Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 20 of 325
Found at i:7698656 original size:7 final size:7
Alignment explanation
Indices: 7698655--7698716 Score: 88
Period size: 7 Copynumber: 8.6 Consensus size: 7
7698645 TTTTTAAGTT
*
7698655 TTTTAAT
1 TTTTAAA
*
7698662 TTTTAAT
1 TTTTAAA
7698669 TTTTAAA
1 TTTTAAA
7698676 TTTTAAA
1 TTTTAAA
7698683 TTTTAAA
1 TTTTAAA
7698690 TTTTAAA
1 TTTTAAA
7698697 TTTTTAAA
1 -TTTTAAA
7698705 TTTTTAAA
1 -TTTTAAA
7698713 TTTT
1 TTTT
7698717 TATTTTTTGA
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
7 38 0.72
8 15 0.28
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (7 bp):
TTTTAAA
Found at i:7698664 original size:8 final size:7
Alignment explanation
Indices: 7698641--7698723 Score: 87
Period size: 7 Copynumber: 11.3 Consensus size: 7
7698631 GACTAAAATA
7698641 TTAATTT
1 TTAATTT
7698648 TTAAGTTTT
1 TTAA--TTT
7698657 TTAATTT
1 TTAATTT
7698664 TTAATTT
1 TTAATTT
7698671 TTAAATTT
1 TT-AATTT
*
7698679 TAAATTT
1 TTAATTT
*
7698686 TAAATTT
1 TTAATTT
*
7698693 TAAATTT
1 TTAATTT
7698700 TTAAATTT
1 TT-AATTT
7698708 TTAAATTT
1 TT-AATTT
7698716 TT-ATTT
1 TTAATTT
7698722 TT
1 TT
7698724 TGAGTTTATT
Statistics
Matches: 70, Mismatches: 2, Indels: 9
0.86 0.02 0.11
Matches are distributed among these distances:
6 6 0.09
7 36 0.51
8 21 0.30
9 7 0.10
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (7 bp):
TTAATTT
Found at i:7698707 original size:37 final size:37
Alignment explanation
Indices: 7698636--7698716 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
7698626 ATATGGACTA
* * * *
7698636 AAATATTAATTTTTAAGTTTTTTAATTTTTAATTTTT
1 AAATTTTAAATTTTAAGATTTTAAATTTTTAATTTTT
7698673 AAATTTTAAATTTTAA-ATTTTAAATTTTTAAATTTTT
1 AAATTTTAAATTTTAAGATTTTAAATTTTT-AATTTTT
7698710 AAATTTT
1 AAATTTT
7698717 TATTTTTTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 11 0.28
37 28 0.72
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (37 bp):
AAATTTTAAATTTTAAGATTTTAAATTTTTAATTTTT
Found at i:7699334 original size:7 final size:7
Alignment explanation
Indices: 7699322--7699385 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
7699312 CCCATGGCCA
7699322 TTAAACC
1 TTAAACC
7699329 TTAAACC
1 TTAAACC
*
7699336 ATAAAACC
1 -TTAAACC
*
7699344 CTAAACC
1 TTAAACC
* *
7699351 ATAGACC
1 TTAAACC
7699358 TTAAACC
1 TTAAACC
**
7699365 TTAAATA
1 TTAAACC
7699372 TTAAACC
1 TTAAACC
*
7699379 GTAAACC
1 TTAAACC
7699386 AAAAAATAAA
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
7 38 0.86
8 6 0.14
ACGTcount: A:0.47, C:0.27, G:0.03, T:0.23
Consensus pattern (7 bp):
TTAAACC
Found at i:7699342 original size:15 final size:15
Alignment explanation
Indices: 7699319--7699369 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
7699309 ATACCCATGG
*
7699319 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
7699334 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
*
7699349 CCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
7699363 CCTTAAA
1 CCATAAA
7699370 TATTAAACCG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 11 0.38
15 18 0.62
ACGTcount: A:0.47, C:0.29, G:0.02, T:0.22
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:7699788 original size:81 final size:81
Alignment explanation
Indices: 7699608--7699819 Score: 264
Period size: 82 Copynumber: 2.6 Consensus size: 81
7699598 GGGGTTATAT
* * ** **
7699608 GACTTTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTCTAACTTTTAGCGGCGTTTTACCGAA
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCT-GTTTTTAGCGGCGTTTTACAAAA
7699673 AGCGCCGCTATTGCTCC
65 AGCGCCGCTATTGCTCC
*
7699690 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGTTTTTAGTGGCGTTTTAACAAAA
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGTTTTTAGCGGCGTTTT-ACAAAA
7699755 AGCGCCGCTATTGCT-C
65 AGCGCCGCTATTGCTCC
* * * * ** *
7699771 TATTTTTAGTGGCGTTTTACCAAAAACGCTTCTATTGATCTGTGTTTTA
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGT-TTTTA
7699820 CAATTTTTGT
Statistics
Matches: 114, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
81 51 0.45
82 63 0.55
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (81 bp):
GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGTTTTTAGCGGCGTTTTACAAAAA
GCGCCGCTATTGCTCC
Found at i:7699796 original size:41 final size:40
Alignment explanation
Indices: 7699609--7699795 Score: 257
Period size: 41 Copynumber: 4.6 Consensus size: 40
7699599 GGGTTATATG
* *
7699609 ACTTTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTCT
1 ACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCT
* *
7699649 AACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTATTGCTCCG
1 -ACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCT-CT
7699691 ACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCT
1 ACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCT
** * *
7699731 GTTTTTAGTGGCGTTTTAACAAAAAGCGCCGCTATTGCTCT
1 ACTTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTATTGCTCT
* *
7699772 ATTTTTAGTGGCGTTTTACCAAAA
1 ACTTTTAGCGGCGTTTTACCAAAA
7699796 ACGCTTCTAT
Statistics
Matches: 132, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
40 21 0.16
41 110 0.83
42 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.34
Consensus pattern (40 bp):
ACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCT
Found at i:7699819 original size:41 final size:40
Alignment explanation
Indices: 7699611--7699819 Score: 229
Period size: 41 Copynumber: 5.1 Consensus size: 40
7699601 GTTATATGAC
* * * **
7699611 TTTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCTCTAAC
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCT-GT
* * * *
7699652 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTATTGCTCCGAC
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTG-T
*
7699693 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
* * *
7699733 TTTTAGTGGCGTTTTAACAAAAAGCGCCGCTATTGCTCTAT
1 TTTTAGCGGCGTTTTACCAAAAA-CGCCGCTATTGCTCTGT
* ** *
7699774 TTTTAGTGGCGTTTTACCAAAAACGCTTCTATTGATCTGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
7699814 GTTTTA
1 -TTTTA
7699820 CAATTTTTGT
Statistics
Matches: 148, Mismatches: 17, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
40 33 0.22
41 115 0.78
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
Found at i:7710850 original size:15 final size:15
Alignment explanation
Indices: 7710828--7710875 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
7710818 AAGAAACCGA
7710828 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
7710843 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
7710857 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
7710873 ATA
1 ATA
7710876 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:7710860 original size:30 final size:28
Alignment explanation
Indices: 7710819--7710875 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
7710809 AAAGATAACA
*
7710819 AGAAACCGAATAAAGAAATCCAAGATAG
1 AGAAACCGAATAAAGAAACCCAAGATAG
7710847 AGAAATCCAGAATAAAGAAACCCAAGATA
1 AGAAA-CC-GAATAAAGAAACCCAAGATA
7710876 CGATACTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 5 0.19
29 2 0.08
30 19 0.73
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (28 bp):
AGAAACCGAATAAAGAAACCCAAGATAG
Found at i:7713965 original size:93 final size:93
Alignment explanation
Indices: 7713837--7714007 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
7713827 GCCCATAAGT
* *
7713837 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
7713902 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * * *
7713930 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
*
7713995 CGAGTTCGGATGC
66 CGAGCTCGGATGC
7714008 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:7714004 original size:46 final size:46
Alignment explanation
Indices: 7713831--7714004 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
7713821 TAACCCGCCC
* * * *
7713831 ATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCT
* *
7713877 ACAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCT
* * *
7713927 CT---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCT
* *
7713970 ATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
7714005 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 7 0.07
44 1 0.01
46 60 0.57
47 28 0.27
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCT
Found at i:7714023 original size:46 final size:45
Alignment explanation
Indices: 7713880--7714023 Score: 111
Period size: 46 Copynumber: 3.1 Consensus size: 45
7713870 CGCATCCACA
*
7713880 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* * *
7713929 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCTAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATC-CT
*
7713972 AAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
7714019 AGTGA
1 AGTGA
7714024 CATGTCACTT
Statistics
Matches: 78, Mismatches: 8, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
41 1 0.01
43 7 0.09
44 1 0.01
46 33 0.42
47 29 0.37
48 4 0.05
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:7724310 original size:39 final size:39
Alignment explanation
Indices: 7724234--7724380 Score: 186
Period size: 39 Copynumber: 3.8 Consensus size: 39
7724224 AAACAATCAA
* * * *
7724234 TAACAATCAGTTATTTAGTACAGTAATTTAGTCATTCAG
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
* * * * *
7724273 TAAGTATCAAATATTCAGTGCAGTAGTTTAGTTATTCAA
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
* *
7724312 TAACTATCAATTATTTAATACAGTAATTTAGTTATTCAG
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
*
7724351 TAACTATCAATTATTCAGTACAGTAGTTTA
1 TAACTATCAATTATTCAGTACAGTAATTTA
7724381 CCCCTATTAA
Statistics
Matches: 89, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (39 bp):
TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
Found at i:7724326 original size:78 final size:78
Alignment explanation
Indices: 7724230--7724380 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
7724220 TATCAAACAA
* * * *
7724230 TCAATAACAATCAGTTATTTAGTACAGTAATTTAGTCATTCAGTAAGTATCAAATATTCAGTGCA
1 TCAATAACAATCAATTATTTAATACAGTAATTTAGTCATTCAGTAACTATCAAATATTCAGTACA
7724295 GTAGTTTAGTTAT
66 GTAGTTTAGTTAT
* * *
7724308 TCAATAACTATCAATTATTTAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
1 TCAATAACAATCAATTATTTAATACAGTAATTTAGTCATTCAGTAACTATCAAATATTCAGTACA
7724373 GTAGTTTA
66 GTAGTTTA
7724381 CCCCTATTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 66 1.00
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (78 bp):
TCAATAACAATCAATTATTTAATACAGTAATTTAGTCATTCAGTAACTATCAAATATTCAGTACA
GTAGTTTAGTTAT
Found at i:7725960 original size:21 final size:23
Alignment explanation
Indices: 7725925--7725968 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
7725915 AATAAATATG
7725925 TTACAATTGTATATATATTATTA
1 TTACAATTGTATATATATTATTA
*
7725948 TTAC-ATT-TATATATTTTATTA
1 TTACAATTGTATATATATTATTA
7725969 CCATACATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 13 0.65
22 3 0.15
23 4 0.20
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (23 bp):
TTACAATTGTATATATATTATTA
Found at i:7735628 original size:16 final size:16
Alignment explanation
Indices: 7735607--7735637 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7735597 GATATTTTAA
7735607 TATATTATATTAATAT
1 TATATTATATTAATAT
*
7735623 TATATTATGTTAATA
1 TATATTATATTAATA
7735638 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:7735734 original size:12 final size:12
Alignment explanation
Indices: 7735717--7735747 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7735707 GAAGCAGGGG
7735717 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
7735729 AGAAAAAGGGAA
1 AGAAAAAGAGAA
7735741 AGAAAAA
1 AGAAAAA
7735748 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:7744252 original size:30 final size:30
Alignment explanation
Indices: 7744211--7744268 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
7744201 TTATTGTTAA
*
7744211 TTTTTTTATTATTTTAAAGACATTTGCTAC
1 TTTTGTTATTATTTTAAAGACATTTGCTAC
*
7744241 TTTTGTTATTATTTTAGAGACATTTGCT
1 TTTTGTTATTATTTTAAAGACATTTGCT
7744269 TGTTAAATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.24, C:0.09, G:0.10, T:0.57
Consensus pattern (30 bp):
TTTTGTTATTATTTTAAAGACATTTGCTAC
Found at i:7744419 original size:12 final size:12
Alignment explanation
Indices: 7744389--7744421 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7744379 TATATATTTT
7744389 AAAATT-ATATA
1 AAAATTAATATA
7744400 AAAA-TAATATA
1 AAAATTAATATA
7744411 AAAATTAATAT
1 AAAATTAATAT
7744422 GGACTTGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:7744756 original size:31 final size:30
Alignment explanation
Indices: 7744695--7744757 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 30
7744685 TCACTTGTTT
**
7744695 ATATATATATACATATATTGTTTATTTTAA
1 ATATATATATACATATATTGTTTAAATTAA
* *
7744725 ATATATTTATACTATATATTTTTTAAATTAA
1 ATATATATATAC-ATATATTGTTTAAATTAA
7744756 AT
1 AT
7744758 TCAACCCAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 11 0.39
31 17 0.61
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (30 bp):
ATATATATATACATATATTGTTTAAATTAA
Found at i:7755043 original size:27 final size:27
Alignment explanation
Indices: 7755012--7755064 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
7755002 TTTGTTGATT
7755012 TTCTTTTCATTTCCCTTTCGTTTTTAA
1 TTCTTTTCATTTCCCTTTCGTTTTTAA
7755039 TTCTTTTCATTTCCCTTTCGTTTTTA
1 TTCTTTTCATTTCCCTTTCGTTTTTA
7755065 CTTTCTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.09, C:0.23, G:0.04, T:0.64
Consensus pattern (27 bp):
TTCTTTTCATTTCCCTTTCGTTTTTAA
Found at i:7767328 original size:24 final size:24
Alignment explanation
Indices: 7767301--7767352 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7767291 TTAGTAAGTC
*
7767301 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7767325 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7767349 AAAT
1 AAAT
7767353 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7770374 original size:24 final size:24
Alignment explanation
Indices: 7770347--7770398 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7770337 TTAGTAAGTC
*
7770347 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7770371 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7770395 AAAT
1 AAAT
7770399 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7773069 original size:34 final size:34
Alignment explanation
Indices: 7773026--7773091 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 34
7773016 AGTAAAATAT
7773026 TTTTCGTAAAATGATTT-CAGGAAAATATTTTAC
1 TTTTCGTAAAATGATTTACAGGAAAATATTTTAC
*
7773059 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTC-GTAAAATGATTTACAGGAAAATATTTT
7773092 CTGCTGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.40
35 13 0.43
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (34 bp):
TTTTCGTAAAATGATTTACAGGAAAATATTTTAC
Found at i:7806418 original size:51 final size:51
Alignment explanation
Indices: 7806362--7806471 Score: 195
Period size: 51 Copynumber: 2.2 Consensus size: 51
7806352 CTGATCACAT
7806362 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAA-AGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGA-CTACCACTTATCAC
7806413 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGACTACCACTTATCAC
*
7806464 TTGTCACT
1 TTATCACT
7806472 GATCAGAAGT
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
51 56 0.98
52 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGACTACCACTTATCAC
Found at i:7808117 original size:21 final size:21
Alignment explanation
Indices: 7808093--7808144 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
7808083 CTTTTTATTC
7808093 AATTAAC-TATCGAAACTTTAA
1 AATTAACTTA-CGAAACTTTAA
*
7808114 AATT-TCTTGACGAAACTTTAA
1 AATTAACTT-ACGAAACTTTAA
*
7808135 TATTAACTTA
1 AATTAACTTA
7808145 TTAACACTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.38
Consensus pattern (21 bp):
AATTAACTTACGAAACTTTAA
Found at i:7808387 original size:31 final size:31
Alignment explanation
Indices: 7808349--7808412 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
7808339 GGATTTAGTG
*
7808349 ATCTCGAATCACTGTTCTGACACTACTGAAA
1 ATCTCGAATCACTGTTCTGACACCACTGAAA
*
7808380 ATCTCGAATTACTGTTCTGACACCACTGAAA
1 ATCTCGAATCACTGTTCTGACACCACTGAAA
7808411 AT
1 AT
7808413 TTAGGCTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (31 bp):
ATCTCGAATCACTGTTCTGACACCACTGAAA
Found at i:7809631 original size:21 final size:22
Alignment explanation
Indices: 7809602--7809645 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7809592 TCCGTTCTTC
*
7809602 TTTTTCTTTGT-TTTATT-TAT
1 TTTTTCTTTATGTTTATTATAT
7809622 TTTTTACTTTATGTTTATTATAT
1 TTTTT-CTTTATGTTTATTATAT
7809645 T
1 T
7809646 AATATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 5 0.25
22 6 0.30
23 4 0.20
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.75
Consensus pattern (22 bp):
TTTTTCTTTATGTTTATTATAT
Found at i:7811322 original size:13 final size:14
Alignment explanation
Indices: 7811299--7811343 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
7811289 AATGTTGAAA
7811299 TTCAACTTGTCATC
1 TTCAACTTGTCATC
7811313 TTCAAC-TGTCA--
1 TTCAACTTGTCATC
7811324 -TCAACTTGTCATC
1 TTCAACTTGTCATC
7811337 TTCAACT
1 TTCAACT
7811344 GTGCTGACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
10 5 0.19
11 5 0.19
13 5 0.19
14 12 0.44
ACGTcount: A:0.24, C:0.29, G:0.07, T:0.40
Consensus pattern (14 bp):
TTCAACTTGTCATC
Found at i:7811327 original size:24 final size:24
Alignment explanation
Indices: 7811300--7811345 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
7811290 ATGTTGAAAT
7811300 TCAACTTGTCATCTTCAACTGTCA
1 TCAACTTGTCATCTTCAACTGTCA
7811324 TCAACTTGTCATCTTCAACTGT
1 TCAACTTGTCATCTTCAACTGT
7811346 GCTGACCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.09, T:0.39
Consensus pattern (24 bp):
TCAACTTGTCATCTTCAACTGTCA
Found at i:7814845 original size:24 final size:24
Alignment explanation
Indices: 7814782--7814846 Score: 82
Period size: 22 Copynumber: 2.8 Consensus size: 24
7814772 TGATGTTGAT
* *
7814782 GATATTTTATGATTA-TTTAATTA
1 GATATTTTATTATTATTTTAATGA
*
7814805 GATA-TATA-TATTATTTTAATGA
1 GATATTTTATTATTATTTTAATGA
7814827 GATATTTTATTATTATTTTA
1 GATATTTTATTATTATTTTA
7814847 TTATTAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 4 0.11
22 14 0.40
23 7 0.20
24 10 0.29
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (24 bp):
GATATTTTATTATTATTTTAATGA
Found at i:7816921 original size:46 final size:46
Alignment explanation
Indices: 7816854--7817174 Score: 426
Period size: 46 Copynumber: 7.0 Consensus size: 46
7816844 AGTGTGCTCT
7816854 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7816900 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
7816946 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7816992 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
7817038 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
7817084 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * * *
7817130 ATGACAAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7817175 TCATGTCAAA
Statistics
Matches: 249, Mismatches: 25, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
46 216 0.87
47 33 0.13
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:7829296 original size:21 final size:21
Alignment explanation
Indices: 7829270--7829310 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7829260 ATCTGCTCAA
* *
7829270 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7829291 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7829311 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7834039 original size:40 final size:41
Alignment explanation
Indices: 7833962--7834049 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 41
7833952 AATTACTTTT
* * *
7833962 TAAATTTTGAATTTAACAAAATAATCCTAATAATTAAA-TA
1 TAAATTTTGAATTTAAAAAAAAAATCATAATAATTAAATTA
*
7834002 TAAATTTTGAAATTTAAAAAAAAAAT-ATAA-AATTTAAATTC
1 TAAATTTTG-AATTTAAAAAAAAAATCATAATAA-TTAAATTA
7834043 TAAATTT
1 TAAATTT
7834050 ATAATGAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
39 2 0.05
40 17 0.41
41 22 0.54
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (41 bp):
TAAATTTTGAATTTAAAAAAAAAATCATAATAATTAAATTA
Found at i:7836327 original size:16 final size:18
Alignment explanation
Indices: 7836300--7836334 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7836290 ATGTAATTTA
7836300 TAAAATTTTATAA-ATAT
1 TAAAATTTTATAATATAT
7836317 TAAAA-TTTATAATATAT
1 TAAAATTTTATAATATAT
7836334 T
1 T
7836335 TTTAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAAATTTTATAATATAT
Found at i:7844316 original size:21 final size:22
Alignment explanation
Indices: 7844290--7844330 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7844280 TTAATAAAAA
7844290 TAATATAATTATTTT-TATTTT
1 TAATATAATTATTTTATATTTT
7844311 TAATATAATTATTTTATATT
1 TAATATAATTATTTTATATT
7844331 AAATTATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TAATATAATTATTTTATATTTT
Found at i:7844338 original size:21 final size:21
Alignment explanation
Indices: 7844291--7844334 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
7844281 TAATAAAAAT
* *
7844291 AATATAATTATTTTTATTTTT
1 AATATAATTATTTTTATATTA
7844312 AATATAATTA-TTTTATATTA
1 AATATAATTATTTTTATATTA
7844332 AAT
1 AAT
7844335 TATATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
AATATAATTATTTTTATATTA
Found at i:7844357 original size:11 final size:10
Alignment explanation
Indices: 7844325--7844358 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7844315 ATAATTATTT
*
7844325 TATATTAAAT
1 TATATTAAAA
7844335 TATATTAAAA
1 TATATTAAAA
7844345 TATGATTAAAA
1 TAT-ATTAAAA
7844356 TAT
1 TAT
7844359 TATTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (10 bp):
TATATTAAAA
Found at i:7847379 original size:6 final size:6
Alignment explanation
Indices: 7847369--7847403 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
7847359 AATTATATTT
* *
7847369 TTTTAT TTTTAT TTTTAG TTTTAG TTTTAG TTTTA
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTA
7847404 AATTTAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (6 bp):
TTTTAG
Found at i:7857954 original size:15 final size:15
Alignment explanation
Indices: 7857928--7857965 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
7857918 AGAGAGCAGG
*
7857928 GGAAAGAAAGAAGGAA
1 GGAAA-AAAGAAAGAA
7857944 GGAAAAAAGAAAGAA
1 GGAAAAAAGAAAGAA
7857959 GGAAAAA
1 GGAAAAA
7857966 GGGAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (15 bp):
GGAAAAAAGAAAGAA
Found at i:7858849 original size:16 final size:16
Alignment explanation
Indices: 7858828--7858861 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7858818 AAATATAGTT
7858828 AATTAATT-AAAATATG
1 AATTAATTGAAAAT-TG
7858844 AATTAATTGAAAATTG
1 AATTAATTGAAAATTG
7858860 AA
1 AA
7858862 AAGTGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATTAATTGAAAATTG
Found at i:7859281 original size:18 final size:18
Alignment explanation
Indices: 7859228--7859295 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
7859218 AAAGATCGAC
*
7859228 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAA-TTGAT
* *
7859247 TGTTACTGTATATTTGAT
1 TGTTACTGAATAATTGAT
* *
7859265 TTTTACTGAATAATTGAC
1 TGTTACTGAATAATTGAT
*
7859283 TGTTACTGGATAA
1 TGTTACTGAATAA
7859296 CCGATCAATT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
18 29 0.73
19 11 0.28
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.47
Consensus pattern (18 bp):
TGTTACTGAATAATTGAT
Found at i:7863718 original size:22 final size:23
Alignment explanation
Indices: 7863691--7863733 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
7863681 AAATTAAAAG
*
7863691 TAATATAAGT-ATTTTAAAATAA
1 TAATATAAGTGAATTTAAAATAA
7863713 TAATATAAGTGAATTTAAAAT
1 TAATATAAGTGAATTTAAAAT
7863734 GGATTTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (23 bp):
TAATATAAGTGAATTTAAAATAA
Found at i:7864646 original size:34 final size:34
Alignment explanation
Indices: 7864603--7864671 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
7864593 TCACACAGAT
*
7864603 CCAAGTTTGTATTTATGGCAACATTTGCATGTCC
1 CCAAGTTTGTACTTATGGCAACATTTGCATGTCC
7864637 CCAAGTTTGTACTTATGGCAACATTTGCATGTCC
1 CCAAGTTTGTACTTATGGCAACATTTGCATGTCC
7864671 C
1 C
7864672 ATGTATCTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (34 bp):
CCAAGTTTGTACTTATGGCAACATTTGCATGTCC
Found at i:7870994 original size:2 final size:2
Alignment explanation
Indices: 7870989--7871014 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7870979 AGCATATATA
7870989 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
7871015 GAAGAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:7893799 original size:17 final size:16
Alignment explanation
Indices: 7893764--7893820 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
7893754 GAATATTTTA
*
7893764 AAAAATTAGAAATTCC
1 AAAAATTATAAATTCC
*
7893780 AAAAATTATAAATGTGC
1 AAAAATTATAAAT-TCC
*
7893797 AAAAATATATATATT--
1 AAAAAT-TATAAATTCC
7893812 AAAAATTAT
1 AAAAATTAT
7893821 TAAAATTTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
14 3 0.08
15 6 0.17
16 12 0.33
17 9 0.25
18 6 0.17
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (16 bp):
AAAAATTATAAATTCC
Found at i:7897958 original size:6 final size:6
Alignment explanation
Indices: 7897944--7897978 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
7897934 TATAAGAAGA
* *
7897944 AAGAAG AAGATG AAGAGG AAGAGG AAGAGG AAGAG
1 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAG
7897979 CAGAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.54, C:0.00, G:0.43, T:0.03
Consensus pattern (6 bp):
AAGAGG
Found at i:7904020 original size:19 final size:19
Alignment explanation
Indices: 7903978--7904020 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7903968 TAATAAAATC
* *
7903978 ATTTT-TAATTATTTATTA
1 ATTTTATAAATATTTAATA
*
7903996 ACTTTATAAATATTTAATA
1 ATTTTATAAATATTTAATA
7904015 ATTTTA
1 ATTTTA
7904021 ATTTCTCATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTTTATAAATATTTAATA
Found at i:7914563 original size:15 final size:16
Alignment explanation
Indices: 7914531--7914570 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
7914521 ATAGTAAAAA
7914531 TATAATTTTATTATTT
1 TATAATTTTATTATTT
7914547 TATAA-TTTA-TATATT
1 TATAATTTTATTAT-TT
7914562 TATAATTTT
1 TATAATTTT
7914571 TTAAGTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 3 0.14
15 11 0.50
16 8 0.36
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATAATTTTATTATTT
Found at i:7922114 original size:14 final size:14
Alignment explanation
Indices: 7922095--7922126 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
7922085 AGGTCATTTA
7922095 GCCCAACCAAACTG
1 GCCCAACCAAACTG
7922109 GCCCAACCAAACTG
1 GCCCAACCAAACTG
7922123 GCCC
1 GCCC
7922127 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:7927229 original size:14 final size:14
Alignment explanation
Indices: 7927210--7927241 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7927200 AGGTCATTTA
7927210 GCCCAACCAAACTG
1 GCCCAACCAAACTG
*
7927224 GCCCAACCAAATTG
1 GCCCAACCAAACTG
7927238 GCCC
1 GCCC
7927242 GGTGATTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.44, G:0.16, T:0.09
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:7974111 original size:16 final size:15
Alignment explanation
Indices: 7974079--7974109 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7974069 ATAATCTCAT
*
7974079 ATTTTTATTGTTAAA
1 ATTTTTATTATTAAA
7974094 ATTTTTATTATTAAA
1 ATTTTTATTATTAAA
7974109 A
1 A
7974110 ATGAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
ATTTTTATTATTAAA
Found at i:7975591 original size:23 final size:23
Alignment explanation
Indices: 7975565--7975609 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7975555 TGTCACGATG
* *
7975565 AGGAGATATGTGATGTTGCGACA
1 AGGAGATATGTGACGTCGCGACA
7975588 AGGAGATATGTGACGTCGCGAC
1 AGGAGATATGTGACGTCGCGAC
7975610 GATATCTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.29, C:0.13, G:0.36, T:0.22
Consensus pattern (23 bp):
AGGAGATATGTGACGTCGCGACA
Found at i:7976733 original size:4 final size:4
Alignment explanation
Indices: 7976724--7976752 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7976714 AGCAAACGTG
7976724 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
7976753 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:7977580 original size:47 final size:47
Alignment explanation
Indices: 7977516--7977626 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
7977506 GACATTGAGT
* * *
7977516 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTT
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTATTC
* * *
7977563 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
7977610 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
7977627 CTTATCCCGG
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
47 50 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
Found at i:7984965 original size:21 final size:21
Alignment explanation
Indices: 7984939--7985004 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
7984929 ATGATAAGTC
*
7984939 TCTGTTTAGCTCTTACGAGCT
1 TCTGTTCAGCTCTTACGAGCT
* * *
7984960 TCTGTTCAACTCTTATGAGTT
1 TCTGTTCAGCTCTTACGAGCT
7984981 TCTGTTCAGCTCTTACGAGCT
1 TCTGTTCAGCTCTTACGAGCT
7985002 TCT
1 TCT
7985005 TTTGGCTCAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.15, C:0.24, G:0.17, T:0.44
Consensus pattern (21 bp):
TCTGTTCAGCTCTTACGAGCT
Found at i:7986812 original size:3 final size:3
Alignment explanation
Indices: 7986804--7986832 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7986794 TGTAATATAT
7986804 ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7986833 CATTTAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7988903 original size:52 final size:48
Alignment explanation
Indices: 7988824--7989030 Score: 179
Period size: 47 Copynumber: 4.2 Consensus size: 48
7988814 CCATGGTAGC
* * * * *
7988824 ATGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAG
1 ATGTGATATGTG-CTTCCGTATAAGACCATATCTGGGATATGGCATC-G-G
*
7988875 AAATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
1 --ATGTGATATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCGG
* * *
7988925 -TGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCAG
1 ATGTGATATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCGG
* * * * * *
7988972 -TGTGATATATG-ATCCGTGTAAGACCATGA-CTGGGCTATGACCTCGG
1 ATGTGATATGTGCTTCCGTATAAGACCAT-ATCTGGGATATGGCATCGG
*
7989018 TATGTGATTTGTG
1 -ATGTGATATGTG
7989031 ACTATGTGCA
Statistics
Matches: 130, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
46 25 0.19
47 54 0.42
48 9 0.07
50 1 0.01
51 1 0.01
52 29 0.22
53 11 0.08
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGTGATATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCGG
Found at i:7999526 original size:26 final size:26
Alignment explanation
Indices: 7999467--7999526 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 26
7999457 AAACTAATTA
7999467 ATTAAAAATATTTAATACGATATCATT
1 ATTAAAAATATTTAATAC-ATATCATT
**
7999494 AGAAAAAATATTTAATTA-ATAT-ATTT
1 ATTAAAAATATTTAA-TACATATCA-TT
7999520 ATTAAAA
1 ATTAAAA
7999527 TTTTGGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
25 1 0.04
26 11 0.41
27 13 0.48
28 2 0.07
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (26 bp):
ATTAAAAATATTTAATACATATCATT
Found at i:8004746 original size:26 final size:26
Alignment explanation
Indices: 8004707--8004759 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8004697 TCTTTACTCG
* *
8004707 CTCCTATATTGATCGATAGATACATA
1 CTCCTATATCGATCAATAGATACATA
8004733 CTCCTATATCGATCAATAGATACATA
1 CTCCTATATCGATCAATAGATACATA
8004759 C
1 C
8004760 ATACTTAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (26 bp):
CTCCTATATCGATCAATAGATACATA
Found at i:8006189 original size:43 final size:43
Alignment explanation
Indices: 8006141--8006243 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
8006131 CCGGCATTAC
8006141 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
8006184 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
8006227 GCCTGCTAGGCACGAAG
1 GCCTGCTAGGCACGAAG
8006244 CCTGCTAGGC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.29, C:0.34, G:0.27, T:0.10
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:8006240 original size:16 final size:16
Alignment explanation
Indices: 8006219--8006259 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
8006209 ACACATCACC
8006219 GGCACGAAGCCTGCTA
1 GGCACGAAGCCTGCTA
8006235 GGCACGAAGCCTGCTA
1 GGCACGAAGCCTGCTA
8006251 GGCACGAAG
1 GGCACGAAG
8006260 GCCCGAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.34, T:0.10
Consensus pattern (16 bp):
GGCACGAAGCCTGCTA
Found at i:8006268 original size:59 final size:59
Alignment explanation
Indices: 8006176--8006291 Score: 214
Period size: 59 Copynumber: 2.0 Consensus size: 59
8006166 ACACATCACC
8006176 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
* *
8006235 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATATACATTACCGGCACGAAGCCTGC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGC
8006292 GGGATTTAAC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.28, C:0.33, G:0.28, T:0.11
Consensus pattern (59 bp):
GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
Found at i:8006324 original size:38 final size:40
Alignment explanation
Indices: 8006273--8006348 Score: 120
Period size: 38 Copynumber: 1.9 Consensus size: 40
8006263 CGAATATACA
*
8006273 TTACCGGCACGAAGCCTGCGGG-ATTTAA-CCCGGATATT
1 TTACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATATT
*
8006311 TTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
1 TTACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATA
8006349 CACATCAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 21 0.62
39 5 0.15
40 8 0.24
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (40 bp):
TTACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATATT
Found at i:8017213 original size:26 final size:26
Alignment explanation
Indices: 8017183--8017234 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8017173 TATCTTTACT
8017183 CACTATAGTTATACTATTTATCTATA
1 CACTATAGTTATACTATTTATCTATA
8017209 CACTATAGTTATACTATTTATCTATA
1 CACTATAGTTATACTATTTATCTATA
8017235 GATGTATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.46
Consensus pattern (26 bp):
CACTATAGTTATACTATTTATCTATA
Found at i:8023967 original size:20 final size:20
Alignment explanation
Indices: 8023930--8023968 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8023920 CTCCTTCTAA
* *
8023930 ATTTTTAAATTTTATTTTAT
1 ATTTTCAAATTATATTTTAT
*
8023950 ATTTTCAAATTATCTTTTA
1 ATTTTCAAATTATATTTTA
8023969 ACGAAATTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTCAAATTATATTTTAT
Found at i:8025786 original size:21 final size:21
Alignment explanation
Indices: 8025760--8025801 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
8025750 AAATTAGTTG
8025760 TTTTGC-TCTATTTTGTTATTA
1 TTTTGCATC-ATTTTGTTATTA
8025781 TTTTGCAATCATTTTGTTATT
1 TTTTGC-ATCATTTTGTTATT
8025802 GTTTAACTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 11 0.58
23 2 0.11
ACGTcount: A:0.17, C:0.10, G:0.10, T:0.64
Consensus pattern (21 bp):
TTTTGCATCATTTTGTTATTA
Found at i:8028881 original size:21 final size:21
Alignment explanation
Indices: 8028855--8028896 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
8028845 TTTTGGTCAC
8028855 TAAAAAAATTATCTTTTTAAAG
1 TAAAAAAATTAT-TTTTTAAAG
8028877 TAAAAAAATTATTTTTTAAA
1 TAAAAAAATTATTTTTTAAA
8028897 TATTGATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
TAAAAAAATTATTTTTTAAAG
Found at i:8035294 original size:16 final size:17
Alignment explanation
Indices: 8035275--8035306 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8035265 AGGGGATCTC
8035275 AACAGTACC-GAGCTCT
1 AACAGTACCTGAGCTCT
8035291 AACAGTACCTGAGCTC
1 AACAGTACCTGAGCTC
8035307 ACCCAGCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (17 bp):
AACAGTACCTGAGCTCT
Found at i:8036577 original size:21 final size:23
Alignment explanation
Indices: 8036537--8036579 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
8036527 CTAGACTAAA
8036537 CCTAAAAAATGAGTTTAAAATTAT
1 CCTAAAAAAT-AGTTTAAAATTAT
8036561 CCTAAAAAAT-G-TTAAAATT
1 CCTAAAAAATAGTTTAAAATT
8036580 CATTCAGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 1 0.05
24 10 0.53
ACGTcount: A:0.51, C:0.09, G:0.07, T:0.33
Consensus pattern (23 bp):
CCTAAAAAATAGTTTAAAATTAT
Found at i:8046140 original size:23 final size:23
Alignment explanation
Indices: 8046110--8046157 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
8046100 ATCTATACTC
8046110 AATTCTTTAATCGAATTTGAAAT
1 AATTCTTTAATCGAATTTGAAAT
*
8046133 AATTCTTTGATCGAATTTGAAAT
1 AATTCTTTAATCGAATTTGAAAT
8046156 AA
1 AA
8046158 ATAAGAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (23 bp):
AATTCTTTAATCGAATTTGAAAT
Found at i:8053123 original size:21 final size:23
Alignment explanation
Indices: 8053098--8053143 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
8053088 TTTCAGACTA
*
8053098 TACATGTATTA-AAATTTA-TAT
1 TACATGAATTATAAATTTATTAT
*
8053119 TACATGAATTATTAATTTATTAT
1 TACATGAATTATAAATTTATTAT
8053142 TA
1 TA
8053144 TTTAAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 6 0.29
23 5 0.24
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (23 bp):
TACATGAATTATAAATTTATTAT
Found at i:8056885 original size:21 final size:21
Alignment explanation
Indices: 8056842--8056885 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8056832 ATTAAAATAA
*
8056842 TAAAATAATATTTAATTAACT
1 TAAAATAATATTTAATCAACT
*
8056863 TAAAATAAT-TTTACTCAATCT
1 TAAAATAATATTTAATCAA-CT
8056884 TA
1 TA
8056886 TATAAAAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAAATAATATTTAATCAACT
Found at i:8061384 original size:210 final size:206
Alignment explanation
Indices: 8061026--8061496 Score: 746
Period size: 210 Copynumber: 2.3 Consensus size: 206
8061016 AGTTTTTAAA
* * *
8061026 AATATTTTAATTTAATTTTAATAATGCATACTTTATTCGGATGAAGTATGTATTAGCAGATTCAG
1 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTAGCAGATTCAC
*
8061091 TAATATGATTATATATATTTACGCATGTATCACATTACAAAAACAAAATTTTAAATATTTATACC
66 TAATATGATTATATATATTTACGCATGTATCACATTACAAAAACAAAATTTTAAATACTTATACC
** * *
8061156 TAATAAAACATCTATCTCATTACAATAATTGTTA-TTTCTCAAATAACATATTATTTTTTAGTTT
131 TAATAAAACATCTATCTCATTACAATAATAATTATTTTC-CAAATAACATATTATTTTATAATTT
8061220 TATTTCTTATTT
195 TATTTCTTATTT
** *
8061232 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGAAAAAGTACGCATTAGCAGATTCAC
1 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTAGCAGATTCAC
*
8061297 TAATATGATTATATATATATATTTACGCATGTATCACATTACAAAAACAAAATTTTAAATGCTTA
66 TAATATG---AT-TATATATATTTACGCATGTATCACATTACAAAAACAAAATTTTAAATACTTA
* *
8061362 TACCTAATAAAACATGTATCTCATTACAATAATAATTATTTTCCAAATAACATATTGTTTTATAA
127 TACCTAATAAAACATCTATCTCATTACAATAATAATTATTTTCCAAATAACATATTATTTTATAA
*
8061427 TTTTATTTCTTGTTT
192 TTTTATTTCTTATTT
*
8061442 AATATTTTCATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTA
1 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTA
8061497 TTAAAATTAA
Statistics
Matches: 241, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
206 66 0.27
209 2 0.01
210 169 0.70
211 4 0.02
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.43
Consensus pattern (206 bp):
AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTAGCAGATTCAC
TAATATGATTATATATATTTACGCATGTATCACATTACAAAAACAAAATTTTAAATACTTATACC
TAATAAAACATCTATCTCATTACAATAATAATTATTTTCCAAATAACATATTATTTTATAATTTT
ATTTCTTATTT
Found at i:8061448 original size:19 final size:21
Alignment explanation
Indices: 8061416--8061454 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8061406 AAATAACATA
*
8061416 TTGTTTTATAATTTT-ATTTC
1 TTGTTTAATAATTTTCATTTC
8061436 TTGTTTAAT-ATTTTCATTT
1 TTGTTTAATAATTTTCATTT
8061455 AATTTTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (21 bp):
TTGTTTAATAATTTTCATTTC
Found at i:8070280 original size:53 final size:53
Alignment explanation
Indices: 8070199--8070349 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
8070189 CTTACAGGGT
* *
8070199 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
8070254 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
8070307 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
8070350 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:8075139 original size:123 final size:125
Alignment explanation
Indices: 8074952--8075192 Score: 369
Period size: 123 Copynumber: 1.9 Consensus size: 125
8074942 AAAAAAATAC
*
8074952 TCATTTCTAATCTTATTTATAAAAATGGGCCACTTAACTTTATTTATCAGAATGGGTCAAAAAAT
1 TCATTTCTAATCTTATTTATAAAAATGGGCCACTTAACTTTATTTATCAAAATGGGTCAAAAAAT
*
8075017 CCAAAACGTGCCTACGTAAAATCGTTTTAAGGAGAAATTTCAT-AAAAACGTGCTCAAGT
66 CCAAAACGTGCCTACGTAAAATCGTTTTAAGAAGAAATTTCATAAAAAACGTGCTCAAGT
* * * * *
8075076 TCATTTCTAATTTTATTTA-CAGAATGGGCCGCTTAACTTTATTTGTCAAAATGGGTCAAAAAAT
1 TCATTTCTAATCTTATTTATAAAAATGGGCCACTTAACTTTATTTATCAAAATGGGTCAAAAAAT
** * *
8075140 TTAAAACGTGCTTACGTGAAATCGTTTTAAGAAGAAATTTCATAAAAAACGTG
66 CCAAAACGTGCCTACGTAAAATCGTTTTAAGAAGAAATTTCATAAAAAACGTG
8075193 TTGACGAGAA
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
123 78 0.74
124 27 0.26
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (125 bp):
TCATTTCTAATCTTATTTATAAAAATGGGCCACTTAACTTTATTTATCAAAATGGGTCAAAAAAT
CCAAAACGTGCCTACGTAAAATCGTTTTAAGAAGAAATTTCATAAAAAACGTGCTCAAGT
Found at i:8084733 original size:14 final size:15
Alignment explanation
Indices: 8084714--8084742 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8084704 AAGAATTCCC
8084714 TTCTTTTTCT-TTTT
1 TTCTTTTTCTCTTTT
8084728 TTCTTTTTCTCTTTT
1 TTCTTTTTCTCTTTT
8084743 AAAATCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTCTTTTTCTCTTTT
Found at i:8093008 original size:35 final size:35
Alignment explanation
Indices: 8092969--8093040 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
8092959 AATATCGTTA
8092969 GTTTGTACTGATATGATACTATTAACCAATATGTG
1 GTTTGTACTGATATGATACTATTAACCAATATGTG
8093004 GTTTGTACTGATATGATACTATTAACCAATATGTG
1 GTTTGTACTGATATGATACTATTAACCAATATGTG
8093039 GT
1 GT
8093041 GTCGCATGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (35 bp):
GTTTGTACTGATATGATACTATTAACCAATATGTG
Found at i:8093288 original size:27 final size:30
Alignment explanation
Indices: 8093257--8093313 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
8093247 TGTGTAATTG
*
8093257 TATACAC-GAAA-TTT-ATTTTGGTTCAAT
1 TATACACAGAAACTTTAATTCTGGTTCAAT
8093284 TATACACATGAAACTTTAATTCTGGTTCAA
1 TATACACA-GAAACTTTAATTCTGGTTCAA
8093314 ATGTATACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 7 0.28
29 4 0.16
30 3 0.12
31 11 0.44
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (30 bp):
TATACACAGAAACTTTAATTCTGGTTCAAT
Found at i:8097019 original size:19 final size:19
Alignment explanation
Indices: 8096995--8097037 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
8096985 TAAAAATTTA
*
8096995 AAAAATTAAAACATAGT-TT
1 AAAAATTAAAA-ATAATGTT
8097014 AAAAA-TAAAAATAATGTT
1 AAAAATTAAAAATAATGTT
8097032 AAAAAT
1 AAAAAT
8097038 GTTTTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 12 0.57
19 5 0.24
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (19 bp):
AAAAATTAAAAATAATGTT
Found at i:8097897 original size:20 final size:22
Alignment explanation
Indices: 8097874--8097920 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
8097864 GAAAATTTTA
*
8097874 ATTATAA-TTAAATAATA-AAT
1 ATTATAATTTAAAAAATATAAT
*
8097894 ATTA-AATTTAAAAAATATATT
1 ATTATAATTTAAAAAATATAAT
8097915 ATTATA
1 ATTATA
8097921 CAGGGAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 13 0.59
21 6 0.27
22 1 0.05
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTATAATTTAAAAAATATAAT
Found at i:8100590 original size:37 final size:37
Alignment explanation
Indices: 8100540--8100615 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
8100530 ACTAAGAGAG
*
8100540 GATGCTGTTCTACTTAGAAAGGTAATAGGTTACATTT
1 GATGCTGTTCTACTTAAAAAGGTAATAGGTTACATTT
*
8100577 GATGCTGTTCTACTTAAAAAGGTGATAGGTTACATTT
1 GATGCTGTTCTACTTAAAAAGGTAATAGGTTACATTT
8100614 GA
1 GA
8100616 GAAGGTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (37 bp):
GATGCTGTTCTACTTAAAAAGGTAATAGGTTACATTT
Found at i:8106490 original size:18 final size:17
Alignment explanation
Indices: 8106467--8106500 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
8106457 AAAAAATTGT
8106467 AATAATTATATATTTAAA
1 AATAATTATA-ATTTAAA
8106485 AATAATTATAATTTAA
1 AATAATTATAATTTAA
8106501 TAGAACTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAATTATAATTTAAA
Found at i:8109426 original size:60 final size:60
Alignment explanation
Indices: 8109318--8109488 Score: 177
Period size: 60 Copynumber: 2.8 Consensus size: 60
8109308 CCATTGAAAG
* * * *
8109318 TCATCCACCACCAATGCAATACTCGCCACCCGCTCAAGGTC-GCACACCACCTACACAA-GC
1 TCAT-CACCACCAACGCAATACTCGCCACCCACTCAAGCTCATC-CACCACCTACACAAGGC
* * * *
8109378 TCATTCACCACCAACGCAATACCCGCCCCCCACTCAAGCTCATCCACCACCTACTCAAGGT
1 TCA-TCACCACCAACGCAATACTCGCCACCCACTCAAGCTCATCCACCACCTACACAAGGC
* * * *
8109439 TGCA-CACCACCAACACAATTCTCTCCACCCACTCAAGCTCATCCTCCACC
1 T-CATCACCACCAACGCAATACTCGCCACCCACTCAAGCTCATCCACCACC
8109489 AAGACAATAC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
60 87 0.94
61 4 0.04
62 2 0.02
ACGTcount: A:0.29, C:0.47, G:0.08, T:0.16
Consensus pattern (60 bp):
TCATCACCACCAACGCAATACTCGCCACCCACTCAAGCTCATCCACCACCTACACAAGGC
Found at i:8109488 original size:39 final size:39
Alignment explanation
Indices: 8109443--8109677 Score: 223
Period size: 39 Copynumber: 6.2 Consensus size: 39
8109433 CAAGGTTGCA
** * *
8109443 CACCACCAACACAATTCTCTCCACCCACTCAAGCTCATC
1 CACCACCAAGGCAATACTCGCCACCCACTCAAGCTCATC
* * * * *
8109482 CTCCACCAAGACAATACCCACCACCTACTCAAGCTCATC
1 CACCACCAAGGCAATACTCGCCACCCACTCAAGCTCATC
* * *
8109521 CACCACAAAGGCAATACTCGCCACCCACTCAAACACATC
1 CACCACCAAGGCAATACTCGCCACCCACTCAAGCTCATC
* * * **
8109560 AACCACCAATGCAATACT---CA-CCGC-CAA-CTCAAA
1 CACCACCAAGGCAATACTCGCCACCCACTCAAGCTCATC
* *
8109593 CTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATC
1 CACCACCAAGGCAATACTCGCCACCCACTCAAGCTCATC
* *
8109632 CTCCACCAAGGCAATTCTCGCCACCCACTCAAGGC-CATC
1 CACCACCAAGGCAATACTCGCCACCCACTCAA-GCTCATC
8109671 CACCACC
1 CACCACC
8109678 CACACAAACT
Statistics
Matches: 158, Mismatches: 31, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
33 17 0.11
34 3 0.02
35 3 0.02
36 4 0.03
37 3 0.02
38 3 0.02
39 123 0.78
40 2 0.01
ACGTcount: A:0.33, C:0.46, G:0.07, T:0.14
Consensus pattern (39 bp):
CACCACCAAGGCAATACTCGCCACCCACTCAAGCTCATC
Found at i:8109525 original size:78 final size:75
Alignment explanation
Indices: 8109421--8109688 Score: 213
Period size: 78 Copynumber: 3.5 Consensus size: 75
8109411 TCAAGCTCAT
** * *
8109421 CCACCACCTACTCAAGGTTGCACACCACCAACACAATTCTCTCCACCCACTCAAGCTCATCCTCC
1 CCACCACCTACTCAAGCAT-C-CACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCC
8109486 ACCAAGACAATAC
64 ACCAAG-CAATAC
* ** * * **
8109499 CCACCACCTACTCAAGCTCATCCACCACAAAGGCAATACTCGCCACCCACTCAAACACATCAACC
1 CCACCACCTACTCAAG--CATCCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCC
8109564 ACCAATGCAATAC
64 ACCAA-GCAATAC
* * * * ** *
8109577 TCACCGCCAACTCAA--A--CTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCAC
1 CCACCACCTACTCAAGCATCCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCCAC
*
8109638 CAAGGCAATTC
66 CAA-GCAATAC
* * * *
8109649 TCGCCACCCACTCAAGGCCATCCACCACCCACACAA-ACTC
1 CCACCACCTACTCAA-G-CATCCACCACCAACACAATACTC
8109689 ATCCTCCACC
Statistics
Matches: 150, Mismatches: 31, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
72 59 0.39
74 1 0.01
76 1 0.01
77 3 0.02
78 83 0.55
79 2 0.01
80 1 0.01
ACGTcount: A:0.33, C:0.46, G:0.07, T:0.14
Consensus pattern (75 bp):
CCACCACCTACTCAAGCATCCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCCAC
CAAGCAATAC
Found at i:8109662 original size:72 final size:77
Alignment explanation
Indices: 8109463--8109676 Score: 233
Period size: 72 Copynumber: 2.8 Consensus size: 77
8109453 ACAATTCTCT
* * * *
8109463 CCACCCACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCTACTCAAGCTCATCCACCACA
1 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCAACTCAA-CACATCCACCACA
*
8109528 AAGGCAATACTCG
65 AAGGCAATACCCG
* * ** * *
8109541 CCACCCACTCAAACACATCAACCACCAATGCAATACTCACCGCCAACTCAA-AC-TCCA-C-C-A
1 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCAACTCAACACATCCACCACAA
8109601 AGGCAATACCCG
66 AGGCAATACCCG
* * *
8109613 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATTCTCGCCACCCACTCAAGGC-CATCCACCAC
1 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCAACTCAA--CACATCCACCAC
8109677 CCACACAAAC
Statistics
Matches: 110, Mismatches: 20, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
72 54 0.49
73 1 0.01
74 2 0.02
75 8 0.07
76 2 0.02
77 1 0.01
78 42 0.38
ACGTcount: A:0.33, C:0.46, G:0.08, T:0.13
Consensus pattern (77 bp):
CCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCAACTCAACACATCCACCACAA
AGGCAATACCCG
Found at i:8109711 original size:39 final size:39
Alignment explanation
Indices: 8109668--8109851 Score: 140
Period size: 39 Copynumber: 4.6 Consensus size: 39
8109658 ACTCAAGGCC
* *
8109668 ATCCACCACCCACACAAACTCATCCTCCACCAATGCAAT
1 ATCCACCACCCACACAAACTCATCCACCACCAACGCAAT
* * *
8109707 ATCCACCACCTACACAAGCTCATTCACCACCAACGCAAT
1 ATCCACCACCCACACAAACTCATCCACCACCAACGCAAT
* * * * * *
8109746 ACCCGCCACCCACCCAAATTCATCCACCACCTACTCAAGGT
1 ATCCACCACCCACACAAACTCATCCACCACCAACGCAA--T
* * * *
8109787 -TGCACACCACCTACTCAAGCTCATCCACCACCAA--CAAA
1 AT-C-CACCACCCACACAAACTCATCCACCACCAACGCAAT
* *
8109825 ATCCTCACCACCCACTCAATCTCATCC
1 AT-C-CACCACCCACACAAACTCATCC
8109852 TCTCTCACCA
Statistics
Matches: 114, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
39 85 0.75
40 3 0.03
41 2 0.02
42 24 0.21
ACGTcount: A:0.33, C:0.47, G:0.04, T:0.16
Consensus pattern (39 bp):
ATCCACCACCCACACAAACTCATCCACCACCAACGCAAT
Found at i:8109735 original size:60 final size:60
Alignment explanation
Indices: 8109613--8109737 Score: 155
Period size: 60 Copynumber: 2.1 Consensus size: 60
8109603 GCAATACCCG
* * * *
8109613 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATTCTCGCCACCCACTCAAGGCCATCCA
1 CCACCCACACAAACTCATCCTCCACCAAGGCAATTCTCACCACCCACACAAGGCCATCCA
* * *
8109673 CCACCCACACAAACTCATCCTCCACCAATGCAATATC-CACCACCTACACAA-GCTCATTCA
1 CCACCCACACAAACTCATCCTCCACCAAGGCAAT-TCTCACCACCCACACAAGGC-CATCCA
8109733 CCACC
1 CCACC
8109738 AACGCAATAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
59 2 0.04
60 52 0.93
61 2 0.04
ACGTcount: A:0.30, C:0.48, G:0.06, T:0.15
Consensus pattern (60 bp):
CCACCCACACAAACTCATCCTCCACCAAGGCAATTCTCACCACCCACACAAGGCCATCCA
Found at i:8109815 original size:21 final size:21
Alignment explanation
Indices: 8109613--8109983 Score: 104
Period size: 21 Copynumber: 18.2 Consensus size: 21
8109603 GCAATACCCG
*
8109613 CCACCCACTCAAGCTCATCCT
1 CCACCCACTCAAGCTCATCCA
* ** * *
8109634 CCACCAAGGCAA-TTC-T-CG
1 CCACCCACTCAAGCTCATCCA
8109652 CCACCCACTCAAGGC-CATCCA
1 CCACCCACTCAA-GCTCATCCA
* * *
8109673 CCACCCACACAAACTCATCCT
1 CCACCCACTCAAGCTCATCCA
*
8109694 CCA-CCAATGCAA--T-ATCCA
1 CCACCCACT-CAAGCTCATCCA
* * *
8109712 CCACCTACACAAGCTCATTCA
1 CCACCCACTCAAGCTCATCCA
* * * *
8109733 CCACCAACGCAA--T-ACCCG
1 CCACCCACTCAAGCTCATCCA
* **
8109751 CCACCCACCCAAATTCATCCA
1 CCACCCACTCAAGCTCATCCA
* *
8109772 CCACCTACTCAAGGT--TGCACA
1 CCACCCACTCAAGCTCAT-C-CA
*
8109793 CCACCTACTCAAGCTCATCCA
1 CCACCCACTCAAGCTCATCCA
* ** *
8109814 CCA-CCA-ACAAAATCCT-CA
1 CCACCCACTCAAGCTCATCCA
*
8109832 CCACCCACTCAATCTCATCCTCTCTCA
1 CCACCCACTCAAGCTCA-----TC-CA
*
8109859 CCACCCACTCAAGCTCATCCT
1 CCACCCACTCAAGCTCATCCA
* ** *
8109880 CCACCAAGACAA--T-ACCCA
1 CCACCCACTCAAGCTCATCCA
8109898 CCACCCACTCAAGCTCATCCA
1 CCACCCACTCAAGCTCATCCA
* ** *
8109919 CCACCAAGGCAA--T-A-CTCG
1 CCACCCACTCAAGCTCATC-CA
* *
8109937 CCACCCACTCAAACACATCCA
1 CCACCCACTCAAGCTCATCCA
* * *
8109958 CCACCCACACAAACTCATCCT
1 CCACCCACTCAAGCTCATCCA
8109979 CCACC
1 CCACC
8109984 AAGGCAGTAC
Statistics
Matches: 250, Mismatches: 66, Indels: 68
0.65 0.17 0.18
Matches are distributed among these distances:
17 1 0.00
18 60 0.24
19 18 0.07
20 18 0.07
21 129 0.52
22 4 0.02
23 1 0.00
25 1 0.00
27 18 0.07
ACGTcount: A:0.32, C:0.48, G:0.05, T:0.15
Consensus pattern (21 bp):
CCACCCACTCAAGCTCATCCA
Found at i:8109853 original size:23 final size:23
Alignment explanation
Indices: 8109825--8109885 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 23
8109815 CACCAACAAA
*
8109825 ATCCTCACCACCCACTCAATCTC
1 ATCCTCACCACCCACTCAAGCTC
8109848 ATCCTCTCTCACCACCCACTCAAGCTC
1 A---TC-CTCACCACCCACTCAAGCTC
8109875 ATCCTCCACCA
1 ATCCT-CACCA
8109886 AGACAATACC
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
23 3 0.09
24 7 0.22
26 2 0.06
27 20 0.62
ACGTcount: A:0.25, C:0.52, G:0.02, T:0.21
Consensus pattern (23 bp):
ATCCTCACCACCCACTCAAGCTC
Found at i:8109858 original size:27 final size:27
Alignment explanation
Indices: 8109828--8109880 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
8109818 CAACAAAATC
*
8109828 CTCACCACCCACTCAATCTCATCCTCT
1 CTCACCACCCACTCAAGCTCATCCTCT
8109855 CTCACCACCCACTCAAGCTCATCCTC
1 CTCACCACCCACTCAAGCTCATCCTC
8109881 CACCAAGACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.53, G:0.02, T:0.23
Consensus pattern (27 bp):
CTCACCACCCACTCAAGCTCATCCTCT
Found at i:8109869 original size:66 final size:66
Alignment explanation
Indices: 8109791--8109917 Score: 193
Period size: 66 Copynumber: 1.9 Consensus size: 66
8109781 CAAGGTTGCA
* *
8109791 CACCACCTACTCAAGCTCATCCACCACCAACAAAAT-CCTCACCACCCACTCAATCTCATCCTCT
1 CACCACCCACTCAAGCTCATCCACCACCAACAAAATACC-CACCACCCACTCAAGCTCATCCTCT
8109855 CT
65 CT
* * *
8109857 CACCACCCACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCC
1 CACCACCCACTCAAGCTCATCCACCACCAACAAAATACCCACCACCCACTCAAGCTCATCC
8109918 ACCACCAAGG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 53 0.96
67 2 0.04
ACGTcount: A:0.31, C:0.50, G:0.03, T:0.17
Consensus pattern (66 bp):
CACCACCCACTCAAGCTCATCCACCACCAACAAAATACCCACCACCCACTCAAGCTCATCCTCTC
T
Found at i:8109900 original size:39 final size:39
Alignment explanation
Indices: 8109857--8109962 Score: 158
Period size: 39 Copynumber: 2.7 Consensus size: 39
8109847 CATCCTCTCT
*
8109857 CACCACCCACTCAAGCTCATCCTCCACCAAGACAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAAGACAATACC
* *
8109896 CACCACCCACTCAAGCTCATCCACCACCAAGGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAAGACAATACC
* * *
8109935 CGCCACCCACTCAAACACATCCACCACC
1 CACCACCCACTCAAGCTCATCCACCACC
8109963 CACACAAACT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.33, C:0.50, G:0.06, T:0.11
Consensus pattern (39 bp):
CACCACCCACTCAAGCTCATCCACCACCAAGACAATACC
Found at i:8109962 original size:60 final size:60
Alignment explanation
Indices: 8109895--8110562 Score: 376
Period size: 60 Copynumber: 11.1 Consensus size: 60
8109885 AAGACAATAC
* * * *
8109895 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATACTCGCCACCCACTCAAACACAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
* * *
8109955 CCACCACCCACACAAACTCATCCTCCACCAAGGCAGTACCCACCGCCCACTCAAACACAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
** *
8110015 CCACCACCAATGCAATACTCACCGCCAACTCAAACTCCACCAAGGCAATACCCGCCACCCACTCA
1 CCACCACC----C---ACTCA-----AACTCATCCTCCACCAAGGCAATACCCACCACCCACTCA
* *
8110080 AGCTCAT
54 AACACAT
* * ** * * *
8110087 CCTCCACCAAGGCAATACTCA-CCACCCACTCAAGGCCAT--CCACCACCCATTCAAACACAT
1 CCACCACCCACTCAA-ACTCATCC-TCCAC-CAAGGCAATACCCACCACCCACTCAAACACAT
* * * * * *
8110147 CCTCCA-CCAATGCAATACCCA-CCACCCACTCAA-ACACAT--CCACCACCAACTC-AA-AC-T
1 CCACCACCCACT-CAA-ACTCATCC-TCCAC-CAAGGCA-ATACCCACCACCCACTCAAACACAT
* ** ** ** * ** *
8110204 CCTCCACAAAGGCAATAC-CCGCCACCCACTCAA-GC--TCATTCACCACCCACTCAAGGC-CAT
1 CCACCACCCACTCAA-ACTCATCC-TCCAC-CAAGGCAAT-ACCCACCACCCACTCAA-ACACAT
* ** * *** *
8110264 CCGCCACCCACTCAAGTTTATCCTCCACCAAGGCAATACTTGCCACCCACTCAAGGC-CAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAA-ACACAT
* * * *
8110324 CCACCACCAACTCAAA--C-TCCTCCACAAAGGCAATACCCGCCACCCACTCAAGGC-CAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAA-ACACAT
* ** * * * *
8110381 CCGCCACCCACTCAAGTTCATCCTTCACCAAGGCAATACCCACCACCCATTCAAGCTCAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
* * * *
8110441 CCACCACCTACACAAACTCACCCTCCACCAAGGCAATGCCCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
* *
8110501 CCACCACCAACTCAAA--C-TCCTCCACCAAGGCAATACCCGCCACCCACTCAAACACAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
8110558 CCACC
1 CCACC
8110563 GCCAAAGCTA
Statistics
Matches: 487, Mismatches: 87, Indels: 71
0.76 0.13 0.11
Matches are distributed among these distances:
54 1 0.00
56 1 0.00
57 129 0.26
58 8 0.02
59 15 0.03
60 261 0.54
61 10 0.02
62 8 0.02
64 1 0.00
65 3 0.01
67 4 0.01
72 46 0.09
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.13
Consensus pattern (60 bp):
CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
Found at i:8110016 original size:99 final size:99
Alignment explanation
Indices: 8109857--8110049 Score: 287
Period size: 99 Copynumber: 1.9 Consensus size: 99
8109847 CATCCTCTCT
* * * *
8109857 CACCACCCACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCCACCA
1 CACCACCCACACAAACTCATCCTCCACCAAGACAATACCCACCACCCACTCAAACACATCCACCA
* *
8109922 CCAAGGCAATACTCGCCACCCACTCAAACACATC
66 CCAAGGCAATACTCACCACCAACTCAAACACATC
* * *
8109956 CACCACCCACACAAACTCATCCTCCACCAAGGCAGTACCCACCGCCCACTCAAACACATCCACCA
1 CACCACCCACACAAACTCATCCTCCACCAAGACAATACCCACCACCCACTCAAACACATCCACCA
* *
8110021 CCAATGCAATACTCACCGCCAACTCAAAC
66 CCAAGGCAATACTCACCACCAACTCAAAC
8110050 TCCACCAAGG
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 83 1.00
ACGTcount: A:0.34, C:0.48, G:0.06, T:0.11
Consensus pattern (99 bp):
CACCACCCACACAAACTCATCCTCCACCAAGACAATACCCACCACCCACTCAAACACATCCACCA
CCAAGGCAATACTCACCACCAACTCAAACACATC
Found at i:8110059 original size:72 final size:72
Alignment explanation
Indices: 8109977--8110119 Score: 205
Period size: 72 Copynumber: 2.0 Consensus size: 72
8109967 CAAACTCATC
* * * *
8109977 CTCCACCAAGGCAGTACCCACCGCCCACTCAAACACATCCACCACCAATGCAATACTCACCGCCA
1 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
8110042 ACTCAAA
66 ACTCAAA
* * * * *
8110049 CTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCC
1 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
8110114 ACTCAA
66 ACTCAA
8110120 GGCCATCCAC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.33, C:0.47, G:0.08, T:0.12
Consensus pattern (72 bp):
CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
ACTCAAA
Found at i:8110079 original size:132 final size:132
Alignment explanation
Indices: 8109793--8110181 Score: 349
Period size: 132 Copynumber: 2.9 Consensus size: 132
8109783 AGGTTGCACA
* * * * * *
8109793 CCACCTACTCAAGCTCATCCACCACCAACAAAATCCTCACCACCCACTCAA-TCTCATCCTCTCT
1 CCACCCACTCAAACACATCCACCACCAACACAATACTCACCACCCACTCAAGGC-CA-----TC-
* * * * *
8109857 CACCACCCACTCAAGCTCATCCTCCACCAA-GACAATACCCACCACCCACTCAAGCTCATCCACC
59 CACCACCCACTCAAACACATCCACCACCAATG-CAATACCCACCACCAACTCAA----A--CTCC
*
8109921 ACCAAGGCAATACTCG
117 ACCAAGGCAATACCCG
* *
8109937 CCACCCACTCAAACACATCCACCACCCACACAA-ACTCATCC-TCCAC-CAAGG-CAGTACCCAC
1 CCACCCACTCAAACACATCCACCACCAACACAATACTCA-CCACCCACTCAAGGCCA-T--CCAC
* * *
8109998 CGCCCACTCAAACACATCCACCACCAATGCAATACTCACCGCCAACTCAAACTCCACCAAGGCAA
62 CACCCACTCAAACACATCCACCACCAATGCAATACCCACCACCAACTCAAACTCCACCAAGGCAA
8110063 TACCCG
127 TACCCG
* * * **
8110069 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCCACTCAAGGCCATCCACCACC
1 CCACCCACTCAAACACATCCACCACCAACACAATACTCACCACCCACTCAAGGCCATCCACCACC
* * *
8110134 CATTCAAACACATCCTCCACCAATGCAATACCCACCACCCACTCAAAC
66 CACTCAAACACATCCACCACCAATGCAATACCCACCACCAACTCAAAC
8110182 ACATCCACCA
Statistics
Matches: 205, Mismatches: 31, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
132 97 0.47
133 9 0.04
134 7 0.03
135 2 0.01
137 1 0.00
138 44 0.21
139 2 0.01
141 2 0.01
142 3 0.01
143 8 0.04
144 30 0.15
ACGTcount: A:0.33, C:0.48, G:0.06, T:0.13
Consensus pattern (132 bp):
CCACCCACTCAAACACATCCACCACCAACACAATACTCACCACCCACTCAAGGCCATCCACCACC
CACTCAAACACATCCACCACCAATGCAATACCCACCACCAACTCAAACTCCACCAAGGCAATACC
CG
Found at i:8110120 original size:39 final size:39
Alignment explanation
Indices: 8109955--8110604 Score: 233
Period size: 39 Copynumber: 16.7 Consensus size: 39
8109945 TCAAACACAT
* * * *
8109955 CCACCACCCACACAAACTCATCCTCCACCAAGGCAGTAC
1 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
* * * *
8109994 CCACCGCCCACTCAAACACATCCACCACCAATGCAATAC
1 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
* * * *
8110033 TCACCGCCAACTCAA----A--CTCCACCAAGGCAATAC
1 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
* *
8110066 CCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATAC
1 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
* * **
8110105 TCACCACCCACTCAAGGC-CATCCACCACCCATTCAA-AC
1 CCACCACCCACTCAA-GCTCATCCACCACCAAGGCAATAC
* * * * ** *
8110143 ACATCC-TCCAC-CAATGCAAT-ACCCACCACCCACTCAAACAC
1 CCA-CCACCCACTCAA-GC--TCATCCACCACCAAGGC-AATAC
* * *
8110184 ATCCACCACCAACTCAAACTCCTCCA-CA--AAGGCAATAC
1 --CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
* *
8110222 CCGCCACCCACTCAAGCTCATTCACCACCCACTCAAGGCCAT--
1 CCACCACCCACTCAAGCTCA-T--CCA-CCAC-CAAGGCAATAC
* * * *
8110264 CCGCCACCCACTCAAGTTTATCCTCCACCAAGGCAATAC
1 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
*** **
8110303 TTGCCACCCACTCAAGGC-CATCCACCACCAACTCAA-AC
1 CCACCACCCACTCAA-GCTCATCCACCACCAAGGCAATAC
* ** ** * ** *
8110341 TCCTCCACAAAGGCAATAC-CCGCCACCCACTCAAGGCCAT--
1 -CCACCACCCACTCAA-GCTCATCCA-CCAC-CAAGGCAATAC
* * **
8110381 CCGCCACCCACTCAAGTTCATCCTTCACCAAGGCAATAC
1 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
* * **
8110420 CCACCACCCATTCAAGCTCATCCACCACCTACACAA-AC
1 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
* * * **
8110458 TCACC-CTCCAC-CAAGGC-AATGCCCACCACCCACTCAA-AC
1 CCACCAC-CCACTCAA-GCTCAT--CCACCACCAAGGCAATAC
* *
8110497 ACATCCA-CCAC-CAA-CTCAAACTCCTCCACCAAGGCAATAC
1 CCA-CCACCCACTCAAGCTC--A-TCCACCACCAAGGCAATAC
* * * * * *
8110537 CCGCCACCCACTCAAACACATCCACCGCCAAAGCTATAC
1 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
*
8110576 CCACCACCTACTCAAGCTCATCCACCACC
1 CCACCACCCACTCAAGCTCATCCACCACC
8110605 CACTCAAACA
Statistics
Matches: 453, Mismatches: 108, Indels: 100
0.69 0.16 0.15
Matches are distributed among these distances:
33 26 0.06
35 1 0.00
36 16 0.04
37 30 0.07
38 32 0.07
39 270 0.60
40 20 0.04
41 17 0.04
42 25 0.06
43 6 0.01
44 10 0.02
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.13
Consensus pattern (39 bp):
CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATAC
Found at i:8110147 original size:21 final size:21
Alignment explanation
Indices: 8110106--8110202 Score: 87
Period size: 21 Copynumber: 4.8 Consensus size: 21
8110096 AGGCAATACT
*
8110106 CACCACCCACTCAAGGC-CATC
1 CACCACCCACTCAA-ACACATC
*
8110127 CACCACCCATTCAAACACATC
1 CACCACCCACTCAAACACATC
* * *
8110148 CTCCA-CCAATGC-AATAC--C
1 CACCACCCACT-CAAACACATC
8110166 CACCACCCACTCAAACACATC
1 CACCACCCACTCAAACACATC
*
8110187 CACCACCAACTCAAAC
1 CACCACCCACTCAAAC
8110203 TCCTCCACAA
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
18 6 0.10
19 8 0.13
20 9 0.15
21 38 0.62
ACGTcount: A:0.36, C:0.49, G:0.03, T:0.11
Consensus pattern (21 bp):
CACCACCCACTCAAACACATC
Found at i:8110250 original size:81 final size:79
Alignment explanation
Indices: 8110164--8110338 Score: 189
Period size: 81 Copynumber: 2.2 Consensus size: 79
8110154 CAATGCAATA
8110164 CCCACCACCCACTCAA-ACACATCCACCACCAACTCAA-ACTCCTCCACAAAGGCAATACCCGCC
1 CCCACCACCCACTCAAGAC-CATCCACCACCAACTCAATA-TCCTCCACAAAGGCAATACCCGCC
8110227 ACCCACTCAA-GCTCAT
64 ACCCACTCAAGGC-CAT
* * * * * **
8110243 -TCACCACCCACTCAAGGCCATCCGCCACCCACTCAAGTTTATCCTCCACCAAGGCAATACTTGC
1 CCCACCACCCACTCAAGACCATCCACCACCAACTCAA---TATCCTCCACAAAGGCAATACCCGC
8110307 CACCCACTCAAGGCCAT
63 CACCCACTCAAGGCCAT
*
8110324 -CCACCACCAACTCAA
1 CCCACCACCCACTCAA
8110339 ACTCCTCCAC
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
78 30 0.37
79 1 0.01
81 47 0.58
82 3 0.04
ACGTcount: A:0.31, C:0.47, G:0.07, T:0.14
Consensus pattern (79 bp):
CCCACCACCCACTCAAGACCATCCACCACCAACTCAATATCCTCCACAAAGGCAATACCCGCCAC
CCACTCAAGGCCAT
Found at i:8110271 original size:138 final size:138
Alignment explanation
Indices: 8110105--8110396 Score: 435
Period size: 138 Copynumber: 2.1 Consensus size: 138
8110095 AAGGCAATAC
* *
8110105 TCACCACCCACTCAAGGCCATCCACCACCCATTCAAACACATCCTCCACCAATGCAATACCCACC
1 TCACCACCCACTCAAGGCCATCCACCACCCACTCAAACACATCCTCCACCAAGGCAATACCCACC
8110170 ACCCACTCAA-ACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACT
66 ACCCACTCAAGAC-CATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACT
8110234 CAA-GCTCAT
130 CAAGGC-CAT
* **** ***
8110243 TCACCACCCACTCAAGGCCATCCGCCACCCACTCAAGTTTATCCTCCACCAAGGCAATACTTGCC
1 TCACCACCCACTCAAGGCCATCCACCACCCACTCAAACACATCCTCCACCAAGGCAATACCCACC
*
8110308 ACCCACTCAAGGCCATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACTC
66 ACCCACTCAAGACCATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACTC
8110373 AAGGCCAT
131 AAGGCCAT
* *
8110381 CCGCCACCCACTCAAG
1 TCACCACCCACTCAAG
8110397 TTCATCCTTC
Statistics
Matches: 139, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
138 136 0.98
139 3 0.02
ACGTcount: A:0.32, C:0.47, G:0.08, T:0.13
Consensus pattern (138 bp):
TCACCACCCACTCAAGGCCATCCACCACCCACTCAAACACATCCTCCACCAAGGCAATACCCACC
ACCCACTCAAGACCATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACTC
AAGGCCAT
Found at i:8110291 original size:21 final size:21
Alignment explanation
Indices: 8110069--8110664 Score: 86
Period size: 21 Copynumber: 30.2 Consensus size: 21
8110059 GCAATACCCG
*
8110069 CCACCCACTCAAGCTCATCCT
1 CCACCCACTCAAGCTCATCCA
* **
8110090 CCACCAAGGCAA--T-A-CTCA
1 CCACCCACTCAAGCTCATC-CA
8110108 CCACCCACTCAAGGC-CATCCA
1 CCACCCACTCAA-GCTCATCCA
* * * *
8110129 CCACCCATTCAAACACATCCT
1 CCACCCACTCAAGCTCATCCA
* *
8110150 CCA-CCAATGCAA--T-ACCCA
1 CCACCCACT-CAAGCTCATCCA
* *
8110168 CCACCCACTCAAACACATCCA
1 CCACCCACTCAAGCTCATCCA
* * *
8110189 CCACCAACTCAAACTCCTCCA
1 CCACCCACTCAAGCTCATCCA
* ** * *
8110210 -CA--AAGGCAA--T-ACCCG
1 CCACCCACTCAAGCTCATCCA
*
8110225 CCACCCACTCAAGCTCATTCA
1 CCACCCACTCAAGCTCATCCA
*
8110246 CCACCCACTCAAGGC-CATCCG
1 CCACCCACTCAA-GCTCATCCA
* * *
8110267 CCACCCACTCAAGTTTATCCT
1 CCACCCACTCAAGCTCATCCA
* ** **
8110288 CCACCAAGGCAA--T-A-CTTG
1 CCACCCACTCAAGCTCATC-CA
8110306 CCACCCACTCAAGGC-CATCCA
1 CCACCCACTCAA-GCTCATCCA
* * *
8110327 CCACCAACTCAAACTCCTCCA
1 CCACCCACTCAAGCTCATCCA
* ** * *
8110348 -CA--AAGGCAA--T-ACCCG
1 CCACCCACTCAAGCTCATCCA
*
8110363 CCACCCACTCAAGGC-CATCCG
1 CCACCCACTCAA-GCTCATCCA
* *
8110384 CCACCCACTCAAGTTCATCCT
1 CCACCCACTCAAGCTCATCCA
* * ** *
8110405 TCACCAAGGCAA--T-ACCCA
1 CCACCCACTCAAGCTCATCCA
*
8110423 CCACCCATTCAAGCTCATCCA
1 CCACCCACTCAAGCTCATCCA
* * * * *
8110444 CCACCTACACAAACTCACCCT
1 CCACCCACTCAAGCTCATCCA
* **
8110465 CCACCAAGGCAA--TGC--CCA
1 CCACCCACTCAAGCT-CATCCA
* *
8110483 CCACCCACTCAAACACATCCA
1 CCACCCACTCAAGCTCATCCA
* * *
8110504 CCACCAACTCAAACTCCTCCA
1 CCACCCACTCAAGCTCATCCA
** * *
8110525 CCA---AGGCAA--T-ACCCG
1 CCACCCACTCAAGCTCATCCA
* *
8110540 CCACCCACTCAAACACATCCA
1 CCACCCACTCAAGCTCATCCA
*
8110561 CC-GCCA---AAGCT-ATACCCA
1 CCACCCACTCAAGCTCAT-C-CA
*
8110579 CCACCTACTCAAGCTCATCCA
1 CCACCCACTCAAGCTCATCCA
* *
8110600 CCACCCACTCAAACACATCCA
1 CCACCCACTCAAGCTCATCCA
* *
8110621 CCACCAACACAA--T-A-CTCA
1 CCACCCACTCAAGCTCATC-CA
*
8110639 CCACCCACTCAAGCCCATCCA
1 CCACCCACTCAAGCTCATCCA
8110660 CCACC
1 CCACC
8110665 ACGGCAATAC
Statistics
Matches: 402, Mismatches: 112, Indels: 122
0.63 0.18 0.19
Matches are distributed among these distances:
15 9 0.02
16 9 0.02
17 7 0.02
18 95 0.24
19 11 0.03
20 18 0.04
21 240 0.60
22 11 0.03
23 2 0.00
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.13
Consensus pattern (21 bp):
CCACCCACTCAAGCTCATCCA
Found at i:8110504 original size:18 final size:18
Alignment explanation
Indices: 8110483--8110562 Score: 54
Period size: 18 Copynumber: 4.3 Consensus size: 18
8110473 GCAATGCCCA
8110483 CCACCCACTCAAACACAT
1 CCACCCACTCAAACACAT
* *
8110501 CCACCACCAACTCAAACTCCT
1 CCA-C-CC-ACTCAAACACAT
* ** **
8110522 CCACCAAGGCAATAC-CCG
1 CCACCCACTCAA-ACACAT
8110540 CCACCCACTCAAACACAT
1 CCACCCACTCAAACACAT
8110558 CCACC
1 CCACC
8110563 GCCAAAGCTA
Statistics
Matches: 46, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
17 2 0.04
18 24 0.52
19 4 0.09
20 3 0.07
21 13 0.28
ACGTcount: A:0.35, C:0.51, G:0.04, T:0.10
Consensus pattern (18 bp):
CCACCCACTCAAACACAT
Found at i:8110526 original size:99 final size:99
Alignment explanation
Indices: 8110423--8110887 Score: 318
Period size: 99 Copynumber: 4.7 Consensus size: 99
8110413 GCAATACCCA
* * * * * *
8110423 CCACCCATTCAAGCTCATCCACCACCTACACAAACTCACCCTCCACCAAGGCAATGCCCACCACC
1 CCACCCACTCAAGCTCATCCACCACCTACTCAAGCTCATCCACCACCAAGGCAATACCCACCACC
*
8110488 CACTCAAACACATCCACCACCAACTCAAACTCCT
66 CACTCAAACACATCCACCACCAACTCAAACTCCG
* ** * * * * * * * *
8110522 CCACCAAGGCAA--T-ACCCGCCACCCACTCAAACACATCCACCGCCAAAGCTATACCCACCACC
1 CCACCCACTCAAGCTCATCCACCACCTACTCAAGCTCATCCACCACCAAGGCAATACCCACCACC
* * * * * **
8110584 TACTCAAGCTCATCCACCACCCACTCAAACACAT
66 CACTCAAACACATCCACCACCAACTCAAACTCCG
* * * * * *
8110618 CCA-CCAC-CAA-CACAATACTCACCACCCACTCAAGCCCATCCACCACCACGGCAATACTCGCC
1 CCACCCACTCAAGCTC-AT-C-CACCACCTACTCAAGCTCATCCACCACCAAGGCAATACCCACC
* *
8110680 ACCCATTCAAACACATCCACCACCAA-TGCAATC-CACG
63 ACCCACTCAAACACATCCACCACCAACT-CAAACTC-CG
* * ** ** * * * * *
8110717 CCACCCACTAAAGGTTGTGAACCACCTACTAAAGCTCATCCTCCACCGAGGCAATACTCACCTCC
1 CCACCCACTCAAGCTCATCCACCACCTACTCAAGCTCATCCACCACCAAGGCAATACCCACCACC
* * *
8110782 CACTCAAACTCATCCACCACCATCCCAATACT-CG
66 CACTCAAACACATCCACCACCAACTCAA-ACTCCG
* * * * * ** *
8110816 CCACCCACTCAAGGTCGTACACCACCTACTCAAGCTCATCCACCACCAACGCAACATTCACCGCC
1 CCACCCACTCAAGCTCATCCACCACCTACTCAAGCTCATCCACCACCAAGGCAATACCCACCACC
8110881 CACTCAA
66 CACTCAA
8110888 GGTCATACGC
Statistics
Matches: 281, Mismatches: 72, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
94 3 0.01
95 2 0.01
96 69 0.25
97 2 0.01
98 3 0.01
99 194 0.69
100 5 0.02
101 3 0.01
ACGTcount: A:0.33, C:0.47, G:0.07, T:0.14
Consensus pattern (99 bp):
CCACCCACTCAAGCTCATCCACCACCTACTCAAGCTCATCCACCACCAAGGCAATACCCACCACC
CACTCAAACACATCCACCACCAACTCAAACTCCG
Found at i:8110601 original size:117 final size:117
Alignment explanation
Indices: 8109895--8110637 Score: 442
Period size: 117 Copynumber: 6.4 Consensus size: 117
8109885 AAGACAATAC
* * ** * * ** * *
8109895 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATACT-CGCCACCCACTCAAACACATCCAC
1 CCACCACCCACTCAAACACATCCACCACCAACTCAATACTCCTCCACCAAGGC-AATAC--CCGC
* * * * * *
8109959 CACCCACACAAACTCATCCTCCACCAAGGCAGTACCCACCGCCCACTCAAACACAT
63 CACCCACTCAAACTCATCCACCACCAAAGCA-TACCCACCACCCACTCAAGCTCAT
* * *
8110015 CCACCA-CCAATGC-AATAC-T-CACCGCCAACTCAA-A---CTCCACCAAGGCAATACCCGCCA
1 CCACCACCCACT-CAAACACATCCACCACCAACTCAATACTCCTCCACCAAGGCAATACCCGCCA
* * * *
8110072 CCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCCACTCAAGGC-CAT
65 CCCACTCAAACTCATCCACCACCAAAGC-ATACCCACCACCCACTCAA-GCTCAT
* * * * ** * *
8110126 CCACCACCCATTCAAACACATCCTCCACCAA-TGCAATAC-CCACCACCCACTCAAACACATCCA
1 CCACCACCCACTCAAACACATCCACCACCAACT-CAATACTCCTCCACCAAGGC-AATAC--CCG
* * * *
8110189 CCACCAACTCAAACTCCTCCA-CA--AAGGCAATACCCGCCACCCACTCAAGCTCAT
62 CCACCCACTCAAACTCATCCACCACCAAAGC-ATACCCACCACCCACTCAAGCTCAT
* * * * **
8110243 TCACCACCCACTCAAGGC-CATCCGCCACCCACTCAAGTTTA-TCCTCCACCAAGGCAATACTTG
1 CCACCACCCACTCAA-ACACATCCACCACCAACTCAA---TACTCCTCCACCAAGGCAATACCCG
* ** * * ** ** *
8110306 CCACCCACTCAAGGC-CATCCACCACCAACTCAAACTCCTCCACAAAGGCAA--T-AC
62 CCACCCACTCAA-ACTCATCCACCACCAAAGCATAC-CCACCACCCACTCAAGCTCAT
* * * * * * *
8110360 CCGCCACCCACTCAAGGC-CATCCGCCACCCACTCAAGTTCATCCTTCACCAAGGCAATACCCAC
1 CCACCACCCACTCAA-ACACATCCACCACCAACTCAA-TAC-TCCTCCACCAAGGCAATACCCGC
* * * * * *
8110424 CACCCATTCAAGCTCATCCACCACCTACA-CAAACTCACC-CTCCAC-CAAGGC-AAT
63 CACCCACTCAAACTCATCCACCACC-AAAGCATACCCACCAC-CCACTCAA-GCTCAT
8110478 GCCCACCACCCACTCAAACACATCCACCACCAACTCAA-ACTCCTCCACCAAGGCAATACCCGCC
1 --CCACCACCCACTCAAACACATCCACCACCAACTCAATACTCCTCCACCAAGGCAATACCCGCC
* * *
8110542 ACCCACTCAAACACATCCACCGCCAAAGCTATACCCACCACCTACTCAAGCTCAT
64 ACCCACTCAAACTCATCCACCACCAAAGC-ATACCCACCACCCACTCAAGCTCAT
*
8110597 CCACCACCCACTCAAACACATCCACCACCAACACAATACTC
1 CCACCACCCACTCAAACACATCCACCACCAACTCAATACTC
8110638 ACCACCCACT
Statistics
Matches: 486, Mismatches: 93, Indels: 90
0.73 0.14 0.13
Matches are distributed among these distances:
111 57 0.12
112 10 0.02
113 6 0.01
114 18 0.04
115 6 0.01
116 11 0.02
117 246 0.51
118 30 0.06
119 22 0.05
120 80 0.16
ACGTcount: A:0.33, C:0.48, G:0.07, T:0.13
Consensus pattern (117 bp):
CCACCACCCACTCAAACACATCCACCACCAACTCAATACTCCTCCACCAAGGCAATACCCGCCAC
CCACTCAAACTCATCCACCACCAAAGCATACCCACCACCCACTCAAGCTCAT
Found at i:8110603 original size:177 final size:177
Alignment explanation
Indices: 8110218--8110640 Score: 439
Period size: 177 Copynumber: 2.4 Consensus size: 177
8110208 CACAAAGGCA
* * * * * * ** *
8110218 ATACCCGCCACCCACTCAAGCTCATTCACCACCCACTCAAGGCCATCCGCCACCCACTCAAGTTT
1 ATACCCACCACCAACTCAAGCTCATCCACCACCCACTCAA-GCCATCCACCACCAACACAAACTC
* *** *
8110283 ATCCTCCACCAAGGCAATACTTGCCACCCACTCAAGGCCATCCACCACCAACTCAAACTCCTCCA
65 ACCCTCCACCAAGGCAATACCCACCACCCACTCAAGACCATCCACCACCAACTCAAACTCCTCCA
* *
8110348 CAAAGGCAATACCCGCCACCCACTCAAGGCCATCCGCCACCCACTCAAGT
130 CAAAGGCAATACCCGCCACCCACTCAAGACCATCCACCACCCA--CAAGT
* ** ** * * *
8110398 -TCATCCTTCACCAAGGCAA--T-ACCCACCACCCATTCAAGCTCATCCACCACCTACACAAACT
1 AT-ACCCACCACCAACTCAAGCTCATCCACCACCCACTCAAGC-CATCCACCACCAACACAAACT
*
8110459 CACCCTCCACCAAGGCAATGCCCACCACCCACTCAA-ACACATCCACCACCAACTCAAACTCCTC
64 CACCCTCCACCAAGGCAATACCCACCACCCACTCAAGAC-CATCCACCACCAACTCAAACTCCTC
* *
8110523 CACCAAGGCAATACCCGCCACCCACTCAA-ACACATCCACC-GCCA-AAGCT
128 CACAAAGGCAATACCCGCCACCCACTCAAGAC-CATCCACCACCCACAAG-T
* *
8110572 ATACCCACCACCTACTCAAGCTCATCCACCACCCACTCAAACACATCCACCACCAACACAATACT
1 ATACCCACCACCAACTCAAGCTCATCCACCACCCACTCAAGC-CATCCACCACCAACACAA-ACT
8110637 CACC
64 CACC
8110641 ACCCACTCAA
Statistics
Matches: 197, Mismatches: 36, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
173 3 0.02
174 12 0.06
175 1 0.01
176 8 0.04
177 153 0.78
178 8 0.04
179 1 0.01
180 11 0.06
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.13
Consensus pattern (177 bp):
ATACCCACCACCAACTCAAGCTCATCCACCACCCACTCAAGCCATCCACCACCAACACAAACTCA
CCCTCCACCAAGGCAATACCCACCACCCACTCAAGACCATCCACCACCAACTCAAACTCCTCCAC
AAAGGCAATACCCGCCACCCACTCAAGACCATCCACCACCCACAAGT
Found at i:8110619 original size:60 final size:60
Alignment explanation
Indices: 8110420--8110664 Score: 211
Period size: 60 Copynumber: 4.1 Consensus size: 60
8110410 AAGGCAATAC
* * * * * * *
8110420 CCACCACCCATTCAAGCTCATCCACCACCTACACAA-ACTCACC-CTCCAC-CAAGGCAAT
1 CCACCACCCACTCAAACACATCCACCACCAACACAATACCCACCAC-CCACTCAAGCCCAT
* * * * *
8110478 GCCCACCACCCACTCAAACACATCCACCACCAACTCAA-A--CTCC-TCCAC-CAAGGCAAT
1 --CCACCACCCACTCAAACACATCCACCACCAACACAATACCCACCACCCACTCAAGCCCAT
* * * * *
8110535 ACCCGCCACCCACTCAAACACATCCACCGCCAA-AGCTATACCCACCACCTACTCAAGCTCAT
1 --CCACCACCCACTCAAACACATCCACCACCAACA-CAATACCCACCACCCACTCAAGCCCAT
*
8110597 CCACCACCCACTCAAACACATCCACCACCAACACAATACTCACCACCCACTCAAGCCCAT
1 CCACCACCCACTCAAACACATCCACCACCAACACAATACCCACCACCCACTCAAGCCCAT
8110657 CCACCACC
1 CCACCACC
8110665 ACGGCAATAC
Statistics
Matches: 154, Mismatches: 24, Indels: 14
0.80 0.12 0.07
Matches are distributed among these distances:
57 45 0.29
58 4 0.03
60 95 0.62
61 4 0.03
62 6 0.04
ACGTcount: A:0.34, C:0.50, G:0.04, T:0.11
Consensus pattern (60 bp):
CCACCACCCACTCAAACACATCCACCACCAACACAATACCCACCACCCACTCAAGCCCAT
Found at i:8110700 original size:156 final size:156
Alignment explanation
Indices: 8110051--8110682 Score: 428
Period size: 156 Copynumber: 4.0 Consensus size: 156
8110041 AACTCAAACT
* * * * * * * *
8110051 CCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCCAC
1 CCACCAAGGCAATACCAGCCACCCACTCAAACACATCCACCGCCAAAGCTATACCCACCACCCAC
** * * **
8110116 TCAAGGC-CATCCACCACCCATTCAAACACATCCTCCACCAATGCAATACCCACCACCCACTCAA
66 TCAA-GCTCATCCACCACCCACACAAACACACCCACCACCAACACAATACCCACCACCCACTCAA
* *
8110180 ACACATCCACCACCAACTCAAACTCCT
130 ACACATCCACCACCAACGCAAACTCCG
* * * * * * * *
8110207 CCACAAAGGCAATACCCGCCACCCACTCAAGCTCATTCACCACCCACTCAAGGCCAT--CCGCCA
1 CCACCAAGGCAATACCAGCCACCCACTCAAACACA-T--CCA-CCGC-CAAAGCTATACCCACCA
* * * * ** *** ** *
8110270 CCCACTCAAGTTTATCCTCCACCAAGGCAATAC-TTGCCACCCACTCAAGGCCAT--CCACCACC
61 CCCACTCAAGCTCATCCACCACCCACACAA-ACACACCCA-CCAC-CAACACAATACCCACCACC
* * * *
8110332 AACTC-AA-AC-TCCTCCACAAAGGCAATAC-CCG
123 CACTCAAACACATCCACCACCAACGCAA-ACTCCG
* *** ** * * *
8110363 CCACCCACTCAAGGCCAT-CC-GCCACCCACTCAAGTTCATCCTTCACCAAGGCAATACCCACCA
1 ----CCAC-CAAGGCAATACCAGCCACCCACTCAAACACATCCACCGCCAAAGCTATACCCACCA
* * * * ** *
8110426 CCCATTCAAGCTCATCCACCACCTACACAAACTCACCCTCCACCAAGGCAATGCCCACCACCCAC
61 CCCACTCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACACAATACCCACCACCCAC
* *
8110491 TCAAACACATCCACCACCAACTCAAACTCCT
126 TCAAACACATCCACCACCAACGCAAACTCCG
* *
8110522 CCACCAAGGCAATACCCGCCACCCACTCAAACACATCCACCGCCAAAGCTATACCCACCACCTAC
1 CCACCAAGGCAATACCAGCCACCCACTCAAACACATCCACCGCCAAAGCTATACCCACCACCCAC
* * * *
8110587 TCAAGCTCATCCACCACCCACTCAAACACATCCACCACCAACACAATACTCACCACCCACTCAAG
66 TCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACACAATACCCACCACCCACTCAAA
*
8110652 CCCATCCACCACC-ACGGCAATACT-CG
131 CACATCCACCACCAAC-GCAA-ACTCCG
8110678 CCACC
1 CCACC
8110683 CATTCAAACA
Statistics
Matches: 376, Mismatches: 72, Indels: 56
0.75 0.14 0.11
Matches are distributed among these distances:
154 24 0.06
155 17 0.05
156 206 0.55
157 10 0.03
158 8 0.02
159 73 0.19
160 16 0.04
161 22 0.06
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.13
Consensus pattern (156 bp):
CCACCAAGGCAATACCAGCCACCCACTCAAACACATCCACCGCCAAAGCTATACCCACCACCCAC
TCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACACAATACCCACCACCCACTCAAA
CACATCCACCACCAACGCAAACTCCG
Found at i:8110702 original size:21 final size:21
Alignment explanation
Indices: 8110576--8110703 Score: 90
Period size: 21 Copynumber: 6.4 Consensus size: 21
8110566 AAAGCTATAC
* * *
8110576 CCACCACCTACTCAAGCTCAT
1 CCACCACCCACTCAAACACAT
8110597 CCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAACACAT
* * *
8110618 CCACCACCAACAC-AATAC-T
1 CCACCACCCACTCAAACACAT
* *
8110637 -CACCACCCACTCAAGCCCAT
1 CCACCACCCACTCAAACACAT
* *
8110657 CCACCA-CCACGGC-AATAC-T
1 CCACCACCCAC-TCAAACACAT
* *
8110676 -CGCCACCCATTCAAACACAT
1 CCACCACCCACTCAAACACAT
8110696 CCACCACC
1 CCACCACC
8110704 AATGCAATCC
Statistics
Matches: 79, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
18 15 0.19
19 11 0.14
20 12 0.15
21 41 0.52
ACGTcount: A:0.34, C:0.51, G:0.04, T:0.12
Consensus pattern (21 bp):
CCACCACCCACTCAAACACAT
Found at i:8110711 original size:39 final size:39
Alignment explanation
Indices: 8110600--8110725 Score: 164
Period size: 39 Copynumber: 3.2 Consensus size: 39
8110590 AGCTCATCCA
* *
8110600 CCACCCACTCAAACACATCCACCACCAACACAATACTCA
1 CCACCCACTCAAACACATCCACCACCAACGCAATACTCG
* *
8110639 CCACCCACTCAAGCCCATCCACCACC-ACGGCAATACTCG
1 CCACCCACTCAAACACATCCACCACCAAC-GCAATACTCG
* * * *
8110678 CCACCCATTCAAACACATCCACCACCAATGCAATCCACG
1 CCACCCACTCAAACACATCCACCACCAACGCAATACTCG
8110717 CCACCCACT
1 CCACCCACT
8110726 AAAGGTTGTG
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
38 2 0.03
39 71 0.96
40 1 0.01
ACGTcount: A:0.34, C:0.50, G:0.05, T:0.11
Consensus pattern (39 bp):
CCACCCACTCAAACACATCCACCACCAACGCAATACTCG
Found at i:8110721 original size:138 final size:138
Alignment explanation
Indices: 8110502--8110827 Score: 351
Period size: 138 Copynumber: 2.4 Consensus size: 138
8110492 CAAACACATC
* *
8110502 CACCACCAACTCAAACTCC-TCCACCA--A-GGCAATACCCGCCACCCACTCAAACACATCCACC
1 CACCACCCACTCAAAC-CCATCCACCACCACGGCAATACTCGCCACCCACTCAAACACATCCACC
* * * * *
8110563 GCCAAAGCTATACCCACCACCTACTCAAGCTCATCCACCACCCACTCAAA-CACATCCACCACCA
65 ACCAAAGCAATACCCACCACCCACTAAAGCTCATCAACCACCCACT-AAAGCACATCCACCACCA
8110627 ACACAATACT
129 ACACAATACT
* *
8110637 CACCACCCACTCAAGCCCATCCACCACCACGGCAATACTCGCCACCCATTCAAACACATCCACCA
1 CACCACCCACTCAAACCCATCCACCACCACGGCAATACTCGCCACCCACTCAAACACATCCACCA
* * * ** * * * * *
8110702 CCAATGCAAT-CCACGCCACCCACTAAAGGTTGTGAACCACCTACTAAAGCTCATCCTCCACCGA
66 CCAAAGCAATACC-CACCACCCACTAAAGCTCATCAACCACCCACTAAAGCACATCCACCACCAA
**
8110766 GGCAATACT
130 CACAATACT
* * *
8110775 CACCTCCCACTCAAACTCATCCACCACCATC-CCAATACTCGCCACCCACTCAA
1 CACCACCCACTCAAACCCATCCACCACCA-CGGCAATACTCGCCACCCACTCAA
8110828 GGTCGTACAC
Statistics
Matches: 158, Mismatches: 26, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
134 2 0.01
135 21 0.13
137 6 0.04
138 128 0.81
139 1 0.01
ACGTcount: A:0.33, C:0.47, G:0.06, T:0.13
Consensus pattern (138 bp):
CACCACCCACTCAAACCCATCCACCACCACGGCAATACTCGCCACCCACTCAAACACATCCACCA
CCAAAGCAATACCCACCACCCACTAAAGCTCATCAACCACCCACTAAAGCACATCCACCACCAAC
ACAATACT
Found at i:8110840 original size:21 final size:21
Alignment explanation
Indices: 8110816--8110914 Score: 78
Period size: 21 Copynumber: 4.9 Consensus size: 21
8110806 CCAATACTCG
*
8110816 CCACCCACTCAAGGTCGTACA
1 CCACCCACTCAAGGTCATACA
* * *
8110837 CCACCTACTCAAGCTCATCCA
1 CCACCCACTCAAGGTCATACA
* * *
8110858 CCACCAACGCAA---CATTCA
1 CCACCCACTCAAGGTCATACA
* *
8110876 CCGCCCACTCAAGGTCATACG
1 CCACCCACTCAAGGTCATACA
* *
8110897 CCACCTACTCAAGTTCAT
1 CCACCCACTCAAGGTCAT
8110915 CCATCACCAA
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
18 14 0.23
21 46 0.77
ACGTcount: A:0.29, C:0.43, G:0.10, T:0.17
Consensus pattern (21 bp):
CCACCCACTCAAGGTCATACA
Found at i:8110847 original size:60 final size:60
Alignment explanation
Indices: 8110783--8110961 Score: 214
Period size: 60 Copynumber: 3.0 Consensus size: 60
8110773 CTCACCTCCC
* * * *
8110783 ACTCAAACTCATCCACCACCATCCCAATACTCGCCACCCACTCAAGGTCGTACACCACCT
1 ACTCAAGCTCATCCACCACCAACCCAATACTCGCCGCCCACTCAAGGTCATACACCACCT
* * * * *
8110843 ACTCAAGCTCATCCACCACCAACGCAACATTCACCGCCCACTCAAGGTCATACGCCACCT
1 ACTCAAGCTCATCCACCACCAACCCAATACTCGCCGCCCACTCAAGGTCATACACCACCT
* * ** * * *
8110903 ACTCAAGTTCATCCATCACCAAGTCAATACTTGCCGCCCACTCAAAGTCATCCACCACC
1 ACTCAAGCTCATCCACCACCAACCCAATACTCGCCGCCCACTCAAGGTCATACACCACC
8110962 AATGCAGTAC
Statistics
Matches: 99, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 99 1.00
ACGTcount: A:0.30, C:0.44, G:0.08, T:0.17
Consensus pattern (60 bp):
ACTCAAGCTCATCCACCACCAACCCAATACTCGCCGCCCACTCAAGGTCATACACCACCT
Found at i:8110985 original size:39 final size:40
Alignment explanation
Indices: 8110737--8110987 Score: 98
Period size: 39 Copynumber: 6.3 Consensus size: 40
8110727 AAGGTTGTGA
* * * *
8110737 ACCACCTACT-AAAGCTCATCCTCCACCGAGGCAATACTC
1 ACCACCTACTCAAAGTTCATCCACCACCAAGTCAATACTC
* * * ***
8110776 ACCTCCCACTCAAA-CTCATCCACCACCATCCCAATACTC
1 ACCACCTACTCAAAGTTCATCCACCACCAAGTCAATACTC
* * *
8110815 GCCACCCACTCAAGGTCGTACA-CCACCTACTCAAGCTC-AT-C-C
1 ACCACCTACTCAAAGT--T-CATCCACC-AC-CAAG-TCAATACTC
* * *
8110857 ACCACCAACGCAACA-TTCA-CCGCCCACTCAAGGTC-ATA--C
1 ACCACCTACTCAA-AGTTCATCC-ACCAC-CAA-GTCAATACTC
* * *
8110896 GCCACCTACTC-AAGTTCATCCATCACCAAGTCAATACTT
1 ACCACCTACTCAAAGTTCATCCACCACCAAGTCAATACTC
* * * *
8110935 GCCGCCCACTCAAAG-TCATCCACCACCAA-TGCAGTACTC
1 ACCACCTACTCAAAGTTCATCCACCACCAAGT-CAATACTC
8110974 ACCACCTACTCAAA
1 ACCACCTACTCAAA
8110988 TTATTCCGCA
Statistics
Matches: 160, Mismatches: 33, Indels: 38
0.69 0.14 0.16
Matches are distributed among these distances:
36 3 0.02
37 7 0.04
38 9 0.06
39 103 0.64
40 10 0.06
42 18 0.11
43 5 0.03
44 4 0.03
45 1 0.01
ACGTcount: A:0.31, C:0.43, G:0.08, T:0.18
Consensus pattern (40 bp):
ACCACCTACTCAAAGTTCATCCACCACCAAGTCAATACTC
Found at i:8112751 original size:18 final size:17
Alignment explanation
Indices: 8112718--8112756 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8112708 TTGTATAAAT
8112718 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
8112736 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
8112753 TGTG
1 TGTG
8112757 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:8113009 original size:23 final size:23
Alignment explanation
Indices: 8112982--8113057 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
8112972 AGTGTTATTG
8112982 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
8113005 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8113028 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8113051 ATCAGTG
1 ATCAGTG
8113058 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:8120090 original size:18 final size:17
Alignment explanation
Indices: 8120057--8120095 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8120047 TTGTATAAAT
8120057 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
8120075 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
8120092 TGTG
1 TGTG
8120096 GAAGGAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Done.