Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 201 of 325
Found at i:62894975 original size:23 final size:23
Alignment explanation
Indices: 62894949--62894994 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
62894939 TCTCGACAAG
62894949 TGTTCATGTACAAAAATCTACTA
1 TGTTCATGTACAAAAATCTACTA
*
62894972 TGTTCATGTACAAACATCTACTA
1 TGTTCATGTACAAAAATCTACTA
62894995 ATCTATCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.35
Consensus pattern (23 bp):
TGTTCATGTACAAAAATCTACTA
Found at i:62895925 original size:30 final size:30
Alignment explanation
Indices: 62895868--62895925 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
62895858 TTTTTGAATA
* **
62895868 TAGGGGTAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
62895898 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
62895926 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:62903595 original size:30 final size:30
Alignment explanation
Indices: 62903538--62903595 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
62903528 TTTTTGAATA
* **
62903538 TAGGGGTAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
62903568 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
62903596 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:62903998 original size:47 final size:49
Alignment explanation
Indices: 62903938--62904206 Score: 263
Period size: 47 Copynumber: 5.7 Consensus size: 49
62903928 TGTGTGAGTT
62903938 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTC-ATTAGGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTAGGAGAGCC
* * * * * * *
62903984 AGTGTAAGACCATGTCTGGGACATAGCATCGGCATTGA-GACGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTAGGAGAGCC
* * *
62904032 AGTGTAAGA-CATGTCTGGGACAT-GCTTCGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTA-GGAGAGCC
* * ** * *
62904078 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTAGGAGAGCC
* * **
62904127 AGTGTAAGACCATATCTGGGACATGGCAT-TGATTCGA-T-GGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTAGGA-GAGCC
62904174 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
62904207 ATTATACCCT
Statistics
Matches: 181, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
46 34 0.19
47 75 0.41
48 41 0.23
49 31 0.17
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTAGGAGAGCC
Found at i:62907637 original size:33 final size:34
Alignment explanation
Indices: 62907580--62907643 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
62907570 TATTTCCACA
*
62907580 AGATACCCTTTCATAGGGACATATT-TTTTAATG
1 AGATACCCTTTCATAGAGACATATTGTTTTAATG
*
62907613 AGATACCCTTTCATA-AGATTATATTGTTTTA
1 AGATACCCTTTCATAGAGA-CATATTGTTTTA
62907644 CAAAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 2 0.07
33 20 0.74
34 5 0.19
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.42
Consensus pattern (34 bp):
AGATACCCTTTCATAGAGACATATTGTTTTAATG
Found at i:62910510 original size:22 final size:21
Alignment explanation
Indices: 62910476--62910518 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
62910466 CAAAAATTAC
*
62910476 AAAAAAATTTAAAATATTTAT
1 AAAAAAATCTAAAATATTTAT
*
62910497 AAAAAGAATCTAAAATTTTTAT
1 AAAAA-AATCTAAAATATTTAT
62910519 TTTTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
AAAAAAATCTAAAATATTTAT
Found at i:62910537 original size:18 final size:18
Alignment explanation
Indices: 62910508--62910547 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
62910498 AAAAGAATCT
62910508 AAAATTTTTA-TTTTTAA
1 AAAATTTTTATTTTTTAA
62910525 AAAATTATTTATTTTTTAA
1 AAAATT-TTTATTTTTTAA
62910544 AAAA
1 AAAA
62910548 CCTAAAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 6 0.29
18 4 0.19
19 11 0.52
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AAAATTTTTATTTTTTAA
Found at i:62918691 original size:46 final size:49
Alignment explanation
Indices: 62918588--62918706 Score: 145
Period size: 46 Copynumber: 2.5 Consensus size: 49
62918578 CTTCGACATT
** * *
62918588 GACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAATATG
1 GACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATCTAATATG
* *
62918638 GGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATAT-T-TGATATG
1 GACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAATATG
*
62918684 GACTTACATGGCTCATTTCTGTC
1 GACTTACATGGCTCATTCCTGTC
62918707 CTGTCCTGTC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 27 0.44
47 1 0.02
48 6 0.10
50 27 0.44
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (49 bp):
GACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAATATG
Found at i:62919973 original size:16 final size:18
Alignment explanation
Indices: 62919946--62919978 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
62919936 ATTTAATTCT
62919946 TATAAGTTTTTA-ATAAA
1 TATAAGTTTTTACATAAA
62919963 TATAA-TTTTTACATAA
1 TATAAGTTTTTACATAA
62919979 TACTTTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (18 bp):
TATAAGTTTTTACATAAA
Found at i:62921127 original size:9 final size:9
Alignment explanation
Indices: 62921104--62921147 Score: 72
Period size: 9 Copynumber: 4.9 Consensus size: 9
62921094 TAGTTTTATC
62921104 TATTTATTA
1 TATTTATTA
62921113 -ATTTATTA
1 TATTTATTA
62921121 TATTTATTA
1 TATTTATTA
62921130 TATTTATTA
1 TATTTATTA
62921139 TATTATATT
1 TATT-TATT
62921148 TTAATAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.24
9 21 0.64
10 4 0.12
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TATTTATTA
Found at i:62921133 original size:5 final size:5
Alignment explanation
Indices: 62921104--62921147 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 5
62921094 TAGTTTTATC
62921104 TATT- TATTA -ATT- TATTA TATT- TATTA TATT- TATTA TATTA TATT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATT
62921148 TTAATAATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
4 18 0.51
5 17 0.49
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (5 bp):
TATTA
Found at i:62921142 original size:14 final size:14
Alignment explanation
Indices: 62921104--62921148 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
62921094 TAGTTTTATC
62921104 TATTTATTA-ATT-
1 TATTTATTATATTA
62921116 TATTATATT-TATTA
1 TATT-TATTATATTA
62921130 TATTTATTATATTA
1 TATTTATTATATTA
62921144 TATTT
1 TATTT
62921149 TAATAATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.14
13 11 0.38
14 14 0.48
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTTATTATATTA
Found at i:62921157 original size:23 final size:21
Alignment explanation
Indices: 62921104--62921157 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 21
62921094 TAGTTTTATC
*
62921104 TATTTATTAATTTATTATATT
1 TATTTAATAATTTATTATATT
62921125 TA-TT-AT-ATTTATTATATT
1 TATTTAATAATTTATTATATT
62921143 ATATTTTAATAATTT
1 -TA-TTTAATAATTT
62921158 CTAGTTTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
18 12 0.44
19 3 0.11
20 2 0.07
21 4 0.15
22 2 0.07
23 4 0.15
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TATTTAATAATTTATTATATT
Found at i:62921568 original size:22 final size:23
Alignment explanation
Indices: 62921527--62921575 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
62921517 AATTATTTAA
* *
62921527 AAATGTTTTGTTCAAAAAAATGT
1 AAATGTATTGTTCAAAAAAAAGT
62921550 AAATGTATTGTT-AAAAAAAAGT
1 AAATGTATTGTTCAAAAAAAAGT
62921572 AAAT
1 AAAT
62921576 ATAAAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.51, C:0.02, G:0.12, T:0.35
Consensus pattern (23 bp):
AAATGTATTGTTCAAAAAAAAGT
Found at i:62926214 original size:13 final size:13
Alignment explanation
Indices: 62926196--62926274 Score: 89
Period size: 13 Copynumber: 6.5 Consensus size: 13
62926186 TAGATTTTTT
62926196 CTAAATATTATCA
1 CTAAATATTATCA
62926209 CTAAATA--ATC-
1 CTAAATATTATCA
62926219 CTAAATATTATCA
1 CTAAATATTATCA
*
62926232 CTAAATATTGTCA
1 CTAAATATTATCA
*
62926245 CTAAATA--AT-T
1 CTAAATATTATCA
*
62926255 CTAAATATTTTCA
1 CTAAATATTATCA
62926268 CTAAATA
1 CTAAATA
62926275 AATCAAATTT
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
10 14 0.25
11 4 0.07
12 4 0.07
13 33 0.60
ACGTcount: A:0.46, C:0.15, G:0.01, T:0.38
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:62926236 original size:36 final size:36
Alignment explanation
Indices: 62926196--62926274 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
62926186 TAGATTTTTT
62926196 CTAAATATTATCACTAAATAATCCTAAATATTATCA
1 CTAAATATTATCACTAAATAATCCTAAATATTATCA
* * *
62926232 CTAAATATTGTCACTAAATAATTCTAAATATTTTCA
1 CTAAATATTATCACTAAATAATCCTAAATATTATCA
62926268 CTAAATA
1 CTAAATA
62926275 AATCAAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.46, C:0.15, G:0.01, T:0.38
Consensus pattern (36 bp):
CTAAATATTATCACTAAATAATCCTAAATATTATCA
Found at i:62926258 original size:23 final size:23
Alignment explanation
Indices: 62926232--62926275 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
62926222 AATATTATCA
62926232 CTAAATATTGTCACTAAATAATT
1 CTAAATATTGTCACTAAATAATT
*
62926255 CTAAATATTTTCACTAAATAA
1 CTAAATATTGTCACTAAATAA
62926276 ATCAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (23 bp):
CTAAATATTGTCACTAAATAATT
Found at i:62926293 original size:14 final size:14
Alignment explanation
Indices: 62926274--62926301 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
62926264 TTCACTAAAT
62926274 AAATCAAATTTTAA
1 AAATCAAATTTTAA
62926288 AAATCAAATTTTAA
1 AAATCAAATTTTAA
62926302 CTAGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATCAAATTTTAA
Found at i:62930620 original size:49 final size:49
Alignment explanation
Indices: 62930560--62930747 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
62930550 TAGACAAAGC
* *
62930560 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
62930609 TATCCGATACACGTAGTAGCCTGCATTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
** *
62930660 TATTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
62930709 TATCCGGTACACATAGTAGCCTACACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
62930748 CGTGACCTCA
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 74 0.64
50 6 0.05
51 36 0.31
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:62930700 original size:100 final size:100
Alignment explanation
Indices: 62930565--62930752 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
62930555 AAAGCTATCT
*
62930565 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACTATCCGATACACGTAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACTATCCGATACACATAGTAGCC
* *
62930630 TGCATTTAGTACTACACACGTGATCGAAGTTATTG
66 TACACTTAGTACTACACACGTGATCGAAGTTATTG
* * *
62930665 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACTATCCGATACACATAGTAGCC
62930730 TACACTTAGTACTACACACGTGA
66 TACACTTAGTACTACACACGTGA
62930753 CCTCACAATA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACTATCCGATACACATAGTAGCC
TACACTTAGTACTACACACGTGATCGAAGTTATTG
Found at i:62931054 original size:27 final size:27
Alignment explanation
Indices: 62930991--62931054 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
62930981 GTGTAGCAAT
* * * *
62930991 TCATGCAATCCATGTAATAGTAATTTA
1 TCATTCAATTCATGTAACAATAATTTA
* *
62931018 ACATTCAATTCATGTAACAATAATTTG
1 TCATTCAATTCATGTAACAATAATTTA
62931045 TCATTCAATT
1 TCATTCAATT
62931055 TTACATGACA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.39
Consensus pattern (27 bp):
TCATTCAATTCATGTAACAATAATTTA
Found at i:62932359 original size:24 final size:26
Alignment explanation
Indices: 62932330--62932378 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
62932320 CTTGTTTTAA
* *
62932330 TATTTG-TTT-TTATGTTTTTAAATG
1 TATTTGATTTATTATATTTTAAAATG
62932354 TATTTGATTTATTATATTTTAAAAT
1 TATTTGATTTATTATATTTTAAAAT
62932379 TTTTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (26 bp):
TATTTGATTTATTATATTTTAAAATG
Found at i:62938317 original size:13 final size:13
Alignment explanation
Indices: 62938299--62938340 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
62938289 AGATTTTTCA
62938299 TAAATATTATCAC
1 TAAATATTATCAC
62938312 TAAATA--ATC-C
1 TAAATATTATCAC
*
62938322 TAAATATTATCAT
1 TAAATATTATCAC
62938335 TAAATA
1 TAAATA
62938341 ATTCAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
10 7 0.28
11 3 0.12
12 3 0.12
13 12 0.48
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:62938329 original size:23 final size:23
Alignment explanation
Indices: 62938299--62938342 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
62938289 AGATTTTTCA
62938299 TAAATATTATCACTAAATAATCC
1 TAAATATTATCACTAAATAATCC
*
62938322 TAAATATTATCATTAAATAAT
1 TAAATATTATCACTAAATAAT
62938343 TCAAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATCC
Found at i:62942054 original size:32 final size:33
Alignment explanation
Indices: 62942015--62942259 Score: 185
Period size: 32 Copynumber: 7.5 Consensus size: 33
62942005 GTGCACATTC
*
62942015 CCTTTTCAAGTGGTACACACAAAGT-TACATAC
1 CCTTTTCAAGTGGTACACACAAAGTATACATAT
* * ** * *
62942047 CCTTTTCAATTTGTACACACAAAGTGCAGATAA
1 CCTTTTCAAGTGGTACACACAAAGTATACATAT
* * * * *
62942080 CCTTTTCAAGT-GTACACGCATAGTGTACTTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACATAT
* * *
62942112 CCTTTTCAAGTGGTATACACAAAGTATACTTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACATAT
* * *
62942145 CCTTTTCAAGTGGCATA-AAACAAAGTATACCTTT
1 CCTTTTCAAGTGG--TACACACAAAGTATACATAT
* ** *
62942179 CCTTTTCATA-TGGTATACACAAAGTATACCCAA
1 CCTTTTCA-AGTGGTACACACAAAGTATACATAT
* * * *
62942212 CCTTTCCAAGT-GTACGCACAAAGTGTACATAG
1 CCTTTTCAAGTGGTACACACAAAGTATACATAT
*
62942244 CCTTTTCAAGTTGTAC
1 CCTTTTCAAGTGGTAC
62942260 CCTTTCGGGT
Statistics
Matches: 174, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
32 76 0.44
33 69 0.40
34 26 0.15
35 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTATACATAT
Found at i:62942074 original size:65 final size:66
Alignment explanation
Indices: 62942005--62942259 Score: 178
Period size: 65 Copynumber: 3.9 Consensus size: 66
62941995 TACATCTGAG
* * *
62942005 GTGCACATTCCCTTTTCAAGTGGTACACACAAAGT-TACATACCCTTTTCAATTTGTACACACAA
1 GTGCACATTACCTTTTCAAGTGGTACACACAAAGTGTACATACCCTTTTCAAGTGGTACACACAA
62942069 A
66 A
* * * * * ** *
62942070 GTGCAGATAACCTTTTCAAGT-GTACACGCATAGTGTACTTTTCCTTTTCAAGTGGTATACACAA
1 GTGCACATTACCTTTTCAAGTGGTACACACAAAGTGTACATACCCTTTTCAAGTGGTACACACAA
62942134 A
66 A
** * * * * * ** *
62942135 GTATACTTTTCCTTTTCAAGTGGCATA-AAACAAAGTATACCTTTCCTTTTCATA-TGGTATACA
1 GTGCACATTACCTTTTCAAGTGG--TACACACAAAGTGTACATACCCTTTTCA-AGTGGTACACA
62942198 CAAA
63 CAAA
** *** * * * *
62942202 GTATACCCAACCTTTCCAAGT-GTACGCACAAAGTGTACATAGCCTTTTCAAGTTGTAC
1 GTGCACATTACCTTTTCAAGTGGTACACACAAAGTGTACATACCCTTTTCAAGTGGTAC
62942260 CCTTTCGGGT
Statistics
Matches: 148, Mismatches: 35, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
64 14 0.09
65 80 0.54
66 2 0.01
67 49 0.33
68 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (66 bp):
GTGCACATTACCTTTTCAAGTGGTACACACAAAGTGTACATACCCTTTTCAAGTGGTACACACAA
A
Found at i:62942173 original size:34 final size:33
Alignment explanation
Indices: 62942015--62942207 Score: 167
Period size: 33 Copynumber: 5.9 Consensus size: 33
62942005 GTGCACATTC
* * **
62942015 CCTTTTCAAGTGGTACACACAAAGT-TACATAC
1 CCTTTTCAAGTGGTATACACAAAGTATACTTTT
* * * ** ** **
62942047 CCTTTTCAATTTGTACACACAAAGTGCAGATAA
1 CCTTTTCAAGTGGTATACACAAAGTATACTTTT
* * * *
62942080 CCTTTTCAAGT-GTACACGCATAGTGTACTTTT
1 CCTTTTCAAGTGGTATACACAAAGTATACTTTT
62942112 CCTTTTCAAGTGGTATACACAAAGTATACTTTT
1 CCTTTTCAAGTGGTATACACAAAGTATACTTTT
* * *
62942145 CCTTTTCAAGTGGCATAAAACAAAGTATACCTTT
1 CCTTTTCAAGTGGTAT-ACACAAAGTATACTTTT
62942179 CCTTTTCATA-TGGTATACACAAAGTATAC
1 CCTTTTCA-AGTGGTATACACAAAGTATAC
62942208 CCAACCTTTC
Statistics
Matches: 135, Mismatches: 22, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
32 48 0.36
33 58 0.43
34 28 0.21
35 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34
Consensus pattern (33 bp):
CCTTTTCAAGTGGTATACACAAAGTATACTTTT
Found at i:62942954 original size:21 final size:22
Alignment explanation
Indices: 62942908--62942950 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
62942898 TGTAAAAGTG
*
62942908 ATTTCTCTATCAATAACCTTTC
1 ATTTCTCTATCAATAAACTTTC
62942930 ATTTC-CTATC-ATAAACTTTC
1 ATTTCTCTATCAATAAACTTTC
62942950 A
1 A
62942951 ATTTACAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 5 0.25
22 5 0.25
ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTTCTCTATCAATAAACTTTC
Found at i:62944008 original size:56 final size:56
Alignment explanation
Indices: 62943922--62944041 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
62943912 ACAAGGGATG
62943922 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
62943978 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
62944034 ATGGGCAA
1 ATGGGCAA
62944042 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:62945272 original size:39 final size:40
Alignment explanation
Indices: 62945173--62945395 Score: 253
Period size: 40 Copynumber: 5.6 Consensus size: 40
62945163 CGAATGATGT
* * *
62945173 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
* * * *
62945212 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
62945253 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
62945291 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-A
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
62945330 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-A
*
62945371 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
62945396 AATGAGTAGC
Statistics
Matches: 159, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
38 9 0.06
39 52 0.33
40 87 0.55
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:62945313 original size:78 final size:80
Alignment explanation
Indices: 62945172--62945395 Score: 285
Period size: 78 Copynumber: 2.8 Consensus size: 80
62945162 TCGAATGATG
* * * * * * *
62945172 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCAGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
62945235 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
62945252 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AACCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
*
62945315 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
62945330 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
62945395 G
66 G
62945396 AATGAGTAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
77 1 0.01
78 43 0.34
79 40 0.32
80 42 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:62945417 original size:79 final size:79
Alignment explanation
Indices: 62945225--62945428 Score: 243
Period size: 79 Copynumber: 2.6 Consensus size: 79
62945215 AGACTAAGAT
** * * *
62945225 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
*
62945289 AACCGGGTTAAGTC
66 AACCGGGCTAAGTC
** *
62945303 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
*
62945368 TAACCGGGCTATGTC
66 -AACCGGGCTAAGTC
* * * *
62945383 CCGAAGGCATTTGAATGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
62945429 TACGTGATTT
Statistics
Matches: 111, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 35 0.32
79 41 0.37
80 35 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
AACCGGGCTAAGTC
Found at i:62952284 original size:66 final size:65
Alignment explanation
Indices: 62952205--62952329 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 65
62952195 GGACCTTTCC
* * **
62952205 TTTTCTAATTGTACAC-CTGAGGTGCACATTCCCTTTTCAAGTGGTACACACGA-AGTGTACATA
1 TTTTCTAATTGTACACAC-AAAGTGCACATAACCTTTTCAAGT-GTACACAC-ATAGTGTACATA
62952268 CCT
63 CCT
*
62952271 TTTTC-AATTTGTACACACAAAGTGCAGATAACCTTTTCAAGTGTACACACATAGTGTAC
1 TTTTCTAA-TTGTACACACAAAGTGCACATAACCTTTTCAAGTGTACACACATAGTGTAC
62952330 CTTTCCTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
64 1 0.02
65 17 0.33
66 32 0.63
67 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (65 bp):
TTTTCTAATTGTACACACAAAGTGCACATAACCTTTTCAAGTGTACACACATAGTGTACATACCT
Found at i:62952321 original size:32 final size:32
Alignment explanation
Indices: 62952236--62952480 Score: 167
Period size: 33 Copynumber: 7.5 Consensus size: 32
62952226 GTGCACATTC
*
62952236 CCTTTTCAAGTGGTACACACGAAGTGTACATA
1 CCTTTTCAAGTGGTACACACAAAGTGTACATA
* * * *
62952268 CCTTTTTCAATTTGTACACACAAAGTGCAGATAA
1 CC-TTTTCAAGTGGTACACACAAAGTGTACAT-A
* * *
62952302 CCTTTTCAAGT-GTACACACATAGTGTACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTGTA-CATA
* * *
62952334 CCTTTTCAAGTGGTATACACAAAGTATACATTT
1 CCTTTTCAAGTGGTACACACAAAGTGTACA-TA
* * * * * *
62952367 TCTTTTCATA-TTGTATACACAAAGTATACCTTT
1 CCTTTTCA-AGTGGTACACACAAAGTGTA-CATA
* *
62952400 CCTTTTCATA-TGGTATACACAAAGTATACCCA-A
1 CCTTTTCA-AGTGGTACACACAAAGTGTA--CATA
*
62952433 CCTTTCCAAGT-GTACACACAAAGTGTACATA
1 CCTTTTCAAGTGGTACACACAAAGTGTACATA
* *
62952464 GCCTTTTAAAGTTGTAC
1 -CCTTTTCAAGTGGTAC
62952481 CCTTTCAGGA
Statistics
Matches: 174, Mismatches: 27, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
30 2 0.01
31 1 0.01
32 52 0.30
33 112 0.64
34 7 0.04
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (32 bp):
CCTTTTCAAGTGGTACACACAAAGTGTACATA
Found at i:62952338 original size:66 final size:65
Alignment explanation
Indices: 62952236--62952460 Score: 229
Period size: 66 Copynumber: 3.4 Consensus size: 65
62952226 GTGCACATTC
* * * * * ** *
62952236 CCTTTTCAAGTGGTACACACGAAGTGTA-CATACCTTTTTCAATTTGTACACACAAAGTGCAGAT
1 CCTTTTCAAGT-GTACACACAAAGTGTACCTTTCC-TTTTCAATTGGTATACACAAAGTATACAT
62952300 AA
64 AA
* * **
62952302 CCTTTTCAAGTGTACACACATAGTGTACCTTTCCTTTTCAAGTGGTATACACAAAGTATACATTT
1 CCTTTTCAAGTGTACACACAAAGTGTACCTTTCCTTTTCAATTGGTATACACAAAGTATACATAA
* * * * **
62952367 TCTTTTCATATTGTATACACAAAGTATACCTTTCCTTTTC-ATATGGTATACACAAAGTATACCC
1 CCTTTTCA-AGTGTACACACAAAGTGTACCTTTCCTTTTCAAT-TGGTATACACAAAGTATACAT
62952431 AA
64 AA
*
62952433 CCTTTCCAAGTGTACACACAAAGTGTAC
1 CCTTTTCAAGTGTACACACAAAGTGTAC
62952461 ATAGCCTTTT
Statistics
Matches: 129, Mismatches: 27, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
65 62 0.48
66 67 0.52
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (65 bp):
CCTTTTCAAGTGTACACACAAAGTGTACCTTTCCTTTTCAATTGGTATACACAAAGTATACATAA
Found at i:62953420 original size:47 final size:47
Alignment explanation
Indices: 62953359--62953453 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
62953349 TTTTATGAAG
62953359 AAGAAGATGATATAAAATAGGTTTAATTCTATTTAATCATTTATCAT
1 AAGAAGATGATATAAAATAGGTTTAATTCTATTTAATCATTTATCAT
*
62953406 AAGAAGATGATATAAAATGGGTTTAATTCTATTTAATCATTTATCAT
1 AAGAAGATGATATAAAATAGGTTTAATTCTATTTAATCATTTATCAT
62953453 A
1 A
62953454 CTTTATTAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.40
Consensus pattern (47 bp):
AAGAAGATGATATAAAATAGGTTTAATTCTATTTAATCATTTATCAT
Found at i:62957145 original size:50 final size:50
Alignment explanation
Indices: 62957085--62957276 Score: 303
Period size: 50 Copynumber: 3.8 Consensus size: 50
62957075 AGCTCTCGGA
*
62957085 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGG
* * * * * *
62957135 TACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCACCTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGG
*
62957185 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGATCTAACAATCTGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGG
*
62957235 TACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
1 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
62957277 AACCGTCCTA
Statistics
Matches: 126, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 126 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGG
Found at i:62957256 original size:100 final size:100
Alignment explanation
Indices: 62957083--62957316 Score: 353
Period size: 100 Copynumber: 2.3 Consensus size: 100
62957073 AAAGCTCTCG
62957083 GATACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GATACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
62957148 CTACACTTAGTACTACACACGTGACCTAACCACCT
66 CTACACTTAGTACTACACACGTGACCTAACCACCT
* *
62957183 GATACACGTAGTAGCCTGCACTTAGTACTACACATGCGATCTAACAATCTGGTACACGTAGTAGC
1 GATACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
* * *
62957248 CTGCACTTAGTACTACACATGTGACCTAAAACCGTCCT
66 CTACACTTAGTACTACACACGTGACCT--AACC-ACCT
* * * *
62957286 -AAACACATAATAGCCTGTACATAGTACTACA
1 GATACACATAGTAGCCTGCACTTAGTACTACA
62957317 TATGTGTCCT
Statistics
Matches: 121, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
100 88 0.73
102 30 0.25
103 3 0.02
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (100 bp):
GATACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
CTACACTTAGTACTACACACGTGACCTAACCACCT
Found at i:62959745 original size:43 final size:43
Alignment explanation
Indices: 62959686--62960045 Score: 245
Period size: 43 Copynumber: 8.7 Consensus size: 43
62959676 TTTGAGAAAG
* * *
62959686 CGCCGCTAAAGAACGTGACCTTTAGCGGTGCCTTCCACACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTTCATACAAA
** * * * * ** *
62959729 CATCGCTAAAGGACGTGACCTTTAGAGG-CCCTTTTTTAAAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTTCATACAAA
*
62959771 CGCCGCTAAAGAACATGACCTTTAGCGGTGCTTTTCATACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTTCATACAAA
* * *
62959814 CGCCGCTAAAGAACATGACCTTTAGTGGCGCTTTTC-T-CAAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTTCATAC-AAA
* *
62959856 TCGCCGCTAAAGAACAT-AACTTATAG-TG-GCACTTT--T-----
1 -CGCCGCTAAAGAACATGACCTT-TAGCGGTGC-CTTTCATACAAA
* * **
62959892 --CTGCTAAAGAA-ATGACCTTTAGCGGCGGTTTTC-T-CGAAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTTCATAC--AAA
* * * *
62959932 CGCCGCTAAAGAACATGACATTTAGCGGCGCTTTTC-TAAAAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTTCAT-ACAAA
* * * * *
62959975 TGACACTAAAGAACGTGACCTTTAGCGGTGCTTTTCATACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTTCATACAAA
62960018 CGCCGCTAAAGAACATGACCTTTAGCGG
1 CGCCGCTAAAGAACATGACCTTTAGCGG
62960046 AGCTTTCCTA
Statistics
Matches: 251, Mismatches: 45, Indels: 42
0.74 0.13 0.12
Matches are distributed among these distances:
32 5 0.02
33 18 0.07
34 2 0.01
41 4 0.02
42 53 0.21
43 168 0.67
44 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTTCATACAAA
Found at i:62959784 original size:85 final size:86
Alignment explanation
Indices: 62959686--62960045 Score: 259
Period size: 85 Copynumber: 4.3 Consensus size: 86
62959676 TTTGAGAAAG
* * * *
62959686 CGCCGCTAAAGAACGTGACCTTTAGCGGTGCCTTCCACACAAACATCGCTAAAGGACGTGACCTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTCCACACAAACACCGCTAAAGAACATGACCTT
*
62959751 TAGAGGCCCTTTT-TTAAAAA
66 TAGAGGCCCTTTTCTCAAAAA
* * * *
62959771 CGCCGCTAAAGAACATGACCTTTAGCGGTGCTTTTCATACAAACGCCGCTAAAGAACATGACCTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTCCACACAAACACCGCTAAAGAACATGACCTT
* * *
62959836 TAGTGGCGCTTTTCTCAAAAT
66 TAGAGGCCCTTTTCTCAAAAA
* * ** *
62959857 CGCCGCTAAAGAACAT-AACTTATAG-TG-GCACTT---------TTCTGCTAAAGAA-ATGACC
1 CGCCGCTAAAGAACATGACCTT-TAGCGGTGC-CTTCCACACAAACACCGCTAAAGAACATGACC
* ** *
62959909 TTTAGCGGCGGTTTTCTCGAAAA
64 TTTAGAGGCCCTTTTCTCAAAAA
* * * * * * * *
62959932 CGCCGCTAAAGAACATGACATTTAGCGGCGCTTTTCTA-AAAAATGA-CACTAAAGAACGTGACC
1 CGCCGCTAAAGAACATGACCTTTAGCGGTGC-CTTCCACACAAA-CACCGCTAAAGAACATGACC
* ** *
62959995 TTTAGCGGTGCTTTTCAT-ACAAA
64 TTTAGAGGCCCTTTTC-TCAAAAA
62960018 CGCCGCTAAAGAACATGACCTTTAGCGG
1 CGCCGCTAAAGAACATGACCTTTAGCGG
62960046 AGCTTTCCTA
Statistics
Matches: 221, Mismatches: 37, Indels: 33
0.76 0.13 0.11
Matches are distributed among these distances:
75 44 0.20
76 14 0.06
77 4 0.02
84 2 0.01
85 83 0.38
86 73 0.33
87 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (86 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGTGCCTTCCACACAAACACCGCTAAAGAACATGACCTT
TAGAGGCCCTTTTCTCAAAAA
Found at i:62959790 original size:42 final size:43
Alignment explanation
Indices: 62959650--62959872 Score: 191
Period size: 43 Copynumber: 5.2 Consensus size: 43
62959640 AAAACACCAT
* * * * *
62959650 TAAAGAACATGACTTTTAGTGACG-TTTT-TGAGAAAGCGCCGC
1 TAAAGAACATGACCTTTAGAGGCGCTTTTCTTA-AAAACGCCGC
* * * * * ** * **
62959692 TAAAGAACGTGACCTTTAGCGGTGCCTTCCACACAAACATCGC
1 TAAAGAACATGACCTTTAGAGGCGCTTTTCTTAAAAACGCCGC
* * *
62959735 TAAAGGACGTGACCTTTAGAGGCCCTTTT-TTAAAAACGCCGC
1 TAAAGAACATGACCTTTAGAGGCGCTTTTCTTAAAAACGCCGC
* * * *
62959777 TAAAGAACATGACCTTTAGCGGTGCTTTTCATACAAACGCCGC
1 TAAAGAACATGACCTTTAGAGGCGCTTTTCTTAAAAACGCCGC
* * *
62959820 TAAAGAACATGACCTTTAGTGGCGCTTTTCTCAAAATCGCCGC
1 TAAAGAACATGACCTTTAGAGGCGCTTTTCTTAAAAACGCCGC
62959863 TAAAGAACAT
1 TAAAGAACAT
62959873 AACTTATAGT
Statistics
Matches: 141, Mismatches: 37, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
42 51 0.36
43 89 0.63
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (43 bp):
TAAAGAACATGACCTTTAGAGGCGCTTTTCTTAAAAACGCCGC
Found at i:62959966 original size:75 final size:76
Alignment explanation
Indices: 62959818--62959968 Score: 218
Period size: 75 Copynumber: 2.0 Consensus size: 76
62959808 TACAAACGCC
* *
62959818 GCTAAAGAACATGACCTTTAGTGGCGCTTTTCTCAAAATCGCCGCTAAAGAACATAACTTATAGT
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCTCAAAATCGCCGCTAAAGAACATAACTTATAGC
62959883 GGCACTTTTCT
66 GGCACTTTTCT
* *
62959894 GCTAAAGAA-ATGACCTTTAGCGGCGGTTTTCTCGAAAA-CGCCGCTAAAGAACATGACATT-TA
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCTC-AAAATCGCCGCTAAAGAACATAAC-TTATA
*
62959956 GCGGCGCTTTTCT
64 GCGGCACTTTTCT
62959969 AAAAAATGAC
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
75 53 0.78
76 15 0.22
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (76 bp):
GCTAAAGAACATGACCTTTAGCGGCGCTTTTCTCAAAATCGCCGCTAAAGAACATAACTTATAGC
GGCACTTTTCT
Found at i:62960010 original size:118 final size:119
Alignment explanation
Indices: 62959775--62959988 Score: 301
Period size: 118 Copynumber: 1.8 Consensus size: 119
62959765 TAAAAACGCC
* * *
62959775 GCTAAAGAACATGACCTTTAGCGGTGCTTTTCATACAAACGCCGCTAAAGAACATGACCTTTAGT
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCATACAAACGCCGCTAAAGAACATGACATTTAGC
* * * *
62959840 GGCGCTTTTCTCAAAATCGCCGCTAAAGAACATAACTTATAGTGGCACTTTTCT
66 GGCGCTTTTCTAAAAATCGACACTAAAGAACATAACTTATAGCGGCACTTTTCT
*
62959894 GCTAAAGAA-ATGACCTTTAGCGGCGGTTTTC-T-CGAAAACGCCGCTAAAGAACATGACATTTA
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCATAC--AAACGCCGCTAAAGAACATGACATTTA
62959956 GCGGCGCTTTTCTAAAAAAT-GACACTAAAGAAC
64 GCGGCGCTTTTCT-AAAAATCGACACTAAAGAAC
62959989 GTGACCTTTA
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
116 1 0.01
117 1 0.01
118 69 0.81
119 14 0.16
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (119 bp):
GCTAAAGAACATGACCTTTAGCGGCGCTTTTCATACAAACGCCGCTAAAGAACATGACATTTAGC
GGCGCTTTTCTAAAAATCGACACTAAAGAACATAACTTATAGCGGCACTTTTCT
Found at i:62960051 original size:86 final size:84
Alignment explanation
Indices: 62959895--62960069 Score: 244
Period size: 86 Copynumber: 2.0 Consensus size: 84
62959885 CACTTTTCTG
*
62959895 CTAAAGAAATGACCTTTAGCGGCGGTTTTCTCGAAAACGCCGCTAAAGAACATGACATTTAGCGG
1 CTAAAGAAATGACCTTTAGCGGCGCTTTTCTC-AAAACGCCGCTAAAGAACATGACATTTAGCGG
* *
62959960 CGCTTTTCTAAAAAATGACA
65 AGCTTTCCTAAAAAATGACA
* * *
62959980 CTAAAGAACGTGACCTTTAGCGGTGCTTTTCAT-ACAAACGCCGCTAAAGAACATGACCTTTAGC
1 CTAAAGAA-ATGACCTTTAGCGGCGCTTTTC-TCA-AAACGCCGCTAAAGAACATGACATTTAGC
*
62960044 GGAGCTTTCCTAAAAAATGCCA
63 GGAGCTTTCCTAAAAAATGACA
62960066 CTAA
1 CTAA
62960070 TTTTAGTAGA
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
85 9 0.11
86 70 0.88
87 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (84 bp):
CTAAAGAAATGACCTTTAGCGGCGCTTTTCTCAAAACGCCGCTAAAGAACATGACATTTAGCGGA
GCTTTCCTAAAAAATGACA
Found at i:62963456 original size:27 final size:27
Alignment explanation
Indices: 62963421--62963486 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
62963411 TAGTTGAACT
*
62963421 ATGGCAAAGTGATAAAGTGTGTCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
* *
62963448 ATGGTAAAGTGATAAAGTGTGCCAAAT
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
62963475 ATGGCAAAGTGA
1 ATGGCAAAGTGA
62963487 AATGTGACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.41, C:0.09, G:0.27, T:0.23
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:62966111 original size:50 final size:50
Alignment explanation
Indices: 62966055--62966252 Score: 193
Period size: 50 Copynumber: 4.0 Consensus size: 50
62966045 CAATTATAGA
* * * * *
62966055 AAATCAAATATAATATCACATATGTGCATACCTATATGGTCGAATATGC-
1 AAATCAAATATAACATCAAATATGTACATACCTATATGGCCGAATATACG
* * * *
62966104 AAGATCAAATTTAACATTAAATATGTACTTACTTATATGGCCGAATATACG
1 AA-ATCAAATATAACATCAAATATGTACATACCTATATGGCCGAATATACG
* * * * * *
62966155 AATTCAAATATAATATCAAATTTGTGCATACCT-TCATGGCCGAATATTCT
1 AAATCAAATATAACATCAAATATGTACATACCTAT-ATGGCCGAATATACG
* * * *
62966205 AAATCCAATATAACATCACATACGTACATACCTATGTGGCCGAATATA
1 AAATCAAATATAACATCAAATATGTACATACCTATATGGCCGAATATA
62966253 TGCAAGGTCA
Statistics
Matches: 117, Mismatches: 28, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
49 3 0.03
50 111 0.95
51 3 0.03
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (50 bp):
AAATCAAATATAACATCAAATATGTACATACCTATATGGCCGAATATACG
Found at i:62966245 original size:100 final size:100
Alignment explanation
Indices: 62966058--62966252 Score: 250
Period size: 100 Copynumber: 1.9 Consensus size: 100
62966048 TTATAGAAAA
* * * *
62966058 TCAAATATAATATCACATATGTGCATACCTATATGGTCGAATATGCAAGATCAAATTTAACATTA
1 TCAAATATAATATCAAATATGTGCATACCTATATGGCCGAATATGCAAGATCAAATATAACATCA
* * *
62966123 AATATGTACTTACTTATATGGCCGAATATACGAAT
66 AATACGTACATACCTATATGGCCGAATATACGAAT
* * *
62966158 TCAAATATAATATCAAATTTGTGCATACCT-TCATGGCCGAATATTCTAA-ATCCAATATAACAT
1 TCAAATATAATATCAAATATGTGCATACCTAT-ATGGCCGAATATGC-AAGATCAAATATAACAT
* *
62966221 CACATACGTACATACCTATGTGGCCGAATATA
64 CAAATACGTACATACCTATATGGCCGAATATA
62966253 TGCAAGGTCA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
99 1 0.01
100 78 0.96
101 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (100 bp):
TCAAATATAATATCAAATATGTGCATACCTATATGGCCGAATATGCAAGATCAAATATAACATCA
AATACGTACATACCTATATGGCCGAATATACGAAT
Found at i:62973172 original size:27 final size:27
Alignment explanation
Indices: 62973140--62973205 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 27
62973130 TAGTTGAACT
62973140 ATGGCAAAGTGATAAAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
62973167 ATGGCAAAGTGATAAAGTGTGCCAAAT
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
62973194 ATGGCAAAGTGA
1 ATGGCAAAGTGA
62973206 AATGTGACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:62978167 original size:23 final size:22
Alignment explanation
Indices: 62978136--62978179 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
62978126 TTGATTGTAT
*
62978136 GTTTAGGTATGATTTTAGTTTAA
1 GTTTAGGTATGAATTTA-TTTAA
*
62978159 GTTTTGGTATGAATTTATTTA
1 GTTTAGGTATGAATTTATTTA
62978180 TGAATTGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTAGGTATGAATTTATTTAA
Found at i:62987905 original size:40 final size:40
Alignment explanation
Indices: 62987828--62988002 Score: 210
Period size: 40 Copynumber: 4.4 Consensus size: 40
62987818 ACCCAAGTAT
* ** *
62987828 CTTCGGGATTTAG-CCGGATATAACCACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
62987867 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
62987907 CTTCGGGACTTAGCCCAGATATAGTCGCCAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
62987947 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
62987987 CTTCGGGACTTAGCCC
1 CTTCGGGACTTAGCCC
62988003 AGATTTCATT
Statistics
Matches: 114, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 12 0.11
40 102 0.89
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:62987960 original size:80 final size:80
Alignment explanation
Indices: 62987857--62988006 Score: 248
Period size: 80 Copynumber: 1.9 Consensus size: 80
62987847 ATAACCACTC
* * *
62987857 GCACAAATGCCTTCGGGTCTTAGCCCGGATATGGTC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAAAGCCTTCGGGACTTAGC
62987921 CCAGATATAGTCGCCA
65 CCAGATATAGTCGCCA
*
62987937 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAAAGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAAAGCCTTCGGGACTTAGCC
62988002 CAGAT
66 CAGAT
62988007 TTCATTCGAA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
79 1 0.02
80 64 0.98
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAAAGCCTTCGGGACTTAGCC
CAGATATAGTCGCCA
Found at i:62991241 original size:23 final size:22
Alignment explanation
Indices: 62991210--62991253 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
62991200 TTGATCGTAT
*
62991210 GTTTAGGTATGATTTTAGTTTAA
1 GTTTAGGTATGAATTTA-TTTAA
*
62991233 GTTTTGGTATGAATTTATTTA
1 GTTTAGGTATGAATTTATTTA
62991254 TGAATTGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTAGGTATGAATTTATTTAA
Found at i:62995086 original size:29 final size:28
Alignment explanation
Indices: 62995017--62995117 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 28
62995007 TATAGTAAGT
* * **
62995017 CCGCACACTTAGTGTTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATTGAAC
*
62995045 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAA-TTGAAC
62995074 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAA-TTGAAC
*
62995103 CCACACACTTAGTGC
1 CCGCACACTTAGTGC
62995118 CAATTTCATG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 19 0.30
29 45 0.70
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATTGAAC
Found at i:62999068 original size:9 final size:9
Alignment explanation
Indices: 62999054--62999179 Score: 84
Period size: 9 Copynumber: 14.0 Consensus size: 9
62999044 TATTACGTAA
*
62999054 GTAAGTTTT
1 GTAAGTTAT
62999063 GTAAGTTAT
1 GTAAGTTAT
62999072 GTAAGTTAT
1 GTAAGTTAT
*
62999081 G-ATA-TGAT
1 GTA-AGTTAT
* *
62999089 ATACATTTAT
1 GTA-AGTTAT
*
62999099 GT-A-TTAC
1 GTAAGTTAT
62999106 GTAAGTTAT
1 GTAAGTTAT
62999115 GTCAAGTATGAT
1 GT-AAGT-T-AT
* *
62999127 ATATATTTAT
1 GTA-AGTTAT
62999137 GT-A-TTAT
1 GTAAGTTAT
62999144 GTAAGTTAT
1 GTAAGTTAT
*
62999153 GTAAGTTTT
1 GTAAGTTAT
62999162 GTAAGTTAT
1 GTAAGTTAT
62999171 GTAAGTTAT
1 GTAAGTTAT
62999180 TATATGCTAT
Statistics
Matches: 93, Mismatches: 13, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
7 11 0.12
8 8 0.09
9 55 0.59
10 11 0.12
11 3 0.03
12 5 0.05
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:62999135 original size:38 final size:37
Alignment explanation
Indices: 62999072--62999158 Score: 126
Period size: 38 Copynumber: 2.4 Consensus size: 37
62999062 TGTAAGTTAT
62999072 GTAAGTTATG--A-TATGATATACATTTATGTATTAC
1 GTAAGTTATGTAAGTATGATATACATTTATGTATTAC
* *
62999106 GTAAGTTATGTCAAGTATGATATATATTTATGTATTAT
1 GTAAGTTATGT-AAGTATGATATACATTTATGTATTAC
62999144 GTAAGTTATGTAAGT
1 GTAAGTTATGTAAGT
62999159 TTTGTAAGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
34 10 0.21
37 5 0.11
38 32 0.68
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.45
Consensus pattern (37 bp):
GTAAGTTATGTAAGTATGATATACATTTATGTATTAC
Found at i:62999424 original size:15 final size:15
Alignment explanation
Indices: 62999400--62999454 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
62999390 AAAAAATTAT
62999400 TTTAATTAAATAATA
1 TTTAATTAAATAATA
* *
62999415 TTTAAATAAATTAT-
1 TTTAATTAAATAATA
*
62999429 TTTAGTTAAATAATA
1 TTTAATTAAATAATA
*
62999444 TTTAAGTAAAT
1 TTTAATTAAAT
62999455 TAATCCAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
14 11 0.34
15 21 0.66
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (15 bp):
TTTAATTAAATAATA
Found at i:62999437 original size:29 final size:29
Alignment explanation
Indices: 62999393--62999456 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
62999383 CATGGAAAAA
62999393 AAATTATTTTAATTAAATAATATTTAAAT
1 AAATTATTTTAATTAAATAATATTTAAAT
* *
62999422 AAATTATTTTAGTTAAATAATATTTAAGT
1 AAATTATTTTAATTAAATAATATTTAAAT
62999451 AAATTA
1 AAATTA
62999457 ATCCAAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
AAATTATTTTAATTAAATAATATTTAAAT
Found at i:62999559 original size:195 final size:194
Alignment explanation
Indices: 62999221--62999621 Score: 687
Period size: 195 Copynumber: 2.1 Consensus size: 194
62999211 ATTATTTCCC
* *
62999221 TTTAAA-AAATTATTTTAATTAAATAATATTTAAATTAATTAATCCAAATTATGTAATTTAAAAA
1 TTTAAATAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAA
* *
62999285 ATTGTGTATAAAAAGTTGAAAATCGTATAAGATGAAATGTCAACTTTGTTACATGAAAAAGAAAT
66 ATTGTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTACAAGAAAAAGAAAT
*
62999350 AATAAACATAAAATTTGACGATGTGGAAAATCACATGGAAAAAAAATTATTTTAATTAAATAATA
131 AATAAAAATAAAATTTGACGATGTGGAAAATCACATGG-AAAAAAATTATTTTAATTAAATAATA
* *
62999415 TTTAAATAAATTATTTTAGTTAAATAATATTTAAGTAAATTAATCCAAATTATATAATTTAAAAA
1 TTTAAATAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAA
*
62999480 ATTGTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCAAGAAAAAGAAAT
66 ATTGTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTACAAGAAAAAGAAAT
* * *
62999545 AATAAAAATAAAATTTGATGATGTGGAAAATCACATGGAAATAAATTATTTTAATTAAATGATA
131 AATAAAAATAAAATTTGACGATGTGGAAAATCACATGGAAAAAAATTATTTTAATTAAATAATA
62999609 TTTAAATAAATTA
1 TTTAAATAAATTA
62999622 ATACAAAATA
Statistics
Matches: 195, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
194 43 0.22
195 152 0.78
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.35
Consensus pattern (194 bp):
TTTAAATAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAA
ATTGTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTACAAGAAAAAGAAAT
AATAAAAATAAAATTTGACGATGTGGAAAATCACATGGAAAAAAATTATTTTAATTAAATAATA
Found at i:62999754 original size:14 final size:14
Alignment explanation
Indices: 62999735--62999765 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
62999725 CTTGTTTTAA
*
62999735 TATGGTAATGGCAT
1 TATGGTAATGACAT
62999749 TATGGTAATGACAT
1 TATGGTAATGACAT
62999763 TAT
1 TAT
62999766 CGACTAACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (14 bp):
TATGGTAATGACAT
Found at i:63000029 original size:24 final size:24
Alignment explanation
Indices: 62999997--63000043 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
62999987 TTAACTTAAA
*
62999997 TGATAAAATGGATGATAATATTTG
1 TGATAAAATGGATGAGAATATTTG
63000021 TGATAAAATGGATGAGAATATTT
1 TGATAAAATGGATGAGAATATTT
63000044 CAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (24 bp):
TGATAAAATGGATGAGAATATTTG
Found at i:63002478 original size:17 final size:19
Alignment explanation
Indices: 63002442--63002478 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
63002432 ATAAAATTTG
*
63002442 AAATCTTGAGAATTATTTA
1 AAATCTTGAGAATTAATTA
63002461 AAAT-TTGA-AATTAATTA
1 AAATCTTGAGAATTAATTA
63002478 A
1 A
63002479 TATATAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 4 0.24
19 4 0.24
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (19 bp):
AAATCTTGAGAATTAATTA
Found at i:63002636 original size:15 final size:15
Alignment explanation
Indices: 63002613--63002686 Score: 80
Period size: 15 Copynumber: 4.9 Consensus size: 15
63002603 AAACCCCTGT
63002613 CCCCTTAACCCTTAAA
1 CCCC-TAACCCTTAAA
* *
63002629 CCCCTAACCCAT-AT
1 CCCCTAACCCTTAAA
*
63002643 CCCATTAACCCTTAAA
1 CCC-CTAACCCTTAAA
*
63002659 CCCTTAACCCTT-AA
1 CCCCTAACCCTTAAA
63002673 CCCCTAACCCTTAA
1 CCCCTAACCCTTAA
63002687 CCTTTAAATC
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
14 17 0.35
15 24 0.49
16 8 0.16
ACGTcount: A:0.31, C:0.45, G:0.00, T:0.24
Consensus pattern (15 bp):
CCCCTAACCCTTAAA
Found at i:63002638 original size:30 final size:30
Alignment explanation
Indices: 63002612--63002686 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
63002602 CAAACCCCTG
63002612 TCCCCTTAACCCTTAAACCCCTAACCCATA
1 TCCCCTTAACCCTTAAACCCCTAACCCATA
* * *
63002642 TCCCATTAACCCTTAAACCCTTAACCCTTA
1 TCCCCTTAACCCTTAAACCCCTAACCCATA
*
63002672 ACCCC-TAACCCTTAA
1 TCCCCTTAACCCTTAA
63002687 CCTTTAAATC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 10 0.25
30 30 0.75
ACGTcount: A:0.31, C:0.44, G:0.00, T:0.25
Consensus pattern (30 bp):
TCCCCTTAACCCTTAAACCCCTAACCCATA
Found at i:63002662 original size:8 final size:7
Alignment explanation
Indices: 63002614--63002693 Score: 88
Period size: 7 Copynumber: 11.0 Consensus size: 7
63002604 AACCCCTGTC
63002614 CCCTTAA
1 CCCTTAA
63002621 CCCTTAAA
1 CCCTT-AA
*
63002629 CCCCTAA
1 CCCTTAA
* *
63002636 CCCATAT
1 CCCTTAA
63002643 CCCATTAA
1 CCC-TTAA
63002651 CCCTTAAA
1 CCCTT-AA
63002659 CCCTTAA
1 CCCTTAA
63002666 CCCTTAA
1 CCCTTAA
*
63002673 CCCCTAA
1 CCCTTAA
63002680 CCCTTAA
1 CCCTTAA
*
63002687 CCTTTAA
1 CCCTTAA
63002694 ATCTTAAATC
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
7 44 0.71
8 18 0.29
ACGTcount: A:0.31, C:0.42, G:0.00, T:0.26
Consensus pattern (7 bp):
CCCTTAA
Found at i:63002966 original size:14 final size:15
Alignment explanation
Indices: 63002939--63002977 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
63002929 CCTAACCAAT
63002939 AACCCCTAAACTTTA
1 AACCCCTAAACTTTA
*
63002954 AACCCC-AACCTTTA
1 AACCCCTAAACTTTA
63002968 AA-CCCTAAAC
1 AACCCCTAAAC
63002978 CCATAATCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 3 0.14
14 12 0.57
15 6 0.29
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCCTAAACTTTA
Found at i:63003394 original size:40 final size:40
Alignment explanation
Indices: 63003344--63003437 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
63003334 CGCTTTGTCA
* *
63003344 GCTCAATCTATAG-TGGAGTTTTTCAAAAAGCACCGCTAAT
1 GCTCGATCTATAGCTGCA-TTTTTCAAAAAGCACCGCTAAT
* * *
63003384 GCTCGATCTATAGCTGCATTTTTCAGAAAGCGCTGCTAAT
1 GCTCGATCTATAGCTGCATTTTTCAAAAAGCACCGCTAAT
* *
63003424 GCTTGATCTGTAGC
1 GCTCGATCTATAGC
63003438 ACCGCTAATG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 43 0.93
41 3 0.07
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (40 bp):
GCTCGATCTATAGCTGCATTTTTCAAAAAGCACCGCTAAT
Found at i:63003541 original size:40 final size:40
Alignment explanation
Indices: 63003497--63003602 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 40
63003487 TTTTTTTGTG
* *
63003497 GCATTTTTAAAAAAGCACCGCTAATGGTCGAGCTATAGCA
1 GCATTTTTAAAAAAGCGCCGCTAATGCTCGAGCTATAGCA
** * * *
63003537 GCATTTTTTGAAAAGCGCCGGTAATGCTCGATCTATAGCG
1 GCATTTTTAAAAAAGCGCCGCTAATGCTCGAGCTATAGCA
*
63003577 GCATTTTTCAAAAAGCGCCGCTAATG
1 GCATTTTTAAAAAAGCGCCGCTAATG
63003603 ACACTAAAGC
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (40 bp):
GCATTTTTAAAAAAGCGCCGCTAATGCTCGAGCTATAGCA
Found at i:63005553 original size:18 final size:19
Alignment explanation
Indices: 63005517--63005557 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
63005507 AGAATACGCA
63005517 AAATATAATGTGAAAATTG
1 AAATATAATGTGAAAATTG
*
63005536 AAATTTAATGTG-AAATTG
1 AAATATAATGTGAAAATTG
63005554 AAAT
1 AAAT
63005558 GTGTAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (19 bp):
AAATATAATGTGAAAATTG
Found at i:63006230 original size:21 final size:22
Alignment explanation
Indices: 63006202--63006252 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
63006192 TTGAAATGGC
63006202 AAAT-ATGAGAAATG-AATATG
1 AAATGATGAGAAATGAAATATG
63006222 AGAA-GATGAGAAATGAAATATG
1 A-AATGATGAGAAATGAAATATG
63006244 AAATGATGA
1 AAATGATGA
63006253 AATAAGATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 1 0.04
21 14 0.52
22 12 0.44
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.22
Consensus pattern (22 bp):
AAATGATGAGAAATGAAATATG
Found at i:63013423 original size:19 final size:19
Alignment explanation
Indices: 63013376--63013436 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
63013366 TTGTAATGCA
* *
63013376 AATAAAGGCACCGAAGTAC
1 AATAGAGGCACCGAAGTGC
* *
63013395 AAACAGAGGCATCGAAGTGC
1 -AATAGAGGCACCGAAGTGC
63013415 AATAGAGGCACCGAAGTGC
1 AATAGAGGCACCGAAGTGC
63013434 AAT
1 AAT
63013437 CCTGTACAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
19 20 0.57
20 15 0.43
ACGTcount: A:0.43, C:0.20, G:0.26, T:0.11
Consensus pattern (19 bp):
AATAGAGGCACCGAAGTGC
Found at i:63024351 original size:43 final size:42
Alignment explanation
Indices: 63024283--63024420 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 42
63024273 AACGTCCCTA
* * * *
63024283 ACGTGGTCTTACATGTAATCTCATATCGATGCCACTATCCTAG
1 ACGTGGTCTTACACGTAAACACATATCGATGCCAC-ATCCCAG
* * * *
63024326 ACAG-GGTCTTACTCTTAAACACATATTGATGCCAACGTCCCAG
1 AC-GTGGTCTTACACGTAAACACATATCGATGCC-ACATCCCAG
* * *
63024369 ACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCGG
1 ACGTGGTCTTACACGTAAACACATATCGATGCC-ACATCCCAG
63024412 ACGTGGTCT
1 ACGTGGTCT
63024421 AATACATGAT
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.01
43 75 0.95
44 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (42 bp):
ACGTGGTCTTACACGTAAACACATATCGATGCCACATCCCAG
Found at i:63025842 original size:43 final size:43
Alignment explanation
Indices: 63025781--63026109 Score: 469
Period size: 43 Copynumber: 7.7 Consensus size: 43
63025771 CGGTTTATCA
*
63025781 TGGTCTTATACGTAATCACATATCGATGCCAACGTCCCAGACG
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACG
** * *
63025824 TGGTCTTATGCGTAATCACATATCGATGCCAACGTCCCAAACT
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACG
* * * *
63025867 TGGTCTTACAAGTAATAACATATCGATGCCAACATCCCAGATG
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACG
** *
63025910 TGGTCTTATGCTTAATCACATATCGATGCCAACGTCCCAGACG
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACG
*
63025953 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAAG
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACG
* *
63025996 TGGTCTTACGCGTAATCACATATCGATGCCAATGTCCCAGACG
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACG
* * * *
63026039 TGGCCTTACGCGTAATCACATGTCGATGCGAACGTCCCAGACG
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACG
* *
63026082 TAGTCTTACACGTAATCACATATTGATG
1 TGGTCTTACACGTAATCACATATCGATG
63026110 TCTCATATAT
Statistics
Matches: 252, Mismatches: 34, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 252 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACG
Found at i:63028482 original size:46 final size:46
Alignment explanation
Indices: 63028429--63028600 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
63028419 TGGTTGAGCA
*
63028429 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
63028475 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
63028522 TCCGAACTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
63028568 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63028601 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
45 14 0.14
46 48 0.47
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:63028585 original size:93 final size:92
Alignment explanation
Indices: 63028426--63028595 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 92
63028416 GGATGGTTGA
* * *
63028426 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
63028491 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGT-CGAGTTCGTGAGATGTAACTAG
* * * *
63028519 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
63028584 TGAGTCGAGTTC
66 TGAGTCGAGTTC
63028596 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 7 0.10
93 63 0.90
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAGATGTAACTAG
Found at i:63037629 original size:46 final size:46
Alignment explanation
Indices: 63037579--63037751 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
63037569 TGGTTGAGCA
*
63037579 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
63037625 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
63037672 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
63037718 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63037752 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:63037735 original size:93 final size:93
Alignment explanation
Indices: 63037576--63037746 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
63037566 GGATGGTTGA
* *
63037576 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
63037641 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
63037669 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
63037734 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63037747 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63040967 original size:26 final size:26
Alignment explanation
Indices: 63040938--63040987 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
63040928 CATAGTGTCT
*
63040938 GTACCTCGTTCGGAAAGCAGTCTTCC
1 GTACCTCGTTCGAAAAGCAGTCTTCC
63040964 GTACCTCGTTCGAAAAGCAGTCTT
1 GTACCTCGTTCGAAAAGCAGTCTT
63040988 TGGCACATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (26 bp):
GTACCTCGTTCGAAAAGCAGTCTTCC
Found at i:63044148 original size:43 final size:43
Alignment explanation
Indices: 63044087--63044356 Score: 360
Period size: 43 Copynumber: 6.3 Consensus size: 43
63044077 TCGATGTCAA
* **
63044087 TACACGTAATTACATATCGATGCCAATGTCCCAGACGTGGTCT
1 TACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCT
* * * *
63044130 TACACGTAATCACATATCGATGCCAACACCCCAAATGTGGTTT
1 TACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCT
* * * *
63044173 TACATGTAATCACTTATCGATGCCAACATCCCAGACATGGTTT
1 TACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCT
* **
63044216 TACACGTAATCACATATCGATGCTAATGTCCCAGACGTGGTCT
1 TACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCT
* *
63044259 TACGCGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCT
1 TACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCT
* ** *
63044302 TACACGTAATCACATATCAATGCCAACATCCTGGATGTGGTCT
1 TACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCT
63044345 TACACGTAATCA
1 TACACGTAATCA
63044357 ACTTTCACTT
Statistics
Matches: 198, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 198 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
TACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCT
Found at i:63045093 original size:15 final size:15
Alignment explanation
Indices: 63045070--63045100 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63045060 TCAAAATTTC
63045070 CAATACAAAACATAT
1 CAATACAAAACATAT
*
63045085 CAATCCAAAACATAT
1 CAATACAAAACATAT
63045100 C
1 C
63045101 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:63051933 original size:18 final size:20
Alignment explanation
Indices: 63051895--63051934 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
63051885 AGGACTTGTC
*
63051895 TACTGCATTATTTGATGCTG
1 TACTGCATTATTTGATACTG
63051915 TACTG-ATTA-TTGATACTG
1 TACTGCATTATTTGATACTG
63051933 TA
1 TA
63051935 ATGGGTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 4 0.21
20 5 0.26
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.45
Consensus pattern (20 bp):
TACTGCATTATTTGATACTG
Found at i:63054027 original size:40 final size:40
Alignment explanation
Indices: 63053958--63054175 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
63053948 AACCCAAGTA
* * **
63053958 CCTTCGGGATTTAG-CCGGATATAACAACTCACACAAATG
1 CCTTCGAGACTTAGCCCGGATATAGTAACTCACACAAATG
*
63053997 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGAGACTTAGCCCGGATATAGTAACTCACACAAATG
**
63054037 CCTTC-AGGACTTAGCCCGGGCATAGTAACTCACACAAATG
1 CCTTCGA-GACTTAGCCCGGATATAGTAACTCACACAAATG
* *
63054077 CCTTCGAGACTTAACCCGGATATAGTAACTCACACAAATA
1 CCTTCGAGACTTAGCCCGGATATAGTAACTCACACAAATG
* * *
63054117 CCTTCGGGACTTAACCCGGATATAGTCACT-AGCACAAATG
1 CCTTCGAGACTTAGCCCGGATATAGTAACTCA-CACAAATG
*
63054157 CCTTCG-GATCTTAGTCCGG
1 CCTTCGAGA-CTTAGCCCGG
63054176 TTATCATCCG
Statistics
Matches: 157, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 16 0.10
40 140 0.89
41 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
CCTTCGAGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:63057222 original size:40 final size:40
Alignment explanation
Indices: 63057147--63057432 Score: 421
Period size: 40 Copynumber: 7.2 Consensus size: 40
63057137 AACCCAAGTA
* ** *
63057147 CCTTCGGGATTTAG-CCGGATATAACAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63057186 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
63057226 CCGTCAGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
63057266 CCTTCTGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63057306 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63057346 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
63057386 CCTTCGAGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63057426 CCTTCGG
1 CCTTCGG
63057433 ATCTTAGTCC
Statistics
Matches: 226, Mismatches: 20, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 13 0.06
40 213 0.94
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63065302 original size:40 final size:40
Alignment explanation
Indices: 63065233--63065417 Score: 300
Period size: 40 Copynumber: 4.7 Consensus size: 40
63065223 AACCCAAGTA
* **
63065233 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63065272 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63065312 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
63065352 CCTTCGGGAATTAACCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63065392 CCTTCGGGACTTAACCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGT
63065418 CACTGTGACA
Statistics
Matches: 138, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 13 0.09
40 125 0.91
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63067439 original size:40 final size:40
Alignment explanation
Indices: 63067207--63067432 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
63067197 TCGAATGATG
* * *
63067207 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
63067247 TCCGGACTAAGATCCGAAGGAATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
63067287 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
63067327 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
63067367 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
63067408 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
63067433 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 159 0.94
41 9 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63072951 original size:24 final size:24
Alignment explanation
Indices: 63072924--63072982 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
63072914 TTTCATACTC
* *
63072924 ATCTTCATGTCGACCCTTGCCTTT
1 ATCTTCATCTCCACCCTTGCCTTT
*
63072948 ATCTTCATCTCCACCCTTGTCTTT
1 ATCTTCATCTCCACCCTTGCCTTT
* *
63072972 GTCTTCGTCTC
1 ATCTTCATCTC
63072983 TATCGTTGTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.10, C:0.36, G:0.10, T:0.44
Consensus pattern (24 bp):
ATCTTCATCTCCACCCTTGCCTTT
Found at i:63072993 original size:18 final size:18
Alignment explanation
Indices: 63072970--63073024 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
63072960 ACCCTTGTCT
63072970 TTGTCTTCGTCTCTATCG
1 TTGTCTTCGTCTCTATCG
* *
63072988 TTGTCTTCATCT-TCATTG
1 TTGTCTTCGTCTCT-ATCG
* *
63073006 TCGTCTTCGTCTCCATCG
1 TTGTCTTCGTCTCTATCG
63073024 T
1 T
63073025 CTTCCTCCGT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
17 1 0.03
18 28 0.97
ACGTcount: A:0.07, C:0.29, G:0.15, T:0.49
Consensus pattern (18 bp):
TTGTCTTCGTCTCTATCG
Found at i:63076994 original size:21 final size:21
Alignment explanation
Indices: 63076970--63077016 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
63076960 TGTGGATAGG
63076970 GGACACA-TCCGTGTGACTATA
1 GGACACACT-CGTGTGACTATA
*
63076991 GGACACACTCGTGTGACTATG
1 GGACACACTCGTGTGACTATA
63077012 GGACA
1 GGACA
63077017 TGCCTGTGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (21 bp):
GGACACACTCGTGTGACTATA
Found at i:63078790 original size:40 final size:40
Alignment explanation
Indices: 63078735--63078852 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
63078725 GAAAAAAAAA
63078735 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
63078775 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
63078815 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
63078853 GTTACATCCG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:63079780 original size:16 final size:17
Alignment explanation
Indices: 63079761--63079793 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
63079751 GTATAAATGG
63079761 AATTAAGTAAT-GAATA
1 AATTAAGTAATCGAATA
*
63079777 AATTATGTAATCGAATA
1 AATTAAGTAATCGAATA
63079794 TTGATGAGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (17 bp):
AATTAAGTAATCGAATA
Found at i:63081621 original size:32 final size:32
Alignment explanation
Indices: 63081571--63081633 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
63081561 CACGGCTTAC
* *
63081571 AGCCATCAGTAGTGGTAATTTGATCAGCACAA
1 AGCCATCAATAGTGGTAATATGATCAGCACAA
*
63081603 AGCCATCAATAGCT-GTAATATGATCGGCACA
1 AGCCATCAATAG-TGGTAATATGATCAGCACA
63081634 CAGTCATGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (32 bp):
AGCCATCAATAGTGGTAATATGATCAGCACAA
Found at i:63082169 original size:27 final size:27
Alignment explanation
Indices: 63082125--63082199 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
63082115 CAAAACAGTC
* *
63082125 ATTTTACCCTACAGGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
*
63082152 ATTTTACACTATAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
*
63082179 ATTTTACACTACAAGTGTATT
1 ATTTTACACTACAAGGGTATT
63082200 AACGACCCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGGTA
Found at i:63085248 original size:25 final size:26
Alignment explanation
Indices: 63085194--63085289 Score: 90
Period size: 25 Copynumber: 3.8 Consensus size: 26
63085184 GAGCAATAAA
* **
63085194 CGGTAAGCTCATATAAGCTGA-ATAAT
1 CGGTAAGCTCCTACGAGCTGAGA-AAT
* * *
63085220 -GGTAAGCTCCTCCGAGTTGAGTAA-
1 CGGTAAGCTCCTACGAGCTGAGAAAT
*
63085244 CGGTAAGCTCTTACGAGCTGAGAAAT
1 CGGTAAGCTCCTACGAGCTGAGAAAT
*
63085270 CGGTAAGCTCATACGAGCTG
1 CGGTAAGCTCCTACGAGCTG
63085290 CGGTGAGTTC
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
25 37 0.66
26 19 0.34
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CGGTAAGCTCCTACGAGCTGAGAAAT
Found at i:63088031 original size:25 final size:24
Alignment explanation
Indices: 63087983--63088031 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
63087973 ATGTAATTTA
*
63087983 ATTTTAGAAAAATTATTTGATATC
1 ATTTTAGAAAAATTATCTGATATC
63088007 ATTTTAGAAGAAATATATCTG-TATC
1 ATTTTAGAA-AAAT-TATCTGATATC
63088032 TTATTGAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 9 0.41
25 8 0.36
26 5 0.23
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (24 bp):
ATTTTAGAAAAATTATCTGATATC
Found at i:63089027 original size:14 final size:14
Alignment explanation
Indices: 63089008--63089034 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63088998 AACGAAGAAA
63089008 CAGCTAAGCAAAAC
1 CAGCTAAGCAAAAC
63089022 CAGCTAAGCAAAA
1 CAGCTAAGCAAAA
63089035 GCTTTTCGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.26, G:0.15, T:0.07
Consensus pattern (14 bp):
CAGCTAAGCAAAAC
Found at i:63090549 original size:80 final size:79
Alignment explanation
Indices: 63090453--63090643 Score: 224
Period size: 83 Copynumber: 2.4 Consensus size: 79
63090443 TGCTGAGCTC
* *
63090453 GTTTTTATTTGTTCAGTAACGGTAGTTTCTGTTCTCCAATTATGCTTGG-TCGTG-CTTCTAAAA
1 GTTTTTATTTGTTCAGTGACGGTAGTTTCTATTCTCCAATTATGCTTGGCT-GTGCCTT-TAAAA
63090516 AGTTGCTGAGATTGTT
64 AGTTGCTGAGATTGTT
* * * * * *
63090532 GTTTTTAATTTGTTCAGTGACAGTAATTGCTTCTATTCTTCATTTGTGCTTGGCTTTGCCTTTAA
1 GTTTTT-ATTTGTTCAGTGACGGT-A--GTTTCTATTCTCCAATTATGCTTGGCTGTGCCTTTAA
63090597 AAAGTTGCTGAGATTGTT
62 AAAGTTGCTGAGATTGTT
*
63090615 GTTTATCATTTGTTCAGTGACGGTAGTTT
1 GTTT-TTATTTGTTCAGTGACGGTAGTTT
63090644 TACAAATCCA
Statistics
Matches: 94, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
79 6 0.06
80 18 0.19
81 1 0.01
82 1 0.01
83 63 0.67
84 5 0.05
ACGTcount: A:0.19, C:0.13, G:0.21, T:0.47
Consensus pattern (79 bp):
GTTTTTATTTGTTCAGTGACGGTAGTTTCTATTCTCCAATTATGCTTGGCTGTGCCTTTAAAAAG
TTGCTGAGATTGTT
Found at i:63090864 original size:3 final size:3
Alignment explanation
Indices: 63090858--63090884 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
63090848 ACAACCACAA
63090858 CAG CAG CAG CAG CAG CAG CAG CAG CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG
63090885 TTCTTGCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:63093207 original size:10 final size:10
Alignment explanation
Indices: 63093192--63093224 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
63093182 ATATATACAC
63093192 GAAATAATAT
1 GAAATAATAT
63093202 GAAATAATAT
1 GAAATAATAT
*
63093212 GAAATTATAT
1 GAAATAATAT
63093222 GAA
1 GAA
63093225 TACACCAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (10 bp):
GAAATAATAT
Found at i:63095068 original size:17 final size:17
Alignment explanation
Indices: 63095043--63095075 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63095033 AAAATTACAA
63095043 AATAAATTTTAAAATTC
1 AATAAATTTTAAAATTC
*
63095060 AATATATTTTAAAATT
1 AATAAATTTTAAAATT
63095076 TTCAAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
AATAAATTTTAAAATTC
Found at i:63095098 original size:25 final size:25
Alignment explanation
Indices: 63095046--63095097 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
63095036 ATTACAAAAT
63095046 AAATTTTAAAATTCAATATATTTTA
1 AAATTTTAAAATTCAATATATTTTA
*
63095071 AAATTTTCAAAATT-TATAT-TTTTA
1 AAATTTT-AAAATTCAATATATTTTA
63095095 AAA
1 AAA
63095098 AAATCATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 8 0.32
25 11 0.44
26 6 0.24
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
AAATTTTAAAATTCAATATATTTTA
Found at i:63095664 original size:26 final size:26
Alignment explanation
Indices: 63095617--63095666 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
63095607 CACCGAAATA
* ** *
63095617 AAGCAGAAGCAAACTCTCAAGTCAAG
1 AAGCAAAAGCAAACAATAAAGTCAAG
63095643 AAGCAAAAGCAAACAATAAAGTCA
1 AAGCAAAAGCAAACAATAAAGTCA
63095667 CAAGAAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.54, C:0.20, G:0.16, T:0.10
Consensus pattern (26 bp):
AAGCAAAAGCAAACAATAAAGTCAAG
Found at i:63097964 original size:28 final size:26
Alignment explanation
Indices: 63097926--63098049 Score: 140
Period size: 28 Copynumber: 4.5 Consensus size: 26
63097916 AATTTTTCTC
*
63097926 GCACACTTAGTGCTCAATAACCGATTT
1 GCACACTTAGTGCTCAA-AACCAATTT
*
63097953 CGCACACTTAGTGCTCGGAAATCCAATTT
1 -GCACACTTAGTGCTC--AAAACCAATTT
* *
63097982 GCACACTTAGTGCTTAAAACCAACTT
1 GCACACTTAGTGCTCAAAACCAATTT
* *
63098008 GCACACTTAGTGCTCAATGACCGATTTT
1 GCACACTTAGTGCTCAA-AACC-AATTT
63098036 GCACACTTAGTGCT
1 GCACACTTAGTGCT
63098050 TGGTATCAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
26 25 0.30
27 3 0.04
28 46 0.55
29 7 0.08
30 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCACACTTAGTGCTCAAAACCAATTT
Found at i:63098037 original size:54 final size:55
Alignment explanation
Indices: 63097926--63098050 Score: 150
Period size: 54 Copynumber: 2.3 Consensus size: 55
63097916 AATTTTTCTC
* * *
63097926 GCACACTTAGTGCTCAATAACCGATTTCGCACACTTAGTGCTCGGAAATCCAATTT
1 GCACACTTAGTGCTTAATAACCAACTTCGCACACTTAGTGCTC-GAAATCCAATTT
*
63097982 GCACACTTAGTGCTTAA-AACCAACTT-GCACACTTAGTGCTC--AATGACCGATTTT
1 GCACACTTAGTGCTTAATAACCAACTTCGCACACTTAGTGCTCGAAAT--CC-AATTT
63098036 GCACACTTAGTGCTT
1 GCACACTTAGTGCTT
63098051 GGTATCAAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
51 3 0.05
53 2 0.03
54 34 0.55
55 7 0.11
56 16 0.26
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (55 bp):
GCACACTTAGTGCTTAATAACCAACTTCGCACACTTAGTGCTCGAAATCCAATTT
Found at i:63112803 original size:23 final size:22
Alignment explanation
Indices: 63112772--63112816 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
63112762 AATATAGTCC
* *
63112772 TTTATTTATTTATTTTTTATTCA
1 TTTACTTATCTATTTTTT-TTCA
*
63112795 TTTACTTATCTCTTTTTTTTCA
1 TTTACTTATCTATTTTTTTTCA
63112817 CCATCTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTACTTATCTATTTTTTTTCA
Found at i:63113129 original size:21 final size:23
Alignment explanation
Indices: 63113092--63113142 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 23
63113082 TATTGATTTT
*
63113092 TTTTGTTATCCATTATT-AT-TA
1 TTTTATTATCCATTATTCATCTA
63113113 TTTTATTAT-CATCTATTCATCTA
1 TTTTATTATCCAT-TATTCATCTA
63113136 -TTTATTA
1 TTTTATTA
63113143 CCCTTTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 3 0.12
21 12 0.46
22 9 0.35
23 2 0.08
ACGTcount: A:0.25, C:0.12, G:0.02, T:0.61
Consensus pattern (23 bp):
TTTTATTATCCATTATTCATCTA
Found at i:63113209 original size:3 final size:3
Alignment explanation
Indices: 63113196--63113248 Score: 58
Period size: 3 Copynumber: 18.3 Consensus size: 3
63113186 CTTGTACATA
* *
63113196 TAT TGT TAT TAT TAT TAC TAT TAT TAT T-T TAT CTAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
63113240 TAT T-T TAT T
1 TAT TAT TAT T
63113249 TATATATTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
2 6 0.14
3 33 0.79
4 3 0.07
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:63113221 original size:15 final size:16
Alignment explanation
Indices: 63113201--63113240 Score: 66
Period size: 15 Copynumber: 2.6 Consensus size: 16
63113191 ACATATATTG
63113201 TTATTATTATTA-CTA
1 TTATTATTATTATCTA
63113216 TTATTATT-TTATCTA
1 TTATTATTATTATCTA
63113231 TTATTATTAT
1 TTATTATTAT
63113241 ATTTTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.13
15 19 0.83
16 1 0.04
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATTATTATTATCTA
Found at i:63113250 original size:24 final size:27
Alignment explanation
Indices: 63113202--63113256 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
63113192 CATATATTGT
*
63113202 TATTATTATTACTATTATTATTTTATC
1 TATTATTATTACTATTATTATTTTATA
63113229 TATTATTATTA-TATT-TTA-TTTATA
1 TATTATTATTACTATTATTATTTTATA
63113253 TATT
1 TATT
63113257 TCACTACAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 9 0.33
25 3 0.11
26 4 0.15
27 11 0.41
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (27 bp):
TATTATTATTACTATTATTATTTTATA
Found at i:63113256 original size:18 final size:21
Alignment explanation
Indices: 63113204--63113256 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
63113194 TATATTGTTA
*
63113204 TTAT-TATTACTATTATTATT
1 TTATCTATTATTATTATTATT
63113224 TTATCTATTATTATTA-TATT
1 TTATCTATTATTATTATTATT
*
63113244 TTATTTATATATT
1 TTATCTAT-TATT
63113257 TCACTACAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATCTATTATTATTATTATT
Found at i:63118831 original size:27 final size:26
Alignment explanation
Indices: 63118801--63118891 Score: 71
Period size: 26 Copynumber: 3.4 Consensus size: 26
63118791 CAATTTCCTT
63118801 CTTATTACATTTGCTATCTTTGATTAA
1 CTTATT-CATTTGCTATCTTTGATTAA
* * **
63118828 CTTATTCATTT-CAAGTTAATTTCCTT--
1 CTTATTCATTTGCTA--T-CTTTGATTAA
63118854 CTTATTACATTTGCTATCTTTGATTAA
1 CTTATT-CATTTGCTATCTTTGATTAA
*
63118881 TTTATTCATTT
1 CTTATTCATTT
63118892 CGAGCTATGC
Statistics
Matches: 48, Mismatches: 9, Indels: 15
0.67 0.12 0.21
Matches are distributed among these distances:
25 7 0.15
26 17 0.35
27 17 0.35
28 7 0.15
ACGTcount: A:0.24, C:0.15, G:0.05, T:0.55
Consensus pattern (26 bp):
CTTATTCATTTGCTATCTTTGATTAA
Found at i:63118872 original size:53 final size:53
Alignment explanation
Indices: 63118792--63118892 Score: 193
Period size: 53 Copynumber: 1.9 Consensus size: 53
63118782 ACTCCAAATC
63118792 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAGTT
1 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAGTT
*
63118845 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAATTTATTCATTTC
1 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTC
63118893 GAGCTATGCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.24, C:0.17, G:0.05, T:0.54
Consensus pattern (53 bp):
AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAGTT
Found at i:63119366 original size:46 final size:46
Alignment explanation
Indices: 63119307--63119394 Score: 104
Period size: 46 Copynumber: 1.9 Consensus size: 46
63119297 AAAGAAAGCT
* * *
63119307 CAAATCCTGTACCCCTAAGCTGTAGTGGAATGGATTGAAGAAGATA
1 CAAATCCTATACCCCTAAGCTGCAGTGGAATGGATGGAAGAAGATA
* * * * *
63119353 CAAATCTTATACCCTTGAGTTGCAGTGGGATGGATGGAAGAA
1 CAAATCCTATACCCCTAAGCTGCAGTGGAATGGATGGAAGAA
63119395 ACCAAATTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 34 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (46 bp):
CAAATCCTATACCCCTAAGCTGCAGTGGAATGGATGGAAGAAGATA
Found at i:63121155 original size:20 final size:20
Alignment explanation
Indices: 63121130--63121168 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
63121120 TCGATCAAAC
63121130 CTCTAGAAGACACTAATCAT
1 CTCTAGAAGACACTAATCAT
*
63121150 CTCTAGAGGACACTAATCA
1 CTCTAGAAGACACTAATCA
63121169 CCAAAAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (20 bp):
CTCTAGAAGACACTAATCAT
Found at i:63123084 original size:34 final size:34
Alignment explanation
Indices: 63123013--63123084 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 34
63123003 CGTATCCTAG
*
63123013 CTACAGTCTCAGTCTTCTAAAGTTTTCAGTTTTCC
1 CTACAGTCTCAGTCTTCTAAAG-TTTCAGTTTACC
*
63123048 CTACTGTCTCAGT-TTCTACAA-TTTCAGTATTACC
1 CTACAGTCTCAGTCTTCTA-AAGTTTCAGT-TTACC
63123082 CTA
1 CTA
63123085 ACTACAGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
33 7 0.21
34 12 0.36
35 14 0.42
ACGTcount: A:0.22, C:0.26, G:0.10, T:0.42
Consensus pattern (34 bp):
CTACAGTCTCAGTCTTCTAAAGTTTCAGTTTACC
Found at i:63126797 original size:142 final size:142
Alignment explanation
Indices: 63126539--63127063 Score: 676
Period size: 143 Copynumber: 3.7 Consensus size: 142
63126529 GAATCCATAA
* * * * * * * *
63126539 ATCTTATCTTCTTGAAGTTGTAGTGGAGAAGATTAAAGCCATCAGCCTTATTTTCCTGAAGTTGT
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* * *
63126604 AGTGGAGCAGACTGAAGATAGCGAATCTTAATTCCCTGACATTGTAGTGGAACAAATTAAAGGTA
66 AGTGGAGCAGACTGAAGACAGCGAATCTT-ATTCCCTGACGTTGTAGTGGAACAAATTAAAGCTA
*
63126669 CAAATTATGGTGG
130 CAAATTATGGAGG
* *
63126682 ATCTTATCTTCCTGAGGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTCATCTCCCTGAAGTTG-
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* * * *
63126746 AGTGGAGCAAACTGAAGACAGCGAATCTTACTTTCCTGACGTTGTAGTGGAATAGATTAAAGCTA
66 AGTGGAGCAGACTGAAGACAGCGAATCTTA-TTCCCTGACGTTGTAGTGGAACAAATTAAAGCTA
63126811 CAAATTATGGAGG
130 CAAATTATGGAGG
* * * * * *
63126824 ATCTTATCTTCTTGAAGTTG-TGACGGAGTAGATTGAAGCCACCGGCCTTATCTCCTTGAAGTTA
1 ATCTTATCTTCCTGAAGTTGCAG-TGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
** * *
63126888 CAGTGGAGCAGACTGAAGACAAAGAATCTTATCTCCCTGAAGTTGTAGTGGAACAAATTGAAGCT
65 CAGTGGAGCAGACTGAAGACAGCGAATCTTAT-TCCCTGACGTTGTAGTGGAACAAATTAAAGCT
* *
63126953 ACAAATTATGGCGA
129 ACAAATTATGGAGG
* * * * * *
63126967 ATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTTAAGCCATCAACCTTATCTCTCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
63127032 AGTGGAGCAGACTGAAGACAGCGAATCTTATT
66 AGTGGAGCAGACTGAAGACAGCGAATCTTATT
63127064 TCCTTGAAGC
Statistics
Matches: 328, Mismatches: 49, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
141 2 0.01
142 124 0.38
143 201 0.61
144 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (142 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
AGTGGAGCAGACTGAAGACAGCGAATCTTATTCCCTGACGTTGTAGTGGAACAAATTAAAGCTAC
AAATTATGGAGG
Found at i:63126929 original size:45 final size:45
Alignment explanation
Indices: 63126870--63127322 Score: 182
Period size: 45 Copynumber: 9.8 Consensus size: 45
63126860 AGCCACCGGC
* *
63126870 CTTATCTCCTTGAAGTTACAGTGGAGCAGACTGAAGACAAAGAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAAAGAAT
** * *
63126915 CTTATCTCCCTGAAGTTGTAGTGGAACAAATTGAAGCTACAAATTATGGCGAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAG--AC-AA--A----GAAT
* * * ** *
63126969 CTTATCTTCCTGAAGTTACAGTGGAGCAGATTTAAG-CCATCAAC
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAAAGAAT
* * * **
63127013 CTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAAAGAAT
* * * * ** ** * *
63127058 CTTATTTCCTTGAAGCTGCAGCAGAATAGATTGAAGCTACAAGTGGCAAAC
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAG--ACAA--AG--AAT
** ** **
63127109 CTTATCTCCCTGAAGTTACAGTGGAGCAGGCTGAA-ATTACCAATT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAAAGAA-T
* * * * ** *
63127154 CTTACCTCCTTGAAGTTCCAGTGGAGTAGATTGAAGTTACA-AAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAAAGAAT
* * * *
63127198 CTCT-TCTCCCTGAAATTACATTGGAGCAGATTGAAG-C-TACAAT
1 CT-TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAAAGAAT
** * * ** * * *
63127241 CCTTATCTTTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACA-AAC
1 -CTTATCTCCCTGAAGTTACAGTGGAGCA-GAT-TGAAGACAAAGAAT
* *
63127288 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAA
63127323 ATTACCAATT
Statistics
Matches: 294, Mismatches: 88, Indels: 53
0.68 0.20 0.12
Matches are distributed among these distances:
42 1 0.00
43 4 0.01
44 86 0.29
45 98 0.33
46 27 0.09
47 8 0.03
48 5 0.02
49 1 0.00
50 2 0.01
51 28 0.10
54 34 0.12
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAAAGAAT
Found at i:63127091 original size:143 final size:143
Alignment explanation
Indices: 63126538--63127137 Score: 642
Period size: 143 Copynumber: 4.2 Consensus size: 143
63126528 TGAATCCATA
* ** * * * *
63126538 AATCTTATCTTCTTGAAGTTGTAGTGGAGAAGATTAAAGCCATCAGCCTTAT-TTTCCTGAAGTT
1 AATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCT-CTGAAGTT
* * *
63126602 GTAGTGGAGCAGACTGAAGATAGCGAATCTTAATTCCCTGACA-TTGTAGTGGAACAAATTAAAG
65 GCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGA-AGTTGTAGTGGAACAAATTAAAG
* *
63126666 GTACAAATTATGGTG
129 CTACAAATTATGGCG
* * * * * *
63126681 GATCTTATCTTCCTGAGGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTCATCTCCCTGAAGTTG
1 AATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTG
* * * *
63126746 -AGTGGAGCAAACTGAAGACAGCGAATCTTACTTT-CCTGACGTTGTAGTGGAATAGATTAAAGC
66 CAGTGGAGCAGACTGAAGACAGCGAATCTTA-TTTCCCTGAAGTTGTAGTGGAACAAATTAAAGC
*
63126809 TACAAATTATGGAG
130 TACAAATTATGGCG
* * ** * * *
63126823 GATCTTATCTTCTTGAAGTT-GTGACGGAGTAGATTGAAGCCACCGGCCTTATCTC-CTTGAAGT
1 AATCTTATCTTCCTGAAGTTACAG-TGGAGCAGATTGAAGCCACCAGCCTTATCTCTC-TGAAGT
* ** * *
63126886 TACAGTGGAGCAGACTGAAGACAAAGAATCTTATCTCCCTGAAGTTGTAGTGGAACAAATTGAAG
64 TGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAAATTAAAG
63126951 CTACAAATTATGGCG
129 CTACAAATTATGGCG
* * *
63126966 AATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTTAAGCCATCAACCTTATCTCTCTGAAGTTG
1 AATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTG
* * * ** * * *
63127031 CAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCTTGAAGCTGCAGCAGAATAGATTGAAGCT
66 CAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAAATTAAAGCT
* *
63127096 AC-AA--GTGGCA
131 ACAAATTATGGCG
* *
63127106 AACCTTATCTCCCTGAAGTTACAGTGGAGCAG
1 AATCTTATCTTCCTGAAGTTACAGTGGAGCAG
63127138 GCTGAAATTA
Statistics
Matches: 388, Mismatches: 60, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
140 34 0.09
141 2 0.01
142 122 0.31
143 227 0.59
144 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (143 bp):
AATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTG
CAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAAATTAAAGCT
ACAAATTATGGCG
Found at i:63127184 original size:96 final size:96
Alignment explanation
Indices: 63127010--63127195 Score: 223
Period size: 96 Copynumber: 1.9 Consensus size: 96
63127000 TTAAGCCATC
* * * **
63127010 AACCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCTTGAAGCT
1 AACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGACAGCCAATCTTACCTCCTTGAAGCT
*
63127075 GCAGCAGAATAGATTGAAGCTACAAGTGGCA
66 CCAGCAGAATAGATTGAAGCTACAAGTGGCA
* *
63127106 AACCTTATCTCCCTGAAGTTACAGTGGAGCAGGCTGAA-ATTA-CCAATTCTTACCTCCTTGAAG
1 AACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGA-CAGCCAA-TCTTACCTCCTTGAAG
* ** * *
63127169 TTCCAGTGGAGTAGATTGAAGTTACAA
64 CTCCAGCAGAATAGATTGAAGCTACAA
63127196 ATCTCTTCTC
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
95 4 0.05
96 71 0.95
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (96 bp):
AACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGACAGCCAATCTTACCTCCTTGAAGCT
CCAGCAGAATAGATTGAAGCTACAAGTGGCA
Found at i:63127349 original size:45 final size:45
Alignment explanation
Indices: 63127109--63127341 Score: 204
Period size: 44 Copynumber: 5.2 Consensus size: 45
63127099 AGTGGCAAAC
**
63127109 CTTATCTCCCTGAAGTTACAGTGGAGCAGGCTGAAATTACCAATT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAATTACCAATT
* * * * * *
63127154 CTTACCTCCTTGAAGTTCCAGTGGAGTAGATTGAAGTTA-CAAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAATTACCAATT
* * ** *
63127198 CTCT-TCTCCCTGAAATTACATTGGAGCAGATTGAAGCTA-CAATC
1 CT-TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAATTACCAATT
** * * * * **
63127242 CTTATCTTTCTGAAGTTGCAGTAGAGCAGGA-TAAAAATACACAAAC
1 CTTATCTCCCTGAAGTTACAGTGGAGCA-GATTGAAATTAC-CAATT
* *
63127288 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAATTACCAATT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAATTACCAATT
63127333 CTTATCTCC
1 CTTATCTCC
63127342 TTTAAGTTTT
Statistics
Matches: 147, Mismatches: 35, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
43 1 0.01
44 62 0.42
45 49 0.33
46 35 0.24
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAATTACCAATT
Found at i:63127445 original size:179 final size:179
Alignment explanation
Indices: 63127104--63127445 Score: 445
Period size: 179 Copynumber: 1.9 Consensus size: 179
63127094 CTACAAGTGG
*
63127104 CAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGGCTGAAATTACCAATTCTTACCTCCTTGAAG
1 CAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAATTACCAATTCTTACCTCCTTGAAG
* * ** * *
63127169 TTCCAGTGGAGTAGATTGAAGTTACAAATCTCTTCTCCCTGAAATTACATTGGAGCAGATTGAAG
66 TTCCAGCGGAGTAGATCGAAACTACAAATCTCTTCTCCCTGAAATTACATCGGAGCAGATCGAAG
* * * * * *
63127234 CTACAATCCTTATCTTTCTGAAGTTGCAGTAGAGCAGGATAAAAATACA
131 CGACAATCCTTAACCTTCTAAAGATACAGTAGAGCAGGATAAAAATACA
* * * * *
63127283 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAATTACCAATTCTTATCTCCTTTAAG
1 CAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAATTACCAATTCTTACCTCCTTGAAG
** * *
63127348 TTTTAGCGGAGTAGATCGAAACTACAAATCTCTTTTCCCTGAAATTACATCGGAGCGGATCGAAG
66 TTCCAGCGGAGTAGATCGAAACTACAAATCTCTTCTCCCTGAAATTACATCGGAGCAGATCGAAG
*
63127413 CGCCAATTCC-TACACCTT-TAAAGATACAGTAGA
131 CGACAA-TCCTTA-ACCTTCTAAAGATACAGTAGA
63127446 TTGGAACGAG
Statistics
Matches: 138, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
179 132 0.96
180 6 0.04
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (179 bp):
CAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAATTACCAATTCTTACCTCCTTGAAG
TTCCAGCGGAGTAGATCGAAACTACAAATCTCTTCTCCCTGAAATTACATCGGAGCAGATCGAAG
CGACAATCCTTAACCTTCTAAAGATACAGTAGAGCAGGATAAAAATACA
Found at i:63129041 original size:16 final size:16
Alignment explanation
Indices: 63129020--63129060 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
63129010 TTATCTATTG
63129020 TTCTTTCATTTTTTTC
1 TTCTTTCATTTTTTTC
63129036 TTCTTT--TTTTTTTC
1 TTCTTTCATTTTTTTC
*
63129050 -TCTTGCATTTT
1 TTCTTTCATTTT
63129061 ATCGATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
13 4 0.18
14 8 0.36
15 4 0.18
16 6 0.27
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (16 bp):
TTCTTTCATTTTTTTC
Done.