Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 203 of 325
Found at i:63349693 original size:54 final size:54
Alignment explanation
Indices: 63349618--63349785 Score: 196
Period size: 54 Copynumber: 3.1 Consensus size: 54
63349608 GGACAAAATG
* * * *
63349618 GTAATTTTA-CCTCACAAGGGTATCTCGGTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCT-ACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * *
63349671 GATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* *** *
63349726 GTAATTCTACCCTATAGGGGTATTTCAAAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
63349780 GTAATT
1 GTAATT
63349786 TCACAATCAA
Statistics
Matches: 97, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 92 0.95
55 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
Found at i:63349751 original size:81 final size:81
Alignment explanation
Indices: 63349616--63349777 Score: 227
Period size: 81 Copynumber: 2.0 Consensus size: 81
63349606 AGGGACAAAA
* * * * *
63349616 TGGTAATTTTACCTCACAAGGGTATCTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTA
1 TGGTAATTCTACCTCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAAAAATTCTA
63349681 CCCTACAGGGGTATTT
66 CCCTACAGGGGTATTT
* * * *
63349697 TGGTAATTCTATCCT-ATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAAAAATTCT
1 TGGTAATTCTA-CCTCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAAAAATTCT
63349761 ACCCTACAGGGGTATTT
65 ACCCTACAGGGGTATTT
63349778 CAGTAATTTC
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 68 0.96
82 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (81 bp):
TGGTAATTCTACCTCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAAAAATTCTA
CCCTACAGGGGTATTT
Found at i:63350513 original size:27 final size:27
Alignment explanation
Indices: 63349790--63350498 Score: 834
Period size: 27 Copynumber: 26.3 Consensus size: 27
63349780 GTAATTTCAC
* *
63349790 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
63349817 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
63349844 AA-CTGATGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * * **
63349871 AATCAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63349898 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63349925 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63349952 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
63349979 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** ***
63350006 AATTAAGGGTAAAATAATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** * **
63350033 AATCGAGGGTAAAATAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63350060 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63350087 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
63350114 AA-CTGAGGGTAAAACGATAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** * **
63350141 AATCGAGGGTAAAATAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63350168 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
63350195 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* ** *
63350222 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
63350249 AATCAAAGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63350276 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
63350303 AATCGAGGATAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63350330 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63350357 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63350384 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
63350411 AATCTAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63350438 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63350465 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63350492 AATCGAG
1 AATCGAG
63350499 AGTACTTTGG
Statistics
Matches: 584, Mismatches: 88, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
26 8 0.01
27 569 0.97
28 7 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:63351712 original size:28 final size:28
Alignment explanation
Indices: 63351680--63351743 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
63351670 TTTACTAGAC
*
63351680 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATGACCATTA
* *
63351708 TACCCCTATGTATGCAGAATGACCTTTA
1 TACCCCTATGTATGCAAAATGACCATTA
63351736 TACCCCTA
1 TACCCCTA
63351744 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCATTA
Found at i:63351951 original size:29 final size:28
Alignment explanation
Indices: 63351850--63351940 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
63351840 AGGAAGCGTC
63351850 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
63351878 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
63351906 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
63351935 CTGGTG
1 CTGGTG
63351941 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:63352428 original size:19 final size:19
Alignment explanation
Indices: 63352404--63352442 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
63352394 TTTTAATTAT
* *
63352404 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
63352423 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
63352442 T
1 T
63352443 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:63353054 original size:11 final size:10
Alignment explanation
Indices: 63353026--63353059 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
63353016 AGCTTGTAAG
63353026 TATTCTGAAT
1 TATTCTGAAT
*
63353036 TTTTCTGAAT
1 TATTCTGAAT
63353046 ATATTCTGAAT
1 -TATTCTGAAT
63353057 TAT
1 TAT
63353060 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:63354856 original size:14 final size:14
Alignment explanation
Indices: 63354816--63354859 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 14
63354806 GACCACGAAA
63354816 GGGGATGAGGTTAT
1 GGGGATGAGGTTAT
63354830 GGTGATAGATGAGGTTAT
1 GG-G---GATGAGGTTAT
63354848 GGGGATGAGGTT
1 GGGGATGAGGTT
63354860 TTACCAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
14 11 0.42
15 1 0.04
17 1 0.04
18 13 0.50
ACGTcount: A:0.23, C:0.00, G:0.48, T:0.30
Consensus pattern (14 bp):
GGGGATGAGGTTAT
Found at i:63354914 original size:41 final size:41
Alignment explanation
Indices: 63354857--63355096 Score: 365
Period size: 41 Copynumber: 5.9 Consensus size: 41
63354847 TGGGGATGAG
*
63354857 GTTTTACCAAAAGCGCCGCTAATGATCTGGTTTTTAGCGGC
1 GTTTTACCCAAAGCGCCGCTAATGATCTGGTTTTTAGCGGC
* *
63354898 GTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGC
1 GTTTTACCCAAAGCGCCGCTAATGATCTGGTTTTTAGCGGC
*
63354939 GTTTTACCCAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGC
1 GTTTTACCCAAAGCGCCGCTAATGATCTGGTTTTTAGCGGC
* *
63354980 GCTTTACCCAAAGCGCCGCTAATGATCTGGTTTTTAGTGGC
1 GTTTTACCCAAAGCGCCGCTAATGATCTGGTTTTTAGCGGC
* * **
63355021 GTTTTACCTAAAGCACCGCTAATGATCTGGTTTTTAATGGC
1 GTTTTACCCAAAGCGCCGCTAATGATCTGGTTTTTAGCGGC
* *
63355062 GTTTTACCTAAAGCGCCGCTAATGAT-TAGTTTTTA
1 GTTTTACCCAAAGCGCCGCTAATGATCTGGTTTTTA
63355097 ACGATGTTTT
Statistics
Matches: 187, Mismatches: 12, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
40 8 0.04
41 179 0.96
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (41 bp):
GTTTTACCCAAAGCGCCGCTAATGATCTGGTTTTTAGCGGC
Found at i:63355137 original size:42 final size:42
Alignment explanation
Indices: 63355090--63355221 Score: 153
Period size: 41 Copynumber: 3.2 Consensus size: 42
63355080 CTAATGATTA
*
63355090 GTTTTTAACGATGTTTTAGTAAAAAAACGCCGCTGTTGCTCT
1 GTTTTTAACGACGTTTTAGTAAAAAAACGCCGCTGTTGCTCT
* * * *
63355132 ATTTTTAGCGGCGTTTTAGT-AAAAAATGCCGCTGTTGCTCT
1 GTTTTTAACGACGTTTTAGTAAAAAAACGCCGCTGTTGCTCT
* * * *
63355173 GTTTTTAGCAACGTTTTA--AGAAAAACGCCGCTATTGCTCT
1 GTTTTTAACGACGTTTTAGTAAAAAAACGCCGCTGTTGCTCT
63355213 GTATTTTAA
1 GT-TTTTAA
63355222 AATTTTTGCC
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
40 20 0.26
41 40 0.53
42 16 0.21
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.39
Consensus pattern (42 bp):
GTTTTTAACGACGTTTTAGTAAAAAAACGCCGCTGTTGCTCT
Found at i:63355137 original size:123 final size:123
Alignment explanation
Indices: 63354865--63355149 Score: 331
Period size: 123 Copynumber: 2.3 Consensus size: 123
63354855 AGGTTTTACC
* * * *
63354865 AAAAGCGCCGCTAATGATCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTT
1 AAAAACGCCGCTAATGATCTGATTTTTAGCGGCGTTTTACCGAAAGCACCGCTAATGATCTGGTT
* * * * * **
63354930 TTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGCTTTACC
66 TTTAACGGCGTTTTACCCAAAGCGCCGCTAATGATCTAGTTTTTAACGACGCTTTAAA
* * * * *
63354988 CAAAGCGCCGCTAATGATCTGGTTTTTAGTGGCGTTTTACCTAAAGCACCGCTAATGATCTGGTT
1 AAAAACGCCGCTAATGATCTGATTTTTAGCGGCGTTTTACCGAAAGCACCGCTAATGATCTGGTT
* * * *
63355053 TTTAATGGCGTTTTACCTAAAGCGCCGCTAATGAT-TAGTTTTTAACGATGTTTTAGTAA
66 TTTAACGGCGTTTTACCCAAAGCGCCGCTAATGATCTAGTTTTTAACGACGCTTTA--AA
** *
63355112 AAAAACGCCGCTGTTGCTCT-ATTTTTAGCGGCGTTTTA
1 AAAAACGCCGCTAATGATCTGATTTTTAGCGGCGTTTTA
63355150 GTAAAAAATG
Statistics
Matches: 137, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
122 15 0.11
123 107 0.78
124 15 0.11
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (123 bp):
AAAAACGCCGCTAATGATCTGATTTTTAGCGGCGTTTTACCGAAAGCACCGCTAATGATCTGGTT
TTTAACGGCGTTTTACCCAAAGCGCCGCTAATGATCTAGTTTTTAACGACGCTTTAAA
Found at i:63358719 original size:48 final size:48
Alignment explanation
Indices: 63358641--63358884 Score: 229
Period size: 48 Copynumber: 5.0 Consensus size: 48
63358631 ACGAATATCA
* * * *
63358641 CGACATGTGAGTATTGAGATCCCGTGTAAGACCATATCTGGGATATGGCAT
1 CGACAT-TGA-TA-TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
* * * *
63358692 CGGCATTGATAAGAGATCCTGTGTAAGAGCC-TGTCTGGGACATGGCAT
1 CGACATTGATATGAGAGCCAGTGTAAGA-CCATGTCTGGGACATGGCAT
** *
63358740 CGATGTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 CGACATTGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
** *
63358788 CGACATTGATATGTTAGCCAGTGTAAGACCATGGCTGGGACATGGCAT
1 CGACATTGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
* * * ** * * * * *
63358836 TGGCTTTGATATTTGTGCTAGTATAAGACCATGTTTAGGACATGGCAT
1 CGACATTGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
63358884 C
1 C
63358885 AGCACTGACA
Statistics
Matches: 163, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
47 2 0.01
48 149 0.91
49 4 0.02
50 3 0.02
51 5 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
CGACATTGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
Found at i:63358787 original size:96 final size:96
Alignment explanation
Indices: 63358664--63358884 Score: 257
Period size: 96 Copynumber: 2.3 Consensus size: 96
63358654 TTGAGATCCC
* * * * * *
63358664 GTGTAAGACCATATCTGGGATATGGCATCGGCATTGATAAGAGATCCTGTGTAAGAGCC-TGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGAGAGCCAGTGTAAGA-CCATGGCT
63358728 GGGACATGGCA-TCGATGTTGATATGTGAGCCA
65 GGGACATGGCATTCGAT-TTGATATGTGAGCCA
* **
63358760 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTTAGCCAGTGTAAGACCATGGCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGAGAGCCAGTGTAAGACCATGGCTG
* * * * *
63358825 GGACATGGCATTGGCTTTGATATTTGTGCTA
66 GGACATGGCATTCGATTTGATATGTGAGCCA
* * *
63358856 GTATAAGACCATGTTTAGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
63358885 AGCACTGACA
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
95 2 0.02
96 101 0.95
97 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGAGAGCCAGTGTAAGACCATGGCTG
GGACATGGCATTCGATTTGATATGTGAGCCA
Found at i:63368670 original size:43 final size:43
Alignment explanation
Indices: 63368575--63368674 Score: 130
Period size: 43 Copynumber: 2.3 Consensus size: 43
63368565 TTCGGGCCTA
* *
63368575 CGAGCTTAGCAGGCTATAATGCCAGCGATTTAATATCGAGCTT
1 CGAGCCTAGCAGGCTATAATGCCAGCGAGTTAATATCGAGCTT
** * *
63368618 TAAGTCTAGCAGGCTATAATGCCAGTGAGTTAATATCTG-GCTT
1 CGAGCCTAGCAGGCTATAATGCCAGCGAGTTAATATC-GAGCTT
63368661 CGAGCCTAGCAGGC
1 CGAGCCTAGCAGGC
63368675 GTAATACCGG
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
CGAGCCTAGCAGGCTATAATGCCAGCGAGTTAATATCGAGCTT
Found at i:63369224 original size:41 final size:40
Alignment explanation
Indices: 63369156--63369405 Score: 232
Period size: 41 Copynumber: 6.1 Consensus size: 40
63369146 GTAGAAATTA
* * *
63369156 TAAAACACGGAGCAATAGCGGCGTTTTTGGTAAAACACCGC
1 TAAAA-ACAGAGCAATAGTGGCGTTTTTGGTAAAACGCCGC
*
63369197 TAAAAACAGAGCAATAGTGGCATTTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGTGGC-GTTTTTGGTAAAACGCCGC
* **** *
63369238 TAAAAACAGAGCAATA-TCGGCATTTTACCAAAAACGCTGC
1 TAAAAACAGAGCAATAGT-GGCGTTTTTGGTAAAACGCCGC
* * * * *
63369278 TAAAAACCAGAGCATTAGCGGTGTTTTTGGTGAAACGCCAC
1 TAAAAA-CAGAGCAATAGTGGCGTTTTTGGTAAAACGCCGC
* * *
63369319 TGAAAACCAGAGCATTAGTGGCGCTTTTGGTAAAACGCCGC
1 T-AAAAACAGAGCAATAGTGGCGTTTTTGGTAAAACGCCGC
* * * * *
63369360 TAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGC
1 TAAAAA-CAGAGCAATAGTGGCGTTTTTGGTAAAACGCCGC
63369401 TAAAA
1 TAAAA
63369406 GTCATATAAT
Statistics
Matches: 172, Mismatches: 31, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
40 38 0.22
41 130 0.76
42 4 0.02
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGTGGCGTTTTTGGTAAAACGCCGC
Found at i:63369802 original size:16 final size:15
Alignment explanation
Indices: 63369773--63369828 Score: 58
Period size: 17 Copynumber: 3.5 Consensus size: 15
63369763 TCATCAAATT
63369773 AACTCTAAAACCCTA
1 AACTCTAAAACCCTA
*
63369788 AACTCTTAAACCCCTA
1 AACTC-TAAAACCCTA
*
63369804 AACCTAATAAAACCCTA
1 AA-CT-CTAAAACCCTA
*
63369821 AACACTAA
1 AACTCTAA
63369829 TCTATAACCC
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
15 8 0.24
16 12 0.36
17 13 0.39
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (15 bp):
AACTCTAAAACCCTA
Found at i:63369819 original size:17 final size:18
Alignment explanation
Indices: 63369778--63369829 Score: 65
Period size: 16 Copynumber: 3.1 Consensus size: 18
63369768 AAATTAACTC
*
63369778 TAAAACCCTAAACTCT--
1 TAAAACCCTAAACACTAA
*
63369794 TAAACCCCTAAAC-CTAA
1 TAAAACCCTAAACACTAA
63369811 TAAAACCCTAAACACTAA
1 TAAAACCCTAAACACTAA
63369829 T
1 T
63369830 CTATAACCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 2 0.06
16 12 0.39
17 12 0.39
18 5 0.16
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAACCCTAAACACTAA
Found at i:63370483 original size:19 final size:20
Alignment explanation
Indices: 63370448--63370491 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
63370438 ATTAGATTGA
63370448 AAAAAAATTGATAAATAAAT
1 AAAAAAATTGATAAATAAAT
*
63370468 AAAAACATTGAT-AATAAAT
1 AAAAAAATTGATAAATAAAT
63370487 AAAAA
1 AAAAA
63370492 TAAAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAAAAATTGATAAATAAAT
Found at i:63370494 original size:6 final size:6
Alignment explanation
Indices: 63370478--63370511 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
63370468 AAAAACATTG
63370478 ATAATAA ATAAAA ATAAAA TATAAAA ATAAAA AT
1 ATAA-AA ATAAAA ATAAAA -ATAAAA ATAAAA AT
63370512 GTATAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (6 bp):
ATAAAA
Found at i:63370501 original size:13 final size:13
Alignment explanation
Indices: 63370485--63370509 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63370475 TTGATAATAA
63370485 ATAAAAATAAAAT
1 ATAAAAATAAAAT
63370498 ATAAAAATAAAA
1 ATAAAAATAAAA
63370510 ATGTATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
ATAAAAATAAAAT
Found at i:63370760 original size:6 final size:6
Alignment explanation
Indices: 63370744--63370774 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
63370734 ACCCATACGA
*
63370744 TCCCTT CCCCTT TCCCTT TCCCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
63370775 GGTTTTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
TCCCTT
Found at i:63372999 original size:22 final size:23
Alignment explanation
Indices: 63372948--63373000 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
63372938 AGAAAACCAT
63372948 TTTAT-GTGTTAAATGCTGAAAA
1 TTTATGGTGTTAAATGCTGAAAA
*
63372970 TTTA-GGTGTTAAATGCTG-CAA
1 TTTATGGTGTTAAATGCTGAAAA
63372991 TTTATGGTGT
1 TTTATGGTGT
63373001 CTGAAAGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (23 bp):
TTTATGGTGTTAAATGCTGAAAA
Found at i:63374814 original size:43 final size:41
Alignment explanation
Indices: 63374753--63374899 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 41
63374743 TTTTTGAAGT
* *
63374753 TCATGATTTTTAGCGGCGTTTGAGAGAAAAGGGCCGCTAAAAG
1 TCATGATTTTTAGCGGCGTTTG-G-GAAAAGCGCCGCTAAAGG
* * *
63374796 TCATG-TTCTTTAGTGGCGTCTATGGGAAAAGTGCTGCTAAAGG
1 TCATGATT-TTTAGCGGCGT-T-TGGGAAAAGCGCCGCTAAAGG
* *
63374839 TCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGG
1 TCATGATTTTTAGCGGCG-TT-TGGGAAAAGCGCCGCTAAAGG
63374882 TCATGATTTTTAGCGGCG
1 TCATGATTTTTAGCGGCG
63374900 CTTTTCCCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
42 2 0.02
43 80 0.91
44 4 0.05
45 2 0.02
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.30
Consensus pattern (41 bp):
TCATGATTTTTAGCGGCGTTTGGGAAAAGCGCCGCTAAAGG
Found at i:63374917 original size:43 final size:43
Alignment explanation
Indices: 63374753--63374936 Score: 147
Period size: 43 Copynumber: 4.3 Consensus size: 43
63374743 TTTTTGAAGT
* *** * *
63374753 TCATGATTTTTAGCGGCGTTTGAGAGAAAAGGGCCGCTAAAAG
1 TCATGATCTTTAGCGGCGTTTGTCCGAAAAGCGCCGCTAAAGG
* * * * ** * *
63374796 TCATGTTCTTTAGTGGCGTCTATGGGAAAAGTGCTGCTAAAGG
1 TCATGATCTTTAGCGGCGTTTGTCCGAAAAGCGCCGCTAAAGG
** *
63374839 TCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGG
1 TCATGATCTTTAGCGGCGTTTGTCCGAAAAGCGCCGCTAAAGG
* **
63374882 TCATGATTTTTAGCGGCGCTTT-TCCCGAAAA-CGCCGCTAAAAA
1 TCATGATCTTTAGCGGCG-TTTGT-CCGAAAAGCGCCGCTAAAGG
*
63374925 TCATGACCTTTA
1 TCATGATCTTTA
63374937 ACAGCATTTT
Statistics
Matches: 114, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
43 106 0.93
44 8 0.07
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
TCATGATCTTTAGCGGCGTTTGTCCGAAAAGCGCCGCTAAAGG
Found at i:63374921 original size:86 final size:86
Alignment explanation
Indices: 63374753--63374936 Score: 185
Period size: 86 Copynumber: 2.1 Consensus size: 86
63374743 TTTTTGAAGT
* * *
63374753 TCATGATTTTTAGCGGCGTTTGAGAGAAAAGGGCCGCTAAAAGTCATGTTCTTTAGTGGCGTCTA
1 TCATGATCTTTAGCGGCGTTTGAGAGAAAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTCTA
** * * **
63374818 TGGGAAAAGTGCTGCTAAAGG
66 TCCGAAAAGCGCCGCTAAAAA
* * * *
63374839 TCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGATT-TTTAGCGGCG-CT
1 TCATGATCTTTAGCGGCGTTTGAGAGAAAAGCGCCGCTAAAAGTCATG-TTCTTTAGCGGCGTC-
*
63374902 TTTCCCGAAAA-CGCCGCTAAAAA
64 TAT-CCGAAAAGCGCCGCTAAAAA
*
63374925 TCATGACCTTTA
1 TCATGATCTTTA
63374937 ACAGCATTTT
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
85 1 0.01
86 72 0.90
87 7 0.09
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (86 bp):
TCATGATCTTTAGCGGCGTTTGAGAGAAAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTCTA
TCCGAAAAGCGCCGCTAAAAA
Found at i:63380077 original size:45 final size:44
Alignment explanation
Indices: 63380011--63380098 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 44
63380001 ATATCGTACA
* *
63380011 ATACTATTCTGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAG
1 ATACTATTCAGGCCTTTGAGCCTAGCAGGCTA-AATGCCGGTGAG
63380056 ATACTATTCAGG-CTTTCGAGCCTAGCAGGCTAAATGCCGGTGA
1 ATACTATTCAGGCCTTT-GAGCCTAGCAGGCTAAATGCCGGTGA
63380099 TTTGATAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
44 15 0.38
45 25 0.62
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (44 bp):
ATACTATTCAGGCCTTTGAGCCTAGCAGGCTAAATGCCGGTGAG
Found at i:63383290 original size:64 final size:64
Alignment explanation
Indices: 63383209--63383392 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
63383199 AGACATTATG
* * * *
63383209 ATGTAGCTAGGGCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
63383273 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGATAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63383338 AA
63 AA
* * *
63383340 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
63383393 CAAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 24 0.25
66 21 0.22
67 32 0.33
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63391193 original size:45 final size:45
Alignment explanation
Indices: 63391129--63391302 Score: 203
Period size: 45 Copynumber: 3.9 Consensus size: 45
63391119 TATCGTACGG
* *
63391129 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
63391174 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGTCGGTCAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
63391219 TACTATTCGGGCCTTTGAGCCTAGTAAGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
63391264 TGA-TA-TC-GGACTTCGTGCCTAGCAGGCGA-AATGCCGGTG
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTG
63391303 GATGAATTCG
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 10 0.09
43 16 0.14
44 2 0.02
45 82 0.74
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:63393210 original size:47 final size:47
Alignment explanation
Indices: 63393138--63393261 Score: 230
Period size: 47 Copynumber: 2.6 Consensus size: 47
63393128 CGCCCATAAG
*
63393138 CGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATTTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATTTCA
63393185 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATTTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATTTCA
*
63393232 CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGCTCGGA
63393262 CATTCGCATC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (47 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:63404845 original size:5 final size:6
Alignment explanation
Indices: 63404812--63404852 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
63404802 ATAATTTAAT
*
63404812 AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
63404853 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:63404940 original size:9 final size:9
Alignment explanation
Indices: 63404872--63404939 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
63404862 TTTATACAAA
63404872 TAATTCGGT
1 TAATTCGGT
*
63404881 TAATTCGGG
1 TAATTCGGT
*
63404890 TAATTCGGG
1 TAATTCGGT
63404899 TAATTCGGT
1 TAATTCGGT
*
63404908 TAATTCGAT
1 TAATTCGGT
*
63404917 TAATTCAGT
1 TAATTCGGT
*
63404926 TAATTTGGT
1 TAATTCGGT
63404935 TAATT
1 TAATT
63404940 TTATACTTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:63413824 original size:40 final size:39
Alignment explanation
Indices: 63413759--63413838 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 39
63413749 TGCGGTACCT
* *
63413759 TATGGTTGTAGGGTTGGATGGGTCGATTATATCCCCACA
1 TATGGTTGCAGGGATGGATGGGTCGATTATATCCCCACA
* *
63413798 TATGGTGTGCAGGGATGGGTGGGTCGATTTTATCCCCACA
1 TATGGT-TGCAGGGATGGATGGGTCGATTATATCCCCACA
63413838 T
1 T
63413839 GGTGTGATGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 6 0.17
40 30 0.83
ACGTcount: A:0.19, C:0.16, G:0.33, T:0.33
Consensus pattern (39 bp):
TATGGTTGCAGGGATGGATGGGTCGATTATATCCCCACA
Found at i:63416322 original size:47 final size:48
Alignment explanation
Indices: 63416262--63416375 Score: 160
Period size: 47 Copynumber: 2.4 Consensus size: 48
63416252 CTCAATCGAT
*
63416262 AAGTATCTATACCATGGCCCGTAGCCAAATCAAGTTAACTTATC-CT-
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGTTAACTTATCTCTG
* *
63416308 AGAGTACCTATACCATGGCTCGTAGCCAAATCAAGTTAACTTCTCTCTG
1 A-AGTACCTATACCATGGCCCGTAGCCAAATCAAGTTAACTTATCTCTG
* *
63416357 AAATACCCATACCATGGCC
1 AAGTACCTATACCATGGCC
63416376 TATAGCCATC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 40 0.68
48 17 0.29
49 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGTTAACTTATCTCTG
Found at i:63417943 original size:16 final size:16
Alignment explanation
Indices: 63417913--63417955 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
63417903 GAATAGATAT
63417913 GTGAATAAA-AAATAA
1 GTGAATAAATAAATAA
*
63417928 GTTAATAAATAAATAA
1 GTGAATAAATAAATAA
*
63417944 GTGAACAAATAA
1 GTGAATAAATAA
63417956 GTGAAGAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.63, C:0.02, G:0.12, T:0.23
Consensus pattern (16 bp):
GTGAATAAATAAATAA
Found at i:63426965 original size:47 final size:48
Alignment explanation
Indices: 63426803--63427021 Score: 217
Period size: 48 Copynumber: 4.6 Consensus size: 48
63426793 TTGAGATCCC
* * *** * *
63426803 GTGTAAGACCATATCTGGGATATGGCATCGGCATTGATAAGAGATCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATTTGAGCCA
* * ** *
63426851 GCGTAAGACCCTGTCTGGGACATGGCATCGGTGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATTTGAGCCA
* * * *
63426899 GTGTAAGACCATGTTTGGGACATGGCATCGACATTGA-ATTTTAGCCC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATTTGAGCCA
* * * * * *
63426946 GTGTAAGACCATGCCTGGGACATGGCAT-TGCTTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATTTGAGCCA
*
63426993 GTATAAGACCATGTCTGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
63427022 AGCACTGACG
Statistics
Matches: 138, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
46 5 0.04
47 64 0.46
48 69 0.50
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATTTGAGCCA
Found at i:63437068 original size:17 final size:18
Alignment explanation
Indices: 63437046--63437079 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
63437036 GCCATTTTCA
63437046 GACGTGTGGG-CCACACG
1 GACGTGTGGGTCCACACG
63437063 GACGTGTGGGTCCACAC
1 GACGTGTGGGTCCACAC
63437080 AGGCCGACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.18, C:0.29, G:0.38, T:0.15
Consensus pattern (18 bp):
GACGTGTGGGTCCACACG
Found at i:63440062 original size:41 final size:41
Alignment explanation
Indices: 63439994--63440179 Score: 237
Period size: 41 Copynumber: 4.5 Consensus size: 41
63439984 AGAATATTAT
* * *
63439994 TGAATTGCACATACGTTCCCCTTTTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * *
63440035 TAAATTGCACATACGTGCCTCTATTTGTACTTCAGTACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * *
63440076 TGAATTGCACATATGTGCCCCTATTTGTACTTTGGTACCCA
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * * * * *
63440117 TTAATTGCACATGCATGCCCCTGTTTATACTTCGATACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
63440158 TGAATTGCACATACGTGCCCCT
1 TGAATTGCACATACGTGCCCCT
63440180 GTTTAAACTT
Statistics
Matches: 121, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 121 1.00
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:63440148 original size:82 final size:82
Alignment explanation
Indices: 63439994--63440179 Score: 266
Period size: 82 Copynumber: 2.3 Consensus size: 82
63439984 AGAATATTAT
* * * * *
63439994 TGAATTGCACATACGTTCCCCTTTTTGTACTTTGGTACCCCTAAATTGCACATACGTGCCTCTAT
1 TGAATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCATAAATTGCACATACATGCCCCTAT
*
63440059 TTGTACTTC-AGTACCCC
66 TTATACTTCGA-TACCCC
* * * *
63440076 TGAATTGCACATATGTGCCCCTATTTGTACTTTGGTACCCATTAATTGCACATGCATGCCCCTGT
1 TGAATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCATAAATTGCACATACATGCCCCTAT
63440141 TTATACTTCGATACCCC
66 TTATACTTCGATACCCC
63440158 TGAATTGCACATACGTGCCCCT
1 TGAATTGCACATACGTGCCCCT
63440180 GTTTAAACTT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
82 91 0.99
83 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.35
Consensus pattern (82 bp):
TGAATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCATAAATTGCACATACATGCCCCTAT
TTATACTTCGATACCCC
Found at i:63440661 original size:13 final size:13
Alignment explanation
Indices: 63440645--63440685 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
63440635 ATTTTTAAAT
63440645 TTTAGTGATAATA
1 TTTAGTGATAATA
63440658 TTTA-TGAT--TA
1 TTTAGTGATAATA
63440668 TTTAGTGATAATA
1 TTTAGTGATAATA
63440681 TTTAG
1 TTTAG
63440686 GAAAAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.24
11 4 0.16
12 4 0.16
13 11 0.44
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (13 bp):
TTTAGTGATAATA
Found at i:63441960 original size:41 final size:41
Alignment explanation
Indices: 63441915--63442059 Score: 182
Period size: 41 Copynumber: 3.5 Consensus size: 41
63441905 GCTTTATGCT
* * *
63441915 GGTGTATTTTCTCACGCTTTGTGCCTAGCAGGCTTCGTGCC
1 GGTGTATATTATCAGGCTTTGTGCCTAGCAGGCTTCGTGCC
* * *
63441956 GGTGTATATTATCAAGCTTTGTGTCTAGCAAGCTTCGTGCC
1 GGTGTATATTATCAGGCTTTGTGCCTAGCAGGCTTCGTGCC
** * * * *
63441997 AATGTATATTATCAGGCTTTGTACCGAGCAGGCTTCCTACC
1 GGTGTATATTATCAGGCTTTGTGCCTAGCAGGCTTCGTGCC
63442038 GGTGTATATTATCAGGCTTTGT
1 GGTGTATATTATCAGGCTTTGT
63442060 TGTCGATGTA
Statistics
Matches: 88, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (41 bp):
GGTGTATATTATCAGGCTTTGTGCCTAGCAGGCTTCGTGCC
Found at i:63442109 original size:67 final size:67
Alignment explanation
Indices: 63441998--63442126 Score: 168
Period size: 67 Copynumber: 1.9 Consensus size: 67
63441988 CTTCGTGCCA
* * *
63441998 ATGTATATTATCAGGCTTTGTACCGAGCAGGCTTCCTACCGGTGTATATTATCAGGCTTTGTTGT
1 ATGTATATTATCAGGCTTTCTACCGAGCAGGATTCCTACCGGTGTATATTATCAGACTTTGTTGT
63442063 CG
66 CG
* * * * * * *
63442065 ATGTATATTATTAGGCTTTCTGCCTAGCAGGATTCGTGCTGGTGTGTATTATCAGACTTTGT
1 ATGTATATTATCAGGCTTTCTACCGAGCAGGATTCCTACCGGTGTATATTATCAGACTTTGT
63442127 GCCTAACAGG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
67 52 1.00
ACGTcount: A:0.19, C:0.17, G:0.24, T:0.40
Consensus pattern (67 bp):
ATGTATATTATCAGGCTTTCTACCGAGCAGGATTCCTACCGGTGTATATTATCAGACTTTGTTGT
CG
Found at i:63442150 original size:108 final size:108
Alignment explanation
Indices: 63441958--63442161 Score: 239
Period size: 108 Copynumber: 1.9 Consensus size: 108
63441948 TTCGTGCCGG
* * * *
63441958 TGTATATTATCAAGCTTTGTGTCTAGCAAGCTTCGTGCCAATGTATATTATCAGGCTTTGTACCG
1 TGTATATTATCAAGCTTTCTGCCTAGCAAGATTCGTGCCAATGTATATTATCAGACTTTGTACCG
*
63442023 AGCAGGCTTCCTACCGGTGTA-TATTATCAGGCTTTGTTGTCGA
66 AACAGGCTTCCTACCGGTGTATTA-TATCAGGCTTTGTTGTCGA
* * * *** * * *
63442066 TGTATATTATTAGGCTTTCTGCCTAGCAGGATTCGTGCTGGTGTGTATTATCAGACTTTGTGCCT
1 TGTATATTATCAAGCTTTCTGCCTAGCAAGATTCGTGCCAATGTATATTATCAGACTTTGTACCG
* * *
63442131 AACAGGCTTCTTGCTGGTGTATTATATCAGG
66 AACAGGCTTCCTACCGGTGTATTATATCAGG
63442162 TAACTTGTAA
Statistics
Matches: 78, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
108 76 0.97
109 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (108 bp):
TGTATATTATCAAGCTTTCTGCCTAGCAAGATTCGTGCCAATGTATATTATCAGACTTTGTACCG
AACAGGCTTCCTACCGGTGTATTATATCAGGCTTTGTTGTCGA
Found at i:63442160 original size:41 final size:41
Alignment explanation
Indices: 63442070--63442150 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
63442060 TGTCGATGTA
* * *
63442070 TATTATTAGGCTTTCTGCCTAGCAGGATTCGTGCTGGTGTG
1 TATTATCAGACTTTCTGCCTAACAGGATTCGTGCTGGTGTG
* * *
63442111 TATTATCAGACTTTGTGCCTAACAGGCTTCTTGCTGGTGT
1 TATTATCAGACTTTCTGCCTAACAGGATTCGTGCTGGTGT
63442151 ATTATATCAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.16, C:0.19, G:0.26, T:0.40
Consensus pattern (41 bp):
TATTATCAGACTTTCTGCCTAACAGGATTCGTGCTGGTGTG
Found at i:63443856 original size:64 final size:64
Alignment explanation
Indices: 63443701--63443958 Score: 195
Period size: 68 Copynumber: 3.9 Consensus size: 64
63443691 TGGATGATAC
* ** * * *
63443701 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTA
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTA
63443764 CAAG
63 C--G
* *
63443768 ACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
63443833 G
64 G
* * * * * * *
63443834 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAACAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
63443899 CG
63 CG
* * *
63443901 AGATAAACTG--GCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 AGATATA-TGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
63443959 TCGAACTATA
Statistics
Matches: 154, Mismatches: 28, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
62 1 0.01
63 17 0.11
64 26 0.17
65 2 0.01
66 22 0.14
67 34 0.22
68 51 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:63453803 original size:11 final size:11
Alignment explanation
Indices: 63453767--63453822 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
63453757 CATGGTATGT
63453767 ATGATATGCAC
1 ATGATATGCAC
* *
63453778 ATGACATG--T
1 ATGATATGCAC
63453787 ATGATATGCAC
1 ATGATATGCAC
*
63453798 ATGATATG--T
1 ATGATATGCAC
63453807 ATGATATGCAC
1 ATGATATGCAC
63453818 ATGAT
1 ATGAT
63453823 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:63453822 original size:20 final size:20
Alignment explanation
Indices: 63453756--63453822 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
63453746 ATTTTGATAA
*
63453756 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63453776 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63453796 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63453816 ACATGAT
1 ACATGAT
63453823 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63453955 original size:24 final size:24
Alignment explanation
Indices: 63453871--63454016 Score: 215
Period size: 25 Copynumber: 6.0 Consensus size: 24
63453861 GGAGGAAGTG
63453871 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
63453895 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
63453920 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
63453945 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
63453969 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
63453992 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
63454017 ATGATAAAGC
Statistics
Matches: 115, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
23 19 0.17
24 40 0.35
25 56 0.49
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:63454245 original size:31 final size:31
Alignment explanation
Indices: 63454210--63454273 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
63454200 CGTTTACAGT
63454210 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
63454241 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63454272 AA
1 AA
63454274 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63457242 original size:70 final size:70
Alignment explanation
Indices: 63457109--63457243 Score: 218
Period size: 70 Copynumber: 1.9 Consensus size: 70
63457099 TAGTTTATTA
* * * *
63457109 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGAAAAATTTATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGAAAAATTCATGGTG
63457174 CTTAG
66 CTTAG
63457179 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGACAAAA-TCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGA-AAAATTCATGGT
63457243 G
65 G
63457244 TTATGTGCTA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
70 56 0.93
71 4 0.07
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGAAAAATTCATGGTG
CTTAG
Found at i:63458073 original size:43 final size:43
Alignment explanation
Indices: 63458015--63458186 Score: 215
Period size: 43 Copynumber: 4.0 Consensus size: 43
63458005 TATCGAAATG
63458015 TGATATACGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATAT-CGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
63458059 TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
63458102 TAATATCAGGCCTC-AGGCCTAGCAGGCTATAATGCTGGTGAAA
1 TGATATCGGGCTTCGA-GCCTAGCAGGCTATAATGCCGGTGAAA
* * *
63458145 TGATATAGGGCTTCAAGCCTAGCAGG-TGA-AATGCCGATGAAA
1 TGATATCGGGCTTCGAGCCTAGCAGGCT-ATAATGCCGGTGAAA
63458187 GAAAGGCTTC
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
42 13 0.12
43 93 0.82
44 7 0.06
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (43 bp):
TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:63459932 original size:51 final size:51
Alignment explanation
Indices: 63459860--63459970 Score: 143
Period size: 51 Copynumber: 2.2 Consensus size: 51
63459850 ATTTATCATT
** *
63459860 TCCATTTCCATTTTGGAGAAAACCACATTCATTTCCAAATGATTT-TATTTC
1 TCCATTTCCATTTTCAAGAAAACCACAATCATTTCCAAATG-TTTCTATTTC
* **
63459911 TCCATTTTCATTTTCAAGAAAACCTTAATCATTTCCAAATGTTTCCTATTTC
1 TCCATTTCCATTTTCAAGAAAACCACAATCATTTCCAAATGTTT-CTATTTC
63459963 TCCATTTC
1 TCCATTTC
63459971 GCCATTTCTA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
50 3 0.06
51 35 0.69
52 13 0.25
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.43
Consensus pattern (51 bp):
TCCATTTCCATTTTCAAGAAAACCACAATCATTTCCAAATGTTTCTATTTC
Found at i:63463452 original size:46 final size:44
Alignment explanation
Indices: 63463387--63463601 Score: 132
Period size: 46 Copynumber: 4.6 Consensus size: 44
63463377 GTGTCGATGC
*
63463387 CATGTCCCAGACACGGTCTTACACTGGCTCATATCTCAAGTCGAAG
1 CATGTCCCAGACA-TGTCTTACACTGGCTCATATCTCAAG-CGAAG
* *
63463433 CATGTCCCAGACATTGTCTTACACTGACTATCATATCGT--AGCCAATG
1 CATGTCCCAGACA-TGTCTTACACTGGC--TCATATC-TCAAGCGAA-G
* * * * * *
63463480 CATGACCCAGGCATGTCTTACACTAGCTTACTA-CCCAAGGCGGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCA-TATCTCAA-GC-GAAG
** * * *
63463526 CATGTCCCAGACATGTCTTACACAAGCAC-TCGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCAT-ATCTCAA-GC-GAAG
*
63463572 TCATGTCCCAGACATGGTCTTAGACTGGCT
1 -CATGTCCCAGACAT-GTCTTACACTGGCT
63463602 TACACAAGTG
Statistics
Matches: 131, Mismatches: 25, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
44 4 0.03
45 3 0.02
46 77 0.59
47 29 0.22
48 17 0.13
49 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTCATATCTCAAGCGAAG
Found at i:63472955 original size:46 final size:46
Alignment explanation
Indices: 63472888--63473062 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
63472878 TGTAACCCGC
63472888 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* *
63472934 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * **
63472984 CTCA-CA---AACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
63473027 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
63473063 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 1 0.01
46 60 0.56
47 24 0.22
48 1 0.01
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:63473005 original size:93 final size:93
Alignment explanation
Indices: 63472897--63473066 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
63472887 CCCATAAGTG
* **
63472897 AACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
63472962 GAGCTCGGATGCCTAGTTACATCTCACA
66 GAGCTCGGATGCCTAGTTACATCTCACA
63472990 AACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
63473055 GAGTTCGGATGC
66 GAGCTCGGATGC
63473067 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACA
Found at i:63473654 original size:20 final size:18
Alignment explanation
Indices: 63473620--63473656 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
63473610 GCAACTCATA
63473620 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
63473638 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
63473657 ACTTAGCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:63473666 original size:20 final size:19
Alignment explanation
Indices: 63473624--63473667 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
63473614 CTCATAATTT
*
63473624 CAACTATTTTACACATTTA
1 CAACTATTTTACACACTTA
63473643 CAACTCATTTTACA-ACTTA
1 CAACT-ATTTTACACACTTA
63473662 GCAACT
1 -CAACT
63473668 TACCCCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.36
Consensus pattern (19 bp):
CAACTATTTTACACACTTA
Found at i:63476132 original size:40 final size:40
Alignment explanation
Indices: 63476095--63476279 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
63476085 GCTACTCGTT
*
63476095 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
63476135 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
63476175 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
63476214 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
63476255 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63476280 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.62
41 14 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:63476206 original size:79 final size:82
Alignment explanation
Indices: 63476095--63476279 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
63476085 GCTACTCGTT
* * * *
63476095 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTC-GGATCTTAACCC
* *
63476158 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
63476175 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGATCTTAACCCG
* *
63476238 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
63476255 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63476280 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:63484370 original size:79 final size:82
Alignment explanation
Indices: 63484259--63484443 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
63484249 GCTACTCGTT
* * *
63484259 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
63484322 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
63484339 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
63484402 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
63484419 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63484444 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:63484443 original size:40 final size:40
Alignment explanation
Indices: 63484240--63484443 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
63484230 CGGAGTTTAA
** *
63484240 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63484280 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63484320 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63484359 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
63484399 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63484439 CCGGA
1 CCGGA
63484444 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63488981 original size:43 final size:43
Alignment explanation
Indices: 63488920--63489001 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
63488910 TTCAACGAAC
*
63488920 TCGTACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTGTA
1 TCGTACACTTAGCGCCAATTAATTAGCCAAGGCTATAATTGTA
*
63488963 TCGTACACTTAGCGCCAATTAATTAGCCGAGGCTATAAT
1 TCGTACACTTAGCGCCAATTAATTAGCCAAGGCTATAAT
63489002 ATCGCACACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (43 bp):
TCGTACACTTAGCGCCAATTAATTAGCCAAGGCTATAATTGTA
Found at i:63489020 original size:40 final size:41
Alignment explanation
Indices: 63488924--63489026 Score: 136
Period size: 43 Copynumber: 2.5 Consensus size: 41
63488914 ACGAACTCGT
*
63488924 ACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTGTATCGT
1 ACACTTAGTGCCAATTAATTAGCCAAGGCTATAA-T-TATCGC
* *
63488967 ACACTTAGCGCCAATTAATTAGCCGAGGCTATAA-TATCGC
1 ACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTATCGC
* *
63489007 ACACATAGTGCCAATCAATT
1 ACACTTAGTGCCAATTAATT
63489027 CAAACGAACT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
40 22 0.41
43 32 0.59
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (41 bp):
ACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTATCGC
Found at i:63495482 original size:43 final size:43
Alignment explanation
Indices: 63495435--63495584 Score: 212
Period size: 43 Copynumber: 3.5 Consensus size: 43
63495425 AACGAACTCG
*
63495435 CACACTTAGTGCCAATTAATTAGCTGAAACTATAATTGTATCA
1 CACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTATCA
* *
63495478 CACACTTAGTGCTAATTAATTAGCT-AAGGCTATAATTGTACCA
1 CACACTTAGTGCCAATTAATTAGCTGAA-GCTATAATTGTATCA
* * * *
63495521 CACACTTAGCGCCAATTAATTAGATGAGGCTATAATTGTATCG
1 CACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTATCA
*
63495564 TACACTTAGTGCCAATTAATT
1 CACACTTAGTGCCAATTAATT
63495585 CAACCAAACT
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 2 0.02
43 91 0.97
44 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (43 bp):
CACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTATCA
Found at i:63496830 original size:6 final size:6
Alignment explanation
Indices: 63496812--63496899 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
63496802 AAGAAACATT
* * *
63496812 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAAA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
63496861 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
63496900 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:63496859 original size:31 final size:31
Alignment explanation
Indices: 63496821--63496899 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
63496811 TATCAGAACT
* *
63496821 AGAATCAGAATTAGAATCAAAATCAGGTGAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
**
63496852 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
*
63496883 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
63496900 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAAATCAGGTAAC
Found at i:63497054 original size:27 final size:26
Alignment explanation
Indices: 63497017--63497102 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 26
63497007 AGCATGGCTG
* *
63497017 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
63497043 CCAGATACAGATATTTTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
63497070 CCAGAACAGATATTTGTGGCATAACCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
63497097 CCAGAA
1 CCAGAA
63497103 TCACATAATG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.24
27 39 0.76
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:63497124 original size:27 final size:27
Alignment explanation
Indices: 63497041--63497124 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 27
63497031 GTGATAGAGT
* * *
63497041 CACCAGATACAGATAT-TTTGGCAGAGC
1 CACCAGA-ACACATATATGTGGCAAAGC
* *
63497068 CACCAGAACAGATATTTGTGGCATAA-C
1 CACCAGAACACATATATGTGGCA-AAGC
63497095 CACCAGAATCACATA-ATGTGGCAAAGC
1 CACCAGAA-CACATATATGTGGCAAAGC
63497122 CAC
1 CAC
63497125 TTAACAGAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
26 10 0.20
27 33 0.67
28 6 0.12
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (27 bp):
CACCAGAACACATATATGTGGCAAAGC
Found at i:63497959 original size:27 final size:27
Alignment explanation
Indices: 63497688--63497964 Score: 324
Period size: 27 Copynumber: 10.3 Consensus size: 27
63497678 GGGGCAAAAT
* * *
63497688 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
63497715 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
63497742 GATAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63497769 GATAATTCTA-CCTCATAGGGGTATTTC
1 GGTAATTCTACCCT-ACAGGGGTATTTC
* *
63497796 AGTAATTCTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63497823 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
63497850 AGTAATTCTACCATACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63497877 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
63497904 AGTAATTCTGCACTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
63497931 GGTAATTCTACCCTATAGGGTTCTCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63497958 GGTAATT
1 GGTAATT
63497965 TTGTAAATCG
Statistics
Matches: 213, Mismatches: 34, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 207 0.97
28 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:63498092 original size:79 final size:81
Alignment explanation
Indices: 63497984--63498179 Score: 220
Period size: 79 Copynumber: 2.4 Consensus size: 81
63497974 GAGGGTAAAA
* * * ** *
63497984 TGGTAATTCTGTAAA-TCAAGGGTACTTTGGTAATTTTACAGGTCGAG-GGTATTTCAATAATTT
1 TGGTAATTTTATAAACT-AAGGGTATTTTGGTAATTTTACA-AACCAGTGGTATTTCAATAATTT
* *
63498047 TGC-AATCAGGGGTA-TT
64 TACAAACCAGGGGTATTT
* ***
63498063 TGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTA
1 TGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTCAATAATTTTA
63498128 CAAACCAGGGGTATTT
66 CAAACCAGGGGTATTT
* *
63498144 TGGTGATTTTATAAACTAAGGGTATTTTAGTAATTT
1 TGGTAATTTTATAAACTAAGGGTATTTTGGTAATTT
63498180 GGTAAACAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 3 0.03
79 49 0.50
80 11 0.11
81 35 0.36
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (81 bp):
TGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTCAATAATTTTA
CAAACCAGGGGTATTT
Found at i:63498097 original size:27 final size:27
Alignment explanation
Indices: 63498053--63498179 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
63498043 ATTTTGCAAT
*
63498053 CAGGGGTA-TTTGGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
63498079 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
63498106 CAGTGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
63498133 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
63498160 TAAGGGTATTTTAGTAATTT
1 CAGGGGTATTTTGGTAATTT
63498180 GGTAAACAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 7 0.08
27 82 0.92
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:63500144 original size:6 final size:6
Alignment explanation
Indices: 63500126--63500190 Score: 71
Period size: 6 Copynumber: 10.7 Consensus size: 6
63500116 AAGAAACATT
* *
63500126 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
63500175 ATCAGA ATCAGA ATCA
1 ATCAGA ATCAGA ATCA
63500191 ATATTAGGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
5 2 0.04
6 44 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:63500177 original size:31 final size:31
Alignment explanation
Indices: 63500140--63500219 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
63500130 GAACTAGAAT
*
63500140 CAGAATCAGAATCAGAATCAGA-ATTAGGTGA
1 CAGAATCAGAATCAGAATCA-ATATTAGGTAA
63500171 CAGAATCAGAATCAGAATCAATATTAGGTAA
1 CAGAATCAGAATCAGAATCAATATTAGGTAA
*
63500202 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
63500220 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 1 0.02
31 45 0.98
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAATATTAGGTAA
Found at i:63500386 original size:27 final size:26
Alignment explanation
Indices: 63500339--63500444 Score: 104
Period size: 27 Copynumber: 4.0 Consensus size: 26
63500329 CATGGCTGCT
* ** *
63500339 AGAACAGATATTGTGATAGAGTCACC
1 AGAACAGATATTTTGGCAGAGCCACC
63500365 AGATACAGATATTTTGGCAGAGCCACC
1 AGA-ACAGATATTTTGGCAGAGCCACC
* *
63500392 AGAATAGATATTTGTGGCATAGCCACC
1 AGAACAGATATTT-TGGCAGAGCCACC
* * *
63500419 AGAATCAGATAATGTGGCAAAGCCAC
1 AGAA-CAGATATTTTGGCAGAGCCAC
63500445 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.18
27 49 0.73
28 6 0.09
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.22
Consensus pattern (26 bp):
AGAACAGATATTTTGGCAGAGCCACC
Found at i:63501250 original size:27 final size:27
Alignment explanation
Indices: 63501026--63501257 Score: 275
Period size: 27 Copynumber: 8.6 Consensus size: 27
63501016 TACCCCATGA
* * *
63501026 GGGTATCTCGATAATTCTGCCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
63501053 GGGTATTTTGATAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
63501080 GGGTATTTCAGTAATTCTACCCTAGAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
63501107 GGGTATTTCGATGATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
63501134 GTGTATTTCAGTAATTCTACCATACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
63501161 GGGTATTTTGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
63501188 GGGTATTTTGGTAATTCTGCCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
63501215 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
63501242 GGTTCTTTCAGTAATT
1 GGGTATTTCGGTAATT
63501258 TTGTAAATTG
Statistics
Matches: 174, Mismatches: 31, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 174 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTACAG
Found at i:63501327 original size:27 final size:26
Alignment explanation
Indices: 63501297--63501448 Score: 126
Period size: 27 Copynumber: 5.7 Consensus size: 26
63501287 GTAAATCAAT
*
63501297 GGTACTTCGGTAATTTTACAAGTC-GAG
1 GGTATTTCGGTAATTTTACAA-TCAG-G
**
63501324 GGTATTTCTATAATTTTACAATCAGG
1 GGTATTTCGGTAATTTTACAATCAGG
* * *
63501350 GGTATTTTGGTAATTTTATAAACTAGG
1 GGTATTTCGGTAATTTTACAATC-AGG
** * *
63501377 GGTATTTTTGTAATTTTACAAACCAGT
1 GGTATTTCGGTAATTTTAC-AATCAGG
* *
63501404 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTCGGTAATTTTAC-AATCAGG
* *
63501431 GGTATTTTGGTGATTTTA
1 GGTATTTCGGTAATTTTA
63501449 TAAACCAAGG
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
26 21 0.20
27 83 0.78
28 3 0.03
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAATCAGG
Found at i:63501432 original size:54 final size:54
Alignment explanation
Indices: 63501296--63501473 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 54
63501286 TGTAAATCAA
* * ** * * *
63501296 TGGTACTTCGGTAATTTTACAAGTC-GAGGGTATTTCTATAATTTTAC-AATCAG
1 TGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTTGTAATTTTACAAACCAG
* * *
63501349 GGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTTGTAATTTTACAAACCAG
1 TGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTTGTAATTTTACAAACCAG
* * *
63501403 TGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAG
1 TGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTTGTAATTTTACAAACC-AG
*
63501458 -GGTATTTTAGTAATTT
1 TGGTATTTTGGTAATTT
63501474 GGTAAACTAA
Statistics
Matches: 105, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 36 0.34
54 67 0.64
55 2 0.02
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (54 bp):
TGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTTGTAATTTTACAAACCAG
Found at i:63501453 original size:27 final size:27
Alignment explanation
Indices: 63501334--63501473 Score: 192
Period size: 27 Copynumber: 5.2 Consensus size: 27
63501324 GGTATTTCTA
*
63501334 TAATTTTAC-AATCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * *
63501360 TAATTTTATAAACTAGGGGTATTTTTG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
63501387 TAATTTTACAAACCAGTGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
63501414 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * * *
63501441 TGATTTTATAAACCAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
63501468 TAATTT
1 TAATTT
63501474 GGTAAACTAA
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 8 0.08
27 91 0.92
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTGG
Found at i:63510418 original size:14 final size:14
Alignment explanation
Indices: 63510395--63510427 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
63510385 GAATTAGGGC
*
63510395 AATTTTGTAGCTAA
1 AATTTCGTAGCTAA
63510409 AATTTCGTAGCTAA
1 AATTTCGTAGCTAA
63510423 AATTT
1 AATTT
63510428 AGTTAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.42
Consensus pattern (14 bp):
AATTTCGTAGCTAA
Found at i:63510677 original size:6 final size:6
Alignment explanation
Indices: 63510644--63510702 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
63510634 TGATCTCCGT
* * *
63510644 AATTAA AA-T-A AA-TAA AACTAA CATTAA AATTAA AAATAA AGATTAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA A-ATTAA
63510690 AATTAA AATTAA A
1 AATTAA AATTAA A
63510703 GAAAATATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 32 0.71
7 5 0.11
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (6 bp):
AATTAA
Found at i:63510688 original size:19 final size:19
Alignment explanation
Indices: 63510666--63510704 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
63510656 TAAAACTAAC
63510666 ATTAAAATTAAAAATAAAG
1 ATTAAAATTAAAAATAAAG
*
63510685 ATTAAAATTAAAATTAAAG
1 ATTAAAATTAAAAATAAAG
63510704 A
1 A
63510705 AAATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (19 bp):
ATTAAAATTAAAAATAAAG
Found at i:63510698 original size:25 final size:24
Alignment explanation
Indices: 63510653--63510733 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 24
63510643 TAATTAAAAT
* *
63510653 AAATAAAACTAACATTAAAATTAA
1 AAATAAAATTAAAATTAAAATTAA
63510677 AAATAAAGATTAAAATTAAAATTAA
1 AAATAAA-ATTAAAATTAAAATTAA
* * *
63510702 AGAA-AATATAAAAATGAGAAA-TAA
1 A-AATAAAATTAAAATTA-AAATTAA
63510726 AAATAAAA
1 AAATAAAA
63510734 CTAAGATAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 2 0.04
24 22 0.47
25 21 0.45
26 2 0.04
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.22
Consensus pattern (24 bp):
AAATAAAATTAAAATTAAAATTAA
Found at i:63532842 original size:21 final size:21
Alignment explanation
Indices: 63532816--63532856 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63532806 TACATATCAC
63532816 TATTAAACTACTTGTATTTTA
1 TATTAAACTACTTGTATTTTA
* *
63532837 TATTAAATTATTTGTATTTT
1 TATTAAACTACTTGTATTTT
63532857 CTGTATTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
TATTAAACTACTTGTATTTTA
Found at i:63533779 original size:123 final size:123
Alignment explanation
Indices: 63533558--63533779 Score: 293
Period size: 123 Copynumber: 1.8 Consensus size: 123
63533548 TTTCGAGAAC
* * * * * * *
63533558 AAGGCAATGTTTCGTATTTGGAAATTCCGAAAATCGTGCCTTAGCGTACTGGGTTTCGATTTTCT
1 AAGGCAATATTTCATATTTGAAAATTCCGAAAATCGTGCCCTAACGTACTGGGTTTCGATTTACC
* * * * *
63533623 GTTTGATCAAATGACCAAATATCCTTTTTAAATTCCGTCTTTGTTTTCTTCAACAAAA
66 GATTGACCAAATAACCAAATACCCTTTTAAAATTCCGTCTTTGTTTTCTTCAACAAAA
63533681 AAGGCAATATTTCATATTTGAAAATT-CGAGAAATCGTGCCCTAACGTACTGGGTTTCGATTTAC
1 AAGGCAATATTTCATATTTGAAAATTCCGA-AAATCGTGCCCTAACGTACTGGGTTTCGATTTAC
***
63533745 CGATTGACCAAATAATTGAATACCCTTTTAAAATT
65 CGATTGACCAAATAACCAAATACCCTTTTAAAATT
63533780 TCAATGCATG
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
122 3 0.04
123 80 0.96
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (123 bp):
AAGGCAATATTTCATATTTGAAAATTCCGAAAATCGTGCCCTAACGTACTGGGTTTCGATTTACC
GATTGACCAAATAACCAAATACCCTTTTAAAATTCCGTCTTTGTTTTCTTCAACAAAA
Found at i:63541642 original size:28 final size:28
Alignment explanation
Indices: 63541599--63541661 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
63541589 AAAGGCAGCC
*
63541599 AAAAAGAAAAACAAAAGTACAAAA-AATA
1 AAAAAGAAAAACAAAAATA-AAAATAATA
*
63541627 AAAAAGAAAAAGAAAAATAAAAATAATA
1 AAAAAGAAAAACAAAAATAAAAATAATA
63541655 AACAAAG
1 AA-AAAG
63541662 GTCATAGTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 4 0.13
28 23 0.74
29 4 0.13
ACGTcount: A:0.79, C:0.05, G:0.08, T:0.08
Consensus pattern (28 bp):
AAAAAGAAAAACAAAAATAAAAATAATA
Found at i:63542213 original size:17 final size:16
Alignment explanation
Indices: 63542187--63542227 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
63542177 GACCCTAGAA
63542187 AAAAATAAATAAAAAAAG
1 AAAAA-AAAT-AAAAAAG
*
63542205 AAAAAAAATCAAAAAG
1 AAAAAAAATAAAAAAG
63542221 AAAAAAA
1 AAAAAAA
63542228 GAGAAGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 13 0.59
17 4 0.18
18 5 0.23
ACGTcount: A:0.85, C:0.02, G:0.05, T:0.07
Consensus pattern (16 bp):
AAAAAAAATAAAAAAG
Found at i:63543635 original size:44 final size:45
Alignment explanation
Indices: 63543587--63543686 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 45
63543577 TTTAGCCACC
**
63543587 AGTCTTATCTCT-CTGAGGTAGCAAAAG-AGCAGGTTGAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAG-AAAAGAAGCAGACTGAAGATTGT
* * *
63543631 AGTCTTATCT-TCCTGGGGTAGTAAGGAAGCAGACTGAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAGAAAAGAAGCAGACTGAAGATTGT
63543675 AGATCTTATCTC
1 AG-TCTTATCTC
63543687 CTTAAGTAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.09
44 35 0.74
45 8 0.17
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (45 bp):
AGTCTTATCTCTCCTGAGGTAGAAAAGAAGCAGACTGAAGATTGT
Found at i:63543714 original size:44 final size:44
Alignment explanation
Indices: 63543621--63544202 Score: 112
Period size: 44 Copynumber: 13.2 Consensus size: 44
63543611 AAGAGCAGGT
**
63543621 TGAAGATTGTAGTCTTATCTTCCTGGGGTAGTAAGGAAGCAGAC
1 TGAAGATTGTAGTCTTATCTTCCTGAAGTAGTAAGGAAGCAGAC
* *
63543665 TGAAGATTGTAGATCTTATC-TCCTTAAGTAGTAGTGGAA-CAGA-
1 TGAAGATTGTAG-TCTTATCTTCCTGAAGTAGTA-AGGAAGCAGAC
* * * * * * * * * *
63543708 TCGAAGATGGCGAATCTTATCTT-TTAGAGGTAGCAGGGGAGTAGAT
1 T-GAAGATTG-TAGTCTTATCTTCCT-GAAGTAGTAAGGAAGCAGAC
** ***** * ** * * ** **
63543754 TTTAGCCACCAGCCTTATCTTTTTGAGGTAGCAAAAAAGCAGGT
1 TGAAGATTGTAGTCTTATCTTCCTGAAGTAGTAAGGAAGCAGAC
*
63543798 TGAAGATTGTAGTCTTATCTTCCT-AAGGTAGTATGGAAGCAGAC
1 TGAAGATTGTAGTCTTATCTTCCTGAA-GTAGTAAGGAAGCAGAC
* * *
63543842 TGAAGATTGTAGATCTT-TCTCCCT-AAGCAGT-AGTGGAGCAGAC
1 TGAAGATTGTAG-TCTTATCTTCCTGAAGTAGTAAG-GAAGCAGAC
** * * * * ** * * *
63543885 CAAAGATGGCAAATCTTATCTT-TTCGGGGTAG-CAGGCGAGCAGAT
1 TGAAGATTG-TAGTCTTATCTTCCT-GAAGTAGTAAGG-AAGCAGAC
** **** * * * * * * *
63543930 TTCAGCCACTAGCCTTATCTCCCTTAGGTAGCAAGGGAGCAGGC
1 TGAAGATTGTAGTCTTATCTTCCTGAAGTAGTAAGGAAGCAGAC
* * * * *
63543974 TGAAGATTATTGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAAC
1 TGAAGATTGTAGTCTTATCTTCCTGAAGTAGTAAGGAAGCAGAC
* * * *
63544018 TGAAGATTGAAGATCTTATCTCCCTGAAATAG-CAGTGAAGCAGA-
1 TGAAGATTGTAG-TCTTATCTTCCTGAAGTAGTAAG-GAAGCAGAC
* ** * * * * *
63544062 TCCAAGACAGTGAATCTTATCTT-CTCGAGGCAGCAAGGAAGCAGAT
1 T-GAAGATTGT-AGTCTTATCTTCCT-GAAGTAGTAAGGAAGCAGAC
** **** * * * *
63544108 TTCAGCCACTAGCCTTATCTTCCTGAGGTAGCAAAGG-AGCAGGC
1 TGAAGATTGTAGTCTTATCTTCCTGAAGTAG-TAAGGAAGCAGAC
* * * *
63544152 TGAAGATTATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAT
1 TGAAGATTGTAGTCTTATCTTCCTGAAGTAGTAAGGAAGCAGAC
63544196 TGAAGAT
1 TGAAGAT
63544203 CACAGATCTT
Statistics
Matches: 379, Mismatches: 129, Indels: 60
0.67 0.23 0.11
Matches are distributed among these distances:
42 1 0.00
43 29 0.08
44 237 0.63
45 107 0.28
46 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
TGAAGATTGTAGTCTTATCTTCCTGAAGTAGTAAGGAAGCAGAC
Found at i:63544051 original size:45 final size:44
Alignment explanation
Indices: 63543943--63544220 Score: 156
Period size: 44 Copynumber: 6.2 Consensus size: 44
63543933 AGCCACTAGC
* * ** *
63543943 CTTATCTCCCTTAGGTAGCAAGGGAGCAGGCTGAAGATTATTGT
1 CTTATCTCCCTGAGGTAGCAAGGAAGCAAACTGAAGATTATAGT
*
63543987 CTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAGATTGA-AGAT
1 CTTATCTCCCTGAGGTAGCAAGGAAGCAAACTGAAGATT-ATAG-T
** * * * *
63544032 CTTATCTCCCTGAAATAGC-AGTGAAGCAGA-TCCAAGA-CAGTGAAT
1 CTTATCTCCCTGAGGTAGCAAG-GAAGCAAACT-GAAGATTA-T-AGT
* * * * ** ** *
63544077 CTTATCT-TCTCGAGGCAGCAAGGAAGCAGATTTCAG-CCACTAGC
1 CTTATCTCCCT-GAGGTAGCAAGGAAGCAAACTGAAGATTA-TAGT
* **
63544121 CTTATCTTCCTGAGGTAGCAAAGG-AGCAGGCTGAAGATTATAGT
1 CTTATCTCCCTGAGGTAGC-AAGGAAGCAAACTGAAGATTATAGT
* * * * *
63544165 CTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATCACAGAT
1 CTTATCTCCCTGAGGTAGCAAGGAAGCAAACTGAAGATTATAG-T
63544210 CTTATCTCCCT
1 CTTATCTCCCT
63544221 AAGCAGTAGT
Statistics
Matches: 182, Mismatches: 36, Indels: 31
0.73 0.14 0.12
Matches are distributed among these distances:
43 5 0.03
44 100 0.55
45 73 0.40
46 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTGAGGTAGCAAGGAAGCAAACTGAAGATTATAGT
Found at i:63544346 original size:44 final size:43
Alignment explanation
Indices: 63544298--63544737 Score: 208
Period size: 44 Copynumber: 9.9 Consensus size: 43
63544288 AGCCACCAGC
*
63544298 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAG-GAGCAGATTGAAGATTGTAGT
**
63544342 CTTATCTTCCAAAGGTAGCAAGGAAGCAGATTGAAGATTGAATA-T
1 CTTATCTTCCTGAGGTAGCAAGG-AGCAGATTGAAGATTG--TAGT
* * * * * * *
63544387 CTTATC-TCCTTCAGATAGTAGTGGAGCAGATTGAAGATGGCGAAT
1 CTTATCTTCC-TGAGGTAGCA-AGGAGCAGATTGAAGATTG-TAGT
* * * * * ** ***** *
63544432 CTTATCTTCCCGAGATAGTAGAGGAGTAAATTTTAGCCACCAGC
1 CTTATCTTCCTGAGGTAGCA-AGGAGCAGATTGAAGATTGTAGT
* *
63544476 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTATAGT
1 CTTATCTTC-CTGAGGTAGCAAG-GAGCAGATTGAAGATTGTAGT
* * * *
63544520 CTTATCTTCCTGAGGTAGCTAGGAAACAGATTGATGATTGAAGAT
1 CTTATCTTCCTGAGGTAGCAAGG-AGCAGATTGAAGATTGTAG-T
* * * * * *
63544565 CTTATC-TCCTTGAGATAGTAATGGAGCAGATCGAAGATGGCGAAT
1 CTTATCTTCC-TGAGGTAGCAA-GGAGCAGATTGAAGATTG-TAGT
* * ** ***** *
63544610 CTTATCTTCCCGAGGTAGTAAGGGAGCAGATTTTAGCCACCAGC
1 CTTATCTTCCTGAGGTAGCAA-GGAGCAGATTGAAGATTGTAGT
* * **
63544654 CTTAT-TTCTCTAAGGTAGCAAGAGAGCAGGTCAAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAG-GAGCAGATTGAAGATTGTAGT
*
63544698 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
1 CTTATCTTCCTGAGGTAGCAAGG-AGCAGATTGAAGATTG
63544738 AAGATCTTGT
Statistics
Matches: 290, Mismatches: 85, Indels: 42
0.70 0.20 0.10
Matches are distributed among these distances:
43 11 0.04
44 151 0.52
45 115 0.40
46 13 0.04
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (43 bp):
CTTATCTTCCTGAGGTAGCAAGGAGCAGATTGAAGATTGTAGT
Found at i:63544448 original size:45 final size:44
Alignment explanation
Indices: 63544366--63544457 Score: 107
Period size: 45 Copynumber: 2.0 Consensus size: 44
63544356 GTAGCAAGGA
* *
63544366 AGCAGATTGAAGATTGAATATCTTATCTCCTTCAGATAGTAGTGG
1 AGCAGATTGAAGATGGAATATCTTATCTCC-TCAGATAGTAGAGG
*
63544411 AGCAGATTGAAGATGGCGA-ATCTTATCTTCC-CGAGATAGTAGAGG
1 AGCAGATTGAAGATGG-AATATCTTATC-TCCTC-AGATAGTAGAGG
63544456 AG
1 AG
63544458 TAAATTTTAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
44 1 0.02
45 36 0.88
46 4 0.10
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (44 bp):
AGCAGATTGAAGATGGAATATCTTATCTCCTCAGATAGTAGAGG
Found at i:63544888 original size:178 final size:177
Alignment explanation
Indices: 63543497--63544844 Score: 1632
Period size: 178 Copynumber: 7.6 Consensus size: 177
63543487 GTGAATTCAC
* ** * * *
63543497 AGATCTTATCTCCCTGAGATAGTAGTGGAGCAGATTGAAGATGATGAATCTTATCTTTCTGAGAT
1 AGATCTTATCTCCC-GAGATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGT
* *
63543562 AGCAGGGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTGAGGTAGCAAAAGAGCAGGTTGAAGA
65 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * *
63543627 TTGTAGTCTTATCTTCCTGGGGTAGTAAGGAAGCAGACTGAAGATTGT
130 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
** * ***
63543675 AGATCTTATCTCCTTA-AGTAGTAGTGGAACAGATCGAAGATGGCGAATCTTATCTTTTAGAGGT
1 AGATCTTATCTCCCGAGA-TAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGT
* * * * *
63543739 AGCAGGGGAGTAGATTTTAGCCACCAGCCTTATCTTTTTGAGGTAGCAAAAAAGCAGGTTGAAGA
65 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * * *
63543804 TTGTAGTCTTATCTTCCTAAGGTAGTATGGAAGCAGACTGAAGATTGT
130 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * * * ** *
63543852 AGATCTT-TCTCCCTA-AGCAGTAGTGGAGCAGACCAAAGATGGCAAATCTTATCTTTTCGGGGT
1 AGATCTTATCTCCCGAGA-TAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGT
* * * * * * *
63543915 AGCAGGCGAGCAGATTTCAGCCACTAGCCTTATCTCCCTTAGGTAGCAAGGGAGCAGGCTGAAGA
65 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * *
63543980 TTATTGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAGATTGA
130 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * * ** * * *
63544028 AGATCTTATCTCCCTGAAATAGCAGTGAAGCAGATCCAAGACAGTGAATCTTATCTTCTCGAGGC
1 AGATCTTATCTCCC-GAGATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGT
* * * * *
63544093 AGCAAGGAAGCAGATTTCAGCCACTAGCCTTATCT-TCCTGAGGTAGCAA-AGGAGCAGGCTGAA
65 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCT-CTGAGGTAGCAAGA-GAGCAGGTTGAA
* * *
63544156 GATTATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGA-TCA
128 GATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * * *
63544205 CAGATCTTATCTCCCTA-AGCAGTAGTGGAGCAGATCGAAAATGGCAAATCTTATCTTCTCGAGG
1 -AGATCTTATCTCCCGAGA-TAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGG
*
63544269 TAGCAGGGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
64 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
** *
63544334 ATTGTAGTCTTATCTTCCAAAGGTAGCAAGGAAGCAGATTGAAGATTGA
129 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * *
63544383 ATATCTTATCTCCTTC-AGATAGTAGTGGAGCAGATTGAAGATGGCGAATCTTATCTTCCCGAGA
1 AGATCTTATCTCC--CGAGATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGG
* * * *
63544447 TAGTAGAGGAGTAAATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
64 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
* * * * *
63544512 ATTATAGTCTTATCTTCCTGAGGTAGCTAGGAAACAGATTGATGATTGA
129 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* *
63544561 AGATCTTATCTCCTTGAGATAGTAATGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGT
1 AGATCTTATCTCC-CGAGATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGT
* * * * **
63544626 AGTAAGGGAGCAGATTTTAGCCACCAGCCTTATTTCTCTAAGGTAGCAAGAGAGCAGGTCAAAGA
65 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
63544691 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
130 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * * *
63544739 AGATCTTGTCTCCTCGAGATAGCAGTGGGGCTGATCGAAGATGACGAATCTTATCTTCCCGAGGT
1 AGATCTTATCTCC-CGAGATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGT
* * ** *
63544804 AGTAGGGGAGCAGATTTTAGTCAATAGCCTTATCTCCCTGA
65 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGA
63544845 AGTTACAGTG
Statistics
Matches: 1019, Mismatches: 136, Indels: 30
0.86 0.11 0.03
Matches are distributed among these distances:
176 151 0.15
177 306 0.30
178 559 0.55
179 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (177 bp):
AGATCTTATCTCCCGAGATAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTA
GCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
TGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
Found at i:63549017 original size:43 final size:41
Alignment explanation
Indices: 63548906--63549023 Score: 105
Period size: 43 Copynumber: 2.8 Consensus size: 41
63548896 ACAATTTATG
* * *
63548906 TGTAAGACCAGGTCTAGGACGTTGGCATCGTATTTGATTTCA
1 TGTAAGACCA-CTCTAGGAAGTTGGCATCGTATTTGATTACA
* *
63548948 TGTAAGACC-CTGCCTGGGACAG-TGGCATCGATTTTTGATTACA
1 TGTAAGACCACT--CTAGGA-AGTTGGCATCG-TATTTGATTACA
* *
63548991 TGTAAGACCACATCTAGGATGTTGGCATTGTAT
1 TGTAAGACCAC-TCTAGGAAGTTGGCATCGTAT
63549024 GAGCTTTCTG
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
40 1 0.02
42 25 0.42
43 32 0.53
44 1 0.02
45 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
TGTAAGACCACTCTAGGAAGTTGGCATCGTATTTGATTACA
Found at i:63562387 original size:40 final size:40
Alignment explanation
Indices: 63562304--63562420 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
63562294 TGGAAAAAAA
63562304 TATAACCGGGTTAAGTCCCGAAGGCA-TCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
*
63562343 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
* *
63562383 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
63562421 GTTACATCCG
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 26 0.35
40 48 0.65
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
Found at i:63570260 original size:40 final size:40
Alignment explanation
Indices: 63570177--63570293 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
63570167 TGGAAAAAAA
63570177 TATAACCGGGTTAAGTCCCGAAGGCA-TCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
*
63570216 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
* *
63570256 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
63570294 GTTACATTCA
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 26 0.35
40 48 0.65
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
Found at i:63575558 original size:31 final size:31
Alignment explanation
Indices: 63575513--63575596 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
63575503 TTAGTCTTGA
63575513 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* *
63575543 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
63575574 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
63575597 ACTGTAAACG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:63575671 original size:42 final size:42
Alignment explanation
Indices: 63575620--63575711 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
63575610 TGGCCCTTAG
*
63575620 GCCCATTTCAATATCACATGTAATAT-ATATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATATCA-ATGAATGTATGCAA
*
63575662 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATATCAATGAATGTATGCAA
63575704 GCCCATTT
1 GCCCATTT
63575712 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 46 0.98
43 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATATCAATGAATGTATGCAA
Found at i:63575892 original size:25 final size:25
Alignment explanation
Indices: 63575859--63575932 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
63575849 CTCTTTTAAT
* * *
63575859 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTCAG-CA
63575884 AACTGGGGCAAAGCCCTTTTCAGCA
1 AACTGGGGCAAAGCCCTTTTCAGCA
*
63575909 AACTGGGGCAGAGCCCTTTT-AGCA
1 AACTGGGGCAAAGCCCTTTTCAGCA
63575933 CTTCCTCCAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.09
25 35 0.80
26 5 0.11
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAGCA
Found at i:63576767 original size:27 final size:27
Alignment explanation
Indices: 63576737--63576801 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
63576727 GGGCATATTT
63576737 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
63576764 GTCACTTTACCCTACAGGGGCTTTATG
1 GTCATTTTACCATACAAGGGCTTTACG
*
63576791 GTCTTTTTACC
1 GTCATTTTACC
63576802 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:63576885 original size:27 final size:27
Alignment explanation
Indices: 63576832--63577101 Score: 184
Period size: 27 Copynumber: 9.9 Consensus size: 27
63576822 TTTCATCCTA
* * * *
63576832 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* **
63576859 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * *
63576886 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-C
* ** *
63576915 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
* *
63576942 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
** ** * *
63576969 TGAGGGTATTTCGGTACTTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
*
63576996 CAATGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * *
63577023 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * * * **
63577050 TAGGGGTATTTTGGTAATTCTATCCTA-
1 CAAGGGTATTTTAGTAATTTTA-CAAAC
* *
63577077 CAGGGGTATTTTAGTAATTTCACAA
1 CAAGGGTATTTTAGTAATTTTACAA
63577102 TCGAGGGTAA
Statistics
Matches: 193, Mismatches: 45, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 161 0.83
28 18 0.09
29 13 0.07
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAC
Found at i:63576956 original size:110 final size:107
Alignment explanation
Indices: 63576831--63577101 Score: 276
Period size: 108 Copynumber: 2.5 Consensus size: 107
63576821 ATTTCATCCT
* * ***
63576831 ACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATT
1 ACAAGGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATT
* * * **
63576896 TCTA-TAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAA
66 T-TAGTAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTACAA
* *** * *
63576940 ATCAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTACTTTCACAAACCAATGGTAT
1 A-CAAGGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTAT
*
63577005 TTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAA
65 TTTAGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAA
* ** * *
63577048 ACTAGGGGTATTTTGGTAATTCTATCCTA-CAGGGGTATTTTAGTAATTTCACAA
1 AC-AAGGGTATTTTGGTAATTCTA-CAAACCAAGGGTATTTCAGTAATTTCACAA
63577102 TCGAGGGTAA
Statistics
Matches: 131, Mismatches: 27, Indels: 9
0.78 0.16 0.05
Matches are distributed among these distances:
107 1 0.01
108 59 0.45
109 14 0.11
110 57 0.44
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (107 bp):
ACAAGGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATT
TTAGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAA
Found at i:63577085 original size:81 final size:81
Alignment explanation
Indices: 63576915--63577110 Score: 204
Period size: 81 Copynumber: 2.4 Consensus size: 81
63576905 TTTAGAAAGT
* ** *
63576915 CAAGGGTATTTTTGTAATTTTGTAAATCAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTT
*
63576980 CGGTACTTTCACAAAC
66 CGGTAATTTCACAAAC
* *
63576996 CAATGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTAT
1 CAAGGGTATTTTAGTAATTTTACAAATC-AAGGGTATTTTGGTAATTTTACAAA-TAGAGGGTAT
* **
63577059 TTTGGTAA-TTCTATCCTA-
64 TTCGGTAATTTC-A-CAAAC
* * *
63577077 CAGGGGTATTTTAGTAATTTCAC-AATCGAGGGTA
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTA
63577111 AAACGGTAAT
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
80 11 0.12
81 80 0.84
82 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTT
CGGTAATTTCACAAAC
Found at i:63577134 original size:27 final size:27
Alignment explanation
Indices: 63577100--63577351 Score: 290
Period size: 27 Copynumber: 9.3 Consensus size: 27
63577090 GTAATTTCAC
* *
63577100 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
63577127 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
** * *
63577154 AATTAAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
63577181 AATCGAGGGTGAAACGGCAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63577208 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
63577235 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
63577262 AATCAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
63577289 AATCGAGGGTGAAACAGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
** *
63577316 AATCGAGGGTAAAATAGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
63577343 AATCGAGGG
1 AATCGAGGG
63577352 CATTTCAGTA
Statistics
Matches: 196, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 195 0.99
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:63577217 original size:81 final size:81
Alignment explanation
Indices: 63577100--63577351 Score: 337
Period size: 81 Copynumber: 3.1 Consensus size: 81
63577090 GTAATTTCAC
* * **
63577100 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATTAAGGGT
1 AATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATAAATCGAGGGT
63577164 AAAATGATAATTCTATA
65 AAAATGATAATTCTATA
* * * *
63577181 AATCGAGGGTGAAACGGCAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
*
63577246 AAATGGTAATTCTATA
66 AAATGATAATTCTATA
* * ** *
63577262 AATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACAGTAATTCTACAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
*
63577327 AAAT-AGTAATTCTACA
66 AAATGA-TAATTCTATA
63577343 AATCGAGGG
1 AATCGAGGG
63577352 CATTTCAGTA
Statistics
Matches: 148, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
81 147 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
AAATGATAATTCTATA
Found at i:63577363 original size:81 final size:81
Alignment explanation
Indices: 63577088--63577371 Score: 218
Period size: 81 Copynumber: 3.5 Consensus size: 81
63577078 AGGGGTATTT
* * * * ** *
63577088 TAGTAATT-T-CACAATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTT
1 TAGTAATTCTACA-AATCAAGGGCAAAACAGTAATTTGGTAAATC-GAGGGTAAAACAGTAATTC
** **
63577150 TGTAAATTAAGGGTAAAA
64 TACAAATCGAGGGTAAAA
* * ** * * * **
63577168 T-GATAATTCTATAAATCGAGGGTGAAACGGCAATTCT-ATAAATCGAGGGTAAAATGGTAATTC
1 TAG-TAATTCTACAAATCAAGGGCAAAACAGTAATT-TGGTAAATCGAGGGTAAAACAGTAATTC
*
63577231 TATAAATCGAGGGTAAAA
64 TACAAATCGAGGGTAAAA
* * * * * *
63577249 TGGTAATTCTATAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACAGTAATTCTA
1 TAGTAATTCTACAAATCAAGGGCAAAACAGTAATTTGGTAAATCGAGGGTAAAACAGTAATTCTA
63577314 CAAATCGAGGGTAAAA
66 CAAATCGAGGGTAAAA
* ***
63577330 TAGTAATTCTACAAATCGAGGGCATTTCAGTAATTTGGTAAA
1 TAGTAATTCTACAAATCAAGGGCAAAACAGTAATTTGGTAAA
63577372 CTAAAGTGTT
Statistics
Matches: 172, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
79 1 0.01
80 7 0.04
81 160 0.93
82 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
TAGTAATTCTACAAATCAAGGGCAAAACAGTAATTTGGTAAATCGAGGGTAAAACAGTAATTCTA
CAAATCGAGGGTAAAA
Found at i:63587993 original size:40 final size:40
Alignment explanation
Indices: 63587939--63588122 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
63587929 CTCACACAAG
* * *
63587939 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
63587979 GCCTTTGGGACTTAGCCCGGATATAGT-AGCTAGCACAGAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCA-CTAGCACAAAT
* * *
63588019 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
63588059 GCCTTC-GGATCTTAGTCTGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAAT
63588099 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
63588123 CATTCGAATA
Statistics
Matches: 119, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 3 0.03
40 111 0.93
41 5 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:63590441 original size:42 final size:43
Alignment explanation
Indices: 63590344--63591057 Score: 912
Period size: 43 Copynumber: 16.8 Consensus size: 43
63590334 CATCCAACGT
* * *
63590344 CCTAGGTTGCCTATGGTGCCCGAGGCTCCCGCATGACTAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63590387 CCTAGGTTACCGATGGTACCCGAGGCTCCCGC-CGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63590429 CCTAGGTTACCGATGGTGTCCGAGGCTCCCGTAC-ATCCAA--G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
63590470 CACGAAGCTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 C-CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63590514 CCTAGG-TGTCGATGGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63590556 CCTAGGTTGCCGATGGTGCCCGAGGATCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63590599 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63590642 CCTAGGTTGCCGATGGTG-CCGAGACTCCCGCACGACCAAGTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63590684 CCTAGGTTACCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
63590727 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
63590770 CCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63590812 CCTAGGTTGCCGATGGTGTCTGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63590855 CCTAGGTTGCGGATGGTG-CCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63590897 CCTAGGTTGCGGATGGTG-CCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
63590939 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63590982 CCTAGGTTGCCGATGGTGCCCGAGGCTACCGTACGACCAAGGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63591025 CTTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
63591058 ATCCTTGCAC
Statistics
Matches: 605, Mismatches: 54, Indels: 25
0.88 0.08 0.04
Matches are distributed among these distances:
41 2 0.00
42 277 0.46
43 324 0.54
44 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:63590452 original size:85 final size:86
Alignment explanation
Indices: 63590344--63591057 Score: 912
Period size: 85 Copynumber: 8.4 Consensus size: 86
63590334 CATCCAACGT
* * * * *
63590344 CCTAGGTTGCCTATGGTGCCCGAGGCTCCCGCATGACTAAGGGCCTAGGTTACCGATGGTACCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
63590409 AGGCTCCCGC-CGACCAAGGG
66 AGGCTCCCGCACGACCAAGGG
* * * * * * *
63590429 CCTAGGTTACCGATGGTGTCCGAGGCTCCCGTAC-ATCCAA--GCACGAAGCTACCGATGGTGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CTAGGTTGCCGATGGTGCC
*
63590491 CGAGGCTCCCGCACGACCAGGGG
64 CGAGGCTCCCGCACGACCAAGGG
* * *
63590514 CCTAGG-TGTCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
63590578 AGGATCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAAGGG
* *
63590599 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTG-CCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
63590663 AGACTCCCGCACGACCAAGTG
66 AGGCTCCCGCACGACCAAGGG
* * * *
63590684 CCTAGGTTACCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
63590748 GAGGCTCCCGTAC-ATCCAAGCG
65 GAGGCTCCCGCACGA-CCAAGGG
* * * * *
63590770 CCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
63590834 AGGCTCCCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGG
* * *
63590855 CCTAGGTTGCGGATGGTG-CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCGGATGGTG-CCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
63590918 AGGCTCTCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGG
*
63590939 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
63591004 AGGCTACCGTACGACCAAGGT
66 AGGCTCCCGCACGACCAAGGG
* * *
63591025 CTTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
63591058 ATCCTTGCAC
Statistics
Matches: 553, Mismatches: 61, Indels: 30
0.86 0.09 0.05
Matches are distributed among these distances:
83 2 0.00
84 93 0.17
85 331 0.60
86 127 0.23
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (86 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGG
Found at i:63591134 original size:42 final size:42
Alignment explanation
Indices: 63590439--63591142 Score: 169
Period size: 42 Copynumber: 16.6 Consensus size: 42
63590429 CCTAGGTTAC
* * * * * **
63590439 CGATGGTGTCCGAGGCTCCCGTACATCCAAGCACGAAGCTAC
1 CGATGGTGCCCGAGGCTCCCGCACATCCTAGCACCAAGGTGT
** *
63590481 CGATGGTGCCCGAGGCTCCCGCACGA-CC-AGGGGCCTAGGTGT
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCTA-GCACCAAGGTGT
* ** * *
63590523 CGATGGTGCCCGAGGCTCTCGCACGA-CC-AGGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCTA-GCACCAAGG-TGT
* ** * *
63590566 CGATGGTGCCCGAGGATCCCGCACGA-CC-AGGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCTA-GCACCAAGG-TGT
* ** * *
63590609 CGATGGTGCCCGAGGCTCTCGCACGA-CC-AGGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCTA-GCACCAAGG-TGT
* * ** *
63590652 CGATGGTG-CCGAGACTCCCGCACGA-CCAAGTGCCTAGGT-T
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCTAGCACCAAGGTGT
* * * ** * *
63590692 ACCGATGGTGTCCGAGGCTTCCGCACATCCAAGGGCCTAGGTTGC
1 --CGATGGTGCCCGAGGCTCCCGCACATCCTAGCACCAAGG-TGT
* * * * *
63590737 CGATGGTGTCCGAGGCTCCCGTACATCCAAGCGCCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCTAGCACCAAGGTGT
* * * ** * *
63590779 CGATGGTGTCCGAGGCTCCCGTACGA-CCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCTAGCACCAAGG-TGT
* * * ** *
63590822 CGATGGTGTCTGAGGCTCCCGCACGA-CCAAGGGCCTAGGT-T
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCTAGCACCAAGGTGT
* * ** *
63590863 GCGGATGGTG-CCGAGGCTCTCGCACGA-CCAAGGGCCTAGGT-T
1 -C-GATGGTGCCCGAGGCTCCCGCAC-ATCCTAGCACCAAGGTGT
* * ** * *
63590905 GCGGATGGTG-CCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGC
1 -C-GATGGTGCCCGAGGCTCCCGCAC-ATCCTAGCACCAAGG-TGT
* * ** * *
63590949 CGATGGTGCCCGAGGCTCCCGTACGA-CCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCTAGCACCAAGG-TGT
* * * ** ** *
63590992 CGATGGTGCCCGAGGCTACCGTACGA-CCAAGGTCTTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCTAGCACCAAGG-TGT
* * *
63591035 CAATGGTG-CCGAGGCTCTCGCACATCCTTGCACCAAGGTGT
1 CGATGGTGCCCGAGGCTCCCGCACATCCTAGCACCAAGGTGT
* * *
63591076 CGGTGGTGCCCAAGGCTCCCGCACATCCTAGCACGAAGGTG-
1 CGATGGTGCCCGAGGCTCCCGCACATCCTAGCACCAAGGTGT
* *
63591117 CTGATGGT-CACTGAGGCTCCTGCACA
1 C-GATGGTGC-CCGAGGCTCCCGCACA
63591143 ACCAAGAGCC
Statistics
Matches: 580, Mismatches: 61, Indels: 42
0.85 0.09 0.06
Matches are distributed among these distances:
41 13 0.02
42 283 0.49
43 283 0.49
44 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (42 bp):
CGATGGTGCCCGAGGCTCCCGCACATCCTAGCACCAAGGTGT
Found at i:63591513 original size:24 final size:25
Alignment explanation
Indices: 63591476--63591551 Score: 84
Period size: 24 Copynumber: 3.1 Consensus size: 25
63591466 CTATATTCCA
* *
63591476 GAATGGCTCACCGGAGCACCGCCGG
1 GAATAGCTCGCCGGAGCACCGCCGG
*
63591501 GAA-AGCTCGCCGGAGCACCGCC-T
1 GAATAGCTCGCCGGAGCACCGCCGG
* * *
63591524 GAATGGATTGCCGGAGCACCGCCGG
1 GAATAGCTCGCCGGAGCACCGCCGG
63591549 GAA
1 GAA
63591552 CCTAACCGGC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
23 3 0.07
24 33 0.79
25 6 0.14
ACGTcount: A:0.22, C:0.33, G:0.36, T:0.09
Consensus pattern (25 bp):
GAATAGCTCGCCGGAGCACCGCCGG
Found at i:63592824 original size:182 final size:180
Alignment explanation
Indices: 63592508--63592849 Score: 497
Period size: 182 Copynumber: 1.9 Consensus size: 180
63592498 TCCTGTTGGC
* * * * *
63592508 CCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGATGGCATGGTAGAGAATTAAACAAGTG
1 CCAAAACAAATACAAGAAGCCGAATGAAATATGGCAGGACGGCATGGCAGAAAATTAAACAAGTG
* * * *
63592573 CCCGGACCACCAACAGTTGAGAGCTCGCACCCGCACCACCGCGGCCCCCGTTGTGCCATGTTTCC
66 CCCAGACCACCAACAGTTGAGAGCTCGCACCCGCACCACCACGGCCCCCGTTGTGCCATATTCCC
* *
63592638 CGAGGGGGCGGCACGGTCAAGTGTCTAACTTAGAAATTTTTTCTGTTCGT
131 CGAGGGGGCGGCAAGGCCAAGTGTCTAACTTAGAAATTTTTTCTGTTCGT
* *
63592688 CCAAAACAAATACAAGAGGCCGAAT-AAAGTATGGCACGGCACGGCATGGCAGAAAATTGAACAA
1 CCAAAACAAATACAAGAAGCCGAATGAAA-TATGGCA-GG-ACGGCATGGCAGAAAATTAAACAA
* * *
63592752 GTGCTCAGACCACCAACAGTTGGGAGCTCGCACTCGCACCACCACGGCCCCCGTTGTGCCATATT
63 GTGCCCAGACCACCAACAGTTGAGAGCTCGCACCCGCACCACCACGGCCCCCGTTGTGCCATATT
*
63592817 CCCCGAGGGGGCGGCAAGGCCAAGTGTTTAACT
128 CCCCGAGGGGGCGGCAAGGCCAAGTGTCTAACT
63592850 AACTCCTTAC
Statistics
Matches: 142, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
179 3 0.02
180 30 0.21
181 1 0.01
182 108 0.76
ACGTcount: A:0.29, C:0.27, G:0.26, T:0.18
Consensus pattern (180 bp):
CCAAAACAAATACAAGAAGCCGAATGAAATATGGCAGGACGGCATGGCAGAAAATTAAACAAGTG
CCCAGACCACCAACAGTTGAGAGCTCGCACCCGCACCACCACGGCCCCCGTTGTGCCATATTCCC
CGAGGGGGCGGCAAGGCCAAGTGTCTAACTTAGAAATTTTTTCTGTTCGT
Found at i:63602165 original size:22 final size:22
Alignment explanation
Indices: 63602139--63602182 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
63602129 ATCATGTATG
63602139 TTATTTGATAATATTATGATGC
1 TTATTTGATAATATTATGATGC
63602161 TTATTTGATAATATTATGATGC
1 TTATTTGATAATATTATGATGC
63602183 ATGTGAGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.50
Consensus pattern (22 bp):
TTATTTGATAATATTATGATGC
Found at i:63603229 original size:37 final size:37
Alignment explanation
Indices: 63603178--63603253 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
63603168 ATGATCGATG
*
63603178 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
63603215 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
63603252 TT
1 TT
63603254 TGGGTTTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:63614256 original size:20 final size:21
Alignment explanation
Indices: 63614231--63614273 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
63614221 ATAAATGTGT
*
63614231 ATTTTGAA-GTTTCTTGATAG
1 ATTTTGAATGCTTCTTGATAG
*
63614251 ATTTTGAATGCTTGTTGATAG
1 ATTTTGAATGCTTCTTGATAG
63614272 AT
1 AT
63614274 ATACAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGCTTCTTGATAG
Found at i:63617658 original size:43 final size:42
Alignment explanation
Indices: 63617564--63617670 Score: 106
Period size: 43 Copynumber: 2.5 Consensus size: 42
63617554 AGACCACGTG
* * * * * *
63617564 ACCATGTCTGGGACATTGGCATCATATATGATTTCGTGTAAG
1 ACCACGTCTAGGACAGTGGCATCATATATGATTACATGTAAA
** * *
63617606 ACCTTGTCTAGGATAGTGGCATCAATATTTGATTACATGTAAA
1 ACCACGTCTAGGACAGTGGCATC-ATATATGATTACATGTAAA
*
63617649 ACCACGTCTAGGACATTGGCAT
1 ACCACGTCTAGGACAGTGGCAT
63617671 TGTATGAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
42 19 0.37
43 33 0.63
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (42 bp):
ACCACGTCTAGGACAGTGGCATCATATATGATTACATGTAAA
Found at i:63617877 original size:18 final size:19
Alignment explanation
Indices: 63617841--63617879 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
63617831 TATGACAACG
63617841 AATGATATGATTGTATATA
1 AATGATATGATTGTATATA
63617860 AATGA-ATGATGTGTTATATA
1 AATGATATGAT-TG-TATATA
63617880 TGCTCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (19 bp):
AATGATATGATTGTATATA
Found at i:63627493 original size:39 final size:40
Alignment explanation
Indices: 63627393--63627577 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
63627383 TTGAATGATG
* * *
63627393 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
63627432 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
63627473 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
63627512 TCCGTGTTAAGTCCCGAAGGCATTTGTGCGAGTCACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
63627551 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
63627578 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:63627600 original size:79 final size:79
Alignment explanation
Indices: 63627446--63627600 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
63627436 GGACTAAGAT
* * * **
63627446 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
63627511 ATCCGTGTTAAGTC
66 ATCCGTGTTAAGTC
* *
63627525 CCGAAGGCATTTGTGCGAGTCACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTCACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
63627588 TATATCCG-GTTAA
63 TAAATCCGTGTTAA
63627601 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.58
80 25 0.38
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGTGTTAAGTC
Found at i:63630220 original size:56 final size:56
Alignment explanation
Indices: 63630160--63630296 Score: 220
Period size: 56 Copynumber: 2.4 Consensus size: 56
63630150 TCCTAGACAG
*
63630160 GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* * *
63630216 GGTCTTACTCTCACAAATATATTGAAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* *
63630272 GGTCTTACTCGCACACATAAATCGA
1 GGTCTTACTCACACACATATATCGA
63630297 TGCCATGGTC
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
Found at i:63633802 original size:27 final size:27
Alignment explanation
Indices: 63633772--63633823 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
63633762 TTTGTTATGT
63633772 TTGGCACACTATATCACTTTGCCATGA
1 TTGGCACACTATATCACTTTGCCATGA
* *
63633799 TTGGTACACTTTATCACTTTGCCAT
1 TTGGCACACTATATCACTTTGCCAT
63633824 AGTTCAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.38
Consensus pattern (27 bp):
TTGGCACACTATATCACTTTGCCATGA
Found at i:63633956 original size:31 final size:32
Alignment explanation
Indices: 63633880--63634093 Score: 210
Period size: 31 Copynumber: 6.8 Consensus size: 32
63633870 TCAGATAAAT
* *
63633880 GTAGCTA-AAGCTACCACTTATCACTTG-TCACTT
1 GTAGCTAGAAGCTACCACTTTTCAC-TGATCA--G
* * *
63633913 GTAGC-CGAAGCTACCACTATTCACTGATCAA
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
* *
63633944 GTAGCTAG-AGCTACCATTTTTCACTAATCAG
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
* *
63633975 GTAGC-CGAAGCTACTACTTTTCACTGATCAG
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
* *
63634006 GTAGCCA-AAGCTACCACTTTTCACCGATCAG
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
*
63634037 GTAG-TCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
*
63634068 GTATAGC-CGAAGCTACCACTTTTCAC
1 G--TAGCTAGAAGCTACCACTTTTCAC
63634094 ATTGTACACA
Statistics
Matches: 153, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
30 1 0.01
31 104 0.68
32 3 0.02
33 45 0.29
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (32 bp):
GTAGCTAGAAGCTACCACTTTTCACTGATCAG
Done.