Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 202 of 325
Found at i:63129228 original size:12 final size:13
Alignment explanation
Indices: 63129213--63129256 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
63129203 ATATTGTTCA
*
63129213 TATTATTACTAT-
1 TATTATTATTATC
63129225 TATTATT-TTATC
1 TATTATTATTATC
63129237 TATTATTATTATC
1 TATTATTATTATC
*
63129250 TTTTATT
1 TATTATT
63129257 TATATATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 3 0.11
12 14 0.50
13 11 0.39
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTATTATTATC
Found at i:63129258 original size:24 final size:24
Alignment explanation
Indices: 63129212--63129264 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
63129202 TATATTGTTC
63129212 ATATTATTACTATTATTATTTTAT
1 ATATTATTACTATTATTATTTTAT
* * *
63129236 CTATTATTATTATCTTTTA-TTTAT
1 ATATTATTACTAT-TATTATTTTAT
63129260 ATATT
1 ATATT
63129265 TCACTACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (24 bp):
ATATTATTACTATTATTATTTTAT
Found at i:63129657 original size:19 final size:17
Alignment explanation
Indices: 63129624--63129658 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
63129614 TGATATTATT
63129624 CAAAAAAGGAAGGTTTC
1 CAAAAAAGGAAGGTTTC
63129641 CAAAATAAGGCAAGGTTT
1 CAAAA-AAGG-AAGGTTT
63129659 TGAACTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 7 0.44
ACGTcount: A:0.46, C:0.11, G:0.23, T:0.20
Consensus pattern (17 bp):
CAAAAAAGGAAGGTTTC
Found at i:63132600 original size:27 final size:27
Alignment explanation
Indices: 63132570--63132657 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
63132560 AGGTTATCCC
*
63132570 TTCATATTTCGCCACAAAGGCTACTCT
1 TTCATATTTCGCCACAAAGGATACTCT
* *
63132597 TTCATATTTTGCAACAAAGGATACTCT
1 TTCATATTTCGCCACAAAGGATACTCT
* * * *
63132624 TACATATTGCACCACAAAGGAGTTC-CT
1 TTCATATTTCGCCACAAAGGA-TACTCT
63132651 TTCATAT
1 TTCATAT
63132658 CGCACTACAA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
27 48 0.96
28 2 0.04
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (27 bp):
TTCATATTTCGCCACAAAGGATACTCT
Found at i:63133940 original size:39 final size:39
Alignment explanation
Indices: 63133886--63133966 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
63133876 TTTGATTTCA
*
63133886 TTTGAAACTAGACTCATTAAGGAGTCTAAGCATATCAAT
1 TTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAAT
63133925 TTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAAT
1 TTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAAT
63133964 TTT
1 TTT
63133967 ATCTTATAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (39 bp):
TTTGAAACTAGACTCATTAAGGAGTCTAAGCATATAAAT
Found at i:63134830 original size:26 final size:26
Alignment explanation
Indices: 63134801--63134860 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
63134791 TTCCTTTGAA
* * *
63134801 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
63134827 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
63134855 CCATTC
1 TCATTC
63134861 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:63134846 original size:28 final size:28
Alignment explanation
Indices: 63134815--63134886 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
63134805 TCGATATTTT
*
63134815 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
63134843 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
63134871 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
63134887 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:63139878 original size:28 final size:28
Alignment explanation
Indices: 63139844--63140055 Score: 140
Period size: 28 Copynumber: 7.5 Consensus size: 28
63139834 AACTGATCTT
*
63139844 GCACACACAGTGCTTGGTTACGAAACTC
1 GCACACACAGTGCTCGGTTACGAAACTC
**** *
63139872 GCACACACAGTGCCTCAACAACCG-ATCTC
1 GCACACACAGTG-CTCGGTTA-CGAAACTC
**
63139901 GCACACACAGTGCTCGGTTACGGGACTC
1 GCACACACAGTGCTCGGTTACGAAACTC
**** * *
63139929 GCACACACAGTGCCTCAACAACCAATCTC
1 GCACACACAGTG-CTCGGTTACGAAACTC
* *
63139958 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGAAACTC
* **** *
63139986 GCACGCACAGTGCCTCAACAACCG-ATCTC
1 GCACACACAGTG-CTCGGTTA-CGAAACTC
* *
63140015 GCACACACAATGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGAAACTC
*
63140043 ACACACACAGTGC
1 GCACACACAGTGC
63140056 CTATGTTCAC
Statistics
Matches: 133, Mismatches: 44, Indels: 14
0.70 0.23 0.07
Matches are distributed among these distances:
27 4 0.03
28 69 0.52
29 56 0.42
30 4 0.03
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.17
Consensus pattern (28 bp):
GCACACACAGTGCTCGGTTACGAAACTC
Found at i:63139884 original size:57 final size:57
Alignment explanation
Indices: 63139814--63140057 Score: 371
Period size: 57 Copynumber: 4.2 Consensus size: 57
63139804 GATCTCATTT
* * * * *
63139814 CACACACTTAGTGCCCCAACAACTGATCTTGCACACACAGTGCTTGGTTACGAAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
63139873 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGGACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
63139930 CACACACAGTGCCTCAACAACCAATCTCGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* * *
63139987 CACGCACAGTGCCTCAACAACCGATCTCGCACACACAATGCTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
63140044 CACACACAGTGCCT
1 CACACACAGTGCCT
63140058 ATGTTCACTT
Statistics
Matches: 170, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
57 163 0.96
59 7 0.04
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.18
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:63139910 original size:29 final size:29
Alignment explanation
Indices: 63139869--63140023 Score: 154
Period size: 29 Copynumber: 5.4 Consensus size: 29
63139859 GGTTACGAAA
63139869 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
**** *
63139898 CTCGCACACACAGTG-CTCGGTTACGGGA-
1 CTCGCACACACAGTGCCTCAACAAC-CGAT
*
63139926 CTCGCACACACAGTGCCTCAACAACCAAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
***** * *
63139955 CTCGCACACACAGTG-CTTGGTTACGGAA
1 CTCGCACACACAGTGCCTCAACAACCGAT
*
63139983 CTCGCACGCACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
63140012 CTCGCACACACA
1 CTCGCACACACA
63140024 ATGCTCGGTT
Statistics
Matches: 94, Mismatches: 28, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
28 40 0.43
29 54 0.57
ACGTcount: A:0.28, C:0.38, G:0.18, T:0.15
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAACAACCGAT
Found at i:63141995 original size:26 final size:26
Alignment explanation
Indices: 63141966--63142025 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
63141956 TCCCTTTGAA
* * *
63141966 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
63141992 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
63142020 CCATTC
1 TCATTC
63142026 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:63142011 original size:28 final size:28
Alignment explanation
Indices: 63141980--63142041 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
63141970 TCGATATTTT
*
63141980 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
63142008 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
63142036 GTACAC
1 GCACAC
63142042 AGTACCATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:63153503 original size:42 final size:41
Alignment explanation
Indices: 63153444--63153608 Score: 172
Period size: 42 Copynumber: 3.9 Consensus size: 41
63153434 TTAGGGTTAC
** *
63153444 TGAGACTATGTGTAAGACCATATCTGGGATATGGCATCAAT
1 TGAGACTACATGTAAGACCATATCTGGGATATGGCATCGAT
*
63153485 GTGAGACTACGTGTAAGACCATATC-GGGAATATGGCATCGAT
1 -TGAGACTACATGTAAGACCATATCTGGG-ATATGGCATCGAT
* *
63153527 ATGAGACTTCATGTAAGACCATA-CTTGGGCTATTGGCATCGAT
1 -TGAGACTACATGTAAGACCATATC-TGGGATA-TGGCATCGAT
* * *
63153570 TACAAGATTACATGTAAGACCATATCTGGAATATGGCAT
1 T--GAGACTACATGTAAGACCATATCTGGGATATGGCAT
63153609 TGGTACGGTA
Statistics
Matches: 105, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
41 4 0.04
42 58 0.55
43 19 0.18
44 23 0.22
45 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (41 bp):
TGAGACTACATGTAAGACCATATCTGGGATATGGCATCGAT
Found at i:63157194 original size:27 final size:27
Alignment explanation
Indices: 63157164--63157341 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
63157154 ATATTGAGCC
* * *
63157164 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
63157191 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
63157218 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
63157246 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
63157273 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
63157300 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
63157327 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63157342 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:63157257 original size:55 final size:55
Alignment explanation
Indices: 63157164--63157341 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
63157154 ATATTGAGCC
* * *
63157164 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
63157218 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
63157273 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
63157327 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63157342 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:63157303 original size:82 final size:81
Alignment explanation
Indices: 63157185--63157340 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
63157175 TGCTATACAA
* * *
63157185 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
63157250 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
63157267 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
63157331 CACTTAGTGC
65 CACTTAGTGC
63157341 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63159312 original size:24 final size:24
Alignment explanation
Indices: 63159263--63159313 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
63159253 TGCTTTGTTT
**
63159263 TAATTTAATTAAACTTTTATTTTA
1 TAATTTAATTAAACTTTTATAATA
**
63159287 TAATTTAATTAATGTTTTATAATA
1 TAATTTAATTAAACTTTTATAATA
63159311 TAA
1 TAA
63159314 AAACATATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (24 bp):
TAATTTAATTAAACTTTTATAATA
Found at i:63165892 original size:41 final size:40
Alignment explanation
Indices: 63165831--63166020 Score: 218
Period size: 41 Copynumber: 4.7 Consensus size: 40
63165821 ACCAAAGTCT
* *
63165831 AAACAGGGGCACGTATGTGCAATTCAGGCGTATCGAAGTAT
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTA-CGAAGTAC
* * * *
63165872 AAATAGGGGCATGCATGTGCAATTAAGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTA-CGAAGTAC
*
63165913 AAACAGGGGCACATATGTGCAATTCAGGGGTACTGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTAC-GAAGTAC
* * * * *
63165954 AAATAGAGGCATGTATGTGTAATTCAGGGGTACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTA-CGAAGTAC
* *
63165995 AAACATGGGCACGTACGTGCAATTCA
1 AAACAGGGGCACGTATGTGCAATTCA
63166021 ACAATATTCT
Statistics
Matches: 123, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
40 1 0.01
41 121 0.98
42 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.21
Consensus pattern (40 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGTACGAAGTAC
Found at i:63165972 original size:82 final size:82
Alignment explanation
Indices: 63165820--63166020 Score: 280
Period size: 82 Copynumber: 2.5 Consensus size: 82
63165810 GATTCGGAAT
* *
63165820 TACCAAAGT-CTAAACAGGGGCACGTATGTGCAATTCAGGCGTATCGAAGTATAAATAGGGGCAT
1 TACCAAAGTAC-AAACAGGGGCACGTATGTGCAATTCAGGCGTATCGAAGTACAAATAGAGGCAT
63165884 GCATGTGCAATTAAGGGG
65 GCATGTGCAATTAAGGGG
* * *
63165902 TACCGAAGTACAAACAGGGGCACATATGTGCAATTCAGGGGTA-CTGAAGTACAAATAGAGGCAT
1 TACCAAAGTACAAACAGGGGCACGTATGTGCAATTCAGGCGTATC-GAAGTACAAATAGAGGCAT
* * *
63165966 GTATGTGTAATTCAGGGG
65 GCATGTGCAATTAAGGGG
* *
63165984 TACCAAAGTACAAACATGGGCACGTACGTGCAATTCA
1 TACCAAAGTACAAACAGGGGCACGTATGTGCAATTCA
63166021 ACAATATTCT
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
81 1 0.01
82 103 0.98
83 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.21
Consensus pattern (82 bp):
TACCAAAGTACAAACAGGGGCACGTATGTGCAATTCAGGCGTATCGAAGTACAAATAGAGGCATG
CATGTGCAATTAAGGGG
Found at i:63166748 original size:15 final size:15
Alignment explanation
Indices: 63166728--63166756 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63166718 GAAGATGATA
63166728 TTTTCTTTTTCTTTC
1 TTTTCTTTTTCTTTC
63166743 TTTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
63166757 ACTGTTTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTCTTTTTCTTTC
Found at i:63167342 original size:21 final size:21
Alignment explanation
Indices: 63167316--63167356 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
63167306 TGAGTGATAG
63167316 AAGAGAGTGGTTTCATAACCA
1 AAGAGAGTGGTTTCATAACCA
63167337 AAGAGAGTGGTTTCATAACC
1 AAGAGAGTGGTTTCATAACC
63167357 CCACGGCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (21 bp):
AAGAGAGTGGTTTCATAACCA
Found at i:63170920 original size:23 final size:23
Alignment explanation
Indices: 63170890--63170938 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
63170880 AAATTATATA
*
63170890 AATAAAGGGTCAGTAGGCACTCT
1 AATAAAGGGACAGTAGGCACTCT
63170913 AATAAAGGGACAGTAGGCACTCT
1 AATAAAGGGACAGTAGGCACTCT
63170936 AAT
1 AAT
63170939 GCTAAGAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.20
Consensus pattern (23 bp):
AATAAAGGGACAGTAGGCACTCT
Found at i:63172158 original size:104 final size:104
Alignment explanation
Indices: 63171978--63172186 Score: 400
Period size: 104 Copynumber: 2.0 Consensus size: 104
63171968 GTTAGATAAA
*
63171978 CAACTATTGTAAAGAGACTTTTGATGAAATTGTCAATTAGGGACTTAATTGAAAAATAAAAAATT
1 CAACTATTGTAAAGAGACTTTTGATGAAATTGTCAATTAGGGACTAAATTGAAAAATAAAAAATT
63172043 ACATGGTGAAATTGTGAAATAAATGAAACATAGGCCATG
66 ACATGGTGAAATTGTGAAATAAATGAAACATAGGCCATG
*
63172082 CAACTATTGTAAAGAGATTTTTGATGAAATTGTCAATTAGGGACTAAATTGAAAAATAAAAAATT
1 CAACTATTGTAAAGAGACTTTTGATGAAATTGTCAATTAGGGACTAAATTGAAAAATAAAAAATT
63172147 ACATGGTGAAATTGTGAAATAAATGAAACATAGGCCATG
66 ACATGGTGAAATTGTGAAATAAATGAAACATAGGCCATG
63172186 C
1 C
63172187 TAGGGACCTA
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.44, C:0.09, G:0.18, T:0.29
Consensus pattern (104 bp):
CAACTATTGTAAAGAGACTTTTGATGAAATTGTCAATTAGGGACTAAATTGAAAAATAAAAAATT
ACATGGTGAAATTGTGAAATAAATGAAACATAGGCCATG
Found at i:63172745 original size:25 final size:25
Alignment explanation
Indices: 63172672--63172737 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
63172662 TCCACCACTC
* *
63172672 GTGAGAGCATACTAATTTATAGATT
1 GTGAGAGCATACTGATTTATAGCTT
63172697 GTGAGAGCATACTGATTTATAGCTT
1 GTGAGAGCATACTGATTTATAGCTT
63172722 GTGAGAGCATACTGAT
1 GTGAGAGCATACTGAT
63172738 CTGCAGCTCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (25 bp):
GTGAGAGCATACTGATTTATAGCTT
Found at i:63178059 original size:43 final size:43
Alignment explanation
Indices: 63177998--63178115 Score: 200
Period size: 43 Copynumber: 2.7 Consensus size: 43
63177988 ACCGTGTGTT
* *
63177998 CCTACTTCAAATTCCCACATGGCTTGAGACACGACTGTTTGTC
1 CCTACTTCAAATGCCCACATGGCCTGAGACACGACTGTTTGTC
63178041 CCTACTTCAAATGCCCACATGGCCTGAGACACGACTGTTTGTC
1 CCTACTTCAAATGCCCACATGGCCTGAGACACGACTGTTTGTC
* *
63178084 CCTACTTCAAATGCCCACACGACCTGAGACAC
1 CCTACTTCAAATGCCCACATGGCCTGAGACAC
63178116 AGGCGTGTCT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (43 bp):
CCTACTTCAAATGCCCACATGGCCTGAGACACGACTGTTTGTC
Found at i:63182792 original size:47 final size:48
Alignment explanation
Indices: 63182720--63182855 Score: 184
Period size: 47 Copynumber: 2.9 Consensus size: 48
63182710 ACCAATATGT
* * *
63182720 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATTGATCTAC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAC
**
63182768 GATCCCAT-TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAC
* * * *
63182815 GATCCGATGTAAGACCATATCTGAGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
63182856 CTACCATGTG
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 41 0.53
48 37 0.47
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAC
Found at i:63201838 original size:23 final size:22
Alignment explanation
Indices: 63201807--63201850 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
63201797 TTGATCGTAT
*
63201807 GTTTAGGTATGATTTTAGTTTAA
1 GTTTAGGTATGAATTTA-TTTAA
*
63201830 GTTTTGGTATGAATTTATTTA
1 GTTTAGGTATGAATTTATTTA
63201851 TGAATTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTAGGTATGAATTTATTTAA
Found at i:63203832 original size:38 final size:37
Alignment explanation
Indices: 63203776--63203853 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 37
63203766 ATATTTGATG
* * *
63203776 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAT
1 TATATCCAGGTTAAATCCCGCAAGCTTCGTGCTGGT-T
**
63203814 TATATCCAGGTTTTATCCCGCAAGCTTCGTGCTGGTT
1 TATATCCAGGTTAAATCCCGCAAGCTTCGTGCTGGTT
63203851 TAT
1 TAT
63203854 CCCGCAGGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
37 4 0.11
38 31 0.89
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (37 bp):
TATATCCAGGTTAAATCCCGCAAGCTTCGTGCTGGTT
Found at i:63203855 original size:24 final size:24
Alignment explanation
Indices: 63203825--63203878 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
63203815 ATATCCAGGT
*
63203825 TTTATCCCGCAAGCTTCGTGCTGG
1 TTTATCCCGCAAGCTTCATGCTGG
*
63203849 TTTATCCCGCAGGCTTCATGCTGG
1 TTTATCCCGCAAGCTTCATGCTGG
63203873 TATTAT
1 T-TTAT
63203879 ATCCGGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (24 bp):
TTTATCCCGCAAGCTTCATGCTGG
Found at i:63203894 original size:62 final size:63
Alignment explanation
Indices: 63203790--63203916 Score: 175
Period size: 62 Copynumber: 2.0 Consensus size: 63
63203780 TCCGGGTTAA
* * ** **
63203790 ATCCCGCAGGCTTCGTGTTGGTATTATATCCAGGTTTTATCCCGCAAGCTTCGTGCTGGT-TT
1 ATCCCGCAGGCTTCATGCTGGTATTATATCCAGGTTAAATCCCGCAAGCTTAATGCTGGTATT
* *
63203852 ATCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGTATT
1 ATCCCGCAGGCTTCATGCTGGTATTATATCCAGGTTAAATCCCGCAAGCTTAATGCTGGTATT
63203915 AT
1 AT
63203917 ATCTGGGTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
62 52 0.93
63 4 0.07
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (63 bp):
ATCCCGCAGGCTTCATGCTGGTATTATATCCAGGTTAAATCCCGCAAGCTTAATGCTGGTATT
Found at i:63203908 original size:38 final size:38
Alignment explanation
Indices: 63203852--63203956 Score: 174
Period size: 38 Copynumber: 2.8 Consensus size: 38
63203842 GTGCTGGTTT
*
63203852 ATCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAA
1 ATCCCGCAGGCTTAATGCTGGTATTATATCCGGGTTAA
*
63203890 ATCCCGCAGGCTTAATGCTGGTATTATATCTGGGTTAA
1 ATCCCGCAGGCTTAATGCTGGTATTATATCCGGGTTAA
* *
63203928 ATCTCGCAGGCTTAGTGCTGGTATTATAT
1 ATCCCGCAGGCTTAATGCTGGTATTATAT
63203957 TCGAGCTTAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (38 bp):
ATCCCGCAGGCTTAATGCTGGTATTATATCCGGGTTAA
Found at i:63208689 original size:24 final size:24
Alignment explanation
Indices: 63208657--63208712 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
63208647 GTCGAGAATC
63208657 AACAGGTGTTGTCCCTTGCGCGGG
1 AACAGGTGTTGTCCCTTGCGCGGG
63208681 AACAGGTGTTGTCCCTTGCGCGGG
1 AACAGGTGTTGTCCCTTGCGCGGG
*
63208705 AGCAGGTG
1 AACAGGTG
63208713 CTATACCCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.14, C:0.23, G:0.39, T:0.23
Consensus pattern (24 bp):
AACAGGTGTTGTCCCTTGCGCGGG
Found at i:63208965 original size:18 final size:18
Alignment explanation
Indices: 63208944--63208978 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63208934 GAGGCATTAT
63208944 CAAACAAAAACACATTTC
1 CAAACAAAAACACATTTC
**
63208962 CAAACAACCACACATTT
1 CAAACAAAAACACATTT
63208979 ATACAAGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.17
Consensus pattern (18 bp):
CAAACAAAAACACATTTC
Found at i:63210615 original size:56 final size:56
Alignment explanation
Indices: 63210552--63210684 Score: 248
Period size: 56 Copynumber: 2.4 Consensus size: 56
63210542 TCCCAGACAG
*
63210552 GGTCTTACTCACACACATATATCGGAGTCACATATCAATGCCAACGTATAAAACAT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACAT
*
63210608 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACAT
63210664 GGTCTTACTCACACACATATA
1 GGTCTTACTCACACACATATA
63210685 ACGATGCCAT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACAT
Found at i:63212914 original size:21 final size:22
Alignment explanation
Indices: 63212875--63212915 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
63212865 CCGAATTGGT
63212875 CACACGGGCATGTTGCCCCTCC
1 CACACGGGCATGTTGCCCCTCC
*
63212897 CACACGGGCGTG-TGCCCCT
1 CACACGGGCATGTTGCCCCT
63212916 ATGTCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCATGTTGCCCCTCC
Found at i:63214708 original size:68 final size:68
Alignment explanation
Indices: 63214561--63214716 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
63214551 AGCCAATTTG
* * * * *
63214561 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
63214626 TATC
65 TATA
* *
63214630 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
63214692 ATATAGTA
62 ATATA-TA
63214700 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
63214717 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:63223228 original size:52 final size:52
Alignment explanation
Indices: 63223150--63223258 Score: 218
Period size: 52 Copynumber: 2.1 Consensus size: 52
63223140 TGAATCAAGC
63223150 TTCGGAAAGGCTAAACCCTAGCTTTCTTTTTTCTTTTCTTTCTTATTTATGT
1 TTCGGAAAGGCTAAACCCTAGCTTTCTTTTTTCTTTTCTTTCTTATTTATGT
63223202 TTCGGAAAGGCTAAACCCTAGCTTTCTTTTTTCTTTTCTTTCTTATTTATGT
1 TTCGGAAAGGCTAAACCCTAGCTTTCTTTTTTCTTTTCTTTCTTATTTATGT
63223254 TTCGG
1 TTCGG
63223259 CAAGAACAAG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.17, C:0.19, G:0.13, T:0.51
Consensus pattern (52 bp):
TTCGGAAAGGCTAAACCCTAGCTTTCTTTTTTCTTTTCTTTCTTATTTATGT
Found at i:63228060 original size:18 final size:18
Alignment explanation
Indices: 63227988--63228060 Score: 101
Period size: 18 Copynumber: 4.1 Consensus size: 18
63227978 CTTGGTCCAT
*
63227988 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGTAAATAG
* *
63228006 TGCAGTAACAATAACTAG
1 TGCAGTAACAGTAAATAG
* *
63228024 TGCAGTAATAGTAATTAG
1 TGCAGTAACAGTAAATAG
63228042 TGCAGTAACAGTAAATAG
1 TGCAGTAACAGTAAATAG
63228060 T
1 T
63228061 ATGCAAATCC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (18 bp):
TGCAGTAACAGTAAATAG
Found at i:63228433 original size:27 final size:27
Alignment explanation
Indices: 63228403--63228583 Score: 186
Period size: 27 Copynumber: 6.7 Consensus size: 27
63228393 GGCAAAATAA
63228403 TCATTTTACCTCATAAGGGAAAAACTT
1 TCATTTTACCTCATAAGGGAAAAACTT
*
63228430 TCATTTTACCTCATAAGGGAAAAA-TCG
1 TCATTTTACCTCATAAGGGAAAAACT-T
* * * *
63228457 TCATTTTATCACATAAGGGCAAAACAGT
1 TCATTTTACCTCATAAGGGAAAAAC-TT
* * * **
63228485 T-ATTTTGCCACATAAGGGCAAAACCG
1 TCATTTTACCTCATAAGGGAAAAACTT
*
63228511 TCATTTTACCTCATAAGGGAAAAATTT
1 TCATTTTACCTCATAAGGGAAAAACTT
* * * *
63228538 TCATTTTATCACATAAGGGCAAAACTA
1 TCATTTTACCTCATAAGGGAAAAACTT
*
63228565 TCATTTTATCTCATAAGGG
1 TCATTTTACCTCATAAGGG
63228584 TTCAGGTACG
Statistics
Matches: 128, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.02
27 125 0.98
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.31
Consensus pattern (27 bp):
TCATTTTACCTCATAAGGGAAAAACTT
Found at i:63228461 original size:54 final size:53
Alignment explanation
Indices: 63228403--63228583 Score: 220
Period size: 54 Copynumber: 3.4 Consensus size: 53
63228393 GGCAAAATAA
* *
63228403 TCATTTTACCTCATAAGGGAAAAACTTTCATTTTACCTCATAAGGGAAAAATCG
1 TCATTTTACCTCATAAGGGAAAAACTTTCATTTTACCACATAAGGGCAAAA-CG
* * * * *
63228457 TCATTTTATCACATAAGGGCAAAACAGTT-ATTTTGCCACATAAGGGCAAAACCG
1 TCATTTTACCTCATAAGGGAAAAAC-TTTCATTTTACCACATAAGGGCAAAA-CG
* * *
63228511 TCATTTTACCTCATAAGGGAAAAATTTTCATTTTATCACATAAGGGCAAAACTA
1 TCATTTTACCTCATAAGGGAAAAACTTTCATTTTACCACATAAGGGCAAAAC-G
*
63228565 TCATTTTATCTCATAAGGG
1 TCATTTTACCTCATAAGGG
63228584 TTCAGGTACG
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 3 0.03
54 102 0.95
55 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.31
Consensus pattern (53 bp):
TCATTTTACCTCATAAGGGAAAAACTTTCATTTTACCACATAAGGGCAAAACG
Found at i:63228571 original size:81 final size:81
Alignment explanation
Indices: 63228383--63228583 Score: 262
Period size: 81 Copynumber: 2.5 Consensus size: 81
63228373 ATACACATAC
* * * **
63228383 ATCATATATGGGCAAAA-TAATCATTTTACCTCATAAGGGAAAAACTTTCATTTTACCTCATAAG
1 ATCACATAAGGGCAAAACT-ATCATTTTACCACATAAGGGAAAAACCGTCATTTTACCTCATAAG
63228447 GGAAAAATCGTCATTTT
65 GGAAAAATCGTCATTTT
* * *
63228464 ATCACATAAGGGCAAAAC-AGTTATTTTGCCACATAAGGGCAAAACCGTCATTTTACCTCATAAG
1 ATCACATAAGGGCAAAACTA-TCATTTTACCACATAAGGGAAAAACCGTCATTTTACCTCATAAG
**
63228528 GGAAAAATTTTCATTTT
65 GGAAAAATCGTCATTTT
* *
63228545 ATCACATAAGGGCAAAACTATCATTTTATCTCATAAGGG
1 ATCACATAAGGGCAAAACTATCATTTTACCACATAAGGG
63228584 TTCAGGTACG
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
80 1 0.01
81 101 0.98
82 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (81 bp):
ATCACATAAGGGCAAAACTATCATTTTACCACATAAGGGAAAAACCGTCATTTTACCTCATAAGG
GAAAAATCGTCATTTT
Found at i:63231947 original size:27 final size:27
Alignment explanation
Indices: 63231908--63232101 Score: 230
Period size: 27 Copynumber: 7.2 Consensus size: 27
63231898 ACATACATCA
*
63231908 CATAGGGGCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
* *
63231935 CATAAGGGAAAAATCGTCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
* *
63231962 CATAAGGGCAAAATCA-TCATTTTATCA
1 CATAAGGGCAAAAT-AGTCATTTTACCT
* * *
63231989 CATAAGGGCAAAACAATCATTTTTCCAT
1 CATAAGGGCAAAATAGTCATTTTACC-T
**
63232017 -ATAAGGGCAAAACCGTCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
* * *
63232043 CATAAGGGCAAAATCGTCATTTTATCA
1 CATAAGGGCAAAATAGTCATTTTACCT
*
63232070 CATAAGGGCAAAATAGTCATTTTATCT
1 CATAAGGGCAAAATAGTCATTTTACCT
63232097 CATAA
1 CATAA
63232102 AGGTTCAGGT
Statistics
Matches: 144, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.01
27 142 0.99
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (27 bp):
CATAAGGGCAAAATAGTCATTTTACCT
Found at i:63231999 original size:81 final size:81
Alignment explanation
Indices: 63231904--63232101 Score: 308
Period size: 81 Copynumber: 2.4 Consensus size: 81
63231894 ATATACATAC
* *
63231904 ATCACATAGGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAATCGTCATTTTACCTCATAAGG
1 ATCACATAAGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAACCGTCATTTTACCTCATAAGG
63231969 GCAAAATCATCATTTT
66 GCAAAATCATCATTTT
* * * *
63231985 ATCACATAAGGGCAAAACAATCATTTTTCCAT-ATAAGGGCAAAACCGTCATTTTACCTCATAAG
1 ATCACATAAGGGCAAAATAGTCATTTTACC-TCATAAGGGAAAAACCGTCATTTTACCTCATAAG
*
63232049 GGCAAAATCGTCATTTT
65 GGCAAAATCATCATTTT
*
63232066 ATCACATAAGGGCAAAATAGTCATTTTATCTCATAA
1 ATCACATAAGGGCAAAATAGTCATTTTACCTCATAA
63232102 AGGTTCAGGT
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
80 1 0.01
81 102 0.98
82 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (81 bp):
ATCACATAAGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAACCGTCATTTTACCTCATAAGG
GCAAAATCATCATTTT
Found at i:63236326 original size:3 final size:3
Alignment explanation
Indices: 63236318--63236359 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
63236308 GGCATTCGGC
63236318 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
63236360 TATATATATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:63237732 original size:40 final size:39
Alignment explanation
Indices: 63237672--63237803 Score: 219
Period size: 40 Copynumber: 3.3 Consensus size: 39
63237662 GATAGATAAT
*
63237672 GTAAAATATATCCAGGTTAAATCCCGCAGGTTTTGTGCTG
1 GTAAAATATATCC-GGTTAAATCCCGCAGGCTTTGTGCTG
63237712 GTAAAATATATCCGGATTAAATCCCGCAGGCTTTGTGCTG
1 GTAAAATATATCCGG-TTAAATCCCGCAGGCTTTGTGCTG
*
63237752 GTAAAATATATCCGGGTTAAATCCCGCAAGCTTTGTGCTG
1 GTAAAATATATCC-GGTTAAATCCCGCAGGCTTTGTGCTG
63237792 GTAAAATATATC
1 GTAAAATATATC
63237804 TGGGTGATAA
Statistics
Matches: 88, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
39 2 0.02
40 84 0.95
41 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (39 bp):
GTAAAATATATCCGGTTAAATCCCGCAGGCTTTGTGCTG
Found at i:63238843 original size:27 final size:27
Alignment explanation
Indices: 63238804--63239000 Score: 191
Period size: 27 Copynumber: 7.3 Consensus size: 27
63238794 ACATACATCA
* *
63238804 CATAGGGGCAAAACTATCATTTTAACT
1 CATAAGGGCAAAACTATCATTTTACCT
* *
63238831 CATAAGGGAAAAACTATCATTTTGCCT
1 CATAAGGGCAAAACTATCATTTTACCT
* * * * * *
63238858 TATAAGGGCAAAATTGTTATTTTATCA
1 CATAAGGGCAAAACTATCATTTTACCT
* *
63238885 CATAAGGGCAAAAC-AGTCATTTTGCCA
1 CATAAGGGCAAAACTA-TCATTTTACCT
* *
63238912 CATAAGGGTAAAACCATCATTTTACCT
1 CATAAGGGCAAAACTATCATTTTACCT
* * *
63238939 CGTAAGGGCAAAACCT-TCATTTTATCA
1 CATAAGGGCAAAA-CTATCATTTTACCT
* *
63238966 CATAAGGGCAAAACAATCATTTTATCT
1 CATAAGGGCAAAACTATCATTTTACCT
63238993 CATAAGGG
1 CATAAGGG
63239001 TTCAGGTATG
Statistics
Matches: 137, Mismatches: 29, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 134 0.98
28 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.29
Consensus pattern (27 bp):
CATAAGGGCAAAACTATCATTTTACCT
Found at i:63238979 original size:54 final size:54
Alignment explanation
Indices: 63238802--63239000 Score: 211
Period size: 54 Copynumber: 3.7 Consensus size: 54
63238792 ACACATACAT
* * * *
63238802 CACATAGGGGCAAAACTATCATTTTAACTCATAAGGG-AAAAACTATCATTTTGC
1 CACATAAGGGCAAAACTATCATTTTATCTCATAAGGGCAAAACCT-TCATTTTAC
** * * * * ** *
63238856 CTTATAAGGGCAAAATTGTTATTTTATCACATAAGGGCAAAACAGTCATTTTGC
1 CACATAAGGGCAAAACTATCATTTTATCTCATAAGGGCAAAACCTTCATTTTAC
* * * * *
63238910 CACATAAGGGTAAAACCATCATTTTACCTCGTAAGGGCAAAACCTTCATTTTAT
1 CACATAAGGGCAAAACTATCATTTTATCTCATAAGGGCAAAACCTTCATTTTAC
*
63238964 CACATAAGGGCAAAACAATCATTTTATCTCATAAGGG
1 CACATAAGGGCAAAACTATCATTTTATCTCATAAGGG
63239001 TTCAGGTATG
Statistics
Matches: 115, Mismatches: 29, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
54 111 0.97
55 4 0.03
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (54 bp):
CACATAAGGGCAAAACTATCATTTTATCTCATAAGGGCAAAACCTTCATTTTAC
Found at i:63239001 original size:81 final size:81
Alignment explanation
Indices: 63238800--63239001 Score: 262
Period size: 81 Copynumber: 2.5 Consensus size: 81
63238790 ATACACATAC
* * * * * *
63238800 ATCACATAGGGGCAAAACTATCATTTTAACTCATAAGGGAAAAACTATCATTTTGCCTTATAAGG
1 ATCACATAAGGGCAAAACAATCATTTTAACTCATAAGGGTAAAACCATCATTTTACCTCATAAGG
* *
63238865 GCAAAATTGTTATTTT
66 GCAAAACTGTCATTTT
* ** * *
63238881 ATCACATAAGGGCAAAACAGTCATTTTGCCACATAAGGGTAAAACCATCATTTTACCTCGTAAGG
1 ATCACATAAGGGCAAAACAATCATTTTAACTCATAAGGGTAAAACCATCATTTTACCTCATAAGG
63238946 GCAAAACCT-TCATTTT
66 GCAAAA-CTGTCATTTT
*
63238962 ATCACATAAGGGCAAAACAATCATTTTATCTCATAAGGGT
1 ATCACATAAGGGCAAAACAATCATTTTAACTCATAAGGGT
63239002 TCAGGTATGC
Statistics
Matches: 103, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 102 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (81 bp):
ATCACATAAGGGCAAAACAATCATTTTAACTCATAAGGGTAAAACCATCATTTTACCTCATAAGG
GCAAAACTGTCATTTT
Found at i:63240960 original size:77 final size:77
Alignment explanation
Indices: 63240838--63241012 Score: 280
Period size: 77 Copynumber: 2.3 Consensus size: 77
63240828 ATACGAAGGA
* *
63240838 CTATTATCATGGCCTGAAGCCAAACCATCCAATATGCATGTCCCGAAGCCAAATCGGTATAATAC
1 CTATTATCATGGCCCGAAGCCAAACCATCCAATATGCATGGCCCGAAGCCAAATCGGTATAATAC
63240903 ACA-CTCGAAGTG
66 ACAGCT-GAAGTG
* * *
63240915 CTATTATCATGGCCCAAAGCCAAACCATCCGATATGCATGGCCCGAAGCCAAATCTGTATAATAC
1 CTATTATCATGGCCCGAAGCCAAACCATCCAATATGCATGGCCCGAAGCCAAATCGGTATAATAC
63240980 ACAGCTGAAGTG
66 ACAGCTGAAGTG
*
63240992 CTAATATCATGGCCCGAAGCC
1 CTATTATCATGGCCCGAAGCC
63241013 TAATCAACAT
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
77 88 0.98
78 2 0.02
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (77 bp):
CTATTATCATGGCCCGAAGCCAAACCATCCAATATGCATGGCCCGAAGCCAAATCGGTATAATAC
ACAGCTGAAGTG
Found at i:63247177 original size:42 final size:42
Alignment explanation
Indices: 63247108--63247225 Score: 112
Period size: 44 Copynumber: 2.8 Consensus size: 42
63247098 GTAGTAAAAT
* * * * *
63247108 ATCGATACCACTGTCCCAGACAGGGTCTTACATGAAATCATAT
1 ATCGATGCCAATGTCCCAGATATGGTCTTACAT-AAATCATAA
* *
63247151 A-CGATGCCAATGTCCCAGTTATGGTCTTACACATAAGTCATAA
1 ATCGATGCCAATGTCCCAGATATGGTCTT--ACATAAATCATAA
* * *
63247194 ATTGATGGCAATGTCCCAGATGTGGTCTTACA
1 ATCGATGCCAATGTCCCAGATATGGTCTTACA
63247226 CGATAACACA
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
42 25 0.41
43 9 0.15
44 27 0.44
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (42 bp):
ATCGATGCCAATGTCCCAGATATGGTCTTACATAAATCATAA
Found at i:63248952 original size:12 final size:12
Alignment explanation
Indices: 63248932--63248961 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
63248922 TTAAGCTATT
*
63248932 ACACGGCCTAGC
1 ACACAGCCTAGC
63248944 ACACAGCCTAGC
1 ACACAGCCTAGC
63248956 ACACAG
1 ACACAG
63248962 GTGTGTGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.40, G:0.20, T:0.07
Consensus pattern (12 bp):
ACACAGCCTAGC
Found at i:63249757 original size:40 final size:40
Alignment explanation
Indices: 63249702--63249784 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
63249692 GCACATTTAG
63249702 TTGCACTTTAGGACATTTCATTAGTATTTTTCCTTAATCA
1 TTGCACTTTAGGACATTTCATTAGTATTTTTCCTTAATCA
63249742 TTGCACTTTAGGACATTTCATTAGTATTTTTCCTTAATCA
1 TTGCACTTTAGGACATTTCATTAGTATTTTTCCTTAATCA
63249782 TTG
1 TTG
63249785 TATTAGGAGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.48
Consensus pattern (40 bp):
TTGCACTTTAGGACATTTCATTAGTATTTTTCCTTAATCA
Found at i:63252111 original size:13 final size:13
Alignment explanation
Indices: 63252093--63252119 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63252083 ATGTCGTTCC
63252093 TTGGTAGAAAAGT
1 TTGGTAGAAAAGT
63252106 TTGGTAGAAAAGT
1 TTGGTAGAAAAGT
63252119 T
1 T
63252120 ATGCTTCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (13 bp):
TTGGTAGAAAAGT
Found at i:63256195 original size:29 final size:29
Alignment explanation
Indices: 63256153--63256227 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
63256143 TATATATGTG
* *
63256153 AATTATCCAGCACTAAGTGTGTGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
63256182 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
63256211 AACTATCGAGCACTAAG
1 AATTATCGAGCACTAAG
63256228 CGTTCGATCT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:63264632 original size:266 final size:266
Alignment explanation
Indices: 63264158--63264691 Score: 1032
Period size: 266 Copynumber: 2.0 Consensus size: 266
63264148 ATATTAATGA
*
63264158 ATGTTTAATTTGAATTTATGGCATGTATATTCTAGTATTTTTTATTGGTTGGATTTGAGTTGTAC
1 ATGTTTAATTTGAATTTATGGCATGTATAGTCTAGTATTTTTTATTGGTTGGATTTGAGTTGTAC
*
63264223 TTATGGAAGCCATGCAAAAATGGCTAAATGGCTGAATATGACGTTTAAACTTAAGTAAATTATGG
66 TTATGGAAGCCATGCAAAAATGGCTAAATGGCTAAATATGACGTTTAAACTTAAGTAAATTATGG
*
63264288 TTGATTTCATAATTAAGTAATGCTATAATATATAAATATATATGTGATGGAATTAATTTAGTATT
131 CTGATTTCATAATTAAGTAATGCTATAATATATAAATATATATGTGATGGAATTAATTTAGTATT
63264353 TTTGGTATATGCGAATGAATTCATGATCTGTTGGCATGGTTAGATTATGGATATATCATGCATAA
196 TTTGGTATATGCGAATGAATTCATGATCTGTTGGCATGGTTAGATTATGGATATATCATGCATAA
63264418 AAGTGG
261 AAGTGG
63264424 ATGTTTAATTTGAATTTATGGCATGTATAGTCTAGTATTTTTTATTGGTTGGATTTGAGTTGTAC
1 ATGTTTAATTTGAATTTATGGCATGTATAGTCTAGTATTTTTTATTGGTTGGATTTGAGTTGTAC
63264489 TTATGGAAGCCATGCAAAAATGGCTAAATGGCTAAATATGACGTTTAAACTTAAGTAAATTATGG
66 TTATGGAAGCCATGCAAAAATGGCTAAATGGCTAAATATGACGTTTAAACTTAAGTAAATTATGG
63264554 CTGATTTCATAATTAAGTAATGCTATAATATATAAATATATATGTGATGGAATTAATTTAGTATT
131 CTGATTTCATAATTAAGTAATGCTATAATATATAAATATATATGTGATGGAATTAATTTAGTATT
63264619 TTTGGTATATGCGAATGAATTCATGATCTGTTGGCATGGTTAGATTATGGATATATCATGCATAA
196 TTTGGTATATGCGAATGAATTCATGATCTGTTGGCATGGTTAGATTATGGATATATCATGCATAA
*
63264684 GAGTGG
261 AAGTGG
63264690 AT
1 AT
63264692 TGTTGATATG
Statistics
Matches: 264, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
266 264 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (266 bp):
ATGTTTAATTTGAATTTATGGCATGTATAGTCTAGTATTTTTTATTGGTTGGATTTGAGTTGTAC
TTATGGAAGCCATGCAAAAATGGCTAAATGGCTAAATATGACGTTTAAACTTAAGTAAATTATGG
CTGATTTCATAATTAAGTAATGCTATAATATATAAATATATATGTGATGGAATTAATTTAGTATT
TTTGGTATATGCGAATGAATTCATGATCTGTTGGCATGGTTAGATTATGGATATATCATGCATAA
AAGTGG
Found at i:63269786 original size:18 final size:18
Alignment explanation
Indices: 63269763--63269800 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
63269753 AATATATATT
63269763 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
63269781 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
63269799 AA
1 AA
63269801 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:63269793 original size:13 final size:13
Alignment explanation
Indices: 63269777--63269801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63269767 CAAGTACCCA
63269777 ACCCAACCCAATT
1 ACCCAACCCAATT
63269790 ACCCAACCCAAT
1 ACCCAACCCAAT
63269802 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:63269923 original size:18 final size:18
Alignment explanation
Indices: 63269902--63269942 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
63269892 GTAATTCGAG
63269902 TAATTCAGTTAATTTGAT
1 TAATTCAGTTAATTTGAT
* * *
63269920 TAATGCGGTTAATTTGGT
1 TAATTCAGTTAATTTGAT
63269938 TAATT
1 TAATT
63269943 TTATACTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.17, T:0.49
Consensus pattern (18 bp):
TAATTCAGTTAATTTGAT
Found at i:63269923 original size:27 final size:27
Alignment explanation
Indices: 63269866--63269933 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
63269856 TTTATACAAA
* *
63269866 TAATTCGGTTAATTTAGTTAACTTGGG
1 TAATTCGGTTAATTCAGTTAACTTGAG
* *
63269893 TAATTCGAG-TAATTCAGTTAATTTGAT
1 TAATTCG-GTTAATTCAGTTAACTTGAG
*
63269920 TAATGCGGTTAATT
1 TAATTCGGTTAATT
63269934 TGGTTAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.03
27 32 0.94
28 1 0.03
ACGTcount: A:0.29, C:0.07, G:0.19, T:0.44
Consensus pattern (27 bp):
TAATTCGGTTAATTCAGTTAACTTGAG
Found at i:63273963 original size:28 final size:27
Alignment explanation
Indices: 63273898--63273995 Score: 160
Period size: 28 Copynumber: 3.6 Consensus size: 27
63273888 ACATTAAGTC
* *
63273898 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
63273925 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAA-CT
63273953 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
63273981 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63273996 GTACAATTTA
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
27 23 0.34
28 42 0.63
29 2 0.03
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63274018 original size:29 final size:28
Alignment explanation
Indices: 63273897--63274020 Score: 144
Period size: 28 Copynumber: 4.4 Consensus size: 28
63273887 TACATTAAGT
* *
63273897 CCGCACACTCAGTGCTATATAATC-AAC
1 CCGCACACTTAGTGCTACATAATCAAAC
* *
63273924 TCGCACACTTAGTGCTACATAATCAAGC
1 CCGCACACTTAGTGCTACATAATCAAAC
*
63273952 TCGCACACTTAGTGCTACATAATCAAAC
1 CCGCACACTTAGTGCTACATAATCAAAC
* * *
63273980 TCGCACACTTAGTGCTGTACA-ATTTAAAC
1 CCGCACACTTAGTGC--TACATAATCAAAC
63274009 CCGCACACTTAG
1 CCGCACACTTAG
63274021 CGCCAATCTC
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
27 21 0.24
28 44 0.51
29 17 0.20
30 4 0.05
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (28 bp):
CCGCACACTTAGTGCTACATAATCAAAC
Found at i:63278261 original size:27 final size:26
Alignment explanation
Indices: 63278213--63278264 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63278203 GCGAGACTGT
*
63278213 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63278239 CAGATATTTGTGGCGAGGCCACCAGA
1 CAGATA-TTGTGACGAAGCCACCAGA
63278265 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63285725 original size:27 final size:26
Alignment explanation
Indices: 63285677--63285728 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63285667 GCGACGCTGC
*
63285677 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63285703 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
63285729 TTGTAATGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63291225 original size:18 final size:19
Alignment explanation
Indices: 63291177--63291219 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
63291167 CATTTGAATT
63291177 GTTATCAGAAAAATTTAGA
1 GTTATCAGAAAAATTTAGA
63291196 GTTATCAGAAAAATTTAGA
1 GTTATCAGAAAAATTTAGA
63291215 GTTAT
1 GTTAT
63291220 TAAAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.44, C:0.05, G:0.16, T:0.35
Consensus pattern (19 bp):
GTTATCAGAAAAATTTAGA
Found at i:63291928 original size:11 final size:11
Alignment explanation
Indices: 63291897--63291942 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
63291887 ATGAATATAA
63291897 CATGTGCATAT
1 CATGTGCATAT
*
63291908 CA--TACATAT
1 CATGTGCATAT
63291917 CATGTGCATAT
1 CATGTGCATAT
*
63291928 CATGT-CAAAT
1 CATGTGCATAT
63291938 CATGT
1 CATGT
63291943 ATATCAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.27
10 9 0.30
11 13 0.43
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:63292007 original size:25 final size:25
Alignment explanation
Indices: 63291979--63292026 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
63291969 ATAATTAAAC
*
63291979 CCTAGGGGTATAAT-GATCATTTTTA
1 CCTAGGGGTAAAATAG-TCATTTTTA
63292004 CCTAGGGGTAAAATAGTCATTTT
1 CCTAGGGGTAAAATAGTCATTTT
63292027 CCATATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (25 bp):
CCTAGGGGTAAAATAGTCATTTTTA
Found at i:63295524 original size:40 final size:39
Alignment explanation
Indices: 63295462--63295576 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 39
63295452 GATTTAGATT
* * *
63295462 TACCGGAGTATAAATAGGGCACATATGTGCAATCAGGGG
1 TACCGAAGTATAAAAAGGGCACATATGTGCAATCAAGGG
* * *
63295501 TACTGAAGTATAAAGAAGGGCACATATGTGCACTTAAGGG
1 TACCGAAGTATAAA-AAGGGCACATATGTGCAATCAAGGG
* *
63295541 TACCGAAGTACAAACAGGGGCACATATGTGCAATCA
1 TACCGAAGTATAAA-AAGGGCACATATGTGCAATCA
63295577 TAAAATAATT
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 12 0.19
40 51 0.81
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.20
Consensus pattern (39 bp):
TACCGAAGTATAAAAAGGGCACATATGTGCAATCAAGGG
Found at i:63297556 original size:13 final size:13
Alignment explanation
Indices: 63297538--63297562 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63297528 CCGAAACTAG
63297538 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
63297551 AAAGAAAAAAAA
1 AAAGAAAAAAAA
63297563 ATGCTCATCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:63298673 original size:40 final size:40
Alignment explanation
Indices: 63298623--63298750 Score: 177
Period size: 40 Copynumber: 3.2 Consensus size: 40
63298613 ACTAAGATCC
*
63298623 AAGGTATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCG
* * **
63298663 AAGGCCTTTGTGCGAGATACCAATTCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCG
* *
63298703 AAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTCCCG
63298743 AAGGCATT
1 AAGGCATT
63298751 GAATGAGTTA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCG
Found at i:63298771 original size:39 final size:39
Alignment explanation
Indices: 63298647--63298797 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
63298637 AGTTATTAAT
* ** * * *
63298647 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
63298687 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
63298727 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
63298767 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
63298798 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:63303161 original size:50 final size:49
Alignment explanation
Indices: 63303055--63303184 Score: 179
Period size: 50 Copynumber: 2.6 Consensus size: 49
63303045 CTGGTACGCA
* * * * ** *
63303055 TAGTAGCCTACACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
63303104 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
63303154 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
63303185 TCGAAGTTAT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 29 0.40
50 43 0.60
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:63303235 original size:99 final size:98
Alignment explanation
Indices: 63303055--63303236 Score: 231
Period size: 101 Copynumber: 1.8 Consensus size: 98
63303045 CTGGTACGCA
* * * * *
63303055 TAGTAGCCTACACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTACACATAGTACTACACACGCGACCAATTATCCGGTACACATAATAGCCTGAACCTA
63303120 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACAC-TGACCTAACCATCTGATACACG
* * * * * *
63303154 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAATAGCCTGAACC
1 TAGTAGCCTACACATAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAATAGCCTGAACC
63303219 TAGTACTACACA-TGACCT
64 TAGTACTACACACTGACCT
63303237 CACAATAGAT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
99 33 0.47
100 3 0.04
101 34 0.49
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (98 bp):
TAGTAGCCTACACATAGTACTACACACGCGACCAATTATCCGGTACACATAATAGCCTGAACCTA
GTACTACACACTGACCTAACCATCTGATACACG
Found at i:63304170 original size:11 final size:11
Alignment explanation
Indices: 63304154--63304186 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
63304144 CATAGACCTC
63304154 AAAATAATTAT
1 AAAATAATTAT
63304165 AAAATAATTAT
1 AAAATAATTAT
63304176 AAAATAATTAT
1 AAAATAATTAT
63304187 TTCTATCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AAAATAATTAT
Found at i:63304919 original size:15 final size:15
Alignment explanation
Indices: 63304874--63304920 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
63304864 AACAAGAAAA
*
63304874 CAGAATAAAGAAATC
1 CAGAATAAAGAAACC
63304889 CA-AGATAGAA-AAACC
1 CAGA-ATA-AAGAAACC
63304904 CAGAATAAAGAAACC
1 CAGAATAAAGAAACC
63304919 CA
1 CA
63304921 AGATACGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
14 3 0.11
15 21 0.78
16 3 0.11
ACGTcount: A:0.60, C:0.19, G:0.13, T:0.09
Consensus pattern (15 bp):
CAGAATAAAGAAACC
Found at i:63307968 original size:49 final size:49
Alignment explanation
Indices: 63307904--63308099 Score: 221
Period size: 49 Copynumber: 3.9 Consensus size: 49
63307894 TAGCTAAAGC
* * *
63307904 TATCTGGTACGCATAGTAGCTTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
63307953 TATCCGGTACACATAGTAGCTTGCACTTAGTACTACACATGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
* ** * * * *
63308003 CATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* *
63308054 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
63308100 TCACAATAGA
Statistics
Matches: 121, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
49 42 0.35
50 42 0.35
51 37 0.31
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:63308090 original size:101 final size:99
Alignment explanation
Indices: 63307917--63308100 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
63307907 CTGGTACGCA
* * *
63307917 TAGTAGCTTGCACATAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCTTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
63307982 GTACTACACATGTGACCTAACCATCTAATACACG
66 GTACTACACATGCGACCTAACCATCTAATACACG
* * * * *
63308016 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
63308081 TAGTACTACACATGCGACCT
64 TAGTACTACACATGCGACCT
63308101 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 27 0.36
100 3 0.04
101 44 0.59
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCGACCTAACCATCTAATACACG
Found at i:63313133 original size:40 final size:46
Alignment explanation
Indices: 63313062--63313147 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 46
63313052 AAAACAATGA
*
63313062 ATATACATATGTAATAATGATATACATAATATA-TATATA-AATAT
1 ATATAAATATGTAATAATGATATACATAATATACTATATATAATAT
*
63313106 ATATAAATA-GTAATAATG-T-TAGA-AATATACTATATATAATAT
1 ATATAAATATGTAATAATGATATACATAATATACTATATATAATAT
63313148 TTGAAATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
40 6 0.16
41 9 0.24
42 6 0.16
43 9 0.24
44 8 0.21
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.38
Consensus pattern (46 bp):
ATATAAATATGTAATAATGATATACATAATATACTATATATAATAT
Found at i:63313189 original size:19 final size:20
Alignment explanation
Indices: 63313151--63313189 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
63313141 ATAATATTTG
*
63313151 AAATATACATAAAGTAGTAA
1 AAATATACATAAACTAGTAA
*
63313171 AAATATATAT-AACTAGTAA
1 AAATATACATAAACTAGTAA
63313190 TGTTAAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (20 bp):
AAATATACATAAACTAGTAA
Found at i:63313485 original size:19 final size:18
Alignment explanation
Indices: 63313461--63313501 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
63313451 AATATATACC
*
63313461 TATATATATATTAAAGACA
1 TATATATATAATAAA-ACA
63313480 TATATATATAATAAAACA
1 TATATATATAATAAAACA
63313498 TATA
1 TATA
63313502 CTTAAGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (18 bp):
TATATATATAATAAAACA
Found at i:63313931 original size:22 final size:22
Alignment explanation
Indices: 63313870--63313934 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 22
63313860 TAAATACTAT
63313870 TAATATTAAAAAAATAACTTATTAA
1 TAATATTAAAAAAAT-A--TATTAA
* *
63313895 TAATATTACATAAATATATT-A
1 TAATATTAAAAAAATATATTAA
63313916 TAATATTAAAAAAAATATA
1 TAATATT-AAAAAAATATA
63313935 CGTCATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 8 0.23
22 13 0.37
24 1 0.03
25 13 0.37
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (22 bp):
TAATATTAAAAAAATATATTAA
Found at i:63314025 original size:15 final size:16
Alignment explanation
Indices: 63313990--63314031 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
63313980 AATATATTGA
*
63313990 TAATAAATAATAAGAG
1 TAATAAATAATAACAG
*
63314006 GAATAAA-AATAACAG
1 TAATAAATAATAACAG
63314021 TAATAATATAA
1 TAATAA-ATAA
63314032 ATAATAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 12 0.57
16 7 0.33
17 2 0.10
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.24
Consensus pattern (16 bp):
TAATAAATAATAACAG
Found at i:63315836 original size:86 final size:86
Alignment explanation
Indices: 63315746--63315957 Score: 261
Period size: 89 Copynumber: 2.4 Consensus size: 86
63315736 GCATGAGCCA
* * *
63315746 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAT-A-TG-ATAATAGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-AGATAATTGAAAAAAAGAAATT
63315808 GAAAAAACCTC-GACATGTGACCCG
65 GAAAAAACCTCAG-C--GTGACCCG
* *
63315832 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAAAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGAT-AATTG--AAAAAAAGAAA
* * *
63315897 TTGAAAATACCTCAGCGTGTCCTG
63 TTGAAAAAACCTCAGCGTGACCCG
63315921 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
63315958 TTGATGAACA
Statistics
Matches: 110, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
85 3 0.03
86 41 0.37
87 1 0.01
88 2 0.02
89 42 0.38
91 20 0.18
92 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGATAATTGAAAAAAAGAAATTG
AAAAAACCTCAGCGTGACCCG
Found at i:63316015 original size:75 final size:75
Alignment explanation
Indices: 63315892--63316036 Score: 274
Period size: 75 Copynumber: 1.9 Consensus size: 75
63315882 TGAAAAAAAA
63315892 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
63315957 TTTGATGAAC
66 TTTGATGAAC
63315967 AGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
63316031 TTTTGA
65 TTTTGA
63316037 AACACATAAA
Statistics
Matches: 69, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
74 4 0.06
75 65 0.94
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (75 bp):
AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTGATGAAC
Found at i:63316048 original size:75 final size:75
Alignment explanation
Indices: 63315892--63316053 Score: 265
Period size: 75 Copynumber: 2.2 Consensus size: 75
63315882 TGAAAAAAAA
*
63315892 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
63315957 TTTGATGAAC
66 TTTGATAAAC
63315967 AGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTCAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
63316031 TTTTGA-AACAC
65 TTTTGATAA-AC
*
63316042 ATAAATTCAAAA
1 AGAAATTCAAAA
63316054 GCAGAAATTG
Statistics
Matches: 82, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
74 5 0.06
75 73 0.89
76 4 0.05
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (75 bp):
AGAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTGATAAAC
Found at i:63325074 original size:43 final size:43
Alignment explanation
Indices: 63324919--63325111 Score: 219
Period size: 43 Copynumber: 4.5 Consensus size: 43
63324909 AGACCAGGAC
* * * * * *
63324919 CTTTTTTAAAAAATGCCGCTAGAAACCAGGACCTTTAGCGGCG
1 CTTTTATAAAAAACGCCGCTATAGACCTGTACCTTTAGCGGCG
*
63324962 CTTTTAT-AAAAACGCCGCTATAGACCTGTACTTTTAGCGGCG
1 CTTTTATAAAAAACGCCGCTATAGACCTGTACCTTTAGCGGCG
* * * * *
63325004 CTTTTATAAAAAAACACTGCTAAAGACCAAG-ACCTTTAGCGGCA
1 CTTTTAT-AAAAAACGCCGCTATAGACC-TGTACCTTTAGCGGCG
* *
63325048 CTTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCAGCG
1 CTTTTATAAAAAACGCCGCTATAGACCTGTACCTTTAGCGGCG
*
63325091 CTTTTTTAAAAAACGCCGCTA
1 CTTTTATAAAAAACGCCGCTA
63325112 ATTTGCCTAG
Statistics
Matches: 125, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
42 37 0.30
43 53 0.42
44 34 0.27
45 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (43 bp):
CTTTTATAAAAAACGCCGCTATAGACCTGTACCTTTAGCGGCG
Found at i:63325081 original size:87 final size:86
Alignment explanation
Indices: 63324943--63325103 Score: 277
Period size: 87 Copynumber: 1.9 Consensus size: 86
63324933 GCCGCTAGAA
* * *
63324943 ACCAGGACCTTTAGCGGCGCTTTTATAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTT
1 ACCAAGACCTTTAGCGGCACTTTTATAAAAACGCCGCTATAGACCTGTACTTTTAGCAGCGCTTT
63325008 TATAAAAAAACACTGCTAAAG
66 TATAAAAAAACACTGCTAAAG
63325029 ACCAAGACCTTTAGCGGCACTTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCAGCGCTT
1 ACCAAGACCTTTAGCGGCACTTTTAT-AAAAACGCCGCTATAGACCTGTACTTTTAGCAGCGCTT
*
63325094 TTTTAAAAAA
65 TTATAAAAAA
63325104 CGCCGCTAAT
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
86 24 0.34
87 46 0.66
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (86 bp):
ACCAAGACCTTTAGCGGCACTTTTATAAAAACGCCGCTATAGACCTGTACTTTTAGCAGCGCTTT
TATAAAAAAACACTGCTAAAG
Found at i:63325985 original size:18 final size:18
Alignment explanation
Indices: 63325953--63325990 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
63325943 TACAATATAG
63325953 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
63325972 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
63325989 TA
1 TA
63325991 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:63326154 original size:41 final size:41
Alignment explanation
Indices: 63326102--63326202 Score: 121
Period size: 41 Copynumber: 2.5 Consensus size: 41
63326092 AAACACCGCA
* * * *
63326102 AAAAACAGAGCAATAGCGGCGTTTTTTATCCAAACGCTACT
1 AAAAACTGAGCAATAGCGGCGTTTTTGACCCAAACGCCACT
* * **
63326143 AAAAACTGAGCAATAGTGGCGTTTTTGGCCCAAACGCCGTT
1 AAAAACTGAGCAATAGCGGCGTTTTTGACCCAAACGCCACT
*
63326184 AAAAACTGAACAATAGCGG
1 AAAAACTGAGCAATAGCGG
63326203 TGCTTTTGGA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (41 bp):
AAAAACTGAGCAATAGCGGCGTTTTTGACCCAAACGCCACT
Found at i:63326242 original size:41 final size:41
Alignment explanation
Indices: 63326197--63326386 Score: 290
Period size: 41 Copynumber: 4.6 Consensus size: 41
63326187 AACTGAACAA
* * *
63326197 TAGCGGTGCTTTTGGAAAAATGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGAGGTTT
* *
63326238 TAGCGGCGCTTCTGGAAAAACGCTGCTATAGGCCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGAGGTTT
*
63326279 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGAGGTTT
* * *
63326320 TAGCGGCACTTTTGGAAAAACGCCGCTATAGGCTGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGAGGTTT
*
63326361 TAGCGGCGCTTTTGGAAAAATGCCGC
1 TAGCGGCGCTTTTGGAAAAACGCCGC
63326387 AAAAAAGTAA
Statistics
Matches: 137, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 137 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGCCGAGGTTT
Found at i:63326719 original size:18 final size:18
Alignment explanation
Indices: 63326692--63326740 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
63326682 TTGTCCCTTG
63326692 TTAT-ATATATATTAA-A
1 TTATAATATATATTAAGA
*
63326708 CTTCTAATATATATTAAGA
1 -TTATAATATATATTAAGA
63326727 TTATAATATATATT
1 TTATAATATATATT
63326741 TAGGGTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 3 0.11
18 24 0.86
19 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (18 bp):
TTATAATATATATTAAGA
Found at i:63327183 original size:15 final size:15
Alignment explanation
Indices: 63327163--63327194 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
63327153 TTTAATGTAG
*
63327163 AAGATAAATGTATAT
1 AAGATAAATATATAT
63327178 AAGATAAATATATAT
1 AAGATAAATATATAT
63327193 AA
1 AA
63327195 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:63327233 original size:24 final size:23
Alignment explanation
Indices: 63327166--63327233 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
63327156 AATGTAGAAG
* *
63327166 ATAAATGTATATAAGATAAATATAT
1 ATAAAT-TATATATGA-AAAAATAT
* *
63327191 ATAAATTATTATTTTAAAAAATAT
1 ATAAATTA-TATATGAAAAAATAT
63327215 ATAAATATATATATGAAAA
1 ATAAAT-TATATATGAAAA
63327234 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
ATAAATTATATATGAAAAAATAT
Found at i:63332162 original size:372 final size:371
Alignment explanation
Indices: 63331419--63332698 Score: 2506
Period size: 372 Copynumber: 3.4 Consensus size: 371
63331409 CTTGTCCATT
* *
63331419 AAAATTACAATAATAGCTGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
*
63331484 AGAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
63331549 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
63331614 TCATTTACTATTGAATGTTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
63331679 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
63331744 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTAC-TTTTATC
63331791 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
63331856 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
63331921 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
63331986 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
63332051 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
63332116 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
325 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
63332163 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
63332228 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
63332293 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
63332358 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
63332423 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
63332488 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
326 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
63332534 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
63332599 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
63332664 GTAACAACGCCACGTATGATGAATCTTAAAAAATT
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATT
63332699 TGTATGTTTC
Statistics
Matches: 903, Mismatches: 4, Indels: 3
0.99 0.00 0.00
Matches are distributed among these distances:
371 240 0.27
372 595 0.66
373 68 0.08
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.39
Consensus pattern (371 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTATC
Found at i:63332817 original size:24 final size:24
Alignment explanation
Indices: 63332790--63332857 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
63332780 ATTATTATTG
*
63332790 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
63332814 AAATATTATTC-TCCGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
63332838 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
63332858 CCATTTAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 2 0.05
24 37 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:63333079 original size:15 final size:15
Alignment explanation
Indices: 63333034--63333089 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
63333024 AACGACATGT
63333034 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
63333050 ATAATT-TTTAA--AA
1 AT-ATTATTTAATTAA
63333063 ATATTATTTAATTAA
1 ATATTATTTAATTAA
63333078 ATATTATTTAAT
1 ATATTATTTAAT
63333090 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 9 0.25
15 14 0.39
16 7 0.19
17 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:63333206 original size:9 final size:9
Alignment explanation
Indices: 63333194--63333410 Score: 133
Period size: 9 Copynumber: 24.6 Consensus size: 9
63333184 TATTTGATAT
*
63333194 CATAATTTA
1 CATAACTTA
63333203 CATAACTTA
1 CATAACTTA
* *
63333212 TATAACATA
1 CATAACTTA
*
63333221 TATAACTTA
1 CATAACTTA
63333230 CATAACTTA
1 CATAACTTA
* *
63333239 TATAACATA
1 CATAACTTA
63333248 CATAACTTA
1 CATAACTTA
*
63333257 TATAACTTA
1 CATAACTTA
* *
63333266 GATAA-ATA
1 CATAACTTA
*
63333274 TATAACTTA
1 CATAACTTA
63333283 CATAACTTA
1 CATAACTTA
63333292 CATAA--TA
1 CATAACTTA
*
63333299 CATAA-ATA
1 CATAACTTA
* **
63333307 TAT-TTTATA
1 CATAACT-TA
*
63333316 TCATAATTTA
1 -CATAACTTA
63333326 CATAACTTA
1 CATAACTTA
63333335 CATAACTTA
1 CATAACTTA
*
63333344 TATAACTTA
1 CATAACTTA
* *
63333353 GATAA-ATA
1 CATAACTTA
* *
63333361 TATAATTTA
1 CATAACTTA
*
63333370 CATAA-ATA
1 CATAACTTA
* * *
63333378 TATATCATA
1 CATAACTTA
*
63333387 TCATAAATTA
1 -CATAACTTA
63333397 CATAACTTA
1 CATAACTTA
63333406 CATAA
1 CATAA
63333411 TACTTAAATA
Statistics
Matches: 164, Mismatches: 35, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
7 7 0.04
8 21 0.13
9 125 0.76
10 9 0.05
11 2 0.01
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:63333216 original size:18 final size:18
Alignment explanation
Indices: 63333194--63333410 Score: 169
Period size: 18 Copynumber: 12.3 Consensus size: 18
63333184 TATTTGATAT
* *
63333194 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
63333212 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
63333230 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
63333248 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
63333266 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
63333283 CATAACTTACATAA--TA
1 CATAACTTATATAACTTA
* **
63333299 CATAA-ATATAT-TTTATA
1 CATAACTTATATAACT-TA
* *
63333316 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
63333335 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
63333353 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
63333370 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
63333387 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
63333406 CATAA
1 CATAA
63333411 TACTTAAATA
Statistics
Matches: 157, Mismatches: 33, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
15 4 0.03
16 7 0.04
17 40 0.25
18 91 0.58
19 14 0.09
20 1 0.01
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:63333398 original size:114 final size:114
Alignment explanation
Indices: 63333203--63333434 Score: 288
Period size: 114 Copynumber: 2.0 Consensus size: 114
63333193 TCATAATTTA
* * * * *
63333203 CATAACTTATATAACATATATAACTTACATAACTTATATAACATACATAACTTATATAACTTAGA
1 CATAACTTACATAACATACATAACTTACATAACTTAGATAACATACATAACTTACATAAATTAGA
* * *
63333268 TAAATATATAACTTACATAACTTACATAATACATAAATATATTTTATAT
66 TAAATATATAAATTACATAACTTACATAATACATAAATATATATCATAT
* * * * * *
63333317 CATAATTTACATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATA
1 CATAACTTACATAACATACATAACTTACATAACTTAGATAACATACATAACTTACATAAATTAGA
* *
63333380 TATCATATCATAAATTACATAACTTACATAATACTTAAATATATATCATAT
66 TA-AATAT-ATAAATTACATAACTTACATAATACATAAATATATATCATAT
63333431 CATA
1 CATA
63333435 CATAACTAGT
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
112 5 0.05
113 18 0.18
114 77 0.77
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (114 bp):
CATAACTTACATAACATACATAACTTACATAACTTAGATAACATACATAACTTACATAAATTAGA
TAAATATATAAATTACATAACTTACATAATACATAAATATATATCATAT
Found at i:63338263 original size:13 final size:14
Alignment explanation
Indices: 63338247--63338275 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63338237 TTCTAAATAT
63338247 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
63338260 TTATAATTGTTTAA
1 TTATAATTGTTTAA
63338274 TT
1 TT
63338276 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:63338718 original size:21 final size:21
Alignment explanation
Indices: 63338693--63338748 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
63338683 CGGAGGTAGT
*
63338693 AGAGAGGGAGGCAGCGGCAGC
1 AGAGAGGGAGGCAGCGGAAGC
*
63338714 AGAGAGGGAGGCAGTGGAAGC
1 AGAGAGGGAGGCAGCGGAAGC
*
63338735 AGCGAGGGAGGCAG
1 AGAGAGGGAGGCAG
63338749 AGCATAGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.14, G:0.54, T:0.02
Consensus pattern (21 bp):
AGAGAGGGAGGCAGCGGAAGC
Found at i:63339150 original size:43 final size:43
Alignment explanation
Indices: 63339122--63339672 Score: 781
Period size: 43 Copynumber: 12.9 Consensus size: 43
63339112 TTTGTGGGAA
63339122 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
*
63339165 AAACGCCGTTAAAGGCCATGACTTTTAGCGGCGC-TTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
*
63339207 AAACGCTGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* * *
63339250 AAACGCTGCTAAAGGCCGTGACTTTTAGCGGCGCCTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* **
63339293 AAACGCCGCTAAAGG-CAGTGACTTTTAGCGACGC-TTTGCTCC
1 AAACGCCGCTAAAGGCCA-TGACTTTTAGCGGCGCTTTTTTTCC
** *
63339335 AAACGCCGCTAAAGGCTGTGACTTTTAGCGGTGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* * *
63339378 AAACGCTGCTAAAGGCCGTGACTTTTAGCGGTGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* * * * **
63339421 AAACGCCACTAAAGGCCGTGTCTTTTAGCGACGC-TTTGCTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
*
63339463 AAACGCCGCTAAAGGCCGTGACTTTTAGCGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* * *
63339506 AAACGCCGCTAAAGGACATGACTTTTAGCGTCGTTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* **
63339549 AAACGCCGTTAAAGGCCATGACTTTTAGCGGCGC-TTTGCTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
*
63339591 AAACGCTGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-C
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* *
63339633 AAACGCCACTAAAGGACATGACTTTTAGCGGCGCTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTT
63339673 GTAATAAACG
Statistics
Matches: 455, Mismatches: 47, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
42 189 0.42
43 266 0.58
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
Found at i:63339247 original size:85 final size:85
Alignment explanation
Indices: 63339122--63339672 Score: 775
Period size: 85 Copynumber: 6.5 Consensus size: 85
63339112 TTTGTGGGAA
*
63339122 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGTTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
63339187 TTTTAGCGGCGCTTTTTTCC
66 TTTTAGCGGCGCTTTTTTCC
* * *
63339207 AAACGCTGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCTGCTAAAGGCCGTGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
63339272 TTTTAGCGGCGCCTTTTTTCC
66 TTTTAGCGGCG-CTTTTTTCC
* ** **
63339293 AAACGCCGCTAAAGG-CAGTGACTTTTAGCGACGC-TTTGCTCCAAACGCCGCTAAAGGCTGTGA
1 AAACGCCGCTAAAGGCCA-TGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGA
*
63339356 CTTTTAGCGGTGCTTTTTTTCC
65 CTTTTAGCGGCGC-TTTTTTCC
* * * * * *
63339378 AAACGCTGCTAAAGGCCGTGACTTTTAGCGGTGCTTTTTTTCCAAACGCCACTAAAGGCCGTGTC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
* **
63339443 TTTTAGCGACGCTTTGCTCC
66 TTTTAGCGGCGCTTTTTTCC
* *
63339463 AAACGCCGCTAAAGGCCGTGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGACATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
* *
63339528 TTTTAGCGTCGTTTTTTTTCC
66 TTTTAGCGGCG-CTTTTTTCC
* ** *
63339549 AAACGCCGTTAAAGGCCATGACTTTTAGCGGCGC-TTTGCTCCAAACGCTGCTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
*
63339613 TTTTAGCGGCGCTTTTTTTC
66 TTTTAGCGGCGCTTTTTTCC
* *
63339633 AAACGCCACTAAAGGACATGACTTTTAGCGGCGCTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTT
63339673 GTAATAAACG
Statistics
Matches: 411, Mismatches: 48, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
84 39 0.09
85 260 0.63
86 112 0.27
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (85 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
TTTTAGCGGCGCTTTTTTCC
Found at i:63339336 original size:128 final size:128
Alignment explanation
Indices: 63339122--63339672 Score: 845
Period size: 128 Copynumber: 4.3 Consensus size: 128
63339112 TTTGTGGGAA
*
63339122 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGTTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
* ** *
63339187 TTTTAGCGGCGCTTTTTTCCAAACGCTGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
66 TTTTAGCGACGCTTTGCTCCAAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* * *
63339250 AAACGCTGCTAAAGGCCGTGACTTTTAGCGGCGCCTTTTTTCCAAACGCCGCTAAAGG-CAGTGA
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCA-TGA
** *
63339314 CTTTTAGCGACGCTTTGCTCCAAACGCCGCTAAAGGCTGTGACTTTTAGCGGTGCTTTTTTTCC
65 CTTTTAGCGACGCTTTGCTCCAAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* * * * * *
63339378 AAACGCTGCTAAAGGCCGTGACTTTTAGCGGTGCTTTTTTTCCAAACGCCACTAAAGGCCGTGTC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
*
63339443 TTTTAGCGACGCTTTGCTCCAAACGCCGCTAAAGGCCGTGACTTTTAGCGGCGCTTTTTTTCC
66 TTTTAGCGACGCTTTGCTCCAAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* * * *
63339506 AAACGCCGCTAAAGGACATGACTTTTAGCGTCGTTTTTTTTCCAAACGCCGTTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
* *
63339571 TTTTAGCGGCGCTTTGCTCCAAACGCTGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-C
66 TTTTAGCGACGCTTTGCTCCAAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
* *
63339633 AAACGCCACTAAAGGACATGACTTTTAGCGGCGCTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTT
63339673 GTAATAAACG
Statistics
Matches: 387, Mismatches: 34, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
127 40 0.10
128 346 0.89
129 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (128 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
TTTTAGCGACGCTTTGCTCCAAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
Found at i:63345093 original size:6 final size:6
Alignment explanation
Indices: 63345067--63345217 Score: 134
Period size: 6 Copynumber: 24.8 Consensus size: 6
63345057 AACCAAAATG
* *
63345067 AGAATA AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* *
63345115 AGAATC AGAATC AGAATC AGAATT ATGTGA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
63345164 AGTAA-C AGAATC AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
63345213 AGAAT
1 AGAAT
63345218 GTGTATGCAA
Statistics
Matches: 120, Mismatches: 11, Indels: 28
0.75 0.07 0.18
Matches are distributed among these distances:
5 9 0.08
6 99 0.82
7 9 0.08
8 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:63345157 original size:55 final size:55
Alignment explanation
Indices: 63345090--63345217 Score: 222
Period size: 55 Copynumber: 2.3 Consensus size: 55
63345080 GTAACAGAAT
* *
63345090 CAGAATCAGAATCA-ATATTAGTAACAGAATCAGAATCAGAATCAGAATTATGTGA
1 CAGAATCAGAATCAGA-ATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
63345145 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
1 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
63345200 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
63345218 GTGTATGCAA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
55 69 0.99
56 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (55 bp):
CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
Found at i:63345373 original size:27 final size:27
Alignment explanation
Indices: 63345342--63345400 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
63345332 CTGCCAGAAA
*
63345342 AGATATCGTGACAGAGTCACCAG-ATAC
1 AGATATCGTGACAGAGCCACCAGAAT-C
* **
63345369 AGATATTGTGGTAGAGCCACCAGAATC
1 AGATATCGTGACAGAGCCACCAGAATC
63345396 AGATA
1 AGATA
63345401 ATGTGGCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (27 bp):
AGATATCGTGACAGAGCCACCAGAATC
Found at i:63345405 original size:27 final size:27
Alignment explanation
Indices: 63345354--63345406 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63345344 ATATCGTGAC
* *
63345354 AGAGTCACCAGATACAGATATTGTGGT
1 AGAGCCACCAGATACAGATAATGTGGT
63345381 AGAGCCACCAGA-ATCAGATAATGTGG
1 AGAGCCACCAGATA-CAGATAATGTGG
63345407 CAAACCCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGT
Found at i:63345415 original size:27 final size:27
Alignment explanation
Indices: 63345359--63345416 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
63345349 GTGACAGAGT
* * * *
63345359 CACCAGATACAGATATTGTGGTAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
63345386 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
63345413 CACC
1 CACC
63345417 TAATAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:63345621 original size:22 final size:22
Alignment explanation
Indices: 63345573--63345631 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
63345563 GTAAATACGT
*
63345573 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
63345595 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
63345617 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
63345632 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:63345798 original size:27 final size:26
Alignment explanation
Indices: 63345719--63345801 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
63345709 TCGATCGGTC
* * *
63345719 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
63345745 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
63345772 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
63345799 AAC
1 AAC
63345802 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:63346008 original size:27 final size:27
Alignment explanation
Indices: 63345964--63346133 Score: 223
Period size: 27 Copynumber: 6.3 Consensus size: 27
63345954 TTGCCCACAA
*
63345964 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
63345991 GAGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
*
63346018 GGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * * *
63346045 GGGTATTTTGGTAATTCTATCCTATAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
63346072 GGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
63346099 GGGTATTTCAGAAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
63346126 GGGTATTT
1 GGGTATTT
63346134 TAGTAATTTC
Statistics
Matches: 124, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTACAG
Found at i:63346176 original size:27 final size:27
Alignment explanation
Indices: 63346146--63346743 Score: 686
Period size: 27 Copynumber: 22.1 Consensus size: 27
63346136 GTAATTTCAC
*
63346146 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * **
63346173 AATCGAGGGTAAAATGATAATTTTGCA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
63346200 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * * *
63346227 AATCAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
63346254 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
** *
63346281 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63346308 AA-CTGAGGGTAAAACGATAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* ** *
63346335 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63346362 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
63346389 AATCGAGGCTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
63346416 AACCGAGTGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63346443 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
63346470 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
*
63346497 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
63346524 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
63346551 AATCGAGGGTAAAACGATAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
63346578 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63346605 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
63346632 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
63346659 AATCGAAGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
63346686 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63346713 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
63346740 AATC
1 AATC
63346744 AAGAGTACTT
Statistics
Matches: 480, Mismatches: 81, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.01
27 470 0.98
28 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:63346761 original size:108 final size:108
Alignment explanation
Indices: 63346146--63346741 Score: 761
Period size: 108 Copynumber: 5.5 Consensus size: 108
63346136 GTAATTTCAC
* * * * **
63346146 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGCAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGGTA
* * * *
63346211 AACCAGTAATTCTGTAAATC-AAGGGTAAAATGGTAATTTTACA
66 AAACGGTAATTCTGTAAATCGAA-GGTAAAACGGTAATTTTAAA
** *
63346254 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGGTA
* * ** * **
63346319 AAACGATAATTCTATAAATC-AAGGGTAAAATAGTAATTCTGTA
66 AAACGGTAATTCTGTAAATCGAA-GGTAAAACGGTAATTTTAAA
* * * * * *
63346362 AATTGAGGGTAAAACGGTAATTCTATAAATCGAGGCTAAAACGGTAATTTTACAAACCGAGTGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGGTA
*
63346427 AAACGGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT-AA
66 AAACGGTAATTCTGTAAATC-GAAGGTAAAACGGTAATT-T-TAAA
* * * *
63346471 ACT-GAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGGTA
* * *
63346535 AAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTAAA
66 AAACGGTAATTCTGTAAATCGAAGGTAAAACGGTAATTTTAAA
* * *
63346578 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGGTA
*
63346643 AAACGATAATTCTGTAAATCGAAGGTAAAACGGTAATTTTAAA
66 AAACGGTAATTCTGTAAATCGAAGGTAAAACGGTAATTTTAAA
*
63346686 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAA
63346742 TCAAGAGTAC
Statistics
Matches: 428, Mismatches: 53, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
106 1 0.00
107 6 0.01
108 415 0.97
109 5 0.01
110 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (108 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGGTA
AAACGGTAATTCTGTAAATCGAAGGTAAAACGGTAATTTTAAA
Found at i:63348787 original size:55 final size:55
Alignment explanation
Indices: 63348709--63348828 Score: 197
Period size: 55 Copynumber: 2.2 Consensus size: 55
63348699 TAACAGAATC
* *
63348709 AGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGAA
1 AGAATCAGAATCAATATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGAA
*
63348764 AGAATCAGAATCAGA-ATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGAC
1 AGAATCAGAATCA-ATATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGAA
63348819 AGAATCAGAA
1 AGAATCAGAA
63348829 AAAGAATGTG
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
55 60 0.98
56 1 0.02
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (55 bp):
AGAATCAGAATCAATATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGAA
Found at i:63348828 original size:6 final size:6
Alignment explanation
Indices: 63348679--63348810 Score: 132
Period size: 6 Copynumber: 21.8 Consensus size: 6
63348669 AACCAAAATG
* *
63348679 AGAATA AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
63348727 AGTAA-C AGAATC AGAATC AGAATC AGAATT AGGTGAA-- AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A---GAATC AGAATC AGAATC
63348776 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAAT
63348811 TACGTGACAG
Statistics
Matches: 109, Mismatches: 4, Indels: 26
0.78 0.03 0.19
Matches are distributed among these distances:
4 3 0.03
5 7 0.06
6 89 0.82
7 6 0.06
8 1 0.01
9 3 0.03
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:63348990 original size:27 final size:26
Alignment explanation
Indices: 63348953--63349011 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
63348943 AGCATGGCTG
*
63348953 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
63348979 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
63349006 CCAGAA
1 CCAGAA
63349012 TCAAATAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:63349023 original size:27 final size:27
Alignment explanation
Indices: 63348971--63349026 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
63348961 GATATCGTGA
* * *
63348971 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAAATAATGTGG
63348998 CAGAGCCACCAGA-ATCAAATAATGTGG
1 CAGAGCCACCAGATA-CAAATAATGTGG
63349025 CA
1 CA
63349027 AACCCACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGAGCCACCAGATACAAATAATGTGG
Found at i:63349239 original size:22 final size:22
Alignment explanation
Indices: 63349191--63349249 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
63349181 GTAAATACGT
*
63349191 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
63349213 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
63349235 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
63349250 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:63349416 original size:27 final size:26
Alignment explanation
Indices: 63349337--63349419 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
63349327 TTGATCGGTC
* * *
63349337 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
63349363 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
63349390 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
63349417 AAC
1 AAC
63349420 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:63349647 original size:27 final size:27
Alignment explanation
Indices: 63349617--63349785 Score: 178
Period size: 27 Copynumber: 6.3 Consensus size: 27
63349607 GGGACAAAAT
* *
63349617 GGTAATTTTA-CCTCACAAGGGTATCTC
1 GGTAATTCTACCCT-ACAAGGGTATTTC
*
63349644 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63349671 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63349698 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63349725 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*** *
63349752 AAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63349779 AGTAATT
1 GGTAATT
63349786 TCACAATCAA
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 118 0.98
28 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Done.