
Alignment explanation
Indices: 62136159--62136319 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 44
62136149 AAAGCTCATA
* * * *
62136159 CAATGCCAACATCCCAAACGTGGTCTTACATGT-AATCAATTA-T
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATC-ATAAGT
* **
62136202 CGATGCC-ACTGTCCCAGACAG-GGTCTTACA-AAAAATC--AAGT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAATCATAAGT
*
62136243 ACGATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGT
1 -CAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGT
62136288 CAATGCCAACGTCCCAGACGTGGTCTTACACG
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG
62136320 ATAACACATA
Statistics
Matches: 99, Mismatches: 9, Indels: 19
0.78 0.07 0.15
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 27 0.27
43 33 0.33
44 32 0.32
45 4 0.04
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (44 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGT
Found at i:62137473 original size:29 final size:29
Alignment explanation
Indices: 62137440--62137502 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
62137430 CAATCCACAT
62137440 ATTTTAAGCACAAAAAATAATATTTAAAA
1 ATTTTAAGCACAAAAAATAATATTTAAAA
62137469 ATTTTAAGCACAAAAAATAATATTTAAAA
1 ATTTTAAGCACAAAAAATAATATTTAAAA
62137498 ATTTT
1 ATTTT
62137503 TCTGACTCAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (29 bp):
ATTTTAAGCACAAAAAATAATATTTAAAA
Found at i:62141177 original size:27 final size:27
Alignment explanation
Indices: 62141147--62141324 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62141137 ATATTGAGTC
* * * *
62141147 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
62141174 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62141201 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62141229 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62141256 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62141283 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62141310 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62141325 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62141286 original size:82 final size:81
Alignment explanation
Indices: 62141168--62141323 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62141158 TGCTATATAA
* *
62141168 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62141233 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62141250 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62141314 CACTTAGTGC
65 CACTTAGTGC
62141324 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62149349 original size:27 final size:27
Alignment explanation
Indices: 62149319--62149496 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62149309 ATATTGAGTC
* * * *
62149319 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
62149346 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62149373 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62149401 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62149428 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62149455 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62149482 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62149497 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62149458 original size:82 final size:81
Alignment explanation
Indices: 62149340--62149495 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62149330 TGCTATATAA
* *
62149340 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62149405 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62149422 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62149486 CACTTAGTGC
65 CACTTAGTGC
62149496 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62158632 original size:6 final size:6
Alignment explanation
Indices: 62158623--62158667 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
62158613 GTTTAAAAAC
* * *
62158623 TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA CTTTTA TCTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
62158668 ATCTTAATTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:62166878 original size:27 final size:27
Alignment explanation
Indices: 62166838--62166902 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
62166828 AGGAAGCGTC
*
62166838 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
62166865 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
62166892 CTGGTGGCTCT
1 CTGGTGGCTCT
62166903 ACCATGATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:62166915 original size:27 final size:25
Alignment explanation
Indices: 62166857--62166949 Score: 80
Period size: 27 Copynumber: 3.5 Consensus size: 25
62166847 ATGCCACAAT
* *
62166857 TATCTGATCTGGTGGCTCTGCCACATA
1 TATCTGTTCTGGTGGCTCT-AC-CATA
62166884 TATCTGTTCTGGTGGCTCTACCATGA
1 TATCTGTTCTGGTGGCTCTACCAT-A
* *
62166910 TCATCTGTATCTAGTGACTCTATCACAT-
1 T-ATCTGT-TCTGGTGGCTCTA-C-CATA
62166938 TATCTGTTCTGG
1 TATCTGTTCTGG
62166950 CAGCCATGCT
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
25 3 0.05
26 7 0.12
27 30 0.54
28 12 0.21
29 1 0.02
30 3 0.05
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (25 bp):
TATCTGTTCTGGTGGCTCTACCATA
Found at i:62174230 original size:16 final size:15
Alignment explanation
Indices: 62174204--62174234 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
62174194 ACTAGATCGG
62174204 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
62174219 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
62174235 TGGTATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.26, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:62174669 original size:27 final size:26
Alignment explanation
Indices: 62174629--62174738 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 26
62174619 AAGCGTCATA
* *
62174629 GTGGCTATGGCACAATTATCTGA-TCTG
1 GTGGCTCTGCCAC-ATTATCT-ATTCTG
62174656 GTGGCTCTGCCACATATATCTATTCTG
1 GTGGCTCTGCCACAT-TATCTATTCTG
* * *
62174683 GTGGCTCTCCCACGATCATCTGTATCTG
1 GTGGCTCTGCCAC-ATTATCTAT-TCTG
* *
62174711 GTGACTCTGTCACATTATCTATTCTG
1 GTGGCTCTGCCACATTATCTATTCTG
62174737 GT
1 GT
62174739 AGCCATGCTG
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
26 9 0.13
27 44 0.64
28 16 0.23
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTATTCTG
Found at i:62176373 original size:55 final size:55
Alignment explanation
Indices: 62176302--62176419 Score: 227
Period size: 55 Copynumber: 2.1 Consensus size: 55
62176292 CCCAAAATGC
62176302 CACACGGCTAAAGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
1 CACACGGCTAAAGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
*
62176357 CACACGGCTAAGGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
1 CACACGGCTAAAGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
62176412 CACACGGC
1 CACACGGC
62176420 CGTGTCTCTA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.25, C:0.34, G:0.25, T:0.17
Consensus pattern (55 bp):
CACACGGCTAAAGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
Found at i:62177913 original size:29 final size:29
Alignment explanation
Indices: 62177846--62177941 Score: 149
Period size: 29 Copynumber: 3.3 Consensus size: 29
62177836 AAGTCTACAT
* *
62177846 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
62177874 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
62177903 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
62177932 ACATTCATAT
1 ACATTCATAT
62177942 ACATGCTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 21 0.34
29 40 0.66
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:62180160 original size:46 final size:48
Alignment explanation
Indices: 62180030--62180247 Score: 168
Period size: 47 Copynumber: 4.6 Consensus size: 48
62180020 GCCTCAAACG
* ** * * * *
62180030 TGCCATGTCCCAAACACAGTCTTACACTA--ATTCATATCTTATGTTGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGTA-GCTGA
62180077 TGCCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTCGTAGCTGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCAC--TCATCTCGTAGCTGA
* *
62180125 TG-CATGTCCTAGACAT-GTCTTACACTAGCACTCATCTCG-ATGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGTA-GCTGA
* * * * * *
62180171 TGCCGTGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGGTGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCACTCAT-CTCGTAGCTGA
* *
62180219 T-ACATGTCCCAAACAT-GTCTTACACTAGC
1 TGCCATGTCCCAGACATGGTCTTACACTAGC
62180248 CCACAATAAC
Statistics
Matches: 140, Mismatches: 21, Indels: 21
0.77 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 36 0.26
47 64 0.46
48 30 0.21
49 9 0.06
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGTAGCTGA
Found at i:62180194 original size:94 final size:94
Alignment explanation
Indices: 62180075--62180247 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
62180065 ATCTTATGTT
* * * *
62180075 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-CTCGTAGCTGATGCATGTCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATAAT-GTAGCTGATACATGTCCCAAAC
62180139 ATGTCTTACACTAGCACTCATCTCGATGCC
65 ATGTCTTACACTAGCACTCATCTCGATGCC
* * * * *
62180169 GATGCCGTGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGGTGATACATGTCCCAAACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATAATGTAGCTGATACATGTCCCAAACA
62180234 TGTCTTACACTAGC
66 TGTCTTACACTAGC
62180248 CCACAATAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
94 68 0.99
95 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATAATGTAGCTGATACATGTCCCAAACA
TGTCTTACACTAGCACTCATCTCGATGCC
Found at i:62180207 original size:48 final size:48
Alignment explanation
Indices: 62180075--62180207 Score: 173
Period size: 46 Copynumber: 2.8 Consensus size: 48
62180065 ATCTTATGTT
* * *
62180075 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGTAGCC
* * *
62180123 GATG-CATGTCCTAGACAT-GTCTTACACTAGCACTCATCTCG-ATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGTA-GCC
*
62180169 GATGCCGTGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
62180208 AATGTGGGTG
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 25 0.35
47 25 0.35
48 21 0.29
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGTAGCC
Found at i:62191247 original size:40 final size:40
Alignment explanation
Indices: 62191203--62191283 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
62191193 TTTACCTTAC
62191203 ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
1 ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
62191243 ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
1 ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
62191283 A
1 A
62191284 ACGGCATAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (40 bp):
ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
Found at i:62194362 original size:46 final size:45
Alignment explanation
Indices: 62194320--62194492 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
62194310 CATCTCGTAA
62194320 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGAGG
* *
62194366 CCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC-TTCGTCTCGAGG
* * * * *
62194412 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGAGG
* *
62194460 CTGATGCATGTCCCAGACATGTCTTACAGTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
62194493 CCACAATAAC
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
46 58 0.53
47 29 0.27
48 21 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGAGG
Found at i:62202114 original size:42 final size:43
Alignment explanation
Indices: 62202004--62202115 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 43
62201994 GCTCGTACAA
* * * * *
62202004 TGCCAACATCCTAGACGTGGTCTTACATGTAATCAATTATCGT
1 TGCCAATATCCCAAACGTGGTCTTACATGAAATCAAGTATCGT
* *
62202047 TGCCACTATCCCAGACAG-GGTCTTACATGAAATCAAGTA-CGAT
1 TGCCAATATCCCAAAC-GTGGTCTTACATGAAATCAAGTATCG-T
*
62202090 T-CCAATGTCCCAAACGTGGTCTTACA
1 TGCCAATATCCCAAACGTGGTCTTACA
62202116 CATAAATCAT
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
41 1 0.02
42 22 0.38
43 34 0.59
44 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
TGCCAATATCCCAAACGTGGTCTTACATGAAATCAAGTATCGT
Found at i:62209217 original size:169 final size:169
Alignment explanation
Indices: 62208938--62209276 Score: 669
Period size: 169 Copynumber: 2.0 Consensus size: 169
62208928 TCTGATTCTT
62208938 TTTTGTGGCAAATTTTACCTTTCCAAGGACTTTCATGGTTTAGTTAACACTTAAAGCATACATGT
1 TTTTGTGGCAAATTTTACCTTTCCAAGGACTTTCATGGTTTAGTTAACACTTAAAGCATACATGT
62209003 TATCATATATAAACTTGATTAGTCATTCCAATAGCTAATCATTCTCAAACATTTCCATTTCATCC
66 TATCATATATAAACTTGATTAGTCATTCCAATAGCTAATCATTCTCAAACATTTCCATTTCATCC
62209068 ATGGCCATAACTAAGATTATACACACAAAATCATTGGAA
131 ATGGCCATAACTAAGATTATACACACAAAATCATTGGAA
*
62209107 TTTTGTGGCAAATTTTACCTTTCCAAGGACTTTCATGGTTTAGTTAAGACTTAAAGCATACATGT
1 TTTTGTGGCAAATTTTACCTTTCCAAGGACTTTCATGGTTTAGTTAACACTTAAAGCATACATGT
62209172 TATCATATATAAACTTGATTAGTCATTCCAATAGCTAATCATTCTCAAACATTTCCATTTCATCC
66 TATCATATATAAACTTGATTAGTCATTCCAATAGCTAATCATTCTCAAACATTTCCATTTCATCC
62209237 ATGGCCATAACTAAGATTATACACACAAAATCATTGGAA
131 ATGGCCATAACTAAGATTATACACACAAAATCATTGGAA
62209276 T
1 T
62209277 GCTATACATG
Statistics
Matches: 169, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 169 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (169 bp):
TTTTGTGGCAAATTTTACCTTTCCAAGGACTTTCATGGTTTAGTTAACACTTAAAGCATACATGT
TATCATATATAAACTTGATTAGTCATTCCAATAGCTAATCATTCTCAAACATTTCCATTTCATCC
ATGGCCATAACTAAGATTATACACACAAAATCATTGGAA
Found at i:62209821 original size:46 final size:46
Alignment explanation
Indices: 62209754--62209882 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
62209744 TGTAACCCGC
* * * * * *
62209754 CCATAAGCGAACTCGGACTCAATTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
*
62209800 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
62209846 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
62209883 TGCCCAAATA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62212126 original size:15 final size:15
Alignment explanation
Indices: 62212106--62212134 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
62212096 TCTATTGATA
62212106 ATCTCAAAATAATCC
1 ATCTCAAAATAATCC
62212121 ATCTCAAAATAATC
1 ATCTCAAAATAATC
62212135 TATAAGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (15 bp):
ATCTCAAAATAATCC
Found at i:62218319 original size:20 final size:20
Alignment explanation
Indices: 62218294--62218334 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
62218284 CCACTACAGT
* *
62218294 TTAAATTTTCCAAATTTTTC
1 TTAAATGTTCCAAATGTTTC
62218314 TTAAATGTTCCAAATGTTTC
1 TTAAATGTTCCAAATGTTTC
62218334 T
1 T
62218335 GATTTAGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.51
Consensus pattern (20 bp):
TTAAATGTTCCAAATGTTTC
Found at i:62224131 original size:27 final size:27
Alignment explanation
Indices: 62224062--62224134 Score: 112
Period size: 26 Copynumber: 2.7 Consensus size: 27
62224052 TTACCAAAGC
*
62224062 ACCCTCGATTTACAGAATTACCGTTTT
1 ACCCTCAATTTACAGAATTACCGTTTT
*
62224089 A-CCTCAATTTACAGAATTACTGTTTT
1 ACCCTCAATTTACAGAATTACCGTTTT
*
62224115 ACCCTCAATTTATAGAATTA
1 ACCCTCAATTTACAGAATTA
62224135 TCGAAATACC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
26 24 0.57
27 18 0.43
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (27 bp):
ACCCTCAATTTACAGAATTACCGTTTT
Found at i:62224160 original size:27 final size:27
Alignment explanation
Indices: 62224138--62224332 Score: 223
Period size: 27 Copynumber: 7.2 Consensus size: 27
62224128 AGAATTATCG
* *
62224138 AAATACCCTTAGTTTGTAAAATTTCCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* ***
62224165 AAATA-CCCTCGATCAATAAAATTACCA
1 AAATACCCCTAG-TTTGTAAAATTACCA
*
62224192 AAATACCCCTAGTTTGTAAAATTACTA
1 AAATACCCCTAGTTTGTAAAATTACCA
* *
62224219 AAATACCCTTGGTTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
*
62224246 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* *
62224273 AAATACCCCTGGCTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* * *
62224300 AAATACCCCT-GATTCGTGAAATTATCA
1 AAATACCCCTAG-TTTGTAAAATTACCA
62224327 AAATAC
1 AAATAC
62224333 TCTCAATTTG
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
26 5 0.03
27 135 0.93
28 5 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATACCCCTAGTTTGTAAAATTACCA
Found at i:62224380 original size:27 final size:27
Alignment explanation
Indices: 62224351--62224513 Score: 209
Period size: 27 Copynumber: 6.0 Consensus size: 27
62224341 TGTAAAATAT
* * *
62224351 CGAAATACCCTTGTAGGATAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
62224378 CGAAATGCCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
62224405 CGGAATACCCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
62224432 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
62224459 CAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
62224486 CGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
62224513 C
1 C
62224514 ATTTTACCCC
Statistics
Matches: 117, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:62224792 original size:24 final size:25
Alignment explanation
Indices: 62224716--62224785 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
62224706 AGGAAGTGCT
* *
62224716 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGATT-TGCCCCAGTTTATCA
*
62224741 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGATTTGCCCCAGTTTATCA
62224766 AAAAGGGATTTGCCCCAGTT
1 AAAAGGGATTTGCCCCAGTT
62224786 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGATTTGCCCCAGTTTATCA
Found at i:62227238 original size:27 final size:27
Alignment explanation
Indices: 62227194--62227453 Score: 148
Period size: 27 Copynumber: 9.6 Consensus size: 27
62227184 TTAGTTTACC
* * **
62227194 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
* * **
62227221 AAATTACCAAAGTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGGTTTGTA
* ***** * *
62227248 GAATTACTGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
* * * ** * *
62227275 GAATTATCGAAATACCCTTAGCTTGCA
1 AAATTACCAAAATACCCTCGGTTTGTA
* * **
62227302 AAATTTCCAAAATACCCTCGATCAGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
62227329 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* *
62227356 AAATTACTAAAATA-ACTCTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* * * *
62227383 AAAGTACTAAAATACCC-CTAGTTTGGA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* *
62227410 AAATTACCAAAATACCCTTGGCTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
62227437 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
62227454 CTGATTCTCA
Statistics
Matches: 176, Mismatches: 53, Indels: 8
0.74 0.22 0.03
Matches are distributed among these distances:
26 2 0.01
27 173 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGGTTTGTA
Found at i:62227369 original size:81 final size:82
Alignment explanation
Indices: 62227284--62227453 Score: 175
Period size: 81 Copynumber: 2.1 Consensus size: 82
62227274 AGAATTATCG
* * *
62227284 AAATACCCT-TAGCTTGCAAAATTTCCAAAATACCCTCGA-TCAGTAAAATTACCAAAATACCCC
1 AAATACCCTCTAGCTTGCAAAAGTACCAAAATACCC-CGAGTCAGGAAAATTACCAAAATACCCC
* *
62227347 TAGTTTGTAAAATTACTA
65 TAGCTTGTAAAATTACCA
* * * * * * ** *
62227365 AAATA-ACTCTGGTTTGTAAAAGTACTAAAATACCCCTAGTTTGGAAAATTACCAAAATACCCTT
1 AAATACCCTCTAGCTTGCAAAAGTACCAAAATACCCCGAGTCAGGAAAATTACCAAAATACCCCT
*
62227429 GGCTTGTAAAATTACCA
66 AGCTTGTAAAATTACCA
62227446 AAATACCC
1 AAATACCC
62227454 CTGATTCTCA
Statistics
Matches: 70, Mismatches: 16, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
80 4 0.06
81 65 0.93
82 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (82 bp):
AAATACCCTCTAGCTTGCAAAAGTACCAAAATACCCCGAGTCAGGAAAATTACCAAAATACCCCT
AGCTTGTAAAATTACCA
Found at i:62227384 original size:54 final size:54
Alignment explanation
Indices: 62227284--62227455 Score: 195
Period size: 54 Copynumber: 3.2 Consensus size: 54
62227274 AGAATTATCG
* * * * * * *
62227284 AAATACCCTTAGCTTGCAAAATTTCCAAAATACCC-TCGATCAGTAAAATTACCA
1 AAATACCCCTAGTTTGGAAAATTACCAAAATACCCTTGGCT-TGTAAAATTACCA
* * * * * *
62227338 AAATACCCCTAGTTTGTAAAATTACTAAAATA-ACTCTGGTTTGTAAAAGTACTA
1 AAATACCCCTAGTTTGGAAAATTACCAAAATACCCT-TGGCTTGTAAAATTACCA
62227392 AAATACCCCTAGTTTGGAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCA
1 AAATACCCCTAGTTTGGAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCA
62227446 AAATACCCCT
1 AAATACCCCT
62227456 GATTCTCAAA
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 92 0.94
55 5 0.05
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (54 bp):
AAATACCCCTAGTTTGGAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCA
Found at i:62230976 original size:28 final size:27
Alignment explanation
Indices: 62230932--62231041 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
62230922 CTGCACAATC
* *
62230932 GATGTCTTGCACGCTAAGTGCTATACCG
1 GATGTCTTGCACACTAAGTGCCAT-CCG
*
62230960 GATGT-TTCGCACACTAAGTGCCATCCTC
1 GATGTCTT-GCACACTAAGTGCCATCC-G
* *
62230988 GAT-ACTTCGCACACTAAGTGCCATTTCG
1 GATGTCTT-GCACACTAAGTGCCA-TCCG
62231016 GATGTCTTGCACACTAAGTGCCATCC
1 GATGTCTTGCACACTAAGTGCCATCC
62231042 TCAATACTTC
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
27 6 0.09
28 58 0.84
29 5 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (27 bp):
GATGTCTTGCACACTAAGTGCCATCCG
Found at i:62231018 original size:56 final size:56
Alignment explanation
Indices: 62230940--62231065 Score: 191
Period size: 56 Copynumber: 2.2 Consensus size: 56
62230930 TCGATGTCTT
* * *
62230940 GCACGCTAAGTGCTATACCGGATGT-TTCGCACACTAAGTGCCATCCTCGATACTTC
1 GCACACTAAGTGCCATACCGGATGTCTT-GCACACTAAGTGCCATCCTCAATACTTC
**
62230996 GCACACTAAGTGCCATTTCGGATGTCTTGCACACTAAGTGCCATCCTCAATACTTC
1 GCACACTAAGTGCCATACCGGATGTCTTGCACACTAAGTGCCATCCTCAATACTTC
62231052 GCACACTAAGTGCC
1 GCACACTAAGTGCC
62231066 GTTCGTTTGG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 62 0.97
57 2 0.03
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (56 bp):
GCACACTAAGTGCCATACCGGATGTCTTGCACACTAAGTGCCATCCTCAATACTTC
Found at i:62231055 original size:28 final size:28
Alignment explanation
Indices: 62230965--62231065 Score: 143
Period size: 28 Copynumber: 3.6 Consensus size: 28
62230955 TACCGGATGT
62230965 TTCGCACACTAAGTGCCATCCTCGATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* *
62230993 TTCGCACACTAAGTGCCAT-TTCGGATGTC
1 TTCGCACACTAAGTGCCATCCTC-GAT-AC
*
62231022 TT-GCACACTAAGTGCCATCCTCAATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
62231049 TTCGCACACTAAGTGCC
1 TTCGCACACTAAGTGCC
62231066 GTTCGTTTGG
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
27 5 0.08
28 54 0.84
29 5 0.08
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:62237185 original size:30 final size:31
Alignment explanation
Indices: 62237144--62237205 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
62237134 CCTTTAATAC
*
62237144 AAACTTTTTGCAAAATTACATTTTTGCCCCT
1 AAACTTTTTGCAAAATTACACTTTTGCCCCT
*
62237175 AAAC-TTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTTTGCAAAATTACACTTTTGCCCCT
62237205 A
1 A
62237206 GACTCGGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.86
31 4 0.14
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.40
Consensus pattern (31 bp):
AAACTTTTTGCAAAATTACACTTTTGCCCCT
Found at i:62248575 original size:13 final size:13
Alignment explanation
Indices: 62248557--62248582 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62248547 AGGTAAGTTC
62248557 GTGTAATTATATT
1 GTGTAATTATATT
62248570 GTGTAATTATATT
1 GTGTAATTATATT
62248583 CTTTAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
GTGTAATTATATT
Found at i:62248816 original size:22 final size:23
Alignment explanation
Indices: 62248757--62248816 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
62248747 ACCGATACTC
*
62248757 AGCTCGTATGAGCTTACTATTATTT
1 AGCTCGTATGAGCTTAC--TTAGTT
* * *
62248782 AGGTCGGAGGAGCTTAC-TAGTT
1 AGCTCGTATGAGCTTACTTAGTT
62248804 AGCTCGTATGAGC
1 AGCTCGTATGAGC
62248817 CTACATGTAC
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
22 14 0.50
25 14 0.50
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (23 bp):
AGCTCGTATGAGCTTACTTAGTT
Found at i:62249804 original size:42 final size:42
Alignment explanation
Indices: 62249757--62249840 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
62249747 GGTGCAATAA
62249757 TGCATATATGTAATTGGTCATTCAGGTAAGTTTGGATACATG
1 TGCATATATGTAATTGGTCATTCAGGTAAGTTTGGATACATG
*
62249799 TGCATATATGTAATTGGTCATTTAGGTAAGTTTGGATACATG
1 TGCATATATGTAATTGGTCATTCAGGTAAGTTTGGATACATG
62249841 GTTGACATGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (42 bp):
TGCATATATGTAATTGGTCATTCAGGTAAGTTTGGATACATG
Found at i:62256889 original size:43 final size:44
Alignment explanation
Indices: 62256832--62256951 Score: 124
Period size: 43 Copynumber: 2.8 Consensus size: 44
62256822 AGAACATACA
62256832 CAATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAACAT
1 CAATGCCAACTGTCCCAGACGTGGTCTTACATGTAATCAAACAT
* * * * *
62256875 CAATGCC-ACTGTCCCAAATAG-GGTCTTACACGAAATCAAATAT
1 CAATGCCAACTGTCCCAGA-CGTGGTCTTACATGTAATCAAACAT
* * *
62256918 -GATGCCGA-TGTCCCAGACATGGTCTTACATGTAA
1 CAATGCCAACTGTCCCAGACGTGGTCTTACATGTAA
62256952 AATAGAAGTC
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
42 27 0.44
43 34 0.55
44 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (44 bp):
CAATGCCAACTGTCCCAGACGTGGTCTTACATGTAATCAAACAT
Found at i:62257814 original size:11 final size:11
Alignment explanation
Indices: 62257787--62257816 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
62257777 ACCCTAGGTA
62257787 GTTATTTTCTT
1 GTTATTTTCTT
62257798 -TTATTTTCTT
1 GTTATTTTCTT
62257808 GTTATTTTC
1 GTTATTTTC
62257817 AGTCATGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.10, C:0.10, G:0.07, T:0.73
Consensus pattern (11 bp):
GTTATTTTCTT
Found at i:62261014 original size:20 final size:21
Alignment explanation
Indices: 62260989--62261035 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
62260979 GTTTTGATAT
*
62260989 ACATGATTGA-TATGATATGC
1 ACATGATTAAGTATGATATGC
62261009 ACATGA-TAAGTATGATATGC
1 ACATGATTAAGTATGATATGC
62261029 ACATGAT
1 ACATGAT
62261036 GTATTCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (21 bp):
ACATGATTAAGTATGATATGC
Found at i:62261136 original size:25 final size:25
Alignment explanation
Indices: 62261108--62261190 Score: 125
Period size: 25 Copynumber: 3.4 Consensus size: 25
62261098 TAGTTTACCG
62261108 AAAAGGGCTTTTGCCCCAGTTTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
*
62261133 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTATT
*
62261158 AAAAGAGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
62261181 AAAAGAGGCT
1 AAAAG-GGCT
62261191 AGGCCTCGAG
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
23 9 0.17
24 12 0.23
25 31 0.60
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATT
Found at i:62261437 original size:31 final size:31
Alignment explanation
Indices: 62261399--62261485 Score: 102
Period size: 38 Copynumber: 2.6 Consensus size: 31
62261389 CGTTTACAGT
*
62261399 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
62261430 AAAGGCTTCGGCCCAGTGTTAGGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G-T----AATATGAAATATGA
62261468 AAAGGCTTCGGCCCAGTA
1 AAAGGCTTCGGCCCAGTA
62261486 TACGCTGAGT
Statistics
Matches: 48, Mismatches: 1, Indels: 14
0.76 0.02 0.22
Matches are distributed among these distances:
31 15 0.31
33 1 0.02
34 1 0.02
35 1 0.02
36 1 0.02
38 29 0.60
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:62264120 original size:46 final size:46
Alignment explanation
Indices: 62264070--62264242 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
62264060 TGGTTGAGCA
* *
62264070 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
62264116 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* * * * *
62264163 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCAATTATGGATATGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
62264209 CCCGAGCTCGTTGAGTTGAGTCCGAGTTAACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62264243 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.58
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:62264226 original size:93 final size:93
Alignment explanation
Indices: 62264067--62264236 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 93
62264057 GGATGGTTGA
* * * *
62264067 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATACAAACGCCCGAACTCGTTGAGT
62264132 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * ** *
62264160 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCAATTATGGATATGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATACAAACGCCCGAACTCGTTGAGT
62264225 TGAGTCCGAGTT
66 TGAGTCCGAGTT
62264237 AACTTAGGGG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATACAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62271663 original size:46 final size:46
Alignment explanation
Indices: 62271613--62271785 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
62271603 TGGTTGAGCA
62271613 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62271659 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
62271704 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62271752 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62271786 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62271769 original size:93 final size:93
Alignment explanation
Indices: 62271610--62271780 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
62271600 GGATGGTTGA
* *
62271610 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62271675 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
62271703 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62271768 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62271781 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62279454 original size:20 final size:20
Alignment explanation
Indices: 62279429--62279477 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
62279419 GTTTTAATAT
62279429 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
62279449 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
62279469 ACATGATAT
1 ACATGATAT
62279478 ATTCATAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 26 0.93
21 2 0.07
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:62279456 original size:11 final size:11
Alignment explanation
Indices: 62279440--62279477 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
62279430 CATGATTGAT
62279440 ATGATATGCAC
1 ATGATATGCAC
*
62279451 ATGATATG--T
1 ATGATATGCAC
62279460 ATGATATGCAC
1 ATGATATGCAC
62279471 ATGATAT
1 ATGATAT
62279478 ATTCATAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.35
11 15 0.65
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:62279488 original size:20 final size:20
Alignment explanation
Indices: 62279429--62279489 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
62279419 GTTTTAATAT
*
62279429 ACATGAT-TGATATGATATGC
1 ACATGATAT-ATATCATATGC
* *
62279449 ACATGATATGTATGATATGC
1 ACATGATATATATCATATGC
62279469 ACATGATATAT-TCATAATGC
1 ACATGATATATATCAT-ATGC
62279489 A
1 A
62279490 TTGGGTTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 3 0.08
20 32 0.89
21 1 0.03
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (20 bp):
ACATGATATATATCATATGC
Found at i:62279551 original size:26 final size:24
Alignment explanation
Indices: 62279523--62279617 Score: 104
Period size: 25 Copynumber: 3.9 Consensus size: 24
62279513 AGGAAGTGCA
* *
62279523 AAAAGGGC-TATGCCCTAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTA-C
*
62279547 GAAAAGGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGCTTTTGCCCCAGTTTA-C
62279573 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTA-C
*
62279598 AAAAGGGC-TTTGCCCTAGTT
1 AAAAGGGCTTTTGCCCCAGTT
62279618 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.17
25 40 0.63
26 12 0.19
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTTTGCCCCAGTTTAC
Found at i:62279877 original size:31 final size:31
Alignment explanation
Indices: 62279839--62279902 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
62279829 CATTTACAGT
*
62279839 AAAGGCTTCAGCCCGGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* **
62279870 AAAGGCTTCGGCCCAGTCTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
62279901 AA
1 AA
62279903 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:62283724 original size:48 final size:47
Alignment explanation
Indices: 62283661--62283806 Score: 143
Period size: 48 Copynumber: 3.0 Consensus size: 47
62283651 TACTCAGGAG
* * * *
62283661 TCTCGCACACTAAGTGCCAATGTCATGGCTTGAAGCCAACTCAATATA
1 TCTCGCACCCGAAGTGCCAATATCATGGC-CGAAGCCAACTCAATATA
*
62283709 TCTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAGC-CAATGA-A
1 TCTCGCACCCGAAGTGCCAATATCATGG-CCGAAGCCAA-CTCAAT-ATA
* * * * *
62283757 GCTCACACCTGAAGTGCCAATATCATGGGCCGAAGCCAAATCAATGTA
1 TCTCGCACCCGAAGTGCCAATATCAT-GGCCGAAGCCAACTCAATATA
62283805 TC
1 TC
62283807 CTCTAACAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
48 75 0.94
49 5 0.06
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.21
Consensus pattern (47 bp):
TCTCGCACCCGAAGTGCCAATATCATGGCCGAAGCCAACTCAATATA
Found at i:62283818 original size:15 final size:15
Alignment explanation
Indices: 62283798--62283827 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
62283788 GAAGCCAAAT
62283798 CAATGTATCCTCTAA
1 CAATGTATCCTCTAA
62283813 CAATGTATCCTCTAA
1 CAATGTATCCTCTAA
62283828 TGACATATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (15 bp):
CAATGTATCCTCTAA
Found at i:62288557 original size:15 final size:15
Alignment explanation
Indices: 62288525--62288553 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62288515 TTTTTCTGTG
62288525 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
62288540 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
62288554 ATTTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:62289717 original size:45 final size:41
Alignment explanation
Indices: 62289665--62289763 Score: 117
Period size: 45 Copynumber: 2.3 Consensus size: 41
62289655 GATATTTGTT
* * *
62289665 TTCGTGTAAGACCACGTCTAGGACGTTGGCATCGATATATGTGG
1 TTCGTGTAAGACCACGTCTAGGACATCGGCATCG-TAT-T-TGA
* *
62289709 TTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA
1 TT-CGTGTAAGACCACGTCTAGGACATCGGCATCGTATTTGA
62289751 TTCGTGTAAGACC
1 TTCGTGTAAGACC
62289764 TTGTCTGGGA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
41 11 0.22
42 4 0.08
43 1 0.02
44 5 0.10
45 28 0.57
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
TTCGTGTAAGACCACGTCTAGGACATCGGCATCGTATTTGA
Found at i:62289769 original size:41 final size:44
Alignment explanation
Indices: 62289665--62289788 Score: 139
Period size: 41 Copynumber: 2.9 Consensus size: 44
62289655 GATATTTGTT
* * * * *
62289665 TTCGTGTAAGACCACGTCTAGGACGTTGGCATCGATATATGTGG
1 TTCGTGTAAGACCATGTCTGGGACATCGGCATCGATATATGTGA
62289709 TTACGTGTAAGACCATGTCTGGGACATCGGCATCG-TAT-T-TGA
1 TT-CGTGTAAGACCATGTCTGGGACATCGGCATCGATATATGTGA
* *
62289751 TTCGTGTAAGACCTTGTCTGGGACAGT-GGCACCGATAT
1 TTCGTGTAAGACCATGTCTGGGACA-TCGGCATCGATAT
62289789 GAGATAGCAT
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
41 28 0.40
42 8 0.11
43 1 0.01
44 5 0.07
45 28 0.40
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (44 bp):
TTCGTGTAAGACCATGTCTGGGACATCGGCATCGATATATGTGA
Found at i:62294759 original size:27 final size:27
Alignment explanation
Indices: 62294727--62294828 Score: 150
Period size: 27 Copynumber: 3.8 Consensus size: 27
62294717 CCTTAATCGA
* **
62294727 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGACG
* *
62294754 TGAAATGATTGTTTTGCCCTTATGACG
1 TAAAATGACTGTTTTGCCCTTATGACG
*
62294781 TAAAATGACTGTTTTGCCCTTATAACG
1 TAAAATGACTGTTTTGCCCTTATGACG
62294808 TAAAATGACTGTTTTGCCCTT
1 TAAAATGACTGTTTTGCCCTT
62294829 GACTGTTTTC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGACG
Found at i:62294833 original size:15 final size:15
Alignment explanation
Indices: 62294813--62294857 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
62294803 TAACGTAAAA
62294813 TGACTGTTTTGCCCT
1 TGACTGTTTTGCCCT
*
62294828 TGACTGTTTTCCCCT
1 TGACTGTTTTGCCCT
*
62294843 TGAC-CTTTTGCCCT
1 TGACTGTTTTGCCCT
62294857 T
1 T
62294858 ATGTTGTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 9 0.33
15 18 0.67
ACGTcount: A:0.07, C:0.31, G:0.16, T:0.47
Consensus pattern (15 bp):
TGACTGTTTTGCCCT
Found at i:62299436 original size:27 final size:26
Alignment explanation
Indices: 62299406--62299830 Score: 226
Period size: 27 Copynumber: 15.8 Consensus size: 26
62299396 TTAGTTTACC
*
62299406 AAATCACCGAAATACCCCTTGTTTGTA
1 AAATTACCGAAATA-CCCTTGTTTGTA
** *
62299433 AAATTACC-AAAGTATCCCCGGTTTATA
1 AAATTACCGAAA-TA-CCCTTGTTTGTA
* * *
62299460 AAATTACCAAAATACCGTTGGTTGTA
1 AAATTACCGAAATACCCTTGTTTGTA
* *
62299486 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTTG-TTTGTA
** *
62299513 AAATTACCGAAATACCCTCAATTTGCA
1 AAATTACCGAAATACCCT-TGTTTGTA
* *
62299540 AAATTACTGAAATACCCTTGATTTGCA
1 AAATTACCGAAATACCCTTG-TTTGTA
** * *
62299567 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTTG-TTTGTA
* *
62299594 AAATTACC-AAAGTACCCTCGGTTTATA
1 AAATTACCGAAA-TACCCT-TGTTTGTA
* *
62299621 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTTG-TTTGTA
* **
62299648 AAATTACCAAAATACCCTTGTAGGGTA
1 AAATTACCGAAATACCCTTGT-TTGTA
* **
62299675 TAAA-TACCGAAATACCCATGTAGGGTA
1 -AAATTACCGAAATACCCTTGT-TTGTA
* * * **
62299702 GAATTACTGAAATAGCCTTGTAGGGTA
1 AAATTACCGAAATACCCTTGT-TTGTA
* * * * **
62299729 GAATTACTGAAACACCCCTGTAGGGTA
1 AAATTACCGAAATACCCTTGT-TTGTA
* * * **
62299756 GAATTATCGAAATACCCCTGTAGGATA
1 AAATTACCGAAATACCCTTGTTTG-TA
* * * **
62299783 GAATTACTGAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCTTGT-TTGTA
*
62299810 GAATTACCGAAATACCCTTGT
1 AAATTACCGAAATACCCTTGT
62299831 AGGGTAGAAA
Statistics
Matches: 327, Mismatches: 57, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
26 35 0.11
27 280 0.86
28 12 0.04
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (26 bp):
AAATTACCGAAATACCCTTGTTTGTA
Found at i:62299691 original size:81 final size:81
Alignment explanation
Indices: 62299428--62299665 Score: 295
Period size: 81 Copynumber: 3.0 Consensus size: 81
62299418 TACCCCTTGT
** * *
62299428 TTGTAAAATTACC-AAAGTATCCC-CGGTTTATAAAATTACCAAAATACCGTTG-GTTGTAAAAT
1 TTGTAAAATTACCGAAA-TA-CCCTCGGTTTATAAAATTACTGAAATACCCTTGATTTGTAAAAT
*
62299490 TACTGAAATACCCTCGAT
64 TACTGAAATACCCTCGAC
** ** *
62299508 TTGTAAAATTACCGAAATACCCTCAATTTGCAAAATTACTGAAATACCCTTGATTTGCAAAATTA
1 TTGTAAAATTACCGAAATACCCTCGGTTTATAAAATTACTGAAATACCCTTGATTTGTAAAATTA
*
62299573 TTGAAATACCCTCGAC
66 CTGAAATACCCTCGAC
*
62299589 TTGTAAAATTACC-AAAGTACCCTCGGTTTATAAAATTACTGAAATACCCTCGATTTGTAAAATT
1 TTGTAAAATTACCGAAA-TACCCTCGGTTTATAAAATTACTGAAATACCCTTGATTTGTAAAATT
**
62299653 ACCAAAATACCCT
65 ACTGAAATACCCT
62299666 TGTAGGGTAT
Statistics
Matches: 134, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
79 3 0.02
80 40 0.30
81 91 0.68
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (81 bp):
TTGTAAAATTACCGAAATACCCTCGGTTTATAAAATTACTGAAATACCCTTGATTTGTAAAATTA
CTGAAATACCCTCGAC
Found at i:62299707 original size:81 final size:81
Alignment explanation
Indices: 62299622--62299869 Score: 302
Period size: 81 Copynumber: 3.1 Consensus size: 81
62299612 CGGTTTATAA
** * * *
62299622 AATTACTGAAATACCCTCG-ATTTGTAAAATTACCAAAATACCCTTGTAGGGTATAAATACCGAA
1 AATTACTGAAATACCCTCGTA-GGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
62299686 ATACCCATGTAGGGTAG
65 ATACCCATGTAGGGTAG
* * * * * * *
62299703 AATTACTGAAATAGCCTTGTAGGGTAGAATTACTGAAACACCCCTGTAGGGTAGAATTATCGAAA
1 AATTACTGAAATACCCTCGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
* *
62299768 TACCCCTGTAGGATAG
66 TACCCATGTAGGGTAG
*
62299784 AATTACTGAAATACCC-CTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAA
1 AATTACTGAAATACCCTC-GTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
** *
62299848 ATACCTTTGTAGTGTAG
65 ATACCCATGTAGGGTAG
62299865 AATTA
1 AATTA
62299870 TCGAGATACC
Statistics
Matches: 139, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
81 138 0.99
82 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (81 bp):
AATTACTGAAATACCCTCGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCATGTAGGGTAG
Found at i:62299831 original size:27 final size:27
Alignment explanation
Indices: 62299649--62299898 Score: 293
Period size: 27 Copynumber: 9.3 Consensus size: 27
62299639 CGATTTGTAA
* *
62299649 AATTACCAAAATACCCTTGTAGGGTAT
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
62299676 AAATACCGAAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
62299703 AATTACTGAAATAGCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
62299730 AATTACTGAAACACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
62299757 AATTATCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
62299784 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
62299811 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
62299838 AAATACTGAAATACCTTTGTAGTGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * * *
62299865 AATTATCGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
62299892 AATTACC
1 AATTACC
62299899 ATTTTGCCCC
Statistics
Matches: 189, Mismatches: 34, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 189 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:62300585 original size:27 final size:26
Alignment explanation
Indices: 62300541--62300592 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62300531 CTCGCTGCAA
*
62300541 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
62300568 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
62300593 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:62300683 original size:27 final size:26
Alignment explanation
Indices: 62300631--62300689 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
62300621 CCACATATAT
*
62300631 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
62300657 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
62300684 ATATCT
1 ATATCT
62300690 AGCAGCCTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:62303216 original size:46 final size:46
Alignment explanation
Indices: 62303166--62303337 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
62303156 TGAGCATCCA
62303166 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
62303212 AACTCATTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCCG
* * *
62303259 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
62303305 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62303338 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
45 1 0.01
46 59 0.56
47 26 0.25
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:62303318 original size:93 final size:93
Alignment explanation
Indices: 62303159--62303328 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
62303149 GGATGGTTGA
* *
62303159 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
62303224 TGAGTCCGAGTTTGAGAGATGTAACTAG
66 TGAGTCCGAGTTTGAGAGATGTAACTAG
* * * *
62303252 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
62303317 TGAGTCCGAGTT
66 TGAGTCCGAGTT
62303329 CACTTATGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTTGAGAGATGTAACTAG
Found at i:62305016 original size:15 final size:15
Alignment explanation
Indices: 62304979--62305021 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
62304969 CAGAGTATCG
*
62304979 TATCTTGG-TTTCTT
1 TATCTTGGATTTCTC
62304993 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
62305008 TATCTTGGATTTCT
1 TATCTTGGATTTCT
62305022 TTATTCAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.04
14 6 0.24
15 17 0.68
16 1 0.04
ACGTcount: A:0.12, C:0.16, G:0.14, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:62307433 original size:46 final size:44
Alignment explanation
Indices: 62307383--62307556 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 44
62307373 TGGTTGAGCA
62307383 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAA-G
*** * *
62307429 TCCGAACTCGTTGAGTTGAGTCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCGAGTTC-ACTTATG-GA-T-GCGAAG
*
62307475 TCCGAGCTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAA-G
* *
62307520 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGG
62307557 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 31 0.29
46 67 0.62
47 1 0.01
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAAG
Found at i:62307536 original size:91 final size:93
Alignment explanation
Indices: 62307380--62307548 Score: 288
Period size: 91 Copynumber: 1.8 Consensus size: 93
62307370 GGATGGTTGA
* *
62307380 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62307445 TGAGT-CGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
62307472 GCATCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62307536 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62307549 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 42 0.58
92 30 0.42
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:62310913 original size:48 final size:48
Alignment explanation
Indices: 62310854--62310988 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 48
62310844 CTTGCACACT
* * *
62310854 AAGTGCCAATATCATGTCCCGAAGCCAACTCAATATATCTTACACCCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATATCTCACACCCA
* * * * *
62310902 AAGTGCTAATATCATGGCTCGAAGCCAAATCAATGA-AGCTCGCACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAAT-ATATCTCACACCCA
* * *
62310950 AAGTGCCAATATCATGGGCTGAAGCCAAATCAATGTATC
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATATC
62310989 CCCTAATGAC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
48 70 0.99
49 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATATCTCACACCCA
Found at i:62316866 original size:40 final size:40
Alignment explanation
Indices: 62316829--62317092 Score: 322
Period size: 40 Copynumber: 6.7 Consensus size: 40
62316819 GCTACTCGTT
*
62316829 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
62316869 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
62316909 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
62316948 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
62316988 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
62317027 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
62317068 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62317093 CATCATTCGA
Statistics
Matches: 191, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.01
39 65 0.34
40 111 0.58
41 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62316940 original size:79 final size:80
Alignment explanation
Indices: 62316831--62317092 Score: 354
Period size: 79 Copynumber: 3.3 Consensus size: 80
62316821 TACTCGTTCA
* * *
62316831 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
62316895 TTTAGTAACTCGCACC
65 TTTAGTAACTCGCACC
*
62316911 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTAGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGAT
62316975 TTAGTAACTCGCACC
66 TTAGTAACTCGCACC
* **
62316990 AATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* * * *
62317053 TATGGTCACTTAGCA-C
65 TTTAGTAAC-TCGCACC
*
62317069 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
62317093 CATCATTCGA
Statistics
Matches: 164, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
78 3 0.02
79 134 0.82
80 27 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCACC
Found at i:62317046 original size:119 final size:121
Alignment explanation
Indices: 62316829--62317092 Score: 353
Period size: 119 Copynumber: 2.2 Consensus size: 121
62316819 GCTACTCGTT
* *
62316829 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
62316893 GATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA-ATTAGT-A-TCTAGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATA-TAGTCACT-TAGCA
* * *
62316948 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* * * *
62317011 GAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGATATAGTCACTTAGCA
62317068 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62317093 CATCATTCGA
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
118 33 0.26
119 81 0.63
120 13 0.10
121 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
GAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATATAGTCACTTAGCA
Found at i:62322920 original size:28 final size:28
Alignment explanation
Indices: 62322866--62323074 Score: 341
Period size: 28 Copynumber: 7.5 Consensus size: 28
62322856 TAAATTGTAC
* *
62322866 AGCACTAAGTGTG-TAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
62322893 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
62322921 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
62322949 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
62322977 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
62323005 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
62323033 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
62323060 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62323075 GACTTAATAT
Statistics
Matches: 176, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
27 37 0.21
28 139 0.79
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:62331105 original size:28 final size:28
Alignment explanation
Indices: 62331061--62331160 Score: 132
Period size: 28 Copynumber: 3.5 Consensus size: 28
62331051 TAAATTGTAC
62331061 AGCACT-AGTGTG-GAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
62331087 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
62331115 AGCACTAAGTGGGTGCGAGCTTGATTAATAT
1 AGCACTAAGT--GTGCGAGTTTGATT-ATGT
*
62331146 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62331161 GACTTAATAT
Statistics
Matches: 66, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
26 6 0.09
27 6 0.09
28 24 0.36
29 5 0.08
30 13 0.20
31 12 0.18
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:62345755 original size:23 final size:24
Alignment explanation
Indices: 62345722--62345820 Score: 96
Period size: 23 Copynumber: 4.1 Consensus size: 24
62345712 TGAATCAAAG
62345722 TTTAAAGTGCTGCAAATTGAAGTG-
1 TTTAAA-TGCTGCAAATTGAAGTGT
*
62345746 TTTGAATGCTGC-AATTGAAGTGT
1 TTTAAATGCTGCAAATTGAAGTGT
* *
62345769 TTTAAATGCTGTAAATTGAAGCTGC
1 TTTAAATGCTGCAAATTGAAG-TGT
* *
62345794 ATTAAATCGTTGCAAA-TGAGAGTGT
1 TTTAAAT-GCTGCAAATTGA-AGTGT
62345819 TT
1 TT
62345821 AAGGTCTGAA
Statistics
Matches: 61, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
22 10 0.16
23 16 0.26
24 13 0.21
25 14 0.23
26 8 0.13
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.36
Consensus pattern (24 bp):
TTTAAATGCTGCAAATTGAAGTGT
Found at i:62345986 original size:24 final size:24
Alignment explanation
Indices: 62345930--62346012 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 24
62345920 AGTGCCTGAG
*
62345930 TGCTG-TAAATTGTAGTG-TTAAA
1 TGCTGATAAATTGAAGTGTTTAAA
* *
62345952 -G-TTATGAAATTGAAGTGTATTGAA
1 TGCTGAT-AAATTGAAGTGT-TTAAA
62345976 TGCT-ATAAATTGAAGTGTTTAAA
1 TGCTGATAAATTGAAGTGTTTAAA
*
62345999 TGCTGTTAAATTGA
1 TGCTGATAAATTGA
62346013 GTGGCATTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
20 1 0.02
21 2 0.04
22 10 0.20
23 8 0.16
24 24 0.49
25 3 0.06
26 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.40
Consensus pattern (24 bp):
TGCTGATAAATTGAAGTGTTTAAA
Found at i:62346195 original size:24 final size:24
Alignment explanation
Indices: 62346132--62346204 Score: 87
Period size: 24 Copynumber: 3.0 Consensus size: 24
62346122 TAATGAGATG
*
62346132 TAAAGTGCTACAAATTGAAGTGCTT
1 TAAAGTGCTGCAAATTGAAGTG-TT
*
62346157 TAAA-T-CTGTACAATTGAAGTGTT
1 TAAAGTGCTGCA-AATTGAAGTGTT
*
62346180 TAAAGTGCTGCAAATTGAAATGTT
1 TAAAGTGCTGCAAATTGAAGTGTT
62346204 T
1 T
62346205 GATGCTTGCC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
23 9 0.22
24 24 0.59
25 8 0.20
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.36
Consensus pattern (24 bp):
TAAAGTGCTGCAAATTGAAGTGTT
Found at i:62346253 original size:25 final size:25
Alignment explanation
Indices: 62346225--62346278 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
62346215 CATTGAAGTA
*
62346225 TTAAAGCTGCTAAATTGAAGTTG-CT
1 TTAAAGCTGC-AAATTGAAGCTGTCT
* *
62346250 TTAATGTTGCAAATTGAAGCTGTCT
1 TTAAAGCTGCAAATTGAAGCTGTCT
62346275 TTAA
1 TTAA
62346279 TCTACTGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (25 bp):
TTAAAGCTGCAAATTGAAGCTGTCT
Found at i:62346647 original size:23 final size:23
Alignment explanation
Indices: 62346598--62346749 Score: 93
Period size: 23 Copynumber: 6.6 Consensus size: 23
62346588 TAATGTTGTT
* *
62346598 AAATTG-AGATGTAAAAGTGCTGT
1 AAATTGAAG-TGTTAAAGTGCTGC
62346621 AAATTGAATGTGTTAAAGTGC-GC
1 AAATTGAA-GTGTTAAAGTGCTGC
*
62346644 AAATTGAAGTGTTTGAA--GCTGC
1 AAATTGAAGTG-TTAAAGTGCTGC
* *
62346666 CAATTGAAGTGTTTAAA-TGCTGT
1 AAATTGAAGTG-TTAAAGTGCTGC
* *
62346689 AAATTGAAATGCTTAAA-TGTTGC
1 AAATTGAAGTG-TTAAAGTGCTGC
* *
62346712 AAAATTGGAAGTGTTTAA-TAACTGC
1 -AAATT-GAAGTGTTAAAGT-GCTGC
*
62346737 AAATTAAAGTGTT
1 AAATTGAAGTGTT
62346750 TTGTTGCTGG
Statistics
Matches: 105, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
21 2 0.02
22 20 0.19
23 48 0.46
24 26 0.25
25 9 0.09
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (23 bp):
AAATTGAAGTGTTAAAGTGCTGC
Found at i:62346714 original size:68 final size:71
Alignment explanation
Indices: 62346615--62346750 Score: 165
Period size: 68 Copynumber: 2.0 Consensus size: 71
62346605 GATGTAAAAG
* * * * *
62346615 TGCTGTAAATTGAATGTGTTAAAGTGCGC-AAATT-GAAGTGTTTGA-AGCTGCCAATTGAAGTG
1 TGCTGTAAATTGAATGTCTTAAAGTGCGCAAAATTGGAAGTGTTTAATAACTGCAAATTAAAGTG
62346677 TTTAAA
66 TTTAAA
*
62346683 TGCTGTAAATTGAAATG-CTTAAA-TGTTGCAAAATTGGAAGTGTTTAATAACTGCAAATTAAAG
1 TGCTGTAAATTG-AATGTCTTAAAGTG-CGCAAAATTGGAAGTGTTTAATAACTGCAAATTAAAG
62346746 TGTTT
64 TGTTT
62346751 TGTTGCTGGA
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
67 2 0.04
68 19 0.33
69 9 0.16
70 10 0.18
71 17 0.30
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (71 bp):
TGCTGTAAATTGAATGTCTTAAAGTGCGCAAAATTGGAAGTGTTTAATAACTGCAAATTAAAGTG
TTTAAA
Found at i:62347000 original size:68 final size:68
Alignment explanation
Indices: 62346865--62346993 Score: 154
Period size: 68 Copynumber: 1.9 Consensus size: 68
62346855 ATTGGCTTGA
* *
62346865 TAAATTGAAGTGCTTAAAAGCTGCGAAATTGAAGTGTTTGAATGCATAAATGAGGTGTTTCAATG
1 TAAAATGAAGTGCTTAAAAGCTGCGAAATTGAAGTGTTTGAATGCATAAATGAAGTGTTTCAATG
62346930 CTG
66 CTG
* * * * *
62346933 TAAAATGATGTGCTTAAATGTTGC-AAATTGAAAGTGTTTAAGTATGCA-AATTGAAGTGTTT
1 TAAAATGAAGTGCTTAAAAGCTGCGAAATTG-AAGTGTTT--GAATGCATAAATGAAGTGTTT
62346994 AGTGCTGGAC
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
67 6 0.12
68 28 0.55
69 11 0.22
70 6 0.12
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35
Consensus pattern (68 bp):
TAAAATGAAGTGCTTAAAAGCTGCGAAATTGAAGTGTTTGAATGCATAAATGAAGTGTTTCAATG
CTG
Found at i:62347613 original size:21 final size:22
Alignment explanation
Indices: 62347544--62347615 Score: 69
Period size: 21 Copynumber: 3.3 Consensus size: 22
62347534 TTGAAGTGCT
*
62347544 AATGCATGTAAATTGAGTG--TA
1 AATGC-TGCAAATTGAGTGTTTA
**
62347565 AAGTGCATGCAAATTGAGTGTTGG
1 AA-TGC-TGCAAATTGAGTGTTTA
62347589 AATGCTGC-AATTGAGTGTTTA
1 AATGCTGCAAATTGAGTGTTTA
62347610 AATGCT
1 AATGCT
62347616 CATATAATTG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 19 0.44
22 19 0.44
23 3 0.07
24 2 0.05
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.33
Consensus pattern (22 bp):
AATGCTGCAAATTGAGTGTTTA
Found at i:62347785 original size:48 final size:47
Alignment explanation
Indices: 62347731--62347821 Score: 123
Period size: 47 Copynumber: 1.9 Consensus size: 47
62347721 ATTGAGGGTA
*
62347731 TAAATGTTGTTAATTG-AGATGTAAAAAGTT-CTGCAAATTGAAGTTGCT
1 TAAATGTTGTAAATTGAAGATGT--AAA-TTGCTGCAAATTGAAGTTGCT
*
62347779 TAAATGTTGTAAATTGAAGTTGTAAATTGCTGCAAATTGAAGT
1 TAAATGTTGTAAATTGAAGATGTAAATTGCTGCAAATTGAAGT
62347822 GTTTGGAATG
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
46 2 0.05
47 17 0.44
48 15 0.38
49 5 0.13
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.37
Consensus pattern (47 bp):
TAAATGTTGTAAATTGAAGATGTAAATTGCTGCAAATTGAAGTTGCT
Found at i:62347819 original size:23 final size:23
Alignment explanation
Indices: 62347761--62347893 Score: 89
Period size: 24 Copynumber: 5.6 Consensus size: 23
62347751 GTAAAAAGTT
62347761 CTGCAAATTGAAGTTGCTTAAATG
1 CTGCAAATTGAAGTTGC-TAAATG
* *
62347785 TTGTAAATTGAAGTTG-TAAATTG
1 CTGCAAATTGAAGTTGCTAAA-TG
* *
62347808 CTGCAAATTGAAG-TGTTTGGAATG
1 CTGCAAATTGAAGTTG-CT-AAATG
62347832 CTGACAAATTGAAGGTT--TAAATG
1 CTG-CAAATTGAA-GTTGCTAAATG
*
62347855 CTTGTAAAATTGAAG-TGCTTAAATG
1 C-TG-CAAATTGAAGTTGC-TAAATG
62347880 -TGCAAATTTGAAGT
1 CTGCAAA-TTGAAGT
62347894 GTTTAAGAGT
Statistics
Matches: 87, Mismatches: 9, Indels: 26
0.71 0.07 0.21
Matches are distributed among these distances:
22 10 0.11
23 27 0.31
24 31 0.36
25 17 0.20
26 1 0.01
27 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.35
Consensus pattern (23 bp):
CTGCAAATTGAAGTTGCTAAATG
Found at i:62347865 original size:72 final size:70
Alignment explanation
Indices: 62347764--62347897 Score: 175
Period size: 72 Copynumber: 1.9 Consensus size: 70
62347754 AAAAGTTCTG
62347764 CAAATTGAAGTTGCTTAAATGTTGTAAATTGAAGTTG-TAAATTGCTGCAAA-TTGAAGTGTTTG
1 CAAATTGAAG-TGCTTAAATGTTGTAAATTGAAG-TGCTAAA-TG-TGCAAATTTGAAGTGTTTG
62347827 GAATGCTGA
62 GAATGCTGA
*
62347836 CAAATTGAAG-GTTTAAATGCTTGTAAAATTGAAGTGCTTAAATGTGCAAATTTGAAGTGTTT
1 CAAATTGAAGTGCTTAAATG-TTGT-AAATTGAAGTGC-TAAATGTGCAAATTTGAAGTGTTT
62347898 AAGAGTCTGA
Statistics
Matches: 56, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
70 8 0.14
71 12 0.21
72 32 0.57
73 4 0.07
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (70 bp):
CAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGCTAAATGTGCAAATTTGAAGTGTTTGGAAT
GCTGA
Found at i:62347894 original size:23 final size:23
Alignment explanation
Indices: 62347761--62347899 Score: 131
Period size: 23 Copynumber: 5.9 Consensus size: 23
62347751 GTAAAAAGTT
*
62347761 CTGCAAATTGAAGTTGCTTAAATG
1 CTGCAAATTGAAG-TGTTTAAATG
* * *
62347785 TTGTAAATTGAAGT-TGTAAATTG
1 CTGCAAATTGAAGTGTTTAAA-TG
*
62347808 CTGCAAATTGAAGTGTTTGGAATG
1 CTGCAAATTGAAGTGTTT-AAATG
62347832 CTGACAAATTGAAG-GTTTAAATG
1 CTG-CAAATTGAAGTGTTTAAATG
* *
62347855 CTTGTAAAATTGAAGTGCTTAAATG
1 C-TG-CAAATTGAAGTGTTTAAATG
62347880 -TGCAAATTTGAAGTGTTTAA
1 CTGCAAA-TTGAAGTGTTTAA
62347900 GAGTCTGAAA
Statistics
Matches: 94, Mismatches: 14, Indels: 15
0.76 0.11 0.12
Matches are distributed among these distances:
22 7 0.07
23 34 0.36
24 33 0.35
25 20 0.21
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (23 bp):
CTGCAAATTGAAGTGTTTAAATG
Found at i:62348050 original size:225 final size:220
Alignment explanation
Indices: 62347728--62349191 Score: 812
Period size: 225 Copynumber: 6.8 Consensus size: 220
62347718 TAGATTGAGG
* * * *
62347728 GTATAAATG-TTGTTAATTGAGATGTAAAAAGTTCTGCAAATTGAAGTTGCTTAAATGTTGTAAA
1 GTAT-AATGTTTGTTAATTGAGATG-CAAAAGTGCTACAAATTGAAG-TGCTTAAATGCTGTAAA
*
62347792 TTGAAGT-TGTAAATTGCTGCAAATTGAAGTGTTTGGAATGCTGACAAATTGAAG-GTTTAAATG
63 -TGAAGTGT-TAAAGTGCTGCAAATTGAAGTGTTT-GAATGCTGACAAATTGAAGTGTTTAAATG
62347855 CTTGTAAAATTGAAGTGCTTAAATG-TGCAAATTTGAAGTGTTTAAGAGTCTGAAATTGTAGCTG
125 C-TGTAAAATTGAAGTGCTTAAATGCTGCAAA-TTGAAGTGTTTAA-AGTCTGAAATTGTAG-TG
*
62347919 GTTAGTTGCTCGGCATGGAGATGTTTATCGCTGTTA
186 GTTAGTTGCTCGGCATTGAGATGTTTAT-GCTGTTA
* *
62347955 -TA-AATGTTTGTTAATTGACGATGCAATAGTGCTACAAATTG-AGCTGC-T-AGTGCTGTAAAT
1 GTATAATGTTTGTTAATTGA-GATGCAAAAGTGCTACAAATTGAAG-TGCTTAAATGCTGTAAA-
* *
62348015 TGAAGTGTTAAAAGTGATTGCAAATTGATAGTGTTTTGAATGGCT-ATAAATTGAAGTGTTTAAA
63 TGAAGTGTT-AAAGTG-CTGCAAATTGA-AGTG-TTTGAAT-GCTGACAAATTGAAGTGTTTAAA
* * *
62348079 GGCTGTAAAATTGATTGTGCTTAAATGCTCTGCAAATTGAAGTG-TT-AAGTACTGCAAATTGAA
123 TGCTGTAAAATTGA-AGTGCTTAAATG--CTGCAAATTGAAGTGTTTAAAGT-CTG-AAATTGTA
* * *
62348142 GTGTTTAG-TG-TGCGACATTGAGATTTTTATGCTGTAATTA
183 GTGGTTAGTTGCT-CGGCATTGAGATGTTTATGCTG---TTA
*
62348182 CGGTATAATGTTTGTTAATTGAGATGTAAAAGTGCTACAAATTGAAGTGCTTAAATGCTGTAAAT
1 --GTATAATGTTTGTTAATTGAGATGCAAAAGTGCTACAAATTGAAGTGCTTAAATGCTGTAAAT
* * *
62348247 GAAGTGTTAAAGTGCTGCAAATTGAAATGTGTTGAATGCTG-CCAA-TGAAGTATTTAAATGCTG
64 GAAGTGTTAAAGTGCTGCAAATTGAAGTGT-TTGAATGCTGACAAATTGAAGTGTTTAAATGCTG
* * * *
62348310 T-AAATTGAAGTGCTTAAATGTTGCAAA-TGAAGTGTTTAAACTCT-AAAATGTAGT-GTTTGTT
128 TAAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTTAAAGTCTGAAATTGTAGTGGTTAGTT
62348371 GCT-GGACATTGAGATGTTTTATGCTG-TA
193 GCTCGG-CATTGAGATG-TTTATGCTGTTA
* * * * *
62348399 AT-TGAGGTGTT-TAAATGTTGTA-ATG-AATTAGTG----AAA-T--AGT-C-TAAAT-CTGT-
1 GTATAATGT-TTGTTAA--TTG-AGATGCAA-AAGTGCTACAAATTGAAGTGCTTAAATGCTGTA
*
62348449 AATGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCT-ATAAATTG-AGTGTTTAAATGC
61 AATGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGACAAATTGAAGTGTTTAAATGC
* * * * * *
62348512 TGT--AATTGATGTGCTT-AACGTTGCACATTGAA-TGTCTT-AAGTACTGCAAATT-AAG-GTT
126 TGTAAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGT-TTAAAGT-CTG-AAATTGTAGTGGT
62348570 TAGTTGCT-GGACATTGAGA-GTTTCATCGCTGTAATTGA
188 TAGTTGCTCGG-CATTGAGATGTTT-AT-GCTG---TT-A
* ** *
62348608 GGTGTATAAATG-TTGTT-A-TGAGATG-TAAAGTGCTGTAAA-TGAAGTG--TAAAGTGCTGCA
1 ---GTAT-AATGTTTGTTAATTGAGATGCAAAAGTGCTACAAATTGAAGTGCTTAAA-TGCTGTA
* * * * * *
62348666 AATTGAAGTTGTTTGAA--GCTGCCAATTGAAGTGTTTAAATGCTG-TAAATTGAAATG-CTAAA
61 AA-TGAAG-TG-TTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGACAAATTGAAGTGTTTAAA
* * * * *
62348727 TGTTG-CAAATTGAAGTG-TTAAACTACTGC-AA-T-AAG-GTTT--TGTTGCTGGACATTG-AG
123 TGCTGTAAAATTGAAGTGCTTAAA-TGCTGCAAATTGAAGTGTTTAAAG-T-CT-GAAATTGTAG
* * * *
62348783 AT-G-T--TT-ATC-GC-GT-A-A--TTGACGCTG-TA
184 -TGGTTAGTTGCTCGGCATTGAGATGTTTATGCTGTTA
** *
62348809 -TA-AATG-TTGTTAATTGAGA-GTTTAAAGTGCTGCAAATT-AAGCT-CTTAAATGCTGTAAAT
1 GTATAATGTTTGTTAATTGAGATG-CAAAAGTGCTACAAATTGAAG-TGCTTAAATGCTGTAAA-
* * *
62348868 TGAAGTGTTAAAGTGCTGC-AATTGAAGTGTTTGAATTGC-CATAAATAT-TAGTGTTTAAATGC
63 TGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAA-TGCTGACAAAT-TGAAGTGTTTAAATGC
* * * * * *
62348930 TGT-AAA-TGATTATTGCTTAAATGTTGCAAATT-AAGTTTTTTAAGTACTGCAAATTGAAGTGT
126 TGTAAAATTGA--AGTGCTTAAATGCTGCAAATTGAAGTGTTTAAAGT-CTG-AAATTGTAGTGG
*
62348992 TTAGTTGCT-GACA-TGAGATGTTTTATCGCTGTAATTA
187 TTAGTTGCTCGGCATTGAGATG-TTTAT-GCTG---TTA
* * *
62349029 TGTGTATAAAG-TT-TTAA-T-AGATGTAAAA-TGCTGCAAATTGAAGTGCTTAAATGCTGTAAA
1 ---GTATAATGTTTGTTAATTGAGATGCAAAAGTGCTACAAATTGAAGTGCTTAAATGCTGTAAA
* *
62349089 TTGAAAGTGTTAAAGTGCTGC-AATTGAAGTTTTTGAATGCTG--AAATTGAATTGTTTAAATGC
63 -TG-AAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGACAAATTGAAGTGTTTAAATGC
* *
62349151 TAT-AAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTA
126 TGTAAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTTA
62349192 GGACTGAAAA
Statistics
Matches: 986, Mismatches: 109, Indels: 290
0.71 0.08 0.21
Matches are distributed among these distances:
195 9 0.01
196 2 0.00
197 11 0.01
198 33 0.03
199 35 0.04
200 16 0.02
201 8 0.01
202 26 0.03
203 27 0.03
204 55 0.06
205 47 0.05
206 11 0.01
207 7 0.01
208 9 0.01
209 13 0.01
210 4 0.00
211 3 0.00
212 13 0.01
213 4 0.00
214 18 0.02
215 10 0.01
216 29 0.03
217 10 0.01
218 47 0.05
219 21 0.02
220 49 0.05
221 57 0.06
222 61 0.06
223 44 0.04
224 41 0.04
225 86 0.09
226 59 0.06
227 19 0.02
228 17 0.02
229 16 0.02
230 31 0.03
231 28 0.03
232 10 0.01
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (220 bp):
GTATAATGTTTGTTAATTGAGATGCAAAAGTGCTACAAATTGAAGTGCTTAAATGCTGTAAATGA
AGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGACAAATTGAAGTGTTTAAATGCTGTAA
AATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTTAAAGTCTGAAATTGTAGTGGTTAGTTGCT
CGGCATTGAGATGTTTATGCTGTTA
Found at i:62348309 original size:46 final size:45
Alignment explanation
Indices: 62348210--62348349 Score: 167
Period size: 45 Copynumber: 3.1 Consensus size: 45
62348200 TTGAGATGTA
* * *
62348210 AAAGTGCTACAAATTGAAGTGCTTAAATGCTGTAAATGAAGTGTT
1 AAAGTGCTGCAAATTGAAGTGCTTAAATGCTGCAAATGAAGTTTT
* *
62348255 AAAGTGCTGCAAATTGAAATGTG-TTGAATGCTGCCAATGAAGTATTT
1 AAAGTGCTGCAAATTG-AA-GTGCTTAAATGCTGCAAATGAAGT-TTT
* *
62348302 AAA-TGCTGTAAATTGAAGTGCTTAAATGTTGCAAATGAAGTGTTT
1 AAAGTGCTGCAAATTGAAGTGCTTAAATGCTGCAAATGAAGT-TTT
62348347 AAA
1 AAA
62348350 CTCTAAAATG
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
44 3 0.04
45 40 0.49
46 30 0.37
47 8 0.10
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (45 bp):
AAAGTGCTGCAAATTGAAGTGCTTAAATGCTGCAAATGAAGTTTT
Found at i:62348348 original size:22 final size:23
Alignment explanation
Indices: 62348005--62349191 Score: 264
Period size: 22 Copynumber: 52.9 Consensus size: 23
62347995 GAGCTGCTAG
* *
62348005 TGCTGTAAATTGAAGTGTTAAAA
1 TGCTGCAAATTGAAGTGTTTAAA
* *
62348028 GTGATTGCAAATTGATAGTGTTTTGAA
1 -TG-CTGCAAATTGA-AGTG-TTTAAA
**
62348055 TGGCTATAAATTGAAGTGTTTAAA
1 T-GCTGCAAATTGAAGTGTTTAAA
* * * *
62348079 GGCTGTAAAATTGATTGTGCTTAAA
1 TGCTG-CAAATTGA-AGTGTTTAAA
*
62348104 TGCTCTGCAAATTGAAGTG-TTAAG
1 TG--CTGCAAATTGAAGTGTTTAAA
* *
62348128 TACTGCAAATTGAAGTGTTT-AG
1 TGCTGCAAATTGAAGTGTTTAAA
* *
62348150 TG-TGCGACATTG-AGAT-TTT-TA
1 TGCTGC-AAATTGAAG-TGTTTAAA
* * *
62348171 TGCTG-TAATT-ACG-GTAT-AA
1 TGCTGCAAATTGAAGTGTTTAAA
* ** *
62348190 TGTTTGTTAATTG-AGATG-TAAAA
1 TG-CTGCAAATTGAAG-TGTTTAAA
* *
62348213 GTGCTACAAATTGAAGTGCTTAAA
1 -TGCTGCAAATTGAAGTGTTTAAA
*
62348237 TGCTGTAAA-TGAAGTG-TTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
* *
62348258 GTGCTGCAAATTGAAATGTGTTGAA
1 -TGCTGCAAATTGAAGTGT-TTAAA
* *
62348283 TGCTGCCAA-TGAAGTATTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
* *
62348305 TGCTGTAAATTGAAGTGCTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
*
62348328 TGTTGCAAA-TGAAGTGTTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
* * **
62348350 --CT-CTAAAATGTAGTGTTT-GT
1 TGCTGC-AAATTGAAGTGTTTAAA
* * *
62348370 TGCTGGACATTG-AGATGTTT-TA
1 TGCTGCAAATTGAAG-TGTTTAAA
* *
62348392 TGCTG-TAATTGAGGTGTTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
* * * *
62348414 TGTTG-TAA-TGAATTAG-TGAAA
1 TGCTGCAAATTGAAGT-GTTTAAA
*
62348435 TAG-T-CTAAATCTGTAATGAAGTGTTAAA
1 T-GCTGC-AAAT-TG-AA-G-TGT-TTAAA
*
62348463 GTGCTGCAAATTGAAGTGTTTGAA
1 -TGCTGCAAATTGAAGTGTTTAAA
**
62348487 TGCTATAAATTG-AGTGTTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
* * *
62348509 TGCTG-TAATTGATGTGCTT-AA
1 TGCTGCAAATTGAAGTGTTTAAA
* * * *
62348530 CGTTGCACATTGAA-TGTCTTAAG
1 TGCTGCAAATTGAAGTGT-TTAAA
* **
62348553 TACTGCAAATT-AAG-GTTTAGT
1 TGCTGCAAATTGAAGTGTTTAAA
* * * *
62348574 TGCTGGACATTG-AGAGTTT-CA
1 TGCTGCAAATTGAAGTGTTTAAA
* * *
62348595 TCGCTG-TAATTGAGGTGTATAAA
1 T-GCTGCAAATTGAAGTGTTTAAA
* **
62348618 TGTTG-TTA-TG-AGATG--TAAA
1 TGCTGCAAATTGAAG-TGTTTAAA
*
62348637 GTGCTGTAAA-TGAAGTG--TAAA
1 -TGCTGCAAATTGAAGTGTTTAAA
*
62348658 GTGCTGCAAATTGAAGTTGTTTGAA
1 -TGCTGCAAATTGAAG-TGTTTAAA
*
62348683 -GCTGCCAATTGAAGTGTTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
* * *
62348705 TGCTGTAAATTGAAATG-CTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
*
62348727 TGTTGCAAATTGAAGTG-TTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
* ***
62348749 CTACTGC-AA-T-AAG-GTTTTGT
1 -TGCTGCAAATTGAAGTGTTTAAA
* *
62348769 TGCTGGACATTG-AGATGTTT--A
1 TGCTGCAAATTGAAG-TGTTTAAA
* * *
62348790 T-C-GCGTAATTGACGCTGTATAAA
1 TGCTGC-AAATTGAAG-TGTTTAAA
* ** *
62348813 TGTTGTTAATTG-AGAGTTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
*
62348835 GTGCTGCAAATT-AAGCT-CTTAAA
1 -TGCTGCAAATTGAAG-TGTTTAAA
*
62348858 TGCTGTAAATTGAAGTG-TTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
*
62348880 GTGCTGC-AATTGAAGTGTTTGAAT
1 -TGCTGCAAATTGAAGTGTTT-AAA
*** *
62348904 TGCCATAAATAT-TAGTGTTTAAA
1 TGCTGCAAAT-TGAAGTGTTTAAA
* * *
62348927 TGCTGTAAA-TGATTATTGCTTAAA
1 TGCTGCAAATTGA--AGTGTTTAAA
* * *
62348951 TGTTGCAAATT-AAGTTTTTTAAG
1 TGCTGCAAATTGAAG-TGTTTAAA
* **
62348974 TACTGCAAATTGAAGTGTTTAGT
1 TGCTGCAAATTGAAGTGTTTAAA
* *
62348997 TGCTG-ACA-TG-AGATGTTT-TA
1 TGCTGCAAATTGAAG-TGTTTAAA
* * *
62349017 TCGCTG-TAATT-ATGTGTATAAA
1 T-GCTGCAAATTGAAGTGTTTAAA
*** * *
62349039 -G-TTTTAATAG-A-TG-TAAAA
1 TGCTGCAAATTGAAGTGTTTAAA
*
62349057 TGCTGCAAATTGAAGTGCTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
*
62349080 TGCTGTAAATTGAAAGTG-TTAAA
1 TGCTGCAAATTG-AAGTGTTTAAA
* *
62349103 GTGCTGC-AATTGAAGTTTTTGAA
1 -TGCTGCAAATTGAAGTGTTTAAA
*
62349126 TGCTG-AAATTGAATTGTTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
** *
62349148 TGCTATAAATTGAAGTGCTTAAA
1 TGCTGCAAATTGAAGTGTTTAAA
*
62349171 TGTTGCAAATTGAAGTGTTTA
1 TGCTGCAAATTGAAGTGTTTA
62349192 GGACTGAAAA
Statistics
Matches: 842, Mismatches: 206, Indels: 231
0.66 0.16 0.18
Matches are distributed among these distances:
18 3 0.00
19 20 0.02
20 39 0.05
21 131 0.16
22 243 0.29
23 233 0.28
24 88 0.10
25 39 0.05
26 22 0.03
27 10 0.01
28 7 0.01
29 6 0.01
30 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.37
Consensus pattern (23 bp):
TGCTGCAAATTGAAGTGTTTAAA
Found at i:62348490 original size:23 final size:23
Alignment explanation
Indices: 62348451--62349191 Score: 209
Period size: 23 Copynumber: 33.5 Consensus size: 23
62348441 AAATCTGTAA
62348451 TGAAGTG-TTAAAGTGCTGCAAAT
1 TGAAGTGTTTAAA-TGCTGCAAAT
* **
62348474 TGAAGTGTTTGAATGCTATAAAT
1 TGAAGTGTTTAAATGCTGCAAAT
*
62348497 TG-AGTGTTTAAATGCTG-TAAT
1 TGAAGTGTTTAAATGCTGCAAAT
* * * * *
62348518 TGATGTGCTT-AACGTTGCACAT
1 TGAAGTGTTTAAATGCTGCAAAT
* *
62348540 TGAA-TGTCTTAAGTACTGCAAAT
1 TGAAGTGT-TTAAATGCTGCAAAT
** * *
62348563 T-AAG-GTTTAGTTGCTGGACAT
1 TGAAGTGTTTAAATGCTGCAAAT
* * *
62348584 TG-AGAGTTT-CATCGCTG-TAAT
1 TGAAGTGTTTAAAT-GCTGCAAAT
* * * **
62348605 TGAGGTGTATAAATGTTG-TTA-
1 TGAAGTGTTTAAATGCTGCAAAT
*
62348626 TG-AGATG--TAAAGTGCTGTAAA-
1 TGAAG-TGTTTAAA-TGCTGCAAAT
62348647 TGAAGTG--TAAAGTGCTGCAAAT
1 TGAAGTGTTTAAA-TGCTGCAAAT
* *
62348669 TGAAGTTGTTTGAA-GCTGCCAAT
1 TGAAG-TGTTTAAATGCTGCAAAT
*
62348692 TGAAGTGTTTAAATGCTGTAAAT
1 TGAAGTGTTTAAATGCTGCAAAT
* * *
62348715 TGAAATG-CTAAATGTTGCAAAT
1 TGAAGTGTTTAAATGCTGCAAAT
*
62348737 TGAAGTG-TTAAACTACTGC-AA-
1 TGAAGTGTTTAAA-TGCTGCAAAT
*** * *
62348758 T-AAG-GTTTTGTTGCTGGACAT
1 TGAAGTGTTTAAATGCTGCAAAT
*
62348779 TG-AGATGTTT--AT-C-GCGTAAT
1 TGAAG-TGTTTAAATGCTGC-AAAT
* * * **
62348799 TGACGCTGTATAAATGTTGTTAAT
1 TGAAG-TGTTTAAATGCTGCAAAT
*
62348823 TG-AGAGTTTAAAGTGCTGCAAAT
1 TGAAGTGTTTAAA-TGCTGCAAAT
* *
62348846 T-AAGCT-CTTAAATGCTGTAAAT
1 TGAAG-TGTTTAAATGCTGCAAAT
62348868 TGAAGTG-TTAAAGTGCTGC-AAT
1 TGAAGTGTTTAAA-TGCTGCAAAT
* ***
62348890 TGAAGTGTTTGAATTGCCATAAAT
1 TGAAGTGTTT-AAATGCTGCAAAT
* *
62348914 AT-TAGTGTTTAAATGCTGTAAA-
1 -TGAAGTGTTTAAATGCTGCAAAT
* * *
62348936 TGATTATTGCTTAAATGTTGCAAAT
1 TGA--AGTGTTTAAATGCTGCAAAT
* * *
62348961 T-AAGTTTTTTAAGTACTGCAAAT
1 TGAAG-TGTTTAAATGCTGCAAAT
** *
62348984 TGAAGTGTTTAGTTGCTG-ACA-
1 TGAAGTGTTTAAATGCTGCAAAT
* *
62349005 TG-AGATGTTT-TATCGCTG-TAAT
1 TGAAG-TGTTTAAAT-GCTGCAAAT
* * ***
62349027 T-ATGTGTATAAA-G-TTTTAAT
1 TGAAGTGTTTAAATGCTGCAAAT
* *
62349047 AG-A-TG-TAAAATGCTGCAAAT
1 TGAAGTGTTTAAATGCTGCAAAT
* *
62349067 TGAAGTGCTTAAATGCTGTAAAT
1 TGAAGTGTTTAAATGCTGCAAAT
62349090 TGAAAGTG-TTAAAGTGCTGC-AAT
1 TG-AAGTGTTTAAA-TGCTGCAAAT
* *
62349113 TGAAGTTTTTGAATGCTG-AAAT
1 TGAAGTGTTTAAATGCTGCAAAT
* **
62349135 TGAATTGTTTAAATGCTATAAAT
1 TGAAGTGTTTAAATGCTGCAAAT
* *
62349158 TGAAGTGCTTAAATGTTGCAAAT
1 TGAAGTGTTTAAATGCTGCAAAT
62349181 TGAAGTGTTTA
1 TGAAGTGTTTA
62349192 GGACTGAAAA
Statistics
Matches: 520, Mismatches: 132, Indels: 132
0.66 0.17 0.17
Matches are distributed among these distances:
18 3 0.01
19 14 0.03
20 29 0.06
21 80 0.15
22 150 0.29
23 187 0.36
24 51 0.10
25 6 0.01
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.37
Consensus pattern (23 bp):
TGAAGTGTTTAAATGCTGCAAAT
Found at i:62348649 original size:21 final size:21
Alignment explanation
Indices: 62348631--62348674 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
62348621 TGTTATGAGA
*
62348631 TGTAAAGTGCTGTAAATGAAG
1 TGTAAAGTGCTGCAAATGAAG
62348652 TGTAAAGTGCTGCAAATTGAAG
1 TGTAAAGTGCTGCAAA-TGAAG
62348674 T
1 T
62348675 TGTTTGAAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (21 bp):
TGTAAAGTGCTGCAAATGAAG
Found at i:62348780 original size:195 final size:198
Alignment explanation
Indices: 62348233--62348899 Score: 653
Period size: 195 Copynumber: 3.3 Consensus size: 198
62348223 TTGAAGTGCT
*
62348233 TAAA-TGCTGTAAATGAAGTGTTAAAGTGCTGCAAATTGAAATGTGTTGAATGCTGCCAA-TGAA
1 TAAAGTGCTGTAAATGAAGTG-TAAAGTGCTGCAAATTGAAGTGT-TTGAA-GCTGCCAATTGAA
* * * * *
62348296 GTATTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAA-TGAAGTGTTTAAACT-CT-AAAA
63 GTGTTTAAATGCTGT-AATTGAAATGC-TAAACGTTGCAAATTGAA-TGTCTAAACTACTGCAAA
* *
62348358 TGT-AGTGTTT-GTTGCTGGACATTGAGATGTTTTAT-GCTGTAATTGA-GGTGTTTAAATGTTG
125 T-TAAG-GTTTAGTTGCTGGACATTGAGATG-TTTATCGC-GTAATTGACGCTGTATAAATGTTG
* *
62348419 TAATGAATTAGTGAAATAGTC
186 T--T-AA-T--TG--AGAGTG
***
62348440 TAAA-T-CTGT-AATGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTATAAATTG-AG
1 TAAAGTGCTGTAAATGAAGTG-TAAAGTGCTGCAAATTGAAGTGTTTGAA-GCTGCCAATTGAAG
** * * * *
62348501 TGTTTAAATGCTGTAATTGATGTGCTTAACGTTGCACATTGAATGTCTTAAGTACTGCAAATTAA
64 TGTTTAAATGCTGTAATTGAAATGCTAAACGTTGCAAATTGAATGTCTAAACTACTGCAAATTAA
*
62348566 GGTTTAGTTGCTGGACATTGAGA-GTTTCATCGCTGTAATTGA-GGTGTATAAATGTTGTT-A-T
129 GGTTTAGTTGCTGGACATTGAGATGTTT-ATCGC-GTAATTGACGCTGTATAAATGTTGTTAATT
62348627 GAGA-TG
192 GAGAGTG
62348633 TAAAGTGCTGTAAATGAAGTGTAAAGTGCTGCAAATTGAAGTTGTTTGAAGCTGCCAATTGAAGT
1 TAAAGTGCTGTAAATGAAGTGTAAAGTGCTGCAAATTGAAG-TGTTTGAAGCTGCCAATTGAAGT
*
62348698 GTTTAAATGCTGTAAATTGAAATGCTAAATGTTGCAAATTGAAGTGT-TAAACTACTGC-AA-TA
65 GTTTAAATGCTGT-AATTGAAATGCTAAACGTTGCAAATTGAA-TGTCTAAACTACTGCAAATTA
*
62348760 AGGTTTTGTTGCTGGACATTGAGATGTTTATCGCGTAATTGACGCTGTATAAATGTTGTTAATTG
128 AGGTTTAGTTGCTGGACATTGAGATGTTTATCGCGTAATTGACGCTGTATAAATGTTGTTAATTG
*
62348825 AGAGTT
193 AGAGTG
* * * * *
62348831 TAAAGTGCTGCAAATTAAGCTCTTAAA-TGCTGTAAATTGAAGTG-TTAAAG-TGCTGCAATTGA
1 TAAAGTGCTGTAAATGAAG-T-GTAAAGTGCTGCAAATTGAAGTGTTTGAAGCTGC--CAATTGA
62348893 AGTGTTT
62 AGTGTTT
62348900 GAATTGCCAT
Statistics
Matches: 402, Mismatches: 34, Indels: 57
0.82 0.07 0.12
Matches are distributed among these distances:
193 5 0.01
194 11 0.03
195 78 0.19
196 45 0.11
197 43 0.11
198 37 0.09
199 15 0.04
200 5 0.01
202 21 0.05
203 24 0.06
204 75 0.19
205 34 0.08
206 4 0.01
207 5 0.01
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (198 bp):
TAAAGTGCTGTAAATGAAGTGTAAAGTGCTGCAAATTGAAGTGTTTGAAGCTGCCAATTGAAGTG
TTTAAATGCTGTAATTGAAATGCTAAACGTTGCAAATTGAATGTCTAAACTACTGCAAATTAAGG
TTTAGTTGCTGGACATTGAGATGTTTATCGCGTAATTGACGCTGTATAAATGTTGTTAATTGAGA
GTG
Found at i:62349147 original size:68 final size:69
Alignment explanation
Indices: 62349055--62349186 Score: 189
Period size: 68 Copynumber: 1.9 Consensus size: 69
62349045 ATAGATGTAA
*
62349055 AATGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAAGTG-TTAAAGTGCTGC-AATTGAAG
1 AATGCTGCAAATTGAAGTGCTTAAATGCTATAAATTG-AAGTGCTTAAA-TGCTGCAAATTGAAG
62349118 TTTTTG
64 TTTTTG
* * *
62349124 AATGCTG-AAATTGAATTGTTTAAATGCTATAAATTGAAGTGCTTAAATGTTGCAAATTGAAGT
1 AATGCTGCAAATTGAAGTGCTTAAATGCTATAAATTGAAGTGCTTAAATGCTGCAAATTGAAGT
62349187 GTTTAGGACT
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
67 10 0.18
68 40 0.70
69 7 0.12
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.36
Consensus pattern (69 bp):
AATGCTGCAAATTGAAGTGCTTAAATGCTATAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTT
TTTG
Found at i:62349608 original size:63 final size:65
Alignment explanation
Indices: 62349541--62349666 Score: 170
Period size: 63 Copynumber: 2.0 Consensus size: 65
62349531 AGATGTAAAG
62349541 TGCTGCAAATTGAAGTGCTTAAATGCT-GAAATTAAGT-TTAAAT-CTGC-AATTGAAGTGTTTG
1 TGCTGCAAATTGAAGTG-TTAAATGCTAGAAATTAA-TATTAAATGCTGCAAATTGAAGTGTTTG
62349602 AA
64 AA
* * *
62349604 TGCTGCAAATTGAAGTGTTTAATGCTATAAATTAATACTTAAATGTTGCAAATTGAAGTGTTT
1 TGCTGCAAATTGAAGTGTTAAATGCTAGAAATTAATA-TTAAATGCTGCAAATTGAAGTGTTT
62349667 AAGACTAAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
62 9 0.16
63 24 0.44
64 6 0.11
65 3 0.05
66 13 0.24
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (65 bp):
TGCTGCAAATTGAAGTGTTAAATGCTAGAAATTAATATTAAATGCTGCAAATTGAAGTGTTTGAA
Found at i:62349790 original size:23 final size:22
Alignment explanation
Indices: 62349764--62349877 Score: 129
Period size: 23 Copynumber: 5.0 Consensus size: 22
62349754 AAGTCTGCAA
*
62349764 TGAAGTCTTAAATGCTGTAAAAT
1 TGAAGTCTTAAATGCTG-CAAAT
*
62349787 TGAAGTGTTAAAGTGCTGCAAAT
1 TGAAGTCTTAAA-TGCTGCAAAT
* *
62349810 TGAAGTGTTTGAATGCTGCAAAT
1 TGAAGT-CTTAAATGCTGCAAAT
* *
62349833 TGAAGTTTTAAATGCTGTAAAT
1 TGAAGTCTTAAATGCTGCAAAT
*
62349855 TGAAGTCTTAAAATGTTGCAAAT
1 TGAAGTCTT-AAATGCTGCAAAT
62349878 GAGTGTTTAA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
22 22 0.28
23 48 0.61
24 9 0.11
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (22 bp):
TGAAGTCTTAAATGCTGCAAAT
Found at i:62349875 original size:45 final size:45
Alignment explanation
Indices: 62349753--62349897 Score: 142
Period size: 45 Copynumber: 3.3 Consensus size: 45
62349743 TTGAGATGTA
*
62349753 AAAGT-CTGC-AA-TGAAGTCTTAAATGCTGTAAAATTGAAGTGTT
1 AAAGTGCTGCAAATTGAAGTCTTAAATGCTG-CAAATTGAAGTGTT
* * *
62349796 AAAGTGCTGCAAATTGAAGTGTTTGAATGCTGCAAATTGAAGTTTT
1 AAAGTGCTGCAAATTGAAGT-CTTAAATGCTGCAAATTGAAGTGTT
* *
62349842 AAA-TGCTGTAAATTGAAGTCTTAAAATGTTGCAAA-TG-AGTGTT
1 AAAGTGCTGCAAATTGAAGTCTT-AAATGCTGCAAATTGAAGTGTT
* *
62349885 TAAGT-CTGAAAAT
1 AAAGTGCTGCAAAT
62349898 GTATGTTTAG
Statistics
Matches: 85, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
43 19 0.22
44 9 0.11
45 27 0.32
46 21 0.25
47 9 0.11
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (45 bp):
AAAGTGCTGCAAATTGAAGTCTTAAATGCTGCAAATTGAAGTGTT
Found at i:62350091 original size:73 final size:70
Alignment explanation
Indices: 62349982--62350121 Score: 160
Period size: 73 Copynumber: 2.0 Consensus size: 70
62349972 ATTAGTGCCT
*
62349982 AATGCTGTAAATTGAAGGTGTTAAAGTGTTCAAATTGAAGTGTTTGAATGTACTATAAATTGAAG
1 AATGCTGTAAATTGAAGGTGTTAAAGTGTTCAAATTGAAG-GTTTGAA-GTACTACAAATTGAAG
62350047 TGTTATA
64 TGTTATA
* * *
62350054 AATGCCTGTAAATTG-ATGTGCTCTAAA-TGTTGC-AATTGAAGGTTTTAAGTACTGCAAATTGA
1 AATG-CTGTAAATTGAAGGTG-T-TAAAGTGTT-CAAATTGAAGGTTTGAAGTACTACAAATTGA
*
62350116 GGTGTT
62 AGTGTT
62350122 TAGTTGCTGG
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
71 17 0.29
72 14 0.24
73 23 0.39
74 5 0.08
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (70 bp):
AATGCTGTAAATTGAAGGTGTTAAAGTGTTCAAATTGAAGGTTTGAAGTACTACAAATTGAAGTG
TTATA
Found at i:62350241 original size:22 final size:23
Alignment explanation
Indices: 62349982--62350923 Score: 220
Period size: 23 Copynumber: 41.9 Consensus size: 23
62349972 ATTAGTGCCT
62349982 AATGCTGTAAATTGAAG-GTGTTA
1 AATGCTGTAAATTGAAGTGT-TTA
*
62350005 AA-G-TGTTCAAATTGAAGTGTTTG
1 AATGCTG-T-AAATTGAAGTGTTTA
*
62350028 AATGTACTATAAATTGAAGTGTTATA
1 AATG--CTGTAAATTGAAGTGTT-TA
* *
62350054 AATGCCTGTAAATTGATGTGCTCTA
1 AATG-CTGTAAATTGAAGTG-TTTA
* *
62350079 AATGTTG-CAATTGAAG-GTTTTA
1 AATGCTGTAAATTGAAGTG-TTTA
* * * *
62350101 AGTACTGCAAATTGAGGTGTTTA
1 AATGCTGTAAATTGAAGTGTTTA
** * *
62350124 GTTGCTGGACATTG-AGATGTTT-
1 AATGCTGTAAATTGAAG-TGTTTA
* *
62350146 TATCGCTGT-AATTGAGGTG-TTA
1 AAT-GCTGTAAATTGAAGTGTTTA
** *
62350168 AATG-TGTTTATTG-AGATG-TAA
1 AATGCTGTAAATTGAAG-TGTTTA
**
62350189 AAGTGCTACAAA-TGAAGTGTGTTTA
1 AA-TGCTGTAAATTGAA--GTGTTTA
62350214 AATGCTGTAAATTGAAGTG-TTA
1 AATGCTGTAAATTGAAGTGTTTA
* * * *
62350236 AGTGCTGCAAATTGAAATGTTTG
1 AATGCTGTAAATTGAAGTGTTTA
*
62350259 AATGCTGCAAATTGAA--GTTTA
1 AATGCTGTAAATTGAAGTGTTTA
*
62350280 AATGC-GT-AATTGAAGTGCTTA
1 AATGCTGTAAATTGAAGTGTTTA
* *
62350301 AATGTTGCAAA-TGAAGTGTTT-
1 AATGCTGTAAATTGAAGTGTTTA
*
62350322 AATACTGTAAATT-AAGTGTTT-
1 AATGCTGTAAATTGAAGTGTTTA
*
62350343 --TGCTG-ACA-TG-AGATGCTTT-
1 AATGCTGTAAATTGAAG-TG-TTTA
* *
62350362 -ATCGCTGT-AATTGAGGTGTATAA
1 AAT-GCTGTAAATTGAAGTGT-TTA
* * *
62350385 AATGTTGTTAATTGAAATG--TA
1 AATGCTGTAAATTGAAGTGTTTA
* * *
62350406 AAGGCTGCAAA-TGAAGTG-TTG
1 AATGCTGTAAATTGAAGTGTTTA
* *
62350427 AATGCTATAAATTGATGGTGTTTA
1 AATGCTGTAAATTGA-AGTGTTTA
* ** *
62350451 AAT-CTTGTAAAATGACTAAAAAGTGGGCTT
1 AATGC-TGT-AAAT---T--GAAGT-GTTTA
*
62350481 AAT--TG-CAATTGAAGTGTTTA
1 AATGCTGTAAATTGAAGTGTTTA
* * *
62350501 AGTACTGCAAATT-AAGTG-TTA
1 AATGCTGTAAATTGAAGTGTTTA
** * *
62350522 GTTGCTGGACA-TG-AGATGTTT-
1 AATGCTGTAAATTGAAG-TGTTTA
* * * *
62350543 TATCACTG--AATTGATGTGTATA
1 AAT-GCTGTAAATTGAAGTGTTTA
* * *
62350565 AATGTTGTTAATTG-AGATG-TAA
1 AATGCTGTAAATTGAAG-TGTTTA
62350587 AAGTGCTGTAAATTGAAGTG-TTA
1 AA-TGCTGTAAATTGAAGTGTTTA
* * *
62350610 AA-GTTGCAAATTGAAGTGTTGA
1 AATGCTGTAAATTGAAGTGTTTA
**
62350632 AA-GCTGCCAATTGAAGTGTTTA
1 AATGCTGTAAATTGAAGTGTTTA
62350654 AATGCTTGTAAATTGAA-TGCTTTA
1 AATGC-TGTAAATTGAAGTG-TTTA
* *
62350678 AATGTTGCAAATTGAAGTG-TT-
1 AATGCTGTAAATTGAAGTGTTTA
* *
62350699 -ATGACTGCAAATT-AAG-GTTTT
1 AATG-CTGTAAATTGAAGTGTTTA
** * *
62350720 GTTGCTGGACATTG-AGAT-TTT-
1 AATGCTGTAAATTGAAG-TGTTTA
* *
62350741 TATCGCTGT-AATTGAGGTGTTATA
1 AAT-GCTGTAAATTGAAGTGTT-TA
*
62350765 AATGTTGTTAAA-TGAAGATG--TA
1 AATGCTG-TAAATTGAAG-TGTTTA
* *
62350787 AA-GTCTGCAAATTGAAAGTGCTT-
1 AATG-CTGTAAATTG-AAGTGTTTA
62350810 AATGCGTGTAAATTGAAGTG-TT-
1 AATGC-TGTAAATTGAAGTGTTTA
* * *
62350832 AAGGCTGCAAACTTGAAGTGTTTG
1 AATGCTGTAAA-TTGAAGTGTTTA
* **
62350856 AATGGTGCCAATTGAAGTGTTTA
1 AATGCTGTAAATTGAAGTGTTTA
62350879 AATGCTGTAAATTGAAGTGCTTTA
1 AATGCTGTAAATTGAAGTG-TTTA
* *
62350903 AATGTTGCAAATCTG-AGTGTT
1 AATGCTGTAAAT-TGAAGTGTT
62350924 AAGACCTGAA
Statistics
Matches: 676, Mismatches: 142, Indels: 202
0.66 0.14 0.20
Matches are distributed among these distances:
17 3 0.00
18 4 0.01
19 15 0.02
20 28 0.04
21 141 0.21
22 142 0.21
23 174 0.26
24 96 0.14
25 51 0.08
26 10 0.01
27 1 0.00
28 3 0.00
29 2 0.00
30 6 0.01
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (23 bp):
AATGCTGTAAATTGAAGTGTTTA
Found at i:62350268 original size:23 final size:22
Alignment explanation
Indices: 62350208--62350342 Score: 86
Period size: 21 Copynumber: 6.2 Consensus size: 22
62350198 AAATGAAGTG
* *
62350208 TGTTTAAATGCTGTAAATTGAAG
1 TGTTT-AATGCTGCAAATTGAAA
62350231 TG-TTAAGTGCTGCAAATTGAAA
1 TGTTTAA-TGCTGCAAATTGAAA
62350253 TGTTTGAATGCTGCAAATTG-AA
1 TGTTT-AATGCTGCAAATTGAAA
* *
62350275 -GTTTAAATGC-G-TAATTGAAG
1 TGTTT-AATGCTGCAAATTGAAA
* * *
62350295 TGCTTAAATGTTGCAAA-TGAAG
1 TG-TTTAATGCTGCAAATTGAAA
* * *
62350317 TGTTTAATACTGTAAATT-AAG
1 TGTTTAATGCTGCAAATTGAAA
62350338 TGTTT
1 TGTTT
62350343 TGCTGACATG
Statistics
Matches: 91, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
19 5 0.05
20 2 0.02
21 34 0.37
22 30 0.33
23 18 0.20
24 2 0.02
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (22 bp):
TGTTTAATGCTGCAAATTGAAA
Found at i:62350293 original size:435 final size:421
Alignment explanation
Indices: 62349514--62350369 Score: 1116
Period size: 435 Copynumber: 2.0 Consensus size: 421
62349504 TAATTGAGGT
* *
62349514 TATAAATGTAGTAATTGAGATGTAAAGTGCTGCAAATTGAAGTGCTTAAATGCTGAAATTAAGTT
1 TATAAATGTAGTAATTGAGATGAAAAGTGCTGCAAATT-AAGTGCCTAAATGCTGAAATTAAGTT
*
62349579 TAAATCTGCAATTGAAGTGTTTGAATGCTGCAAATTGAAGTGTTTAATGCTATAAATTAATACTT
65 TAAATCTGCAATTGAAGTGTTTGAATGCTACAAATTGAAGTGTTTAATGCTATAAATTAATACTT
*
62349644 AAATGTTGCAAATTGAAGTGTTTAAGACTAAAATGTTAGTGTTTAGTTGCTGGACATGGAGATGT
130 AAATGTTGCAAATTGAAGTGTTTAAGACTAAAATGTGAGTGTTTAGTTGCTGGACATGGAGATGT
* *
62349709 TTTTACGCTGTAATTGAGGTGTATAATTTGTTAATTGAGATGTAAAAGTCTGCAATGAAGTCTTA
195 TTTTACGCTGTAATTGAGGTGTATAATGTGTTAATTGAGATGTAAAAGTCTACAATGAAGTCTTA
*
62349774 AATGCTGTAAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGCAAATTGAAGT
260 AATGCTGTAAAATTGAAGTGTTAAAGTGCTGCAAATTGAAATGTTTGAATGCTGCAAATTGAAGT
62349839 TTTAAATGCTGTAAATTGAAGT-CTTAAAATGTTGCAAATG-AGTGTTTAAGT-CTGAAAATGTA
325 TTTAAATGCTGTAAATTGAAGTGCTT-AAATGTTGCAAATGAAGTGTTTAA-TACTGAAAAT-TA
* *
62349901 TGT-TTAGTATGCTGACATGATATGCTTTATCGCTGTG
387 AGTGTT--T-TGCTGACATGAGATGCTTTATCGCTGTG
*
62349938 TATAAATGTTGTAATTGAGATGAAAAGTGCT-CAAATT-AGTGCCT-AATGCTGTAAATTGAAGG
1 TATAAATGTAGTAATTGAGATGAAAAGTGCTGCAAATTAAGTGCCTAAATGCTG-AAATT-AA-G
* * * *
62350000 TGTTAAAGTGTTCAAATTGAAGTGTTTGAATGTACTATAAATTGAAGTGTTATAAATGCCTGTAA
63 T-TTAAA-TCTGC-AATTGAAGTGTTTGAATG--CTACAAATTGAAGTGTT-T-AATG-CTATAA
* * *
62350065 ATTGATGTGCTCTAAATGTTGC-AATTGAAG-GTTTTAAGTACTGCAAAT-TGAGGTGTTTAGTT
120 ATT-A-ATACT-TAAATGTTGCAAATTGAAGTG-TTTAAG-ACT-AAAATGTGA-GTGTTTAGTT
* *
62350127 GCTGGACATTGAGATG-TTTTATCGCTGTAATTGAGGTGT-TAAATGTGTTTATTGAGATGTAAA
178 GCTGGACATGGAGATGTTTTTA-CGCTGTAATTGAGGTGTAT-AATGTGTTAATTGAGATGTAAA
*
62350190 AGTGCTACAAATGAAGTGTGTTTAAATGCTGT-AAATTGAAGTGTT-AAGTGCTGCAAATTGAAA
241 AGT-CTAC-AATGAA--GT-CTTAAATGCTGTAAAATTGAAGTGTTAAAGTGCTGCAAATTGAAA
62350253 TGTTTGAATGCTGCAAATTGAAG-TTTAAATGC-GT-AATTGAAGTGCTTAAATGTTGCAAATGA
301 TGTTTGAATGCTGCAAATTGAAGTTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATGA
*
62350315 AGTGTTTAATACTGTAAATTAAGTGTTTTGCTGACATGAGATGCTTTATCGCTGT
366 AGTGTTTAATACTGAAAATTAAGTGTTTTGCTGACATGAGATGCTTTATCGCTGT
62350370 AATTGAGGTG
Statistics
Matches: 382, Mismatches: 21, Indels: 49
0.85 0.05 0.11
Matches are distributed among these distances:
420 7 0.02
421 11 0.03
422 2 0.01
423 8 0.02
424 34 0.09
425 3 0.01
426 18 0.05
428 15 0.04
429 1 0.00
430 4 0.01
431 8 0.02
432 2 0.01
433 43 0.11
434 22 0.06
435 97 0.25
436 26 0.07
437 15 0.04
438 40 0.10
439 15 0.04
440 11 0.03
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.37
Consensus pattern (421 bp):
TATAAATGTAGTAATTGAGATGAAAAGTGCTGCAAATTAAGTGCCTAAATGCTGAAATTAAGTTT
AAATCTGCAATTGAAGTGTTTGAATGCTACAAATTGAAGTGTTTAATGCTATAAATTAATACTTA
AATGTTGCAAATTGAAGTGTTTAAGACTAAAATGTGAGTGTTTAGTTGCTGGACATGGAGATGTT
TTTACGCTGTAATTGAGGTGTATAATGTGTTAATTGAGATGTAAAAGTCTACAATGAAGTCTTAA
ATGCTGTAAAATTGAAGTGTTAAAGTGCTGCAAATTGAAATGTTTGAATGCTGCAAATTGAAGTT
TTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATGAAGTGTTTAATACTGAAAATTAAGTG
TTTTGCTGACATGAGATGCTTTATCGCTGTG
Found at i:62350310 original size:42 final size:45
Alignment explanation
Indices: 62350211--62350334 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 45
62350201 TGAAGTGTGT
* * *
62350211 TTAAATGCTGTAAATTGAAGTGTTAAGTGCTGCAAATTGAAATGT
1 TTAAATGCTGCAAATTGAAGTGTTAAATGCTGCAAATTGAAATGC
* * *
62350256 TTGAATGCTGCAAATTGAAGT-TTAAATGC-G-TAATTGAAGTGC
1 TTAAATGCTGCAAATTGAAGTGTTAAATGCTGCAAATTGAAATGC
* * * *
62350298 TTAAATGTTGCAAA-TGAAGTGTTTAATACTGTAAATT
1 TTAAATGCTGCAAATTGAAGTGTTAAATGCTGCAAATT
62350335 AAGTGTTTTG
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
41 6 0.09
42 27 0.42
43 2 0.03
44 11 0.17
45 19 0.29
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.36
Consensus pattern (45 bp):
TTAAATGCTGCAAATTGAAGTGTTAAATGCTGCAAATTGAAATGC
Found at i:62350415 original size:105 final size:104
Alignment explanation
Indices: 62350109--62350441 Score: 300
Period size: 105 Copynumber: 3.1 Consensus size: 104
62350099 TAAGTACTGC
*
62350109 AAATTGAGGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTTAAATGTG
1 AAATTGAAGTG-TTA-TTGCT-GACATTGAGATG-TTTATCGCTGTAATTGAGGTGTTAAATGTG
* * *
62350174 TTTATTGAGATGTAAAAGTGCTACAAATGAAGTGTGTTTAAATGCTGT
62 TTAATTGAAATGT-AAAG-GCTGCAAATGAA--GTGTTT-AATGCTGT
* * * * * *
62350222 AAATTGAAGTGTTAAGTGCTGCAAATTGAAATGTTTGAAT-GCTGCAAATTGAAGT-TTAAATGC
1 AAATTGAAGTGTT-ATTGCTG-ACATTGAGATGTTT--ATCGCTG-TAATTGAGGTGTTAAATGT
* * * *
62350285 G-TAATTGAAGTGCTTAAATGTTGCAAATGAAGTGTTTAATACTGT
61 GTTAATTGAAATG--TAAAGGCTGCAAATGAAGTGTTTAATGCTGT
62350330 AAATT-AAGTGTT-TTGCTGACA-TGAGATGCTTTATCGCTGTAATTGAGGTGTATAAAATGTTG
1 AAATTGAAGTGTTATTGCTGACATTGAGATG-TTTATCGCTGTAATTGAGGTGT-T-AAATG-TG
* *
62350392 TTAATTGAAATGTAAAGGCTGCAAATGAAGTGTTGAATGCTAT
62 TTAATTGAAATGTAAAGGCTGCAAATGAAGTGTTTAATGCTGT
62350435 AAATTGA
1 AAATTGA
62350442 TGGTGTTTAA
Statistics
Matches: 179, Mismatches: 26, Indels: 37
0.74 0.11 0.15
Matches are distributed among these distances:
102 10 0.06
103 11 0.06
104 6 0.03
105 41 0.23
106 2 0.01
107 17 0.09
108 12 0.07
109 6 0.03
111 22 0.12
112 30 0.17
113 22 0.12
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (104 bp):
AAATTGAAGTGTTATTGCTGACATTGAGATGTTTATCGCTGTAATTGAGGTGTTAAATGTGTTAA
TTGAAATGTAAAGGCTGCAAATGAAGTGTTTAATGCTGT
Found at i:62350677 original size:24 final size:23
Alignment explanation
Indices: 62350596--62350923 Score: 149
Period size: 24 Copynumber: 14.6 Consensus size: 23
62350586 AAAGTGCTGT
62350596 AAATTGAAGTG-TTAAA-GTTGC
1 AAATTGAAGTGTTTAAATGTTGC
* *
62350617 AAATTGAAGTGTTGAAA-GCTGC
1 AAATTGAAGTGTTTAAATGTTGC
* *
62350639 CAATTGAAGTGTTTAAATGCTTGT
1 AAATTGAAGTGTTTAAATG-TTGC
62350663 AAATTGAA-TGCTTTAAATGTTGC
1 AAATTGAAGTG-TTTAAATGTTGC
*
62350686 AAATTGAAGTG-TT--ATGACTGC
1 AAATTGAAGTGTTTAAATG-TTGC
*** * *
62350707 AAATT-AAG-GTTTTGTTGCTGG
1 AAATTGAAGTGTTTAAATGTTGC
* * *
62350728 ACATTG-AGAT-TTT-TATCGCTG-
1 AAATTGAAG-TGTTTAAAT-GTTGC
* * *
62350749 TAATTGAGGTGTTATAAATGTTGTT
1 AAATTGAAGTGTT-TAAATGTTG-C
62350774 AAA-TGAAGATG--TAAA-GTCTGC
1 AAATTGAAG-TGTTTAAATGT-TGC
* * *
62350795 AAATTGAAAGTGCTT-AATGCGTGT
1 AAATTG-AAGTGTTTAAATG-TTGC
* *
62350819 AAATTGAAGTG-TT-AAGGCTGC
1 AAATTGAAGTGTTTAAATGTTGC
* *
62350840 AAACTTGAAGTGTTTGAATGGTGC
1 AAA-TTGAAGTGTTTAAATGTTGC
* * *
62350864 CAATTGAAGTGTTTAAATGCTGT
1 AAATTGAAGTGTTTAAATGTTGC
62350887 AAATTGAAGTGCTTTAAATGTTGC
1 AAATTGAAGTG-TTTAAATGTTGC
62350911 AAATCTG-AGTGTT
1 AAAT-TGAAGTGTT
62350924 AAGACCTGAA
Statistics
Matches: 239, Mismatches: 36, Indels: 62
0.71 0.11 0.18
Matches are distributed among these distances:
19 1 0.00
20 8 0.03
21 44 0.18
22 60 0.25
23 59 0.25
24 61 0.26
25 6 0.03
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (23 bp):
AAATTGAAGTGTTTAAATGTTGC
Found at i:62350693 original size:23 final size:22
Alignment explanation
Indices: 62350596--62350698 Score: 120
Period size: 22 Copynumber: 4.6 Consensus size: 22
62350586 AAAGTGCTGT
62350596 AAATTGAAGTG-TTAAAGTTGC
1 AAATTGAAGTGTTTAAAGTTGC
* *
62350617 AAATTGAAGTGTTGAAAGCTGC
1 AAATTGAAGTGTTTAAAGTTGC
* *
62350639 CAATTGAAGTGTTTAAATGCTTGT
1 AAATTGAAGTGTTTAAA-G-TTGC
62350663 AAATTGAA-TGCTTTAAATGTTGC
1 AAATTGAAGTG-TTTAAA-GTTGC
62350686 AAATTGAAGTGTT
1 AAATTGAAGTGTT
62350699 ATGACTGCAA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
21 11 0.16
22 23 0.33
23 16 0.23
24 19 0.28
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (22 bp):
AAATTGAAGTGTTTAAAGTTGC
Found at i:62350693 original size:200 final size:202
Alignment explanation
Indices: 62349984--62350903 Score: 703
Period size: 200 Copynumber: 4.5 Consensus size: 202
62349974 TAGTGCCTAA
**
62349984 TGCTGTAAATTGAAGGTGTTAAAG-TGTTCAAATTGAAGTGTTTGAATGTACTATAAATTGAAGT
1 TGCTGTAAATTGAA-GTGTTAAAGCTG--CAAATTGAAGTG-TTGAATG--CTGCAAATTGAAGT
* * *
62350048 GTTATAAATGCCTGTAAATTGATGTGCTCTAAATGTTGCAATTGAAG-GTTTTAAGTACTGCAAA
60 GTT-TAAATGCTTGTAAATTGA-ATGCTTTAAATGTTGCAATTGAAGTG-TTTAAGTACTGCAAA
*
62350112 TTGAGGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTG-TTAAATG-TGT
122 TT-AAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGCTTAAATGTTGT
*
62350175 TTATTGAGATGTAAAAG
186 TAATTGAGATGTAAAAG
** * *
62350192 TGCTACAAA-TGAAGTGTGTTTAAATGCTGTAAATTGAAGTGTT-AAGTGCTGCAAATTGAAATG
1 TGCTGTAAATTGAA--GTG-TTAAA-GCTGCAAATTGAAGTGTTGAA-TGCTGCAAATTGAAGTG
* * * * * * ** *
62350255 TTTGAATGC-TGCAAATTGAA-G-TTTAAATG-CGTAATTGAAGTGCTTAAATGTTGCAAATGAA
61 TTTAAATGCTTGTAAATTGAATGCTTTAAATGTTGCAATTGAAGTGTTTAAGTACTGCAAATTAA
* * * * * * * *
62350316 GTGTTTA-ATACTGTAAATTAAG-TG-TTT-T-GCTG-ACA-TGAGATGCTT-TATCGCTG-TAA
126 GTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTA-ATTGAGGTGCTTAAAT-GTTGTTAA
* *
62350372 TTGAGGTGTATAAAA
189 TTGAGATGTA-AAAG
* * * ** *
62350387 TGTTGTTAATTGAAATG-TAAAGGCTGCAAA-TGAAGTGTTGAATGCTATAAATTGATGGTGTTT
1 TGCTGTAAATTGAAGTGTTAAA-GCTGCAAATTGAAGTGTTGAATGCTGCAAATTGA-AGTGTTT
*
62350450 AAAT-CTTGTAAAATGACTAAAAAGTGGGC-TT-AA--TTGCAATTGAAGTGTTTAAGTACTGCA
64 AAATGCTTGT-AAAT---T--GAA-T--GCTTTAAATGTTGCAATTGAAGTGTTTAAGTACTGCA
* *
62350510 AATTAAGTG-TTAGTTGCTGGACA-TGAGATGTTTTATCACTG-AATTGATGTG-TATAAATGTT
120 AATTAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGCT-TAAATGTT
62350571 GTTAATTGAGATGTAAAAG
184 GTTAATTGAGATGTAAAAG
* * *
62350590 TGCTGTAAATTGAAGTGTTAAAGTTGCAAATTGAAGTGTTGAAAGCTGCCAATTGAAGTGTTTAA
1 TGCTGTAAATTGAAGTGTTAAAGCTGCAAATTGAAGTGTTGAATGCTGCAAATTGAAGTGTTTAA
*
62350655 ATGCTTGTAAATTGAATGCTTTAAATGTTGCAAATTGAAGTG-TTATG-ACTGCAAATTAAG-GT
66 ATGCTTGTAAATTGAATGCTTTAAATGTTGC-AATTGAAGTGTTTAAGTACTGCAAATTAAGTGT
* * *
62350717 TTTGTTGCTGGACATTGAGAT-TTTTATCGCTGTAATTGAGGTGTTATAAATGTTGTTAAATGAA
130 TTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGCT-TAAATGTTGTTAATTG-A
62350781 GATGT-AAAG
193 GATGTAAAAG
* * * *
62350790 T-CTGCAAATTGAAAGTGCTTAATGCGTGTAAATTGAAGTGTT-AAGGCTGCAAACTTGAAGTGT
1 TGCTGTAAATTG-AAGTG-TTAAAGC-TGCAAATTGAAGTGTTGAATGCTGCAAA-TTGAAGTGT
* * ** * *
62350853 TTGAATG-GTGCCAATTGAAGTG-TTTAAATGCTGTAAATTGAAGTGCTTTAA
62 TTAAATGCTTGTAAATTGAA-TGCTTTAAATGTTG-CAATTGAAGTG-TTTAA
62350904 ATGTTGCAAA
Statistics
Matches: 565, Mismatches: 90, Indels: 119
0.73 0.12 0.15
Matches are distributed among these distances:
191 21 0.04
192 23 0.04
193 13 0.02
194 21 0.04
195 13 0.02
196 10 0.02
197 6 0.01
198 50 0.09
199 46 0.08
200 95 0.17
201 62 0.11
202 39 0.07
203 54 0.10
204 53 0.09
205 6 0.01
206 14 0.02
207 6 0.01
208 14 0.02
209 16 0.03
210 1 0.00
211 2 0.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (202 bp):
TGCTGTAAATTGAAGTGTTAAAGCTGCAAATTGAAGTGTTGAATGCTGCAAATTGAAGTGTTTAA
ATGCTTGTAAATTGAATGCTTTAAATGTTGCAATTGAAGTGTTTAAGTACTGCAAATTAAGTGTT
TAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGCTTAAATGTTGTTAATTGAGAT
GTAAAAG
Found at i:62350841 original size:45 final size:44
Alignment explanation
Indices: 62350593--62350926 Score: 128
Period size: 45 Copynumber: 7.4 Consensus size: 44
62350583 GTAAAAGTGC
* * * *
62350593 TGTAAATTGAAGTGTTAAAGTTGCAAATTGAAGTG-TTGAAAGC
1 TGTAAATTGAAGTGTTAAGGCTGCAAATTGAAGTGCTTGAATGG
** * * * *
62350636 TGCCAATTGAAGTGTTTAAATGCTTGTAAATTGAA-TGCTTTAAATGT
1 TGTAAATTGAAGTG-TT-AAGGC-TGCAAATTGAAGTGC-TTGAATGG
* * * * * *
62350683 TGCAAATTGAAGTGTTATGACTGCAAATT-AAG-GTTTTG-TTGC
1 TGTAAATTGAAGTGTTAAGGCTGCAAATTGAAGTG-CTTGAATGG
* * * * ** * * * * *
62350725 TGGACATTGAGATTTTTATCGCTG-TAATTGAGGTGTTATAAATGT
1 TGTAAATTGA-AGTGTTAAGGCTGCAAATTGAAGTGCT-TGAATGG
* *
62350770 TGTTAAA-TGAAGATGTAAAGTCTGCAAATTGAAAGTGCTT-AATGCG
1 TG-TAAATTGAAG-TGTTAAGGCTGCAAATTG-AAGTGCTTGAATG-G
*
62350816 TGTAAATTGAAGTGTTAAGGCTGCAAACTTGAAGTGTTTGAATGG
1 TGTAAATTGAAGTGTTAAGGCTGCAAA-TTGAAGTGCTTGAATGG
** * * * *
62350861 TGCCAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTTAAATGT
1 TGTAAATTGAAGTG-TT-AAGGCTGCAAATTGAAGTGC-TTGAATGG
*
62350908 TGCAAATCTG-AGTGTTAAG
1 TGTAAAT-TGAAGTGTTAAG
62350927 ACCTGAAAAT
Statistics
Matches: 215, Mismatches: 52, Indels: 46
0.69 0.17 0.15
Matches are distributed among these distances:
42 14 0.07
43 30 0.14
44 12 0.06
45 63 0.29
46 46 0.21
47 48 0.22
48 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (44 bp):
TGTAAATTGAAGTGTTAAGGCTGCAAATTGAAGTGCTTGAATGG
Found at i:62351101 original size:22 final size:22
Alignment explanation
Indices: 62351069--62351134 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
62351059 AAATTAAGTG
*
62351069 AATGCTATAAATTAGTGCTTTA
1 AATGCTGTAAATTAGTGCTTTA
*
62351091 AATGCTGTAAATGATGTGC-TTA
1 AATGCTGTAAATTA-GTGCTTTA
*
62351113 AATGTTGTAAATTAGTG-TTTA
1 AATGCTGTAAATTAGTGCTTTA
62351134 A
1 A
62351135 GCTACTGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
21 7 0.18
22 27 0.71
23 4 0.11
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41
Consensus pattern (22 bp):
AATGCTGTAAATTAGTGCTTTA
Found at i:62351266 original size:21 final size:21
Alignment explanation
Indices: 62351031--62351320 Score: 66
Period size: 22 Copynumber: 13.5 Consensus size: 21
62351021 GTGCCGTAAG
62351031 TGCTGTAAATTGAAGTGTTAAA
1 TGCTGTAAA-TGAAGTGTTAAA
* *
62351053 GTG-TGCAAATTAAGTG---AA
1 -TGCTGTAAATGAAGTGTTAAA
* *
62351071 TGCTATAAAT-TAGTGCTTTAAA
1 TGCTGTAAATGAAGTG--TTAAA
*
62351093 TGCTGTAAATGATGTGCTTAAA
1 TGCTGTAAATGAAGTG-TTAAA
* * *
62351115 TGTTGTAAAT-TAGTGTTTAAGC
1 TGCTGTAAATGAAGTG-TTAA-A
* * **
62351137 TACTGCAAATGAAGTGTTTAGT
1 TGCTGTAAATGAAGTG-TTAAA
* * **
62351159 TGCTGGACATTG-AGATGTTTTA
1 TGCTGTA-AATGAAG-TGTTAAA
* *
62351181 TCGCTGTAATTGAGGTGTATAAA
1 T-GCTGTAAATGAAGTGT-TAAA
* * *
62351204 -GTTGTAATTG-AGATGTAAAA
1 TGCTGTAAATGAAG-TGTTAAA
*
62351224 TGTCTGCAAATTGAA-TGCTTAAA
1 TG-CTGTAAA-TGAAGTG-TTAAA
*
62351247 TGCTGTAAATGAAGTGTTAAG
1 TGCTGTAAATGAAGTGTTAAA
* *
62351268 TGCTGCAAATTGAA-T-TTGAA
1 TGCTGTAAA-TGAAGTGTTAAA
* *
62351288 TGCTGCAAATTGATAGTATTTAAA
1 TGCTGTAAA-TGA-AGT-GTTAAA
62351312 TGCTG-AAAT
1 TGCTGTAAAT
62351321 TGAATGCTAA
Statistics
Matches: 198, Mismatches: 43, Indels: 53
0.67 0.15 0.18
Matches are distributed among these distances:
17 6 0.03
18 7 0.04
20 20 0.10
21 44 0.22
22 74 0.37
23 37 0.19
24 10 0.05
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (21 bp):
TGCTGTAAATGAAGTGTTAAA
Found at i:62351280 original size:43 final size:43
Alignment explanation
Indices: 62351221--62351349 Score: 142
Period size: 43 Copynumber: 3.0 Consensus size: 43
62351211 TTGAGATGTA
*
62351221 AAATGTCTGCAAATTGAATGCTTAAATGCTGTAAA-TGAAGTGTT
1 AAATG-CTGCAAATTGAATGCTT-AATGCTGCAAATTGAAGTGTT
* *
62351265 AAGTGCTGCAAATTGAAT--TTGAATGCTGCAAATTGATAGTATTT
1 AAATGCTGCAAATTGAATGCTT-AATGCTGCAAATTGA-AGT-GTT
*
62351309 AAATGCTG-AAATTGAATGC-TAATGTTGCAAATTGAAGTGTT
1 AAATGCTGCAAATTGAATGCTTAATGCTGCAAATTGAAGTGTT
62351350 TTCAACTACT
Statistics
Matches: 73, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
41 14 0.19
42 6 0.08
43 39 0.53
44 14 0.19
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.35
Consensus pattern (43 bp):
AAATGCTGCAAATTGAATGCTTAATGCTGCAAATTGAAGTGTT
Found at i:62351293 original size:20 final size:20
Alignment explanation
Indices: 62351222--62351349 Score: 100
Period size: 20 Copynumber: 6.0 Consensus size: 20
62351212 TGAGATGTAA
62351222 AATGTCTGCAAATTGAATGCTT
1 AATG-CTGCAAATTGAATG-TT
*
62351244 AAATGCTGTAAA-TGAAGTGTT
1 -AATGCTGCAAATTGAA-TGTT
62351265 AAGTGCTGCAAATTGAAT-TT
1 AA-TGCTGCAAATTGAATGTT
*
62351285 GAATGCTGCAAATTGATAGTATTT
1 -AATGCTGCAAATTGA-A-T-GTT
*
62351309 AAATGCTG-AAATTGAATGCT
1 -AATGCTGCAAATTGAATGTT
*
62351329 AATGTTGCAAATTGAAGTGTT
1 AATGCTGCAAATTGAA-TGTT
62351350 TTCAACTACT
Statistics
Matches: 88, Mismatches: 7, Indels: 22
0.75 0.06 0.19
Matches are distributed among these distances:
19 6 0.07
20 26 0.30
21 22 0.25
22 14 0.16
23 11 0.12
24 9 0.10
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (20 bp):
AATGCTGCAAATTGAATGTT
Found at i:62351300 original size:63 final size:64
Alignment explanation
Indices: 62351222--62351344 Score: 155
Period size: 63 Copynumber: 1.9 Consensus size: 64
62351212 TGAGATGTAA
* *
62351222 AATGTCTGCAAATTGA-A-TGCTTAAATGCTGTAAA-TGAAGTGTTAAGTGCTGCAAATTGAATT
1 AATGTCTGCAAATTGATAGTACTTAAATGCTG-AAATTGAA-TGCTAA-TGCTGCAAATTGAATT
62351284 TG
63 TG
* *
62351286 AATG-CTGCAAATTGATAGTATTTAAATGCTGAAATTGAATGCTAATGTTGCAAATTGAA
1 AATGTCTGCAAATTGATAGTACTTAAATGCTGAAATTGAATGCTAATGCTGCAAATTGAA
62351345 GTGTTTTCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
63 24 0.46
64 13 0.25
65 15 0.29
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (64 bp):
AATGTCTGCAAATTGATAGTACTTAAATGCTGAAATTGAATGCTAATGCTGCAAATTGAATTTG
Found at i:62351612 original size:224 final size:217
Alignment explanation
Indices: 62350590--62351624 Score: 871
Period size: 218 Copynumber: 4.7 Consensus size: 217
62350580 GATGTAAAAG
* ** *
62350590 TGCTGTAAATTGAAGTGTTAAAGT--TGCAAATTGAAGTGTTGAAAGCTGCCAATTGAAGTGTTT
1 TGCTGTAAATTGAAGTGTT-AAGTGCTGCAAATTGAAGTG-TG-ATGCT-ATAAATG-AGTGTTT
* *
62350653 AAATGCTTGTAAATTGAATGCTTTAAATGTTGCAAATTGAAGTG-TTAT-G-ACTGCAAATTAAG
61 AAATGC-TGTAAATTGATTGC-TT--ATGTTGCAAATTG-AGTGTTTATAGTACTGCAAATAAAG
* *
62350715 -GTTTTGTTGCTGGACATTGAGA--TTTTTATCGCTGTAATTGAGGTGTTATAAATGTTGTTAAA
121 TG-TTAGTTGCTGGACATTGAGATGTTTTTATCGCTGTAATTGAGGTG-TATAAATGTTG-TAAT
62350777 TGAAGATGTAAAGT-CTGCAAATTGAAAGTGCTT-AA
183 TG-AGATGTAAAGTGCTGCAAATTG-AAGTGCTTAAA
* ** *
62350812 TGCGTGTAAATTGAAGTGTTAAG-GCTGCAAACTTGAAGTGTTTGAATGGTGCCAATTGAAGTGT
1 TGC-TGTAAATTGAAGTGTTAAGTGCTGCAAA-TTGAAGTG--TG-ATGCT-ATAAATG-AGTGT
* *
62350876 TTAAATGCTGTAAATTGAAGTGCTTTAAATGTTGCAAATCTGAGTG-TTA-AG-ACCTGAAAATT
59 TTAAATGCTGTAAATTG-ATTGC-TT--ATGTTGCAAAT-TGAGTGTTTATAGTA-CTGCAAA-T
** *
62350938 GTAGTGTTTAGTTGCTGGACATGGA-ATTGTTTTTATCGC------TGA----T-TAAATGTTGT
117 AAAGTG-TTAGTTGCTGGACATTGAGA-TGTTTTTATCGCTGTAATTGAGGTGTATAAATGTTG-
* *
62350991 TAATTGAGATGTAAAGTGCTGCAAATTGAAGTGCCGTAAG
179 TAATTGAGATGTAAAGTGCTGCAAATTGAAGTG-CTTAAA
* *
62351031 TGCTGTAAATTGAAGTGTTAAAGTG-TGCAAATT-AAGTG-AATGCTATAAATTAGTGCTTTAAA
1 TGCTGTAAATTGAAGTGTT-AAGTGCTGCAAATTGAAGTGTGATGCTATAAATGAGTG-TTTAAA
* *
62351093 TGCTGTAAA-TGATGTGCTTAAATGTTGTAAATT-AGTGTTTA-AGCTACTGCAAATGAAGTGTT
64 TGCTGTAAATTGAT-TGCTT--ATGTTGCAAATTGAGTGTTTATAG-TACTGCAAATAAAGTG-T
62351155 TAGTTGCTGGACATTGAGATG-TTTTATCGCTGTAATTGAGGTGTATAAA-GTTGTAATTGAGAT
124 TAGTTGCTGGACATTGAGATGTTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTAATTGAGAT
*
62351218 GTAAAATGTCTGCAAATTGAA-TGCTTAAA
189 GTAAAGTG-CTGCAAATTGAAGTGCTTAAA
* ** *
62351247 TGCTGTAAA-TGAAGTGTTAAGTGCTGCAAATTGAA-TTTGAATGCTGCAAATTGATAGTATTTA
1 TGCTGTAAATTGAAGTGTTAAGTGCTGCAAATTGAAGTGTG-ATGCTATAAA-TG--AGTGTTTA
* * *
62351310 AATGCTG-AAATTGAATGCTAATGTTGCAAATTGAAGTGTTT-TCAACTACTGCTAAAATAATAG
62 AATGCTGTAAATTGATTGCTTATGTTGCAAATTG-AGTGTTTAT--AGTACTGC--AAATAA-AG
*
62351373 TGTTTGTTGCTGGACATTGAGATGTTTTTATCTGCTGTAATTGA-GTGTTATAAATGTTGTAATT
121 TGTTAGTTGCTGGACATTGAGATGTTTTTATC-GCTGTAATTGAGGTG-TATAAATGTTGTAATT
62351437 GAGATGTTTAAAGTGCTGCATAATTGAAGCT-CTTACAA
184 GAGATG--TAAAGTGCTGCA-AATTGAAG-TGCTTA-AA
* * *
62351475 TGCTGTAAATTGAAGT-TTATGTGCTTGCAAATTGAAGTGCTGATGCTATAAGTGAGCTGTTAAA
1 TGCTGTAAATTGAAGTGTTAAGTGC-TGCAAATTGAAGTG-TGATGCTATAAATGAG-TGTTTAA
*
62351539 ATGCTGTAAAATTGATTGCTTA-GTTG-AAATTGAGTGTTTATTAGTACTGCAAATCAAGTGTTA
63 ATGCTGT-AAATTGATTGCTTATGTTGCAAATTGAGTGTTTA-TAGTACTGCAAATAAAGTGTTA
62351602 GTTGCTGGACATTGAGATGTTTT
126 GTTGCTGGACATTGAGATGTTTT
62351625 ATATTAAGTA
Statistics
Matches: 691, Mismatches: 50, Indels: 142
0.78 0.06 0.16
Matches are distributed among these distances:
208 13 0.02
209 32 0.05
210 22 0.03
211 10 0.01
212 18 0.03
213 4 0.01
214 8 0.01
215 18 0.03
216 26 0.04
217 48 0.07
218 77 0.11
219 38 0.05
220 5 0.01
221 26 0.04
222 20 0.03
223 39 0.06
224 64 0.09
225 68 0.10
226 21 0.03
227 24 0.03
228 54 0.08
229 24 0.03
230 30 0.04
231 2 0.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.37
Consensus pattern (217 bp):
TGCTGTAAATTGAAGTGTTAAGTGCTGCAAATTGAAGTGTGATGCTATAAATGAGTGTTTAAATG
CTGTAAATTGATTGCTTATGTTGCAAATTGAGTGTTTATAGTACTGCAAATAAAGTGTTAGTTGC
TGGACATTGAGATGTTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTAATTGAGATGTAAAGT
GCTGCAAATTGAAGTGCTTAAA
Found at i:62351641 original size:224 final size:215
Alignment explanation
Indices: 62350590--62351652 Score: 811
Period size: 225 Copynumber: 4.8 Consensus size: 215
62350580 GATGTAAAAG
* ** *
62350590 TGCTGTAAATTGAAGTGTTAAAGT--TGCAAATTGAAGTGTTGAAAGCTGCCAATTGAAGTGTTT
1 TGCTGTAAATTGAAGTGTT-AAGTGCTGCAAATTGAAGTG-TG-ATGCT-ATAAATG-AGTGTTT
* *
62350653 AAATGCTTGTAAATTGAATGCTTTAAATGTTGCAAATTGAAGTG-TTAT-G-ACTGCAAATTAAG
61 AAATGC-TGTAAATTGATTGC-TT--ATGTTGCAAATTG-AGTGTTTATAGTACTGCAAATAAAG
* ** *
62350715 -GTTTTGTTGCTGGACATTGAGAT-TTTTATCGCTGTAATTGAGGTGTTATAAATGTTGTTAAAT
121 TG-TTAGTTGCTGGACATTGAGATGTTTTAT-ATTGTAATTGA-GTGTTATAAATGTTG-TAATT
62350778 GAAGATGTAAAGT-CTGCAAATTGAAAGTGCTT-AA
182 G-AGATGTAAAGTGCTGCAAATTG-AAGTGCTTAAA
* ** *
62350812 TGCGTGTAAATTGAAGTGTTAAG-GCTGCAAACTTGAAGTGTTTGAATGGTGCCAATTGAAGTGT
1 TGC-TGTAAATTGAAGTGTTAAGTGCTGCAAA-TTGAAGTG--TG-ATGCT-ATAAATG-AGTGT
* *
62350876 TTAAATGCTGTAAATTGAAGTGCTTTAAATGTTGCAAATCTGAGTG-TTA-AG-ACCTGAAAATT
59 TTAAATGCTGTAAATTG-ATTGC-TT--ATGTTGCAAAT-TGAGTGTTTATAGTA-CTGCAAA-T
** * * *
62350938 GTAGTGTTTAGTTGCTGGACATGGA-ATTGTTTT-TATCG---CTGA----T-TAAATGTTGTTA
117 AAAGTG-TTAGTTGCTGGACATTGAGA-TGTTTTATATTGTAATTGAGTGTTATAAATGTTG-TA
* *
62350993 ATTGAGATGTAAAGTGCTGCAAATTGAAGTGCCGTAAG
179 ATTGAGATGTAAAGTGCTGCAAATTGAAGTG-CTTAAA
* *
62351031 TGCTGTAAATTGAAGTGTTAAAGTG-TGCAAATT-AAGTG-AATGCTATAAATTAGTGCTTTAAA
1 TGCTGTAAATTGAAGTGTT-AAGTGCTGCAAATTGAAGTGTGATGCTATAAATGAGTG-TTTAAA
* *
62351093 TGCTGTAAA-TGATGTGCTTAAATGTTGTAAATT-AGTGTTTA-AGCTACTGCAAATGAAGTGTT
64 TGCTGTAAATTGAT-TGCTT--ATGTTGCAAATTGAGTGTTTATAG-TACTGCAAATAAAGTG-T
**
62351155 TAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAG-GTGTATAAA-GTTGTAATTGAGAT
124 TAGTTGCTGGACATTGAGATGTTTTAT-ATTGTAATTGAGTGT-TATAAATGTTGTAATTGAGAT
*
62351218 GTAAAATGTCTGCAAATTGAA-TGCTTAAA
187 GTAAAGTG-CTGCAAATTGAAGTGCTTAAA
* ** *
62351247 TGCTGTAAA-TGAAGTGTTAAGTGCTGCAAATTGAA-TTTGAATGCTGCAAATTGATAGTATTTA
1 TGCTGTAAATTGAAGTGTTAAGTGCTGCAAATTGAAGTGTG-ATGCTATAAA-TG--AGTGTTTA
* * *
62351310 AATGCTG-AAATTGAATGCTAATGTTGCAAATTGAAGTGTTT-TCAACTACTGCTAAAATAATAG
62 AATGCTGTAAATTGATTGCTTATGTTGCAAATTG-AGTGTTTAT--AGTACTGC--AAATAA-AG
* *
62351373 TGTTTGTTGCTGGACATTGAGATGTTTTTATCTGCTGTAATTGAGTGTTATAAATGTTGTAATTG
121 TGTTAGTTGCTGGACATTGAGATG-TTTTATAT--TGTAATTGAGTGTTATAAATGTTGTAATTG
62351438 AGATGTTTAAAGTGCTGCATAATTGAAGCT-CTTACAA
183 AGATG--TAAAGTGCTGCA-AATTGAAG-TGCTTA-AA
* * *
62351475 TGCTGTAAATTGAAGT-TTATGTGCTTGCAAATTGAAGTGCTGATGCTATAAGTGAGCTGTTAAA
1 TGCTGTAAATTGAAGTGTTAAGTGC-TGCAAATTGAAGTG-TGATGCTATAAATGAG-TGTTTAA
*
62351539 ATGCTGTAAAATTGATTGCTTA-GTTG-AAATTGAGTGTTTATTAGTACTGCAAATCAAGTGTTA
63 ATGCTGT-AAATTGATTGCTTATGTTGCAAATTGAGTGTTTA-TAGTACTGCAAATAAAGTGTTA
*
62351602 GTTGCTGGACATTGAGATGTTTTATATTAAGTAAATTGAGGTGCTATAAAT
126 GTTGCTGGACATTGAGATGTTTTATATT--GT-AATTGA-GTGTTATAAAT
62351653 ACAAGTTGAT
Statistics
Matches: 704, Mismatches: 62, Indels: 147
0.77 0.07 0.16
Matches are distributed among these distances:
208 4 0.01
209 36 0.05
210 23 0.03
211 11 0.02
212 18 0.03
213 4 0.01
214 8 0.01
215 18 0.03
216 26 0.04
217 48 0.07
218 77 0.11
219 38 0.05
220 5 0.01
221 27 0.04
222 16 0.02
223 47 0.07
224 68 0.10
225 78 0.11
226 21 0.03
227 25 0.04
228 56 0.08
229 28 0.04
230 20 0.03
231 2 0.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (215 bp):
TGCTGTAAATTGAAGTGTTAAGTGCTGCAAATTGAAGTGTGATGCTATAAATGAGTGTTTAAATG
CTGTAAATTGATTGCTTATGTTGCAAATTGAGTGTTTATAGTACTGCAAATAAAGTGTTAGTTGC
TGGACATTGAGATGTTTTATATTGTAATTGAGTGTTATAAATGTTGTAATTGAGATGTAAAGTGC
TGCAAATTGAAGTGCTTAAA
Found at i:62351722 original size:23 final size:22
Alignment explanation
Indices: 62351691--62351751 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 22
62351681 GTGCTGTTAA
*
62351691 ACAATTTGAAGTGTTAAAGTGCT
1 ACAAATTGAAGTGTTAAA-TGCT
*
62351714 ACAAATTGAAGTGTTTGAATGCT
1 ACAAATTGAAGTG-TTAAATGCT
* *
62351737 GCCAATTGAAGTGTT
1 ACAAATTGAAGTGTT
62351752 TATGCTGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 2 0.06
23 27 0.82
24 4 0.12
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (22 bp):
ACAAATTGAAGTGTTAAATGCT
Found at i:62351936 original size:22 final size:23
Alignment explanation
Indices: 62351875--62351942 Score: 86
Period size: 22 Copynumber: 3.0 Consensus size: 23
62351865 AATTGAGATG
62351875 TTAAAGTGCTGCAAATTGAAGCTC
1 TTAAAGTGCTGCAAATTGAAG-TC
* *
62351899 TTAAA-TGCCTGTAAATAGAAGT-
1 TTAAAGTG-CTGCAAATTGAAGTC
62351921 TTAAAGTGCTGCAAATTGAAGT
1 TTAAAGTGCTGCAAATTGAAGT
62351943 GTCTTGAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
22 17 0.45
23 5 0.13
24 16 0.42
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.31
Consensus pattern (23 bp):
TTAAAGTGCTGCAAATTGAAGTC
Done.