Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 204 of 325
Found at i:63633999 original size:62 final size:62
Alignment explanation
Indices: 63633913--63634093 Score: 245
Period size: 62 Copynumber: 2.9 Consensus size: 62
63633903 CTTGTCACTT
* * * * *
63633913 GTAGCCGAAGCTACCACTATTCACTGATCAAGTAGCTAGAGCTACCATTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCAAAGCTACCACTTTTCACCAATCAG
* * *
63633975 GTAGCCGAAGCTACTACTTTTCACTGATCAGGTAGCCAAAGCTACCACTTTTCACCGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCAAAGCTACCACTTTTCACCAATCAG
* * *
63634037 GTAGTCGAAGCTACCACTTTTCACTGATCAGGTATAGCCGAAGCTACCACTTTTCAC
1 GTAGCCGAAGCTACCACTTTTCACTGATCAAG--TAGCCAAAGCTACCACTTTTCAC
63634094 ATTGTACACA
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
62 84 0.79
64 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCAAAGCTACCACTTTTCACCAATCAG
Found at i:63634023 original size:93 final size:94
Alignment explanation
Indices: 63633887--63634093 Score: 258
Period size: 93 Copynumber: 2.2 Consensus size: 94
63633877 AATGTAGCTA
* * * *
63633887 AAGCTACCACTTATCACTTG-TCACTTGTAGCCGAAGCTACCACTATTCACTGATCAAGTAGCTA
1 AAGCTACCACTTTTCAC-TGATCA--GGTAGCCAAAGCTACCACTATTCACCGATCAAGTAG-TA
*
63633951 G-AGCTACCATTTTTCACTAATCAGG-TAGCCG
62 GAAGCTACCACTTTTCACTAATCAGGATAGCCG
* * * *
63633982 AAGCTACTACTTTTCACTGATCAGGTAGCCAAAGCTACCACTTTTCACCGATCAGGTAGTCGAAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCAAAGCTACCACTATTCACCGATCAAGTAGTAGAAG
*
63634047 CTACCACTTTTCACTGATCAGGTATAGCCG
66 CTACCACTTTTCACTAATCAGG-ATAGCCG
63634077 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
63634094 ATTGTACACA
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
92 2 0.02
93 53 0.55
94 2 0.02
95 40 0.41
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (94 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCCAAAGCTACCACTATTCACCGATCAAGTAGTAGAAG
CTACCACTTTTCACTAATCAGGATAGCCG
Found at i:63634167 original size:33 final size:33
Alignment explanation
Indices: 63634086--63634194 Score: 123
Period size: 33 Copynumber: 3.3 Consensus size: 33
63634076 GAAGCTACCA
* * * *
63634086 CTTTTCACA-TTGTACACATAAGGCGTACATTTT
1 CTTTTCA-AGTTGTACACACAAAGTGTACATTTC
*
63634119 CTTTTCAAG-TGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
* *
63634151 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
*
63634184 CTTTTCCAGTT
1 CTTTTCAAGTT
63634195 CTACCTTTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
32 27 0.42
33 37 0.58
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTGTACATTTC
Found at i:63638100 original size:34 final size:34
Alignment explanation
Indices: 63638015--63638088 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
63638005 AATGCCACGA
* * *
63638015 TTCACAACTCAGTATGGAAATACCATTCCTACGT
1 TTCACAGCTCGGTATGGAAATACCATACCTACGT
63638049 TTCACAGCTCGGTATGGAAATACCATACCTACGT
1 TTCACAGCTCGGTATGGAAATACCATACCTACGT
63638083 TTCACA
1 TTCACA
63638089 CTTTTCCATG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (34 bp):
TTCACAGCTCGGTATGGAAATACCATACCTACGT
Found at i:63639745 original size:24 final size:24
Alignment explanation
Indices: 63639718--63639817 Score: 128
Period size: 24 Copynumber: 4.2 Consensus size: 24
63639708 AGGCTGTCAC
* *
63639718 GAGAAGATTTGGGAGCTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
63639742 GAGAGGATTTAGGAGCTAATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
* * **
63639766 AAGAGGATTTAGGAGCGGATAACA
1 GAGAGGATTTAGGAGCTGATAAGG
*
63639790 GAGAGGATTTAGGAGCTGATTAGG
1 GAGAGGATTTAGGAGCTGATAAGG
63639814 GAGA
1 GAGA
63639818 ACGGTGTTGG
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.36, C:0.05, G:0.39, T:0.20
Consensus pattern (24 bp):
GAGAGGATTTAGGAGCTGATAAGG
Found at i:63642649 original size:18 final size:17
Alignment explanation
Indices: 63642609--63642649 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
63642599 CACTTTTTCA
*
63642609 ATCATCCCTCATCCTTC
1 ATCATCCCTCATCATTC
63642626 ATTCATCCCTCACTCATTC
1 A-TCATCCCTCA-TCATTC
63642645 ATCAT
1 ATCAT
63642650 TCTATCCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 14 0.67
19 6 0.29
ACGTcount: A:0.22, C:0.41, G:0.00, T:0.37
Consensus pattern (17 bp):
ATCATCCCTCATCATTC
Found at i:63651612 original size:27 final size:27
Alignment explanation
Indices: 63651582--63651776 Score: 200
Period size: 27 Copynumber: 7.3 Consensus size: 27
63651572 TACTAAAATG
*
63651582 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
63651609 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * * *
63651636 -CCTCAATTTACAAAAATACC-GTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
63651661 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
63651688 CCCTCGGTTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
63651715 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
63651742 CCCTC-AGTTTACA-AAATACCATTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
*
63651768 CCCTTGATT
1 CCCTCGATT
63651777 GGAAATTACT
Statistics
Matches: 140, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
25 3 0.02
26 51 0.36
27 86 0.61
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:63651668 original size:79 final size:80
Alignment explanation
Indices: 63651582--63651776 Score: 243
Period size: 79 Copynumber: 2.4 Consensus size: 80
63651572 TACTAAAATG
*
63651582 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCA-CCTCAATTTA
1 CCCTCGATTT-TAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTA
63651646 CAAAAATACC-GTTTA
65 CAAAAATACCAGTTTA
* * * *
63651661 CCCTCGATTTATAGAATTACCATTTTACCCTCGGTTTACAGAATTATCGTTTTACCCTCGATTTA
1 CCCTCGATTT-TAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTA
* *
63651726 CAAAATTACCATTTTA
65 CAAAAATACCAGTTTA
* * * *
63651742 CCCTC-AGTTTACAAAATACCATTTTACCCTTGATT
1 CCCTCGATTTTA-GAATTACCATTTTACCCTCGATT
63651777 GGAAATTACT
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 51 0.51
80 40 0.40
81 9 0.09
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (80 bp):
CCCTCGATTTTAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTAC
AAAAATACCAGTTTA
Found at i:63651846 original size:27 final size:26
Alignment explanation
Indices: 63651779--63651930 Score: 126
Period size: 27 Copynumber: 5.7 Consensus size: 26
63651769 CCTTGATTGG
* *
63651779 AAATTACTGAAATACCCCTGTTAGGATA
1 AAATTACCGAAATACCCCTGTT-TG-TA
* *
63651807 GAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCGAAATACCCCT-GTTTGTA
* *
63651834 AAATTACCGAAATACCACTGGTTTGTG
1 AAATTACCGAAATACCCCT-GTTTGTA
* **
63651861 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCC-CTGTTTGTA
* **
63651888 AAA-TACCAAAATACCCCTGATTTACA
1 AAATTACCGAAATACCCCTG-TTTGTA
*
63651914 AAATTACAGAAATACCC
1 AAATTACCGAAATACCC
63651931 TAAACTTTCT
Statistics
Matches: 98, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.01
26 18 0.18
27 58 0.59
28 18 0.18
29 3 0.03
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.28
Consensus pattern (26 bp):
AAATTACCGAAATACCCCTGTTTGTA
Found at i:63651926 original size:53 final size:54
Alignment explanation
Indices: 63651828--63651931 Score: 131
Period size: 53 Copynumber: 1.9 Consensus size: 54
63651818 ATACCCCTAG
* * ***
63651828 TTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTATCGAAATACCCTCAA
*
63651882 TTTGTAAAA-TACCAAAATACCCCTGATTTACAAAATTA-CAGAAATACCCT
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTATC-GAAATACCCT
63651932 AAACTTTCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
52 1 0.02
53 33 0.77
54 9 0.21
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTATCGAAATACCCTCAA
Found at i:63652059 original size:27 final size:27
Alignment explanation
Indices: 63652007--63652084 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 27
63651997 AAATGACTAA
*
63652007 AATACCCCTAATA-GGTAAAAAT-ACCGT
1 AATACCCCT-GTAGGGT-AAAATGACCGT
*
63652034 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
* *
63652061 AATACCCTTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
63652085 GAATATACCC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
26 7 0.17
27 34 0.81
28 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:63654306 original size:47 final size:47
Alignment explanation
Indices: 63654185--63654819 Score: 835
Period size: 47 Copynumber: 13.6 Consensus size: 47
63654175 CCCTTCGGGA
* * * * *
63654185 CTTATCACATTTATACAT-TCCACATCCATCACATTGGCCATTCGGT
1 CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
* *
63654231 C-TATCACATATATTACACT-TTCA-ATTCATCACATTGGCCATTTGGC
1 CTTATCACATATA-CACA-TGTTCACATTCATCACATTGGCCATTCGGC
* **
63654277 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
63654324 CTTATCACACATACACATATTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
63654371 CTTATCTCACATACATATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
*
63654418 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
*
63654465 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
63654514 CTTATCACACATACACATGTTCACATTCATCACATCGGTCATTCGGC
1 CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
*
63654561 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
**
63654608 CTTAT--CATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
* *
63654653 CTTATCACACATACACATGTTCACATTCATCACATTGTCCATTCGGC
1 CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
63654700 CTTATCACATATATATACACT-TTCACATTCATCAC-TCGGCCATTAGGC
1 CTTATCAC--ATATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
63654748 CTTATCACATATACACACT-TTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
63654795 CTTATCACATATACAC-T-TTCACATT
1 CTTATCACATATACACATGTTCACATT
63654820 TATTCAAATA
Statistics
Matches: 532, Mismatches: 42, Indels: 31
0.88 0.07 0.05
Matches are distributed among these distances:
45 62 0.12
46 58 0.11
47 328 0.62
48 18 0.03
49 64 0.12
50 2 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATACACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:63654659 original size:22 final size:22
Alignment explanation
Indices: 63654589--63654661 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
63654579 GTTCACATTC
63654589 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
63654611 ATCATATAT-G-CATGTTC-ACATT
1 ATCACAT-TGGCCA--TTCGGCCTT
63654633 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
63654656 ATCACA
1 ATCACA
63654662 CATACACATG
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
21 2 0.05
22 20 0.53
23 14 0.37
24 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:63656205 original size:85 final size:85
Alignment explanation
Indices: 63656076--63656254 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
63656066 TATTTTATTG
*
63656076 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
63656141 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63656161 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
63656226 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63656246 CCCATGCTC
1 CCCATGCTC
63656255 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:63657554 original size:40 final size:40
Alignment explanation
Indices: 63657509--63657866 Score: 562
Period size: 40 Copynumber: 9.1 Consensus size: 40
63657499 CGAATACACG
* * * *
63657509 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
63657549 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
63657589 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63657629 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63657668 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
63657708 TCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63657747 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63657787 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63657826 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63657865 TC
1 TC
63657867 GTCGAGACCT
Statistics
Matches: 297, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 119 0.40
40 178 0.60
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:63657690 original size:79 final size:79
Alignment explanation
Indices: 63657509--63657866 Score: 574
Period size: 79 Copynumber: 4.5 Consensus size: 79
63657499 CGAATACACG
* * * * * * *
63657509 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGA
* * *
63657574 TTTAGCACGGATATA
65 CTTAGCCCGGATACA
* * *
63657589 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
63657654 TTAGCCCGGATACA
66 TTAGCCCGGATACA
63657668 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
63657733 TTAGCCCGGATACA
66 TTAGCCCGGATACA
*
63657747 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
63657812 TTAGCCCGGATACA
66 TTAGCCCGGATACA
63657826 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATC
63657867 GTCGAGACCT
Statistics
Matches: 261, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
78 4 0.02
79 205 0.79
80 52 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
TTAGCCCGGATACA
Found at i:63657989 original size:38 final size:38
Alignment explanation
Indices: 63657920--63657994 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
63657910 GAATTTTAAT
*
63657920 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
63657958 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
63657995 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:63660475 original size:22 final size:22
Alignment explanation
Indices: 63660447--63660568 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
63660437 TTCCACATCC
63660447 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
63660469 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
63660493 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
63660516 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
63660540 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
63660563 ATCACA
1 ATCACA
63660569 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:63660482 original size:47 final size:47
Alignment explanation
Indices: 63660419--63661445 Score: 1480
Period size: 47 Copynumber: 21.6 Consensus size: 47
63660409 CCCTTCGGGA
* * *
63660419 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
63660466 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
63660513 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
63660560 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
63660607 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
63660654 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
63660701 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
63660748 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
63660797 CTTATCACACATACACATGTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATG-TTCACATTCATCACATTGGCCATTCGGC
* *
63660845 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
63660892 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
63660941 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
63660988 CTTATCTCATATATGCATGTTCACATTCTTCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
63661035 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
63661082 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
63661131 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
63661180 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
63661227 CTTATCACACATACACATGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
63661274 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
63661323 CTTATCACATATATACACT-TTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
63661370 CTTATCACATATATACACACT-TTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATAT--ACA-TGTTCACATTCATCACATTGGCCATTCGGC
63661419 CTTATCACATATATACACT-TTCACATT
1 CTTATCACATATATACA-TGTTCACATT
63661446 TATTCAAATA
Statistics
Matches: 913, Mismatches: 48, Indels: 38
0.91 0.05 0.04
Matches are distributed among these distances:
46 4 0.00
47 593 0.65
48 47 0.05
49 265 0.29
50 4 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:63660583 original size:94 final size:94
Alignment explanation
Indices: 63660419--63661445 Score: 1480
Period size: 96 Copynumber: 10.8 Consensus size: 94
63660409 CCCTTCGGGA
* * *
63660419 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
63660483 CT-TTCACATTCATCACATTGGCCATTCGGC
65 -TGTTCACATTCATCACATTGGCCATTCGGC
* * * *
63660513 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT
63660578 GTTCACATTCATCACATTGGCCATTCGGC
66 GTTCACATTCATCACATTGGCCATTCGGC
* * * *
63660607 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCAT
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT
63660672 GTTCACATTCATCACATTGGCCATTCGGC
66 GTTCACATTCATCACATTGGCCATTCGGC
* *
63660701 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
63660766 ACT-TTCACATTCATCACATTGGCCATTCGGC
64 A-TGTTCACATTCATCACATTGGCCATTCGGC
* * * *
63660797 CTTATCACACATACACATGTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
1 CTTATCACATATATACATG-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
63660862 TGTTCACATTCATCACATTGGCCATTCGGC
65 TGTTCACATTCATCACATTGGCCATTCGGC
* *
63660892 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
63660956 CATGTTCACATTCATCACATTGGCCATTCGGC
63 CATGTTCACATTCATCACATTGGCCATTCGGC
* * * * *
63660988 CTTATCTCATATATGCATGTTCACATTCTTCACATTGGCCATTCGGCCTTATCACACATACACAT
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT
63661053 GTTCACATTCATCACATTGGCCATTCGGC
66 GTTCACATTCATCACATTGGCCATTCGGC
63661082 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATA
63661146 TACACT-TTCACATTCATCACATTGGCCATTCGGC
61 TACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * * *
63661180 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT
*
63661245 GTTCACATTCATCACATTGGTCATTCGGC
66 GTTCACATTCATCACATTGGCCATTCGGC
63661274 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
* * *
63661338 CACT-TTCACATTCATCACATCGGCTATTAGGC
63 CA-TGTTCACATTCATCACATTGGCCATTCGGC
*
63661370 CTTATCACATATATACACACT-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 CTTATCACATATAT--ACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
63661434 CACT-TTCACATT
63 CA-TGTTCACATT
63661446 TATTCAAATA
Statistics
Matches: 865, Mismatches: 43, Indels: 48
0.90 0.04 0.05
Matches are distributed among these distances:
93 4 0.00
94 361 0.42
95 44 0.05
96 364 0.42
97 47 0.05
98 44 0.05
99 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT
GTTCACATTCATCACATTGGCCATTCGGC
Found at i:63662836 original size:85 final size:85
Alignment explanation
Indices: 63662707--63662885 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
63662697 TATTTTATTG
*
63662707 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
63662772 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63662792 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
63662857 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63662877 CCCATGCTC
1 CCCATGCTC
63662886 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:63663758 original size:25 final size:24
Alignment explanation
Indices: 63663720--63663789 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
63663710 AGGAAGTGCT
*
63663720 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
63663744 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
63663769 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
63663790 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:63663802 original size:24 final size:24
Alignment explanation
Indices: 63663719--63663802 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
63663709 GAGGAAGTGC
* *
63663719 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
63663744 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
63663768 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
63663792 TAAAAGAGGCT
1 TAAAAG-GGCT
63663803 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:63663996 original size:42 final size:42
Alignment explanation
Indices: 63663937--63664028 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
63663927 TAGTCTCCCC
*
63663937 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
63663979 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
63664021 AAATGGGC
1 AAATGGGC
63664029 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:63664090 original size:31 final size:31
Alignment explanation
Indices: 63664052--63664205 Score: 265
Period size: 31 Copynumber: 5.0 Consensus size: 31
63664042 CGTTTACAGT
*
63664052 AAAGGCTTCGCCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
**
63664083 AAAGGCTTTAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
63664114 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
63664145 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
63664176 AAAGGCTTCGACCCAGTGATATGA-TTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
63664206 TTTATGGAAA
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 6 0.05
31 111 0.95
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:63667351 original size:22 final size:25
Alignment explanation
Indices: 63667307--63667353 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
63667297 TAATAAAATA
63667307 TAAAACTATATTTAATAATTAATTT
1 TAAAACTATATTTAATAATTAATTT
*
63667332 TAAAA-TAT-TTTATTAA-TAATTT
1 TAAAACTATATTTAATAATTAATTT
63667354 GGGTTTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 7 0.33
24 3 0.14
25 5 0.24
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TAAAACTATATTTAATAATTAATTT
Found at i:63668085 original size:18 final size:21
Alignment explanation
Indices: 63668044--63668082 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
63668034 AACATCCCTA
63668044 GCTTATTTGTGTTAAATTTTT
1 GCTTATTTGTGTTAAATTTTT
63668065 GCTTA-TTGTGTT-AATTTT
1 GCTTATTTGTGTTAAATTTT
63668083 GCTAAAGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 7 0.39
21 5 0.28
ACGTcount: A:0.18, C:0.05, G:0.15, T:0.62
Consensus pattern (21 bp):
GCTTATTTGTGTTAAATTTTT
Found at i:63680503 original size:11 final size:10
Alignment explanation
Indices: 63680480--63680525 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
63680470 ATAACATATG
*
63680480 CATATCAT-A
1 CATATCATGT
63680489 CATATCATGT
1 CATATCATGT
63680499 GCATATCATGT
1 -CATATCATGT
*
63680510 CAAATCATGT
1 CATATCATGT
63680520 -ATATCA
1 CATATCA
63680526 AAATCTCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 13 0.41
10 9 0.28
11 10 0.31
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.35
Consensus pattern (10 bp):
CATATCATGT
Found at i:63681627 original size:21 final size:21
Alignment explanation
Indices: 63681601--63681645 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
63681591 TTTCGGCAGA
63681601 AGTAGAGGTAA-GGAAGGAAGT
1 AGTAGAGG-AACGGAAGGAAGT
* *
63681622 AGTAGATGAACGGAAGGGAGT
1 AGTAGAGGAACGGAAGGAAGT
63681643 AGT
1 AGT
63681646 GGGCTGGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.40, C:0.02, G:0.42, T:0.16
Consensus pattern (21 bp):
AGTAGAGGAACGGAAGGAAGT
Found at i:63684314 original size:20 final size:20
Alignment explanation
Indices: 63684289--63684335 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
63684279 GTTTTGATAT
63684289 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
63684309 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63684329 ACATGAT
1 ACATGAT
63684336 GTATTCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63684413 original size:23 final size:24
Alignment explanation
Indices: 63684383--63684463 Score: 103
Period size: 23 Copynumber: 3.4 Consensus size: 24
63684373 AGGAAGTGCA
*
63684383 AAAAGGGCTTTTGCCCCA-ATATT
1 AAAAGGGCTTTTGCCCCAGTTATT
*
63684406 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAG-TTATT
*
63684431 AAAAGGGC-TTTGCCCTAGTTATT
1 AAAAGGGCTTTTGCCCCAGTTATT
63684454 AAAAGAGGCT
1 AAAAG-GGCT
63684464 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
23 27 0.54
24 12 0.24
25 11 0.22
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTTTGCCCCAGTTATT
Found at i:63684707 original size:31 final size:31
Alignment explanation
Indices: 63684671--63684757 Score: 102
Period size: 38 Copynumber: 2.6 Consensus size: 31
63684661 CATTTACAGT
*
63684671 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63684702 AAAGGCTTCGGCCCAGTGTTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G---T--AATATGAAATATGA
63684740 AAAGGCTTCGGCCCAGTA
1 AAAGGCTTCGGCCCAGTA
63684758 CATGCTGAGT
Statistics
Matches: 48, Mismatches: 1, Indels: 14
0.76 0.02 0.22
Matches are distributed among these distances:
31 15 0.31
33 2 0.04
36 2 0.04
38 29 0.60
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63691871 original size:40 final size:40
Alignment explanation
Indices: 63691762--63691962 Score: 232
Period size: 40 Copynumber: 5.0 Consensus size: 40
63691752 GATGATAACT
* * *
63691762 GGGCTAAGTCCCAAAGGCA-TCTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTC-GTGCGAGTTACTATA-TCC
* * *
63691802 GGGCTAAG-CTCGAAGGCAATT-GTGTGAGTTATTATATCC
1 GGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATATCC
63691841 GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCC
* * *
63691881 AGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCC
* *
63691921 GGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATATCC
63691961 GG
1 GG
63691963 TTGAATTTCG
Statistics
Matches: 138, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
39 32 0.23
40 105 0.76
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCC
Found at i:63696381 original size:79 final size:81
Alignment explanation
Indices: 63696272--63696454 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
63696262 TACTCGTTCA
* *
63696272 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
63696335 ATTTAGTAAC-TCGCAGC
65 ATATAGTAACTTAGCA-C
* **
63696352 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
63696415 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
63696431 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
63696455 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:63696387 original size:39 final size:40
Alignment explanation
Indices: 63696270--63696454 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
63696260 GCTACTCGTT
*
63696270 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
63696310 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
63696350 GC-AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
63696389 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
63696430 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63696455 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 3 0.02
39 31 0.25
40 77 0.62
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:63699911 original size:46 final size:46
Alignment explanation
Indices: 63699808--63700026 Score: 207
Period size: 46 Copynumber: 4.7 Consensus size: 46
63699798 GGTAAGGTGT
* *
63699808 CGATGCCATGTCCCAGACATGGTCTTACACTGACCAT-CATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTTACATCTCG-AGGC
*
63699856 CGATG-ATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGC
* * * *
63699901 TGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTC-AGTGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-TTACATCTCGAG-GC
* * * *
63699947 CGGTGCCATGTCCCAGACATGGTCTTACACTAGCTTCCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACAT-CTCGAGGC
*
63699995 CGATGCATGTCCCAGAAATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
63700027 ACATACAAGT
Statistics
Matches: 144, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
44 3 0.02
45 25 0.17
46 60 0.42
47 29 0.20
48 25 0.17
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGC
Found at i:63700000 original size:94 final size:91
Alignment explanation
Indices: 63699808--63700028 Score: 259
Period size: 94 Copynumber: 2.4 Consensus size: 91
63699798 GGTAAGGTGT
*
63699808 CGATGCCATGTCCCAGACATGGTCTTACACTGACCA-TCATCTCGTAGCCGATGATGTCCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACT-AGCACTCATCTCGTAGCCGATGATGTCCCAGAC
* *
63699872 ATGTCTTACACTGGCTTACATCTCGAGGC
63 ATGTCTTACACTAGCTTACATATCGAGGC
* * * *
63699901 TGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAGT-GTCGGTGCCATGTCCCAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTC-GTAGCCGATG--ATGTCCCAGAC
* *
63699965 ATGGTCTTACACTAGCTTCCATAAT-GTGGC
63 AT-GTCTTACACTAGCTTACAT-ATCGAGGC
*
63699995 CGATGCATGTCCCAGAAATGTCTTACACTAGCAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCAC
63700029 ATACAAGTGA
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
90 3 0.03
91 21 0.19
92 16 0.14
93 17 0.15
94 53 0.48
95 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (91 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGTAGCCGATGATGTCCCAGACATG
TCTTACACTAGCTTACATATCGAGGC
Found at i:63700498 original size:17 final size:17
Alignment explanation
Indices: 63700476--63700510 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
63700466 TTTATCCCTT
63700476 AGTTCACAACTTATGCA
1 AGTTCACAACTTATGCA
63700493 AGTTCACAACTTATGCA
1 AGTTCACAACTTATGCA
63700510 A
1 A
63700511 AAATAGTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (17 bp):
AGTTCACAACTTATGCA
Found at i:63700722 original size:12 final size:12
Alignment explanation
Indices: 63700705--63700729 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63700695 CAAAAATGTA
63700705 AAAATCATCAAG
1 AAAATCATCAAG
63700717 AAAATCATCAAG
1 AAAATCATCAAG
63700729 A
1 A
63700730 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:63704420 original size:30 final size:31
Alignment explanation
Indices: 63704362--63704425 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
63704352 ACTTAACAAG
63704362 CAAATGCTTCTAAAATAATAATAAAAATTAA
1 CAAATGCTTCTAAAATAATAATAAAAATTAA
63704393 CAAATGCCTT-TAAAATAATAA-AAAAATTAA
1 CAAATG-CTTCTAAAATAATAATAAAAATTAA
63704423 CAA
1 CAA
63704426 TAAATAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 12 0.38
31 17 0.53
32 3 0.09
ACGTcount: A:0.59, C:0.11, G:0.03, T:0.27
Consensus pattern (31 bp):
CAAATGCTTCTAAAATAATAATAAAAATTAA
Found at i:63711550 original size:43 final size:42
Alignment explanation
Indices: 63711532--63712351 Score: 691
Period size: 43 Copynumber: 19.3 Consensus size: 42
63711522 GGCAGCAAGG
*
63711532 TGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGT
* *
63711575 TACCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGT
*** * * *
63711618 TGCCGATGGTTTTCGAGGCTCCCGTAC-ATCCA-AGCACGAAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGC-C-TAGGT
*
63711661 TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-GGGCCTAGGT
* *
63711704 TGCCGATCGTGCCCGACGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-GGGCCTAGGT
63711747 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-GGGCCTAGGT
* * *
63711790 TGCCGATGGTG-CCGAAGCTCTCGCACGACCAGGGGCCTAGCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-GGGCCTAGGT
* * * * *
63711832 TGCCGATGGTG-CTGAGACTTCTGCACGACCAAGTGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGT
* * * *
63711874 TGCCGATGGT-TCTGAGACTCCCGCACGACCAAGTGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGT
* * *
63711916 TGCCGATGGTGTCCGAGGCTTCCTCAC-ATCCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CC-AGGGCCTAGGT
* * * * * *
63711959 TGCTGATGGTGTCCGAGGCTCCCGTAC-ATCTAAGCGCCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-C-CAGGGCCTAGGT
* * * * *
63712001 TACCGATGGTGTCTGAGGCTCCTGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGT
* *
63712044 TGCCG-TGGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGT
1 TGCCGAT-GGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGT
* ** *
63712087 TGCGGATGGT-TTCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGT
* * *
63712129 TACCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCTTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGT
* * *
63712172 TGCCGATGGTGCCTGAGGCTCCCGTACGACCAAGGTCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGT
* * * ** *
63712215 TGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CC-AGGGCCTAGGT
* * ** *
63712256 TGCCAATGGTGCCCAAGGCTCCCGCAC-ATCCGAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CC-AGGGCCTAGGT
* * * * *
63712298 TGCTGATGGT-CACCGAGGCTCCTGCACAACCAAGAGCCTAGTT
1 TGCCGATGGTGC-CCGAGGCTCCCGCACGACC-AGGGCCTAGGT
63712341 TGCCGATGGTG
1 TGCCGATGGTG
63712352 TCCAAGGTGT
Statistics
Matches: 658, Mismatches: 96, Indels: 45
0.82 0.12 0.06
Matches are distributed among these distances:
41 15 0.02
42 258 0.39
43 380 0.58
44 3 0.00
45 2 0.00
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (42 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGCCTAGGT
Found at i:63712043 original size:128 final size:127
Alignment explanation
Indices: 63711532--63712240 Score: 761
Period size: 128 Copynumber: 5.5 Consensus size: 127
63711522 GGCAGCAAGG
* * *
63711532 TGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTG-CCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
* * ** **
63711597 CACACGACCAAGGGCCTAGGTTGCCGATGGT-TTTCGAGGCTCCCGTAC-ATCCAAGCACGAAGG
64 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCT-GAGGCTCCCGTACGA-CCAAGGGCCTAGG
63711660 T
127 T
* * * * *
63711661 TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATCGTGCCCGACGCTCC
1 TGCCGATGGTG-CCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
* * * * *
63711726 CGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
64 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTCCCGTACGACCAAGGGCCTAGGT
* * * * * * * * *
63711790 TGCCGATGGTGCCGAAGCTCTCGCACGACCAGGGGCCTAGCTTGCCGATGGTGCTGAGACTTCTG
1 TGCCGATGGTGCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCG
* * * *
63711855 CACGACCAAGTGCCTAGGTTGCCGATGGT-TCTGAGACTCCCGCACGACCAAGTGCCTAGGT
66 CACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTCCCGTACGACCAAGGGCCTAGGT
* *
63711916 TGCCGATGGTGTCCGAGGCTTCCTCAC-ATCCAAGGGCCTAGGTTGCTGATGGTGTCCGAGGCTC
1 TGCCGATGGTG-CCGAGGCTCCCTCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTC
* * * * * *
63711980 CCGTAC-ATCTAAGCGCCAAGG-TACCGATGGTGTCTGAGGCTCCTGTACGACCAAGGGCCTAGG
63 CCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTCCCGTACGACCAAGGGCCTAGG
63712043 T
127 T
* **
63712044 TGCCG-TGGGTGTCCGAGGCTCCCGT-ACGACCAAGGGCCTAGGTTGCGGATGGTTTCGAGGCTC
1 TGCCGAT-GGTG-CCGAGGCTCCC-TCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTC
* * * * *
63712107 TCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCTTAGGT
63 CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTCCCGTACGACCAAGGGCCTAGGT
* * *
63712172 TGCCGATGGTGCCTGAGGCTCCCGT-ACGACCAAGGTCCTAGGTTGCCAATGGTGCCGAGGCTCT
1 TGCCGATGGTGCC-GAGGCTCCC-TCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCC
63712236 CGCAC
64 CGCAC
63712241 ATCCTTGCAC
Statistics
Matches: 494, Mismatches: 72, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
126 39 0.08
127 102 0.21
128 230 0.47
129 122 0.25
130 1 0.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (127 bp):
TGCCGATGGTGCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCG
CACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTCCCGTACGACCAAGGGCCTAGGT
Found at i:63712307 original size:42 final size:42
Alignment explanation
Indices: 63712215--63712325 Score: 136
Period size: 42 Copynumber: 2.7 Consensus size: 42
63712205 GGTCCTAGGT
* **
63712215 TGCCAATGGTG-CCGAGGCTCTCGCACATCCTTGCACCAAGG
1 TGCCAATGGTGCCCGAGGCTCCCGCACATCCGAGCACCAAGG
*
63712256 TGCCAATGGTGCCCAAGGCTCCCGCACATCCGAGCACCAAGG
1 TGCCAATGGTGCCCGAGGCTCCCGCACATCCGAGCACCAAGG
** *
63712298 TGCTGATGGT-CACCGAGGCTCCTGCACA
1 TGCCAATGGTGC-CCGAGGCTCCCGCACA
63712326 ACCAAGAGCC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 12 0.20
42 48 0.80
ACGTcount: A:0.21, C:0.35, G:0.27, T:0.17
Consensus pattern (42 bp):
TGCCAATGGTGCCCGAGGCTCCCGCACATCCGAGCACCAAGG
Found at i:63712691 original size:24 final size:25
Alignment explanation
Indices: 63712656--63712734 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 25
63712646 TTTATATATT
* * *
63712656 CCGGG-ATGGCTCACCGGAGCACCA
1 CCGGGAATAGCTCGCCGGAGCACCG
*
63712680 CCGGGAA-AGCTCGCCCGAGCACCG
1 CCGGGAATAGCTCGCCGGAGCACCG
* *
63712704 CC-GGAATGGATCGCCGGAGCACCG
1 CCGGGAATAGCTCGCCGGAGCACCG
63712728 CCGGGAA
1 CCGGGAA
63712735 CCTAACCGGT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
23 4 0.09
24 36 0.80
25 5 0.11
ACGTcount: A:0.22, C:0.37, G:0.35, T:0.06
Consensus pattern (25 bp):
CCGGGAATAGCTCGCCGGAGCACCG
Found at i:63719350 original size:85 final size:86
Alignment explanation
Indices: 63719190--63719366 Score: 202
Period size: 85 Copynumber: 2.1 Consensus size: 86
63719180 TTTTCTTTAG
* * * *
63719190 CCCGCACATCCGAGGCACCAAGGTGCTCCTGCTGCTCGAGGCATCCGCACATCCAACGTCCTAGG
1 CCCGCACATCCGAAGCACCAAGGTGCTCATGCTGCTCGAGGCATCCGCACATCCAACGGCCAAGG
* *
63719255 TTGCCTATGGTGTCCGAGGCT
66 TTGCCGATGGTGCCCGAGGCT
* * *
63719276 CTCGCACATCC-AAGCACCAATGTGC-CAATGCTGCTCGAGGC-TCCCGCACATCCGA-GGCAGC
1 CCCGCACATCCGAAGCACCAAGGTGCTC-ATGCTGCTCGAGGCAT-CCGCACATCCAACGGC--C
63719337 AAGG-TGCCGATGGTGCCCGAGGCT
62 AAGGTTGCCGATGGTGCCCGAGGCT
63719361 CCCGCA
1 CCCGCA
63719367 TGACCAAGGG
Statistics
Matches: 77, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
84 4 0.05
85 59 0.77
86 14 0.18
ACGTcount: A:0.19, C:0.37, G:0.27, T:0.17
Consensus pattern (86 bp):
CCCGCACATCCGAAGCACCAAGGTGCTCATGCTGCTCGAGGCATCCGCACATCCAACGGCCAAGG
TTGCCGATGGTGCCCGAGGCT
Found at i:63719359 original size:43 final size:42
Alignment explanation
Indices: 63719190--63719366 Score: 153
Period size: 43 Copynumber: 4.1 Consensus size: 42
63719180 TTTTCTTTAG
* *
63719190 CCCGCACATCCGAGGCACCAAGGTGCTCCTGCTGCTCGAGGCAT
1 CCCGCACATCCGAGGCACCAAGGTGC-CATGCTGCCCGAGGC-T
* * * * * *
63719234 -CCGCACATCCAACG-TCCTAGGTTGCCTATGGTGTCCGAGGCT
1 CCCGCACATCCGAGGCACCAAGG-TGCC-ATGCTGCCCGAGGCT
* * * *
63719276 CTCGCACATCC-AAGCACCAATGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCGAGGCACCAAGGTGCC-ATGCTGCCCGAGGCT
* *
63719318 CCCGCACATCCGAGGCAGCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCGAGGCACCAAGGTGCC-ATGCTGCCCGAGGCT
63719361 CCCGCA
1 CCCGCA
63719367 TGACCAAGGG
Statistics
Matches: 104, Mismatches: 24, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
42 35 0.34
43 69 0.66
ACGTcount: A:0.19, C:0.37, G:0.27, T:0.17
Consensus pattern (42 bp):
CCCGCACATCCGAGGCACCAAGGTGCCATGCTGCCCGAGGCT
Found at i:63719388 original size:43 final size:43
Alignment explanation
Indices: 63719343--63719573 Score: 288
Period size: 43 Copynumber: 5.4 Consensus size: 43
63719333 CAGCAAGGTG
* *
63719343 CCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
63719386 CCG-TGGGTGTCCGAGGCTCCCGAACGACCAAGGGCCTAGGTTA
1 CCGAT-GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * *
63719429 CAGATGGTG-CCGAGGCTCTCACACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * *
63719471 CCGATGGTGCCCGAGGCTCTCGTACGACCAAAGTCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * *
63719514 CCGATGGTGCCCGAGGCTCCCGTACGACCAAAGTCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
*
63719557 CCAATGGTG-CCGAGGCT
1 CCGATGGTGCCCGAGGCT
63719574 TTCGCACATC
Statistics
Matches: 168, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
42 47 0.28
43 120 0.71
44 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (43 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
Found at i:63719443 original size:85 final size:86
Alignment explanation
Indices: 63719345--63719573 Score: 293
Period size: 85 Copynumber: 2.7 Consensus size: 86
63719335 GCAAGGTGCC
* * *
63719345 GATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCG-TGGGTGTCCGAGGCTCCCGA
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGAT-GGTGCCCGAGGCTCCCGA
*
63719409 ACGACCAAGGGCCTAGGTTACA
65 ACGACCAAAGGCCTAGGTTACA
* * * *
63719431 GATGGTG-CCGAGGCTCTCACACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGTA
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGAA
* * *
63719495 CGACCAAAGTCCTAGGTTGCC
66 CGACCAAAGGCCTAGGTTACA
* * * *
63719516 GATGGTGCCCGAGGCTCCCGTACGACCAAAGTCCTAGGTTACCAATGGTG-CCGAGGCT
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCT
63719574 TTCGCACATC
Statistics
Matches: 124, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
85 80 0.65
86 44 0.35
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (86 bp):
GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGAA
CGACCAAAGGCCTAGGTTACA
Found at i:63719443 original size:128 final size:127
Alignment explanation
Indices: 63719300--63719619 Score: 362
Period size: 128 Copynumber: 2.5 Consensus size: 127
63719290 CACCAATGTG
* *
63719300 CCAATGCTGCTCGAGGCTCCCGCACATCCGAGGCAGCAAGGTGCCGATGGTGCCCGAGGCTCCCG
1 CCAATGGTGC-CGAGGCTCTCGCACATCC-AGGCAGCAAGGTGCCGATGGTGCCCGAGGCTCCCG
* * * *
63719365 CATGACCAAGGGCCTAGGTTGCCG-TGGGTGTCCGAGGCTCCCGAACGACCAAGGGCCTAGGTTA
64 CACGACCAAAGGCCTAGGTTGCCGAT-GGTGCCCGAGGCTCCCGAACGACCAAAGGCCTAGGTTA
* * *
63719429 -CAGATGGTGCCGAGGCTCTCACACGA-CCAAGG--GCCTAGGTTACCGATGGTGCCCGAGGCTC
1 CCA-ATGGTGCCGAGGCTCTCGCAC-ATCC-AGGCAG-CAAGG-TGCCGATGGTGCCCGAGGCTC
* * * * *
63719490 TCGTACGACCAAAGTCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAAGTCCTAGGT
61 CCGCACGACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGAACGACCAAAGGCCTAGGT
63719555 TA
126 TA
* ** * *
63719557 CCAATGGTGCCGAGGCTTTCGCACATCCTTGCACCAAGGTGCCGATGGTGCCCAAGGCTCCCG
1 CCAATGGTGCCGAGGCTCTCGCACATCCAGGCAGCAAGGTGCCGATGGTGCCCGAGGCTCCCG
63719620 TACATCCGAG
Statistics
Matches: 158, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
126 1 0.01
127 27 0.17
128 120 0.76
129 10 0.06
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.17
Consensus pattern (127 bp):
CCAATGGTGCCGAGGCTCTCGCACATCCAGGCAGCAAGGTGCCGATGGTGCCCGAGGCTCCCGCA
CGACCAAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGAACGACCAAAGGCCTAGGTTA
Found at i:63720047 original size:24 final size:25
Alignment explanation
Indices: 63720004--63720074 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 25
63719994 TTCTGGGATG
* * *
63720004 GCTCACCGGAGCATCACCGGGAA-A
1 GCTCGCCGGAGCACCGCCGGGAATA
*
63720028 GCTCGCCGGAGCACCGCC-GGAATG
1 GCTCGCCGGAGCACCGCCGGGAATA
*
63720052 GATCGCCGGAGCACCGCCGGGAA
1 GCTCGCCGGAGCACCGCCGGGAA
63720075 CCTAACCGGC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
23 4 0.10
24 32 0.80
25 4 0.10
ACGTcount: A:0.23, C:0.35, G:0.35, T:0.07
Consensus pattern (25 bp):
GCTCGCCGGAGCACCGCCGGGAATA
Found at i:63733411 original size:170 final size:171
Alignment explanation
Indices: 63733108--63734025 Score: 940
Period size: 170 Copynumber: 5.4 Consensus size: 171
63733098 CATCCAACAT
* ** * * *
63733108 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTG-CT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTC-
* * * * *
63733170 CGAGGCTCCCGCAC-ATCC-GAGGCAGCAAGG-TGCCGATGGTGCCCAAGTCTCCCGCATGACCA
64 CGAGGCTCCCGCACGA-CCAGGGGC--CTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCA
*
63733232 AGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
125 AGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
63733279 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
* * *
63733344 AGGCT-CCGCACGACCAGGGGCCTAGG-TGCCGATGGTGCCCGAGGATCCCGCACAACCAGGGGC
66 AGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGC
* *
63733407 CTAGGTTACCGATGGTGCCCGACGCTCCCGCACGACCAGGGG
130 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63733449 CCTAGGTTGCTGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTG-CCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
* ** * * *
63733513 AGGCTCTCC-TATAACCAGGGGCCTAGGTTGCCGATGGTGCCGAGACTCCCGTACGACCAAGTGC
66 AGGCTC-CCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGC
* *
63733577 CTAGGTTACCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGG
130 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
63733619 CCTAGGTTGCCGATGGTGTTCGAGGCTCCCGTAC-ATCTAAGCGCCAAGG-TGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCC
* * * *
63733682 GAGGCTCCCGTACGACCAAGGGCCTAGGTTGCTG-TGGGTGTCCGAGGCTCCCGTACGACCAAGG
65 GAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGAT-GGTG-CCGAGGCTCCCGCACGACCAAGG
* *
63733746 GCCTAGGTTACGGATGGTG-CCGAGGCTCTCGCACGACCAAGGG
128 GCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** *
63733789 CCTAGGTTGCCGATGGTG-CCTGAGGCTCCCGTATGACCAAGGGCCTAGGTTATCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCC
* * * * * ** **
63733853 GAGGCTCCCGTACGACCAAGGTCCTAGGTTGCCAATGGTGCCGAGGCTCTCGCAC-ATCCTTGCA
65 GAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGA-CCAAGGG
* * * * **
63733917 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCGAGCA
129 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * ** * * * *
63733959 CCAAAG-TGCTGATGGTCACCGAGGCTCCTGCACAACCAAGAGCCTAGTTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
63734023 AGG
66 AGG
63734026 TGTCCGAGGC
Statistics
Matches: 636, Mismatches: 88, Indels: 48
0.82 0.11 0.06
Matches are distributed among these distances:
169 83 0.13
170 379 0.60
171 150 0.24
172 23 0.04
173 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (171 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
AGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCC
TAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:63733476 original size:213 final size:214
Alignment explanation
Indices: 63733108--63733901 Score: 946
Period size: 213 Copynumber: 3.7 Consensus size: 214
63733098 CATCCAACAT
* ** * * * *
63733108 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTC
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * * *
63733171 GAGGCTCCCGCACATCCGA-GGCAGCAAGG-TGCCGATGGTGCCCAAGTCTCCCGCATGACCAAG
64 GAGGCTCCCGCACAACCAAGGGC--CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAG
*
63733234 GGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTC
127 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTC
*
63733299 CGAGGCTCCCGCACGACCAGGGG
192 CGAGGCTCCCGTACGACCAGGGG
*
63733322 CCTAGGTTGCCGATGGTGTCCGAGGCT-CCGCACGACCAGGGGCCTAGG-TGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
63733385 AGGATCCCGCACAACCAGGGGCCTAGGTTACCGATGGTGCCCGACGCTCCCGCACGACCAGGGGC
65 AGGCTCCCGCACAACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
63733450 CTAGGTTGCTGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTG-CCGA
130 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGA
**
63733514 GGCTCTCC-TATAACCAGGGG
195 GGCTC-CCGTACGACCAGGGG
* * * * *
63733534 CCTAGGTTGCCGATGGTGCCGAGACTCCCGTACGACCAAGTGCCTAGGTTACCGATGGTGTCCGA
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * * ** * * *
63733599 GGCTTCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGTTCGAGGCTCCCGTAC-ATCTAAGCGC
66 GGCTCCCGCACAACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* * *
63733663 CAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCTG-TGGGTGTCCG
130 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGAT-GGTGTCCG
*
63733726 AGGCTCCCGTACGACCAAGGG
194 AGGCTCCCGTACGACCAGGGG
* * * *
63733747 CCTAGGTTACGGATGGTGCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGA
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* ** * * *
63733812 GGCTCCCGTATGACCAAGGGCCTAGGTTATCGATGGTGCCCGAGGCTCCCGTACGACCAAGGTCC
66 GGCTCCCGCACAACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
*
63733877 TAGGTTGCCAATGGTG-CCGAGGCTC
131 TAGGTTGCCGATGGTGCCCGAGGCTC
63733902 TCGCACATCC
Statistics
Matches: 492, Mismatches: 76, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
211 8 0.02
212 108 0.22
213 335 0.68
214 41 0.08
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.18
Consensus pattern (214 bp):
CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
GGCTCCCGCACAACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
TAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAG
GCTCCCGTACGACCAGGGG
Found at i:63733942 original size:42 final size:41
Alignment explanation
Indices: 63733882--63733992 Score: 114
Period size: 42 Copynumber: 2.7 Consensus size: 41
63733872 GGTCCTAGGT
* * * ** *
63733882 TGCCAATGGTGCCGAGGCTCTCGCACATCCTTGCACCAAGG
1 TGCCGATGGTGCCAAGGCTCCCGCACATCCGAGCACCAAAG
63733923 TGCCGATGGTGCCCAAGGCTCCCGCACATCCGAGCACCAAAG
1 TGCCGATGGTG-CCAAGGCTCCCGCACATCCGAGCACCAAAG
* * * *
63733965 TGCTGATGGTCACCGAGGCTCCTGCACA
1 TGCCGATGGT-GCCAAGGCTCCCGCACA
63733993 ACCAAGAGCC
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 10 0.17
42 48 0.83
ACGTcount: A:0.21, C:0.35, G:0.27, T:0.17
Consensus pattern (41 bp):
TGCCGATGGTGCCAAGGCTCCCGCACATCCGAGCACCAAAG
Found at i:63734025 original size:43 final size:43
Alignment explanation
Indices: 63733108--63734025 Score: 897
Period size: 43 Copynumber: 21.6 Consensus size: 43
63733098 CATCCAACAT
* * **
63733108 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
63733151 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCGA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
63733192 CAGCAAGG-TGCCGATGGTGCCCAAGTCTCCCGCATGACCAAGGG
1 C--CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63733236 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63733279 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63733322 CCTAGGTTGCCGATGGTGTCCGAGGCT-CCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63733364 CCTAGG-TGCCGATGGTGCCCGAGGATCCCGCACAACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63733406 CCTAGGTTACCGATGGTGCCCGACGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
63733449 CCTAGGTTGCTGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
63733492 CCTAGGTTGCCGATGGTG-CCGAGGCTCTCC-TATAACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTC-CCGCACGACCAAGGG
* * *
63733534 CCTAGGTTGCCGATGGTG-CCGAGACTCCCGTACGACCAAGTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63733576 CCTAGGTTACCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** * * *
63733619 CCTAGGTTGCCGATGGTGTTCGAGGCTCCCGTAC-ATCTAAGCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
63733662 CCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63733704 CCTAGGTTGCTG-TGGGTGTCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGAT-GGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63733747 CCTAGGTTACGGATGGTG-CCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
63733789 CCTAGGTTGCCGATGGTGCCTGAGGCTCCCGTATGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
63733832 CCTAGGTTATCGATGGTGCCCGAGGCTCCCGTACGACCAAGGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** **
63733875 CCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * **
63733917 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCGAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
63733959 CCAAAG-TGCTGATGGT-CACCGAGGCTCCTGCACAACCAAGAG
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGG
* *
63734001 CCTAGTTTGCCGATGGTGTCCGAGG
1 CCTAGGTTGCCGATGGTGCCCGAGG
63734026 TGTCCGAGGC
Statistics
Matches: 750, Mismatches: 103, Indels: 44
0.84 0.11 0.05
Matches are distributed among these distances:
41 33 0.04
42 293 0.39
43 419 0.56
44 5 0.01
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:63734358 original size:24 final size:24
Alignment explanation
Indices: 63734331--63734377 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
63734321 TTCCGGGATG
*
63734331 GCTCACCGGAGCACCGTCGGGAAA
1 GCTCACCGGAGCACCGCCGGGAAA
63734355 GCTCACCGGAGCACCGCCGGGAA
1 GCTCACCGGAGCACCGCCGGGAA
63734378 CCTAACCGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.36, G:0.34, T:0.06
Consensus pattern (24 bp):
GCTCACCGGAGCACCGCCGGGAAA
Found at i:63738879 original size:177 final size:178
Alignment explanation
Indices: 63738547--63738900 Score: 460
Period size: 177 Copynumber: 2.0 Consensus size: 178
63738537 TTTTAATTGA
* * * * * *
63738547 AAATTTTTCCTGTTGGCTCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGATGGAATGGC
1 AAATTTTTCCTGTTCGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCA--ACGGAACGAC
* * * * *
63738612 ATAAAATTGAACAAGTTCCTGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCACGGCCCC
64 AGAAAATTGAACAAGTGCCCGGACCACCAACAGTTGAGAGCTCGCACCCGCACCACCACGACCCC
* * * *
63738677 CGTTGTGCCATGTTTCCCAAGGGGGCGGCACGGTCAAGTGTCTAACTTAG
129 CGTTGTGCCATATTCCCCAAGGGGGCGGCAAGGCCAAGTGTCTAACTTAG
* * *
63738727 AAATCTTTT-CTGTTCGCCCAAAACAAATACAAGAGGCCGAATGAAGTATGGC-ACGGCACGACA
1 AAAT-TTTTCCTGTTCGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCAACGGAACGACA
* * *
63738790 GAAAATTGAACAAGTGCCCGGACCACCAACAGTTGAGAGCTCGCACTCGCACCACGACGACCCCT
65 GAAAATTGAACAAGTGCCCGGACCACCAACAGTTGAGAGCTCGCACCCGCACCACCACGACCCCC
* *
63738855 GTTGTGCCATATTCCCCGAGGGGGCGGCAAGGCCAAGTGTTTAACT
130 GTTGTGCCATATTCCCCAAGGGGGCGGCAAGGCCAAGTGTCTAACT
63738901 AACTCCTTAC
Statistics
Matches: 150, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
177 104 0.69
180 42 0.28
181 4 0.03
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.19
Consensus pattern (178 bp):
AAATTTTTCCTGTTCGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCAACGGAACGACAG
AAAATTGAACAAGTGCCCGGACCACCAACAGTTGAGAGCTCGCACCCGCACCACCACGACCCCCG
TTGTGCCATATTCCCCAAGGGGGCGGCAAGGCCAAGTGTCTAACTTAG
Found at i:63749017 original size:43 final size:43
Alignment explanation
Indices: 63748951--63749746 Score: 722
Period size: 43 Copynumber: 18.7 Consensus size: 43
63748941 GAGGGTGTCA
* * *
63748951 ATGGTGCCTGAGGCTCTCACACGACC-AGGGCCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCG
* **
63748994 ATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTATCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
*
63749037 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
63749080 ATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
** *
63749122 ATGGTGTTCGAGGATCCCGCACGACCAAGGGCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* * * *
63749165 ATAGTGTCTGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* *
63749208 ATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCG
* * * *
63749251 ATGGTGTCCGAGGCTCCCGCGC-ATCCAAGCGCCGAGG-TGCCG
1 ATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCG
* * * * *
63749293 ATGGTACCCGAGGCTCTCGTACGACCAAGGGCCTAGGTCGTCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* *
63749336 ATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* * * * *
63749379 ATGGTG-CCGAGGTTCTCGCACGTCCAATGGCCTAGGTTACCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* * * *
63749421 ATGATGCCCGAGGCACCCGTACGACCAAGGACCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
*** * * *
63749464 ATGGTGCCCGAGGCTCTTACACGACCAAGGTCTTAGGTTGCCA
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* * ** ** *
63749507 ATGGT-ACCGAGGCTCTCGCAC-ATCCTTGCACCAAGG-TGCCG
1 ATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCG
* * * ** * *
63749548 ATGGTGCCCAAGGCTCCCGCA-TATCCGAGCACCAAGG-TGCTG
1 ATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCG
* * * *
63749590 ATGGT-CACCGAGGCTCCTGCACAACCAAGAGCCTAGTTTGCCG
1 ATGGTGC-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* * * *
63749633 ATGGTGTCCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TACCG
1 ATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCG
* * * * ** * *
63749676 ATGCT-CGCGAGGCTCCCTCACCACTGACGTCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* * * * *
63749718 ATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAG
63749747 CAGCAATGTG
Statistics
Matches: 617, Mismatches: 118, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
41 16 0.03
42 208 0.34
43 386 0.63
44 7 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (43 bp):
ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
Found at i:63749134 original size:85 final size:86
Alignment explanation
Indices: 63748951--63749662 Score: 739
Period size: 85 Copynumber: 8.3 Consensus size: 86
63748941 GAGGGTGTCA
* * *
63748951 ATGGTGCCTGAGGCTCTCACACGACC-AGGGCCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
1 ATGGTGCCCGAGGCTCTCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA
* **
63749015 CGACCAGGGGCCTAGGTTATCG
65 CGACCAAGGGCCTAGGTTGCCG
63749037 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
63749101 GACCAAGGGCCTAGGTTGCCG
66 GACCAAGGGCCTAGGTTGCCG
** * * * * *
63749122 ATGGTGTTCGAGGATCCCGCACGACCAAGGGCCTAGGTTGCCGATAGTGTCTGAGGCTTCCGCAC
1 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
63749187 GACCAAGGGCCTAGGTTGCCG
66 GACCAAGGGCCTAGGTTGCCG
*
63749208 ATGGTGTCCGAGGCT-TCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
1 ATGGTGCCCGAGGCTCT-CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
* * *
63749271 GC-ATCCAAGCGCCGAGG-TGCCG
64 ACGA-CCAAGGGCCTAGGTTGCCG
* * * *
63749293 ATGGTACCCGAGGCTCTCGTACGACCAAGGGCCTAGGTCGTCGATGGTGTCCGAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
*
63749358 GACCAAGGGCCTAGGTTGCAG
66 GACCAAGGGCCTAGGTTGCCG
* * * * * * * *
63749379 ATGGTG-CCGAGGTTCTCGCACGTCCAATGGCCTAGGTTACCGATGATGCCCGAGGCACCCGTAC
1 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
*
63749443 GACCAAGGACCTAGGTTGCCG
66 GACCAAGGGCCTAGGTTGCCG
** * * * * *
63749464 ATGGTGCCCGAGGCTCTTACACGACCAAGGTCTTAGGTTGCCAATGGT-ACCGAGGCTCTCGCAC
1 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
** ** *
63749528 -ATCCTTGCACCAAGG-TGCCG
66 GA-CCAAGGGCCTAGGTTGCCG
* * * * ** * * ** *
63749548 ATGGTGCCCAAGGCTCCCGCA-TATCCGAGCACCAAGG-TGCTGATGGTCACCGAGGCTCCTGCA
1 ATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA
* * *
63749611 CAACCAAGAGCCTAGTTTGCCG
65 CGACCAAGGGCCTAGGTTGCCG
* *
63749633 ATGGTGTCCGAGGCTCCCGCAC-ATCCAAGG
1 ATGGTGCCCGAGGCTCTCGCACGA-CCAAGG
63749663 CACCAAGGTA
Statistics
Matches: 524, Mismatches: 86, Indels: 33
0.81 0.13 0.05
Matches are distributed among these distances:
83 9 0.02
84 52 0.10
85 274 0.52
86 185 0.35
87 4 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (86 bp):
ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
GACCAAGGGCCTAGGTTGCCG
Found at i:63749188 original size:128 final size:129
Alignment explanation
Indices: 63748951--63749746 Score: 733
Period size: 128 Copynumber: 6.2 Consensus size: 129
63748941 GAGGGTGTCA
* * *
63748951 ATGGTG-CCTGAGGCTCTCACACGACC-AGGGCCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
1 ATGGTGTCC-GAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
* *
63749014 ACGACCAGGGGCCTAGGTTATCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
64 ACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
63749079 G
129 G
* *
63749080 ATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTTCGAGGATCCCGCAC
1 ATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * *
63749144 GACCAAGGGCCTAGGTTGCCGATAGTGTCTGAGGCT-TCCGCACGACCAAGGGCCTAGGTTGCCG
66 GACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCT-CGCACGACCAAGGGCCTAGGTTGCCG
* *
63749208 ATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCG
1 ATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA
* * * * * * *
63749272 C-ATCCAAGCGCCGAGG-TGCCGATGGTACCCGAGGCTCTCGTACGACCAAGGGCCTAGGTCGTC
65 CGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
63749335 G
129 G
* * *
63749336 ATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGTG-CCGAGGTTCTCGCAC
1 ATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * * * * *
63749400 GTCCAATGGCCTAGGTTACCGATGATGCCCGAGGCACCCGTACGACCAAGGACCTAGGTTGCCG
66 GACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCG
* *** * * * * *
63749464 ATGGTGCCCGAGGCTCTTACACGACCAAGGTCTTAGGTTGCCAATGGT-ACCGAGGCTCTCGCAC
1 ATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
** ** * * * * * * ** * *
63749528 -ATCCTTGCACCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCA-TATCCGAGCACCAAGG-TGCT
66 GA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCC
63749589 G
129 G
** * * * *
63749590 ATGGTCACCGAGGCTCCTGCACAACCAAGAGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
1 ATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * * * * * ** * *
63749655 -ATCCAAGGCACCAAGG-TACCGATGCT-CGCGAGGCTCCCTCACCACTGACGTCCTAGGTTGCC
66 GA-CCAAGG-GCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
63749717 G
129 G
* * * *
63749718 ATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 ATGGTGTCCGAGGCTCCCGCACGACCAAG
63749747 CAGCAATGTG
Statistics
Matches: 550, Mismatches: 101, Indels: 33
0.80 0.15 0.05
Matches are distributed among these distances:
126 43 0.08
127 93 0.17
128 337 0.61
129 77 0.14
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (129 bp):
ATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
GACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCG
Found at i:63749687 original size:85 final size:85
Alignment explanation
Indices: 63748951--63749746 Score: 716
Period size: 85 Copynumber: 9.3 Consensus size: 85
63748941 GAGGGTGTCA
* * *
63748951 ATGGTGCCTGAGGCTCTCACACGACC-AGGGCCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCA
* **
63749015 CGACCAGGGGCCTAGGTTATCG
64 CGACCAAGGGCCTAGGTTGCCG
*
63749037 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACG
63749102 ACCAAGGGCCTAGGTTGCCG
66 ACCAAGGGCCTAGGTTGCCG
** * * * *
63749122 ATGGTGTTCGAGGATCCCGCACGACCAAGGGCCTAGGTTGCCGATAGTGTCTGAGGCTTCCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCAC
63749187 GACCAAGGGCCTAGGTTGCCG
65 GACCAAGGGCCTAGGTTGCCG
* * *
63749208 ATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCG
1 ATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCA
* *
63749272 C-ATCCAAGCGCCGAGG-TGCCG
64 CGA-CCAAGGGCCTAGGTTGCCG
* * * * *
63749293 ATGGTACCCGAGGCTCTCGTACGACCAAGGGCCTAGGTCGTCGATGGTGTCCGAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCAC
*
63749358 GACCAAGGGCCTAGGTTGCAG
65 GACCAAGGGCCTAGGTTGCCG
* * * * * * * *
63749379 ATGGTG-CCGAGGTTCTCGCACGTCCAATGGCCTAGGTTACCGATGATGCCCGAGGCACCCGTAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCAC
*
63749443 GACCAAGGACCTAGGTTGCCG
65 GACCAAGGGCCTAGGTTGCCG
*** * * * * *
63749464 ATGGTGCCCGAGGCTCTTACACGACCAAGGTCTTAGGTTGCCAATGGTACCGAGGCTCTCGCAC-
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACG
** ** *
63749528 ATCCTTGCACCAAGG-TGCCG
66 A-CCAAGGGCCTAGGTTGCCG
* * * ** * * * *
63749548 ATGGTGCCCAAGGCTCCCGCA-TATCCGAGCACCAAGG-TGCTGATGGTCACCGAGGCTCCTGCA
1 ATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT-GCCGAGGCTCCCGCA
* * *
63749611 CAACCAAGAGCCTAGTTTGCCG
64 CGACCAAGGGCCTAGGTTGCCG
* * * * * *
63749633 ATGGTGTCCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TACCGATGCT-CGCGAGGCTCCCTC
1 ATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGC-CGAGGCTCCCGC
* ** * *
63749695 ACCACTGACGTCCTAGGTTGCCG
63 ACGACCAAGGGCCTAGGTTGCCG
* * * * *
63749718 ATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAG
63749747 CAGCAATGTG
Statistics
Matches: 589, Mismatches: 104, Indels: 35
0.81 0.14 0.05
Matches are distributed among these distances:
83 9 0.02
84 53 0.09
85 324 0.55
86 199 0.34
87 4 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (85 bp):
ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACG
ACCAAGGGCCTAGGTTGCCG
Found at i:63756499 original size:181 final size:181
Alignment explanation
Indices: 63756193--63756550 Score: 542
Period size: 181 Copynumber: 2.0 Consensus size: 181
63756183 TTTTAATTGA
* * *
63756193 AAATTTTTCCTGTTGGCCCAAAAAAAAATACAAGAAGCCGAATTAAATATGGCATGATGGCATGG
1 AAATTTTTCCTGTTCGCCCAAAAAAAAATACAAGAAGCCGAATGAAATATGGCAGGATGGCATGG
* *
63756258 CAGAAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCACACCCGCACCACCACGGCCC
66 CAGAAAATTGAACAAGTGCCCAGACCACCAACAGTTGGGAGCTCACACCCGCAACACCACGGCCC
* * * *
63756323 CCGTTGTGCCATGTT-TCTCGAGGGGGCGGCACGGTCAAGTGTCTAACATAG
131 CCGTTGTGCCATATTCCCT-GAGGGGGCGGCAAGGCCAAGTGTCTAACATAG
* *
63756374 AAATTTTT-CTGTTCGCCC-AAAAAAAATACAAGAGGCCGAATGAAGTATGGCACGGCATGGCAT
1 AAATTTTTCCTGTTCGCCCAAAAAAAAATACAAGAAGCCGAATGAAATATGGCA-GG-ATGGCAT
* *
63756437 GGCAGAAAATTGAACAAGTGCCCAGACCACCAACAGTTGGGAGCTCGCACTCGCAACACCACGGC
64 GGCAGAAAATTGAACAAGTGCCCAGACCACCAACAGTTGGGAGCTCACACCCGCAACACCACGGC
*
63756502 CCCCGTTGTGCCATATTCCCTGAGGGGGCGGCAAGGCCAAGTGTTTAAC
129 CCCCGTTGTGCCATATTCCCTGAGGGGGCGGCAAGGCCAAGTGTCTAAC
63756551 TAACTCCTTA
Statistics
Matches: 160, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
179 31 0.19
180 10 0.06
181 117 0.73
182 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.25, T:0.19
Consensus pattern (181 bp):
AAATTTTTCCTGTTCGCCCAAAAAAAAATACAAGAAGCCGAATGAAATATGGCAGGATGGCATGG
CAGAAAATTGAACAAGTGCCCAGACCACCAACAGTTGGGAGCTCACACCCGCAACACCACGGCCC
CCGTTGTGCCATATTCCCTGAGGGGGCGGCAAGGCCAAGTGTCTAACATAG
Found at i:63762033 original size:128 final size:128
Alignment explanation
Indices: 63761826--63762895 Score: 956
Period size: 128 Copynumber: 8.4 Consensus size: 128
63761816 AGGGTGCCCC
* * * * *
63761826 TGGTGCTCGAGGCAT-CCGCAC-ATCCAATGTCCTAGGTTTCCTATGGTGTCCGAGGCTCCCGCA
1 TGGTGCCCGAGGC-TCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA
* * * * * * *
63761889 CATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGTAC-ATCCGA-GGCAGCAAGG-TAC
64 CATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC--CTAGGTTGC
63761951 CGA
126 CGA
* * * *
63761954 TGGTGCCCAAGGCTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGTACA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA
* * *
63762019 TCCAAGCACGAAGGTGCCGATGGTGCCTC-AGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGA
66 TCCAAGCACCAAGGTGCCGATGGTGCC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* * * *
63762082 TGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGATCCCGGACG
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-
* ** * * ** * *
63762147 A-CCAGGGGCCTAAGTTACCGATGGTAACCGAGGCTCCCGCACGACCAGGGGTCTAGGTTGCCGA
65 ATCCAAGCACC-AAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
** * *
63762211 TGGTGCCCGAGGCTCTAGCACAACCAAGGGCCTAGGTTGCAGATGGTG-CCGAGGCTCCCGCACG
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-
** * ** *
63762275 A-CCAAGGGCCTAGGTGCCGATGGTGTTCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCGA
65 ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* * * * *
63762338 TGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGTTCGAGGCTCTCGCCC
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * *
63762402 ATCCAAGCGCCAAGGTGCCGATGGTGCCCGAGGGTCCCGTACGACCAAGGGCCTAGGTTGTCGA
65 ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* ** * * *
63762466 TGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGAGGATAGTG-CCGAGGCTCTCGCATG
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA-C
** * * * * * *
63762530 A-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGACTCCTGTACGACCAAGGGCCTAGGTTACCGA
65 ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* * *
63762594 TGGTGCCCGAGGCTCCCGCACGACCAAGGTCCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCACA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA
** * * * * ** * * *
63762658 TCCTTGCACCAAGGTGCCGATGGTGCCCAAGGCTCCAGCAC-ATTCGAGCACCAACG-TGCTGA
66 TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
* * * * * *
63762720 TGGT-CACTGAGGCTCCTGCACAACCAAGAGCCTAGTTTGCCGATGGTGTCCAAGGCTCCCGCAC
1 TGGTGC-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * * *
63762784 ATTCAAGGCACCAAGGTGCCGATGCT-CGCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCC
65 ATCCAA-GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCC
63762846 GA
127 GA
* * * * * ** * *
63762848 TGCT-CGCGAGGCTCTCGTACCACTGATGTCCTAGGTTGCCGATGGTGT
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGT
63762896 TCTAGGTTAC
Statistics
Matches: 779, Mismatches: 142, Indels: 43
0.81 0.15 0.04
Matches are distributed among these distances:
125 1 0.00
126 45 0.06
127 209 0.27
128 428 0.55
129 96 0.12
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (128 bp):
TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA
TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
Found at i:63762070 original size:85 final size:86
Alignment explanation
Indices: 63761826--63762833 Score: 835
Period size: 85 Copynumber: 11.8 Consensus size: 86
63761816 AGGGTGCCCC
* * * * * *
63761826 TGGTGCTCGAGGCAT-CCGCACATCCAATGTCCTAGGTTTCCTATGGTGTCCGAGGCTCCCGCAC
1 TGGTGCCCGAGGC-TCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
** * *
63761890 -ATCCAAGCACCAAGG-TGCCAA
65 GA-CCAAGGGCCTAGGTTGCCGA
* * * * * * *
63761911 TGCTGCTCGAGGCTCCCGTACATCCGA-GGCAGCAAGG-TACCGATGGTGCCCAAGGCTCCCGCA
1 TGGTGCCCGAGGCTCCCGCACATCCAAGGGC--CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
* *
63761974 TGACCAAGGGCCTAGGTTACCGA
64 CGACCAAGGGCCTAGGTTGCCGA
* * ** ** *
63761997 TGGTGTCCGAGGCTCCCGTACATCCAAGCACGAAGG-TGCCGATGGTGCCTC-AGGCTCTCGCAC
1 TGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCC-CGAGGCTCCCGCAC
*
63762060 GACCAGGGGCCTAGGTTGCCGA
65 GACCAAGGGCCTAGGTTGCCGA
* * *
63762082 TGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGATCCCGGAC
1 TGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * *
63762146 GACCAGGGGCCTAAGTTACCGA
65 GACCAAGGGCCTAGGTTGCCGA
** * * **
63762168 TGGTAACCGAGGCTCCCGCACGA-CCAGGGGTCTAGGTTGCCGATGGTGCCCGAGGCTCTAGCAC
1 TGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* *
63762232 AACCAAGGGCCTAGGTTGCAGA
65 GACCAAGGGCCTAGGTTGCCGA
** *
63762254 TGGTG-CCGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGTTCGAGGCTCCCGCAT
1 TGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
63762316 GACCAAGGGCCTAGGTTGCCGA
65 GACCAAGGGCCTAGGTTGCCGA
* * ** * *
63762338 TGGTGTCCGAGGCTTCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGTTCGAGGCTCTCGC-CC
1 TGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
* *
63762402 ATCCAAGCGCCAAGG-TGCCGA
66 A-CCAAGGGCCTAGGTTGCCGA
* * * *
63762423 TGGTGCCCGAGGGTCCCGTACGA-CCAAGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCAC
1 TGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
**
63762487 GACCAAGGGCCTAGGTTGAGGA
65 GACCAAGGGCCTAGGTTGCCGA
* * * * * * *
63762509 TAGTG-CCGAGGCTCTCGCATGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGACTCCTGTAC
1 TGGTGCCCGAGGCTCCCGCA-CATCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
*
63762572 GACCAAGGGCCTAGGTTACCGA
65 GACCAAGGGCCTAGGTTGCCGA
* * *
63762594 TGGTGCCCGAGGCTCCCGCACGA-CCAAGGTCCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC
1 TGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
** ** *
63762657 -ATCCTTGCACCAAGG-TGCCGA
65 GA-CCAAGGGCCTAGGTTGCCGA
* * * * ** * * * * *
63762678 TGGTGCCCAAGGCTCCAGCACATTCGAGCACCAACG-TGCTGATGGT-CACTGAGGCTCCTGCAC
1 TGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCAC
* * *
63762741 AACCAAGAGCCTAGTTTGCCGA
65 GACCAAGGGCCTAGGTTGCCGA
* * * * * * *
63762763 TGGTGTCCAAGGCTCCCGCACATTCAAGGCACCAAGG-TGCCGATGCT-CGCGAGGCTCCCGCAC
1 TGGTGCCCGAGGCTCCCGCACATCCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
63762826 -ATCCAAGG
65 GA-CCAAGG
63762834 CACCAAGGTG
Statistics
Matches: 756, Mismatches: 139, Indels: 56
0.79 0.15 0.06
Matches are distributed among these distances:
83 9 0.01
84 103 0.14
85 392 0.52
86 251 0.33
87 1 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (86 bp):
TGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
ACCAAGGGCCTAGGTTGCCGA
Found at i:63762085 original size:43 final size:43
Alignment explanation
Indices: 63761826--63762894 Score: 835
Period size: 43 Copynumber: 25.1 Consensus size: 43
63761816 AGGGTGCCCC
* * * * *
63761826 TGGTGCTCGAGGCAT-CCGCAC-ATCCAATGTCCTAGGTTTCCTA
1 TGGTGCCCGAGGC-TCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
* ** * *
63761869 TGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAA
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
* * * * * *
63761911 TGCTGCTCGAGGCTCCCGTAC-ATCCGA-GGCAGCAAGG-TACCGA
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC--CTAGGTTGCCGA
* * *
63761954 TGGTGCCCAAGGCTCCCGCATGACCAAGGGCCTAGGTTACCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* * ** **
63761997 TGGTGTCCGAGGCTCCCGTAC-ATCCAAGCACGAAGG-TGCCGA
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
* *
63762039 TGGTGCCTC-AGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGA
1 TGGTGCC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
*
63762082 TGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* * * * *
63762125 TGGTGCCCGAGGATCCCGGACGACCAGGGGCCTAAGTTACCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
** * *
63762168 TGGTAACCGAGGCTCCCGCACGACCAGGGGTCTAGGTTGCCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
** * *
63762211 TGGTGCCCGAGGCTCTAGCACAACCAAGGGCCTAGGTTGCAGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
63762254 TGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
** *
63762295 TGGTGTTCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* *
63762338 TGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCGA
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
** * * * *
63762381 TGGTGTTCGAGGCTCTCGC-CCATCCAAGCGCCAAGG-TGCCGA
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
* * *
63762423 TGGTGCCCGAGGGTCCCGTACGACCAAGGGCCTAGGTTGTCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* **
63762466 TGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGAGGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* * * *
63762509 TAGTG-CCGAGGCTCTCGCATGACCAAGGGCCTAGGTTACCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* * * *
63762551 TGGTGCCCGAGACTCCTGTACGACCAAGGGCCTAGGTTACCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* *
63762594 TGGTGCCCGAGGCTCCCGCACGACCAAGGTCCTAGGTTGCCAA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* ** ** *
63762637 TGGTG-CCGAGGCTCTCGCAC-ATCCTTGCACCAAGG-TGCCGA
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
* * * * ** * * *
63762678 TGGTGCCCAAGGCTCCAGCAC-ATTCGAGCACCAACG-TGCTGA
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
* * * * *
63762720 TGGT-CACTGAGGCTCCTGCACAACCAAGAGCCTAGTTTGCCGA
1 TGGTGC-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
* * * * *
63762763 TGGTGTCCAAGGCTCCCGCAC-ATTCAAGGCACCAAGG-TGCCGA
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGA
* * * *
63762806 TGCT-CGCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGA
1 TGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGA
* * * * * ** * *
63762848 TGCT-CGCGAGGCTCTCGTACCACTGATGTCCTAGGTTGCCGA
1 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
63762890 TGGTG
1 TGGTG
63762895 TTCTAGGTTA
Statistics
Matches: 842, Mismatches: 155, Indels: 58
0.80 0.15 0.05
Matches are distributed among these distances:
41 28 0.03
42 323 0.38
43 483 0.57
44 8 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (43 bp):
TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
Found at i:63762850 original size:42 final size:42
Alignment explanation
Indices: 63762772--63762861 Score: 171
Period size: 42 Copynumber: 2.1 Consensus size: 42
63762762 ATGGTGTCCA
*
63762772 AGGCTCCCGCACATTCAAGGCACCAAGGTGCCGATGCTCGCG
1 AGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTCGCG
63762814 AGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTCGCG
1 AGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTCGCG
63762856 AGGCTC
1 AGGCTC
63762862 TCGTACCACT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.13
Consensus pattern (42 bp):
AGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGCTCGCG
Found at i:63763164 original size:24 final size:25
Alignment explanation
Indices: 63763137--63763201 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 25
63763127 GATGACTCAA
* *
63763137 CGGAGTACCGCCGGGAA-AGCTCGC
1 CGGAGCACCGCCGGGAATAGATCGC
* *
63763161 CGGAGCACTGCC-GGAATGGATCGC
1 CGGAGCACCGCCGGGAATAGATCGC
63763185 CGGAGCACCGCCGGGAA
1 CGGAGCACCGCCGGGAA
63763202 CCTAACCGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 4 0.12
24 26 0.76
25 4 0.12
ACGTcount: A:0.22, C:0.32, G:0.38, T:0.08
Consensus pattern (25 bp):
CGGAGCACCGCCGGGAATAGATCGC
Found at i:63770023 original size:182 final size:180
Alignment explanation
Indices: 63769704--63770030 Score: 503
Period size: 182 Copynumber: 1.8 Consensus size: 180
63769694 TTTCCTATTG
* * * * *
63769704 GCCCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGATGGCATGGCAGAAAATTGAACAAG
1 GCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCAGGACGGCACGACAGAAAATTGAACAAG
* * * *
63769769 TGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCAGCACGGCCCCCGTTGTGCCATGTTT
66 TGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCACGGCCCCCATTGTGCCATATTC
*
63769834 TCCGAGGGGGCGGCATAGTCAAGTGTCTAACTTAGAAATTATTTCTGTTC
131 CCCGAGGGGGCGGCATAGTCAAGTGTCTAACTTAGAAATTATTTCTGTTC
*
63769884 GCCCAAAACAAATACAA-AAGGCCGAATGAAGTATGGCACGGCACGGCACGACAGAAAATTGAAC
1 GCCCAAAACAAATACAAGAA-GCCGAATGAAATATGGCA-GG-ACGGCACGACAGAAAATTGAAC
* *
63769948 AAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACTCGCACCACCACGGCCCCCATTTTGCCATA
63 AAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCACGGCCCCCATTGTGCCATA
63770013 TTCCCCGAGGGGGCGGCA
128 TTCCCCGAGGGGGCGGCA
63770031 AGGCCACGTG
Statistics
Matches: 131, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
179 2 0.02
180 33 0.25
181 1 0.01
182 95 0.73
ACGTcount: A:0.30, C:0.28, G:0.25, T:0.17
Consensus pattern (180 bp):
GCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCAGGACGGCACGACAGAAAATTGAACAAG
TGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCACGGCCCCCATTGTGCCATATTC
CCCGAGGGGGCGGCATAGTCAAGTGTCTAACTTAGAAATTATTTCTGTTC
Found at i:63777313 original size:43 final size:43
Alignment explanation
Indices: 63777184--63777829 Score: 609
Period size: 43 Copynumber: 15.1 Consensus size: 43
63777174 CTACTGCTCA
* * * * * *
63777184 AGGCACCCGCATATCCAACGTCCTAGGTTGCCTATGGTGTCCG
1 AGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * ** *
63777227 AGGCTCCCGCACATCCAA-GACCAAGG-TGCCAATACTGCTCG
1 AGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
63777268 AGGCTCCCGCACATCCGA-GTCAGCTAGG-TGCCGATGGTGCCCG
1 AGGCTCCCGCACATCCAAGGGC--CTAGGTTGCCGATGGTGCCCG
* * *
63777311 AGGCTCCCGCATGA-CCAAGGGCCTAGGTTACTGATGGTGCCCG
1 AGGCTCCCGCA-CATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
63777354 AGGCTCCCGCAGGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCG
1 AGGCTCCCGCA-CATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** ** *
63777397 AGGCTCCCGTACATCCAAGCACGAAGG-TGCCGATGGCGCCCG
1 AGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
63777439 AGGCTCCCGTACGAT-CAGGGGCCTATGTTGCCGATGGTGCCCA
1 AGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
63777482 AGGCTCCCGCACGA-CCAATGGCCTAGG-TGCCGATGGTGCCCG
1 AGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
63777524 AGGCTCTCACACAACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 AGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
63777567 AGGCTCCCGCACAACCAGGGGCCTAGGTTACCGATGGTGCCCA
1 AGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
63777610 AGGCTCCCGCACGA-CCAGGGGCCTAGGTTACCGATGGTGTCTG
1 AGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
63777653 AGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCAATGGTGTCCG
1 AGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * * *
63777696 AGGCTTCTGCATATCCAAGGGCCTAGATTACCGATGGTGTCCG
1 AGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
63777739 AGGCTCCCGCACATCCAAGGGCCAAGGTTGTCGATAGTGTCCG
1 AGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
63777782 AGGCTCCCGTACGA-CCAAGGGCCTAGGTTGCAGATGGTG-CCG
1 AGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
63777824 AGGCTC
1 AGGCTC
63777830 TAATAAATGC
Statistics
Matches: 509, Mismatches: 80, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
41 30 0.06
42 88 0.17
43 386 0.76
44 5 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.17
Consensus pattern (43 bp):
AGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
Found at i:63780751 original size:31 final size:31
Alignment explanation
Indices: 63780713--63780779 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
63780703 CAATACGCAT
*
63780713 GCCAAGCATAGAGCTAAATAGTTACCTTTGG
1 GCCAAGCATAGAGCTAAATAGTTACATTTGG
*
63780744 GCCAAGCATAGAGCTAAATAGTTGCATTTGG
1 GCCAAGCATAGAGCTAAATAGTTACATTTGG
63780775 GCCAA
1 GCCAA
63780780 CGGAGTATTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (31 bp):
GCCAAGCATAGAGCTAAATAGTTACATTTGG
Found at i:63781509 original size:43 final size:43
Alignment explanation
Indices: 63781448--63782646 Score: 834
Period size: 43 Copynumber: 28.6 Consensus size: 43
63781438 AGACTGATCG
*
63781448 GCCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * * *
63781491 GCCGATGGTGCCAGAGGCTCCCGCAC-ATCTAGGTACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTT
* * *
63781533 GCCGATGGTGCCCAAAGCTCCCGTACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * *
63781576 GCCGATAGTGCCCGAGG-TACCCGCACGACCAAGGACCTTGGTT
1 GCCGATGGTGCCCGAGGCT-CCCGCACGACCAAGGGCCTAGGTT
** *
63781619 GCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
*
63781661 GCCGATGGTGCCCGAGGCTCCCGCACGACCGAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * ** *
63781704 GCTGATGGTGCCCGAGGCTCCCACAC-ATCCAAGTACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
* * *
63781746 GCCAATGGTGTCCGAGGCTCTCGCAC-ATCCAA--GCACTAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTT
* *
63781788 GCCGATGGTGCCCGAGGTTCCCGCACAACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * *
63781831 GCCGATGGT-ACCGAGGCTCTCGCACGACCAAGGGCGTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * * *
63781873 GCCGATGGTGCCTGGGGCTCTCGCACGATCAAGGGCTTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
*
63781916 GCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
63781959 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * ** ** *
63782002 ACCGATGGTGCCCAAAG-TTTCGCAC-ATCCAAGCACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
* * * *** *
63782043 ACCGATGGTGTCCGAGGCTCCCTCAC-ATCCAAGCATCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
63782085 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * *
63782128 ACCAATAGTGTCCGAGGCTCCCGCAC-ATCCAA--GCACTAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTT
* * * * *** * *
63782170 GCCGATAGTGTCCGAGACTCCTTG-GTTACCGATGG--TA---T
1 GCCGATGGTGCCCGAGGCTCC-CGCACGACCAAGGGCCTAGGTT
* * * * * *
63782208 -CCGA--G-GCTCTA-GCACATC-CAAGCACCAAGGTGCCGATGG-T
1 GCCGATGGTGCCCGAGGCTC-CCGCACG-ACCAAGG-GCCTA-GGTT
* * * * *
63782248 GTTCGA--G-GCTCC-A-ACACATC-CAAGCACC-A------AGG-T
1 G-CCGATGGTGC-CCGAGGCTC-CCGCACG-ACCAAGGGCCTAGGTT
* *
63782281 GCCGATGGTGCCCGAGGCTCCCGCACGACCGAGGTCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* ** *
63782324 GTCGATGGTG-CCGAGGCTCTTGCACAACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* *
63782366 GCCGATGGTACCCGAGGCTCCCGCACGATCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* ** * *
63782409 ACCGATGGTGCTTGAGGCTCTCGCACGACTAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
*
63782452 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * ** *
63782495 GCCAATGGTG--TGAGGCTCTCGCAC-ATCCAAGCACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
* * *
63782535 GCCGATGGTGCCCGAGGCTCCTGCACAACCAAGGGCCTAGTTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * ** * * * *
63782578 ACCGATAGTGTTCGAGGCTCCCACAC-ATCAGAGGCACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGG-GCCTAGGTT
* *
63782621 GCCGATGCTGCTCGAGGCTCCCGCAC
1 GCCGATGGTGCCCGAGGCTCCCGCAC
63782647 ATCAGAGCAC
Statistics
Matches: 924, Mismatches: 171, Indels: 122
0.76 0.14 0.10
Matches are distributed among these distances:
32 3 0.00
33 6 0.01
34 12 0.01
35 9 0.01
36 6 0.01
37 5 0.01
38 1 0.00
40 14 0.02
41 42 0.05
42 345 0.37
43 473 0.51
44 8 0.01
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (43 bp):
GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
Found at i:63781599 original size:85 final size:86
Alignment explanation
Indices: 63781448--63782646 Score: 834
Period size: 85 Copynumber: 14.3 Consensus size: 86
63781438 AGACTGATCG
* *
63781448 GCCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCAGAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
63781513 GCAC-ATCTAGGTACCAAGG-T
66 GCACGACCAAGG-ACCTAGGTT
* * * *
63781533 GCCGATGGTGCCCAAAGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATAGTGCCCGAGG-TACC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT-CC
*
63781597 CGCACGACCAAGGACCTTGGTT
65 CGCACGACCAAGGACCTAGGTT
** *
63781619 GCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
63781682 CGCACGACCGAGGGCCTAGGTT
65 CGCACGACCAAGGACCTAGGTT
* * ** * * * *
63781704 GCTGATGGTGCCCGAGGCTCCCACAC-ATCCAAGTACCAAGG-TGCCAATGGTGTCCGAGGCTCT
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
63781767 CGCAC-ATCCAAGCA-CTAAGG-T
65 CGCACGA-CCAAGGACCT-AGGTT
* * * *
63781788 GCCGATGGTGCCCGAGGTTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGT-ACCGAGGCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
63781852 GCACGACCAAGGGCGTAGGTT
66 GCACGACCAAGGACCTAGGTT
* * * * * *
63781873 GCCGATGGTGCCTGGGGCTCTCGCACGATCAAGGGCTTAGGTTGCCGATGGTGCCCAAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
*
63781938 GCACGACCAAGGGCCTAGGTT
66 GCACGACCAAGGACCTAGGTT
* * * **
63781959 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAAG-TTTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
63782023 GCAC-ATCCAAGCACCAAGG-T
66 GCACGA-CCAAGGACCTAGGTT
* * * *** *
63782043 ACCGATGGTGTCCGAGGCTCCCTCAC-ATCCAAGCATCAAGG-TGCCGATGGTGCCCGAGGCTCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
63782106 CGCACGACCAAGGGCCTAGGTT
65 CGCACGACCAAGGACCTAGGTT
* * * * * * *
63782128 ACCAATAGTGTCCGAGGCTCCCGCAC-ATCCAA--GCACTAAGG-TGCCGATAGTGTCCGAGACT
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTTGCCGATGGTGCCCGAGGCT
* ***
63782189 CCTTG-GTTACC---GA--T-GGTAT
63 CC-CGCACGACCAAGGACCTAGGT-T
* * * * * * *
63782208 -CCGA--G-GCTCTA-GCACATC-CAAGCACCAAGGTGCCGATGG-TGTTCGA--G-GCTCC-A-
1 GCCGATGGTGCCCGAGGCTC-CCGCACG-ACCAAGG-GCCTA-GGTTG-CCGATGGTGC-CCGAG
* * * *
63782261 ACACATC-CAAGCACC----A---AGG-T
60 GCTC-CCGCACG-ACCAAGGACCTAGGTT
* * * **
63782281 GCCGATGGTGCCCGAGGCTCCCGCACGACCGAGGTCCTAGGTTGTCGATGGTG-CCGAGGCTCTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
63782345 GCACAACCAAGGGCCTAGGTT
66 GCACGACCAAGGACCTAGGTT
* * * ** *
63782366 GCCGATGGTACCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTACCGATGGTGCTTGAGGCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
63782431 GCACGACTAAGGGCCTAGGTT
66 GCACGACCAAGGACCTAGGTT
* * * *
63782452 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAGGTTGCCAATGGTG--TGAGGCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
63782515 GCAC-ATCCAAGCACCAAGG-T
66 GCACGA-CCAAGGACCTAGGTT
* * * * * **
63782535 GCCGATGGTGCCCGAGGCTCCTGCACAACCAAGGGCCTAGTTTACCGATAGTGTTCGAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
63782600 ACAC-ATCAGAGGCACCAAGG-T
66 GCACGACCA-AGG-ACCTAGGTT
* *
63782621 GCCGATGCTGCTCGAGGCTCCCGCAC
1 GCCGATGGTGCCCGAGGCTCCCGCAC
63782647 ATCAGAGCAC
Statistics
Matches: 895, Mismatches: 157, Indels: 123
0.76 0.13 0.10
Matches are distributed among these distances:
73 1 0.00
74 4 0.00
75 17 0.02
76 21 0.02
77 23 0.03
78 16 0.02
79 11 0.01
80 2 0.00
82 1 0.00
83 64 0.07
84 140 0.16
85 366 0.41
86 229 0.26
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (86 bp):
GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGACCTAGGTT
Found at i:63782238 original size:69 final size:69
Alignment explanation
Indices: 63782124--63782259 Score: 191
Period size: 69 Copynumber: 2.0 Consensus size: 69
63782114 CAAGGGCCTA
* * *
63782124 GGTTACCAATAGTGTCCGAGGCTCCCGCACATCCAAGCACTAAGGTGCCGATAGTGTCCGAGACT
1 GGTTACCAATAGTATCCGAGGCTCCAGCACATCCAAGCACCAAGGTGCCGATAGTGTCCGAGACT
63782189 CCTT
66 CCTT
* * * * * *
63782193 GGTTACCGATGGTATCCGAGGCTCTAGCACATCCAAGCACCAAGGTGCCGATGGTGTTCGAGGCT
1 GGTTACCAATAGTATCCGAGGCTCCAGCACATCCAAGCACCAAGGTGCCGATAGTGTCCGAGACT
63782258 CC
66 CC
63782260 AACACATCCA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 58 1.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (69 bp):
GGTTACCAATAGTATCCGAGGCTCCAGCACATCCAAGCACCAAGGTGCCGATAGTGTCCGAGACT
CCTT
Found at i:63782466 original size:86 final size:85
Alignment explanation
Indices: 63782238--63782713 Score: 402
Period size: 86 Copynumber: 5.6 Consensus size: 85
63782228 AGCACCAAGG
* * * *
63782238 TGCCGATGGTG-TTCGAGGCTC-CAACACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
1 TGCCGATGGTGCTT-GAGGCTCTC-GCACA-CTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* *
63782300 CCCGCACGACCGAGGTCCTAGGT
63 CCCGCACGACCAAGGGCCTAGGT
* * * * * *
63782323 TGTCGATGGTGC-CGAGGCTCTTGCACAACCAAGGGCCTAGGTTGCCGATGGTACCCGAGGCTCC
1 TGCCGATGGTGCTTGAGGCTCTCGCAC-ACTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
63782387 CGCACGATCAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* *
63782408 TACCGATGGTGCTTGAGGCTCTCGCACGACTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCTTGAGGCTCTCGCAC-ACTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
63782473 CGCACGACCAAGGGACTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * *
63782494 TGCCAATGGTG--TGAGGCTCTCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCTTGAGGCTCTCGCACA-CTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * *
63782556 TGCACAACCAAGGGCCTAGTT
65 CGCACGACCAAGGGCCTAGGT
* * * * *
63782577 TACCGATAGTG-TTCGAGGCTC-C-CACACATCAGAGGCACCAAGG-TGCCGATGCTGCTCGAGG
1 TGCCGATGGTGCTT-GAGGCTCTCGCACAC-T-A-AGG-ACCTAGGTTGCCGATGGTGCCCGAGG
* ** *
63782638 CTCCCGCAC-ATCAGAGCACCAAGG-
61 CTCCCGCACGACCA-AGGGCCTAGGT
* * * * * *
63782662 TGCCGATGTTACTTGAGGCTCTTGCACCACTGACGTCCTAGGTTGCCGATGG
1 TGCCGATGGTGCTTGAGGCTCTCGCA-CACTAAGGACCTAGGTTGCCGATGG
63782714 CATCCAAGGC
Statistics
Matches: 320, Mismatches: 53, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
82 1 0.00
83 52 0.16
84 51 0.16
85 96 0.30
86 114 0.36
87 3 0.01
88 3 0.01
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (85 bp):
TGCCGATGGTGCTTGAGGCTCTCGCACACTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGGCCTAGGT
Found at i:63782680 original size:42 final size:43
Alignment explanation
Indices: 63782589--63782682 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 43
63782579 CCGATAGTGT
*
63782589 TCGAGGCTCCCACACATCAGAGGCACCAAGGTGCCGATGCTGC
1 TCGAGGCTCCCACACATCAGAGGCACCAAGGTGCCGATGCTAC
* *
63782632 TCGAGGCTCCCGCACATCAGA-GCACCAAGGTGCCGATGTTAC
1 TCGAGGCTCCCACACATCAGAGGCACCAAGGTGCCGATGCTAC
*
63782674 TTGAGGCTC
1 TCGAGGCTC
63782683 TTGCACCACT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 27 0.57
43 20 0.43
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.17
Consensus pattern (43 bp):
TCGAGGCTCCCACACATCAGAGGCACCAAGGTGCCGATGCTAC
Found at i:63788024 original size:17 final size:16
Alignment explanation
Indices: 63788002--63788040 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
63787992 GTCACATAGG
*
63788002 TCCACCGGCACCGCATT
1 TCCACCGG-AACGCATT
63788019 TCCACC-GAACGCATT
1 TCCACCGGAACGCATT
63788034 TCCACCG
1 TCCACCG
63788041 AAGAACGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 13 0.65
16 1 0.05
17 6 0.30
ACGTcount: A:0.21, C:0.46, G:0.15, T:0.18
Consensus pattern (16 bp):
TCCACCGGAACGCATT
Found at i:63788033 original size:15 final size:15
Alignment explanation
Indices: 63788013--63788042 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63788003 CCACCGGCAC
63788013 CGCATTTCCACCGAA
1 CGCATTTCCACCGAA
63788028 CGCATTTCCACCGAA
1 CGCATTTCCACCGAA
63788043 GAACGATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.13, T:0.20
Consensus pattern (15 bp):
CGCATTTCCACCGAA
Found at i:63795364 original size:182 final size:183
Alignment explanation
Indices: 63795051--63795605 Score: 811
Period size: 182 Copynumber: 3.0 Consensus size: 183
63795041 ACTTAGTATT
* * * *
63795051 TTTAA-TT-GAAAATTTTTTCTGTTGGCCCAAAAGAAATACAAGAAGTCGAATAAAATATGGCAT
1 TTTAACTTAGAAAATTTTTTCTGTTGGCCCAAAAAAAATACAAGAAGCCGAATGAAGTATGGCAT
* * * *
63795114 -G-ATGGCACGGCAGAAAATTGAACAAGTACCCGGACCACCAACAGTTGGGAGCTCGCACTCGCA
66 GGAACGGCACGGCAGAAAATTGAACAAGTGCCCGGACCACCAACAATTGGGAGCTCGCACCCGCA
* * *
63795177 CCACCACGGCCCCCGTTGTGCCATGTTTCCTGAGGGGGCGGGACGGCCAAGTG
131 CCACCACGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
*
63795230 TTTAACTTAGAAAATTTCTTT-TGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAGTAT-GCA
1 TTTAACTTAGAAAATTT-TTTCTGTTGGCCCAAAAAAAATACAAGAAGCCGAATGAAGTATGGCA
* *
63795293 TGGAACGGCACGGCAGAAAATTGAACAAGTGCCCGGACCACCAACAATTGGGAGATCGCACCCAC
65 TGGAACGGCACGGCAGAAAATTGAACAAGTGCCCGGACCACCAACAATTGGGAGCTCGCACCCGC
*
63795358 ACCACCATGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
130 ACCACCACGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
63795412 TTTAACTTAG-AAATTTTTTCTGTTGGCCCAAAAAAAATACAAGAAGCCGAATGAAGTATGGCAT
1 TTTAACTTAGAAAATTTTTTCTGTTGGCCCAAAAAAAATACAAGAAGCCGAATGAAGTATGGCAT
* *
63795476 GGCATGGCACGGCACGGCAGAAAATTAAACAAGTGCCCAGACCACCAA-AAGTTGGGAGCTCGCA
66 GG-A----ACGGCACGGCAGAAAATTGAACAAGTGCCCGGACCACCAACAA-TTGGGAGCTCGCA
* * *
63795540 CCCGCACCACCACGGCCCCCATTGTGCCATATTTCCCGAGGGGGCGGCAAGGCCAAGTG
125 CCCGCACCACCACGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
63795599 TTTAACT
1 TTTAACT
63795606 AACTCCTTAC
Statistics
Matches: 340, Mismatches: 23, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
179 5 0.01
180 9 0.03
181 88 0.26
182 124 0.36
183 1 0.00
186 2 0.01
187 111 0.33
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.20
Consensus pattern (183 bp):
TTTAACTTAGAAAATTTTTTCTGTTGGCCCAAAAAAAATACAAGAAGCCGAATGAAGTATGGCAT
GGAACGGCACGGCAGAAAATTGAACAAGTGCCCGGACCACCAACAATTGGGAGCTCGCACCCGCA
CCACCACGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
Found at i:63800770 original size:43 final size:43
Alignment explanation
Indices: 63800722--63801572 Score: 724
Period size: 43 Copynumber: 20.0 Consensus size: 43
63800712 AGGCTCTCAT
* * * *
63800722 ACGACCAAGGGCCTAGGTTACCAATGGTGCCCGAGCCTCTCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
63800765 ACGACCAAGGGCCTAGGTTACCGATTGTGCCTGAGGCTCCCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* **
63800808 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAAACTCCCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* ** *
63800851 ACGACCAAGGGCCTAAGTTGCCGATGGTGTTCAAGGCTCCCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
** * * **
63800894 AC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCCTAC
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * * *
63800936 ATGACCAAGGGCCTAGGTTGTCGATGTTGTCCGAGGCTTCCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
** * * *
63800979 AC-ATCCAAGCACCAAGG-TGCCGATAGTGTCCGAGGCTCCCGC
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* ** * * * *
63801021 AC-ATCTAAGCACCAAAG-TACCGATGGTGCTCGAGGCTCCCGC
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * * * *
63801063 ACGACCAAGGACCTAAGTTGCCGATGGTGTCTGAGGCTTCTGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * * * *
63801106 AC-ATCCAAGGGCCTAGGTTGCTGGTGGAGTCTGAGGCTCCAGC
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
63801149 AC-ATCCAAGGGCCTAGATTGCCGATGGTGGCCGAGGCTCCCGC
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
63801192 ACGACCAAGGGCCTAGGTTGCCGATGGT-ACTGAGGCTCTCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
63801234 ACGACCAAGGGCCTAAGTTACCGATGGTG-CTGAGGCTCCCGT
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
63801276 ACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGACTCCCAC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
63801319 ACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGGGGCTCCAGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * **
63801362 ACAACCAAGGGTCTAGGTTACCGATGGTGCCCGAGGCTCATGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
63801405 ACGACTAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCTCGT
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
** * * *
63801447 AC-AGCCAAGTACC-AAGTTTCCAATGGTGCCCGAGGCTCCCGC
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * ** * * *
63801489 A-TATCCTAGCACCAAGG-TGCTGATGGTGCCCGAGGCTCCCGT
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * * * *
63801531 ACAACTAAGGGCCTAGTTTGCCGATAGTGTCTGAGGCTCCCG
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
63801573 AACATCTCTG
Statistics
Matches: 660, Mismatches: 132, Indels: 32
0.80 0.16 0.04
Matches are distributed among these distances:
41 13 0.02
42 247 0.37
43 399 0.60
44 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (43 bp):
ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
Found at i:63800856 original size:86 final size:86
Alignment explanation
Indices: 63800722--63801572 Score: 691
Period size: 85 Copynumber: 10.0 Consensus size: 86
63800712 AGGCTCTCAT
* * * * *
63800722 ACGACCAAGGGCCTAGGTTACCAATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTACC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACC
*
63800787 GATTGTGCCTGAGGCTCCCGC
66 GATGGTGCCTGAGGCTCCCGC
** * *
63800808 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAAACTCCCGCACGACCAAGGGCCTAAGTTGCC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACC
* *
63800873 GATGGTG-TTCAAGGCTCCCGC
66 GATGGTGCCT-GAGGCTCCCGC
** * ** * **
63800894 AC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCCTACATGACCAAGGGCCTAGGTTGT
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTAC
* *
63800957 CGATGTTGTCC-GAGGCTTCCGC
65 CGATGGTG-CCTGAGGCTCCCGC
** * * * ** * *
63800979 AC-ATCCAAGCACCAAGG-TGCCGATAGTG-TCCGAGGCTCCCGCAC-ATCTAAGCACCAAAG-T
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCT-CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
63801039 ACCGATGGTG-CTCGAGGCTCCCGC
63 ACCGATGGTGCCT-GAGGCTCCCGC
* * * * *
63801063 ACGACCAAGGACCTAAGTTGCCGATGGTG-TCTGAGGCTTCTGCAC-ATCCAAGGGCCTAGGTTG
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTC-GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
* * * * *
63801126 CTGGTGGAGTCTGAGGCTCCAGC
64 CCGATGGTGCCTGAGGCTCCCGC
* *
63801149 AC-ATCCAAGGGCCTAGATTGCCGATGGTGGC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGT-GCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
63801212 CCGATGGT-ACTGAGGCTCTCGC
64 CCGATGGTGCCTGAGGCTCCCGC
* * *
63801234 ACGACCAAGGGCCTAAGTTACCGATGGTGCT-GAGGCTCCCGTACGACCAAGGGCCTAGGTTACC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACC
* * *
63801298 GATGGTGCCCGAGACTCCCAC
66 GATGGTGCCTGAGGCTCCCGC
* * * * * *
63801319 ACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGGGGCTCCAGCACAACCAAGGGTCTAGGTTACC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACC
* **
63801384 GATGGTGCCCGAGGCTCATGC
66 GATGGTGCCTGAGGCTCCCGC
* * * ** * *
63801405 ACGACTAAGGGCCTAGGTTGCCGATGGTGC-CGAGGCTCTCGTAC-AGCCAAGTACC-AAGTTTC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTAC
* *
63801467 CAATGGTGCCCGAGGCTCCCGC
65 CGATGGTGCCTGAGGCTCCCGC
* * ** * * * * * * * *
63801489 A-TATCCTAGCACCAAGG-TGCTGATGGTGCCCGAGGCTCCCGTACAACTAAGGGCCTAGTTTGC
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTAC
* *
63801552 CGATAGTGTCTGAGGCTCCCG
65 CGATGGTGCCTGAGGCTCCCG
63801573 AACATCTCTG
Statistics
Matches: 619, Mismatches: 120, Indels: 53
0.78 0.15 0.07
Matches are distributed among these distances:
82 1 0.00
83 12 0.02
84 125 0.20
85 245 0.40
86 231 0.37
87 5 0.01
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (86 bp):
ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACC
GATGGTGCCTGAGGCTCCCGC
Found at i:63801050 original size:127 final size:126
Alignment explanation
Indices: 63800783--63801529 Score: 553
Period size: 127 Copynumber: 5.9 Consensus size: 126
63800773 GGGCCTAGGT
* ** *
63800783 TACCGATTGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CTCGAAACTC
1 TACCGATGGTGCC-GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC-CGAGGCTT
* * * *
63800847 CCGCACGA-CCAAGGGCCTAAGTTGCCGATGGTGTTCAAGGCTCCCGCACATCCAAGCACCAAGG
64 CCGCAC-ATCCAAGGGCC-AAGGTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAAG
* ** * * *
63800911 TGCCGATGGTGCTCGAGGCTCCTACATGACCAAGGGCCTAGGTTGTCGATGTTGTCCGAGGCTTC
1 TACCGATGGTGC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTTC
** * *
63800976 CGCACATCCAAGCACCAAGGTGCCGATAGTGTCCGAGGCTCCCGCACATCTAAGCACCAAAG
65 CGCACATCCAAGGGCCAAGGTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAAG
* * *
63801038 TACCGATGGTGCTCGAGGCTCCCGCACGACCAAGGACCTAAGTTGCCGATGGTGTCTGAGGCTTC
1 TACCGATGGTGC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTTC
* * * * * * * ** * *
63801103 TGCACATCCAAGGGCCTAGGTTGCTGGTGGAGTCTGAGGCTCCAGCACATCCAAGGGCCTAGAT
65 CGCACATCCAAGGGCCAAGG-TGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACC-AAAG
* * *
63801167 TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ACTGAGGC-TC
1 TACCGATGGT-GCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTTC
* * * * ** * *
63801230 TCGCACGA-CCAAGGGCCTAAGTTACCGATGGTG-CTGAGGCTCCCGTACGA-CCAAGGGCCTAG
65 -CGCAC-ATCCAAGGGCC-AAGGTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAA
63801292 G
126 G
* * * * *
63801293 TTACCGATGGTGCCCGAGACTCCCACACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGGGGC-T
1 -TACCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTT
* * * * * ** * ** * *
63801357 CCAGCACAACCAAGGGTCTAGGTTACCGATGGTGCCCGAGGCTCATGCACGA-CTAAGGGCCTAG
64 CC-GCACATCCAAGGGCCAAGG-TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAA
63801421 G
126 G
* * * ** * * * * *
63801422 TTGCCGATGGTGCCGAGGCTCTCGTAC-AGCCAAGTACC-AAGTTTCCAATGGTGCCCGAGGCTC
1 -TACCGATGGTGCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTT
* * ** * *
63801485 CCGCATATCCTAGCACCAAGGTGCTGATGGTGCCCGAGGCTCCCG
64 CCGCACATCCAAGGGCCAAGGTGCCGATGGTGTCCGAGGCTCCCG
63801530 TACAACTAAG
Statistics
Matches: 502, Mismatches: 98, Indels: 40
0.78 0.15 0.06
Matches are distributed among these distances:
126 21 0.04
127 220 0.44
128 169 0.34
129 90 0.18
130 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (126 bp):
TACCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTTCC
GCACATCCAAGGGCCAAGGTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAAG
Found at i:63801282 original size:213 final size:212
Alignment explanation
Indices: 63800726--63801570 Score: 791
Period size: 213 Copynumber: 4.0 Consensus size: 212
63800716 TCTCATACGA
* * * * *
63800726 CCAAGGGCCTAGGTTACCAATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTACCGATT
1 CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * **
63800791 GTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAAACTCCCGCACGAC
66 GT-CC-GAGGCTCCCGCACGACCAAGGGCCTAAGTTACCGATGGTGCTCGAGGCTCCCGCACGAC
* ** *
63800856 CAAGGGCCTAAGTTGCCGATGGTGT-TCAAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATG
129 CAAGGGCCTAAGTTGCCGATGGTGTCT-GAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATG
*
63800919 GTGCTCGAGGCTCC--TACAT
193 GTGCT-GAGGCTCCAGCACAT
** * * * ** *
63800938 GACCAAGGGCCTAGGTTGTCGATGTTGTCCGAGGCTTCCGCAC-ATCCAAGCACCAAGG-TGCCG
1 --CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCG
* ** *
63801001 ATAGTGTCCGAGGCTCCCGCAC-ATCTAAGCACCAAAG-TACCGATGGTGCTCGAGGCTCCCGCA
63 AT-G-GTCCGAGGCTCCCGCACGA-CCAAGGGCCTAAGTTACCGATGGTGCTCGAGGCTCCCGCA
* * * *
63801064 CGACCAAGGACCTAAGTTGCCGATGGTGTCTGAGGCTTCTGCACATCCAAGGGCCTAGGTTGCTG
125 CGACCAAGGGCCTAAGTTGCCGATGGTGTCTGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCG
* *
63801129 GTGGAGTCTGAGGCTCCAGCACAT
190 ATGGTG-CTGAGGCTCCAGCACAT
* * *
63801153 CCAAGGGCCTAGATTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
1 CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * *
63801218 GTACTGAGGCTCTCGCACGACCAAGGGCCTAAGTTACCGATGGTGCT-GAGGCTCCCGTACGACC
66 GT-CCGAGGCTCCCGCACGACCAAGGGCCTAAGTTACCGATGGTGCTCGAGGCTCCCGCACGACC
* * * * * *
63801282 AAGGGCCTAGGTTACCGATGGTGCCCGAGACTCCCACACGAT-CAAGGGCCTAGGTTGCCGATGG
130 AAGGGCCTAAGTTGCCGATGGTGTCTGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGG
* * *
63801346 TGCCCGGGGCTCCAGCACAA
194 TG-CTGAGGCTCCAGCACAT
* ** *
63801366 CCAAGGGTCTAGGTTACCGATGGTGCCCGAGGCTCATGCACGACTAAGGGCCTAGGTTGCCGATG
1 CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * ** * * * *
63801431 GTGCCGAGGCTCTCGTAC-AGCCAAGTACC-AAGTTTCCAATGGTGCCCGAGGCTCCCGCA-TAT
66 GT-CCGAGGCTCCCGCACGA-CCAAGGGCCTAAGTTACCGATGGTGCTCGAGGCTCCCGCACGA-
* ** * * * * * * * * *
63801493 CCTAGCACC-AAGGTGCTGATGGTGCCCGAGGCTCCCGTACAACTAAGGGCCTAGTTTGCCGATA
128 CCAAGGGCCTAAGTTGCCGATGGTGTCTGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATG
63801557 GTGTCTGAGGCTCC
193 GTG-CTGAGGCTCC
63801571 CGAACATCTC
Statistics
Matches: 515, Mismatches: 97, Indels: 40
0.79 0.15 0.06
Matches are distributed among these distances:
211 1 0.00
212 145 0.28
213 292 0.57
214 71 0.14
215 6 0.01
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (212 bp):
CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
GTCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTACCGATGGTGCTCGAGGCTCCCGCACGACCA
AGGGCCTAAGTTGCCGATGGTGTCTGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTG
CTGAGGCTCCAGCACAT
Found at i:63802081 original size:35 final size:35
Alignment explanation
Indices: 63802042--63802113 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
63802032 GTCTAGGATC
* *
63802042 GCATATCTTTAAAGATCCCCTTCCATATTTGCCAA
1 GCATATCTTTAAAGATCACCTTCCATATTTACCAA
* * *
63802077 GCATATCTTTGAAGATTACTTTCCATATTTACCAA
1 GCATATCTTTAAAGATCACCTTCCATATTTACCAA
63802112 GC
1 GC
63802114 TTCGGAGATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.36
Consensus pattern (35 bp):
GCATATCTTTAAAGATCACCTTCCATATTTACCAA
Found at i:63806196 original size:58 final size:58
Alignment explanation
Indices: 63806106--63806221 Score: 162
Period size: 58 Copynumber: 2.0 Consensus size: 58
63806096 AGGAGGGACA
* *
63806106 GGGATGATTCATTCATTGTTGGGCACCGAACATGCAA-TAGTATCCGAATTCTACCTTT
1 GGGATGATTCACTCATTATTGGGCACCGAACATGCAACTA-TATCCGAATTCTACCTTT
* * * *
63806164 GGGATGGTTCACTCATTATTGGGTACCGAACATGTAACTATATCTGAATTCTACCTTT
1 GGGATGATTCACTCATTATTGGGCACCGAACATGCAACTATATCCGAATTCTACCTTT
63806222 TAGGATTGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
58 49 0.96
59 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (58 bp):
GGGATGATTCACTCATTATTGGGCACCGAACATGCAACTATATCCGAATTCTACCTTT
Found at i:63828975 original size:24 final size:22
Alignment explanation
Indices: 63828932--63828979 Score: 78
Period size: 24 Copynumber: 2.1 Consensus size: 22
63828922 GAAAACCAAA
63828932 ACGCTGCTACCGCTACCAGGCG
1 ACGCTGCTACCGCTACCAGGCG
63828954 ACGCTGCTACCAGGCTACCAGGCG
1 ACGCTGCTACC--GCTACCAGGCG
63828978 AC
1 AC
63828980 TAACAGGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 11 0.46
24 13 0.54
ACGTcount: A:0.21, C:0.40, G:0.27, T:0.12
Consensus pattern (22 bp):
ACGCTGCTACCGCTACCAGGCG
Found at i:63829213 original size:43 final size:43
Alignment explanation
Indices: 63829061--63830740 Score: 1400
Period size: 43 Copynumber: 39.5 Consensus size: 43
63829051 CCAAGGTGTT
** * *
63829061 GATGGTGCCCGAGGCTCTAGCACGACCAAGGGCCTAGGTTACT
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
*
63829104 GATGGTGACCGAGGCTCCCGCAC-ATCC-A-GGCACTAAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTTGCC
* * *
63829146 AAAGGTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * * * *
63829189 GATGATGCCCGAGGCTCCCACACGACTAGGGGCCTAAGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * * ** * *
63829232 GATAGTACCCGAGGCTCCCGCACAACCAAGCACCAAGG-GGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
** * *
63829274 GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAATG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* *
63829316 GATGGTG-CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGTC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* ** * *
63829358 GATGGTGCCCGAGGCTTCCGCACGATTAAGGGCCTAGGCTACC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * *
63829401 GATGGTGCTCGAGGCTCCCGCACAACCAAGGGCCTAGGTTACC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
** * ***
63829444 GATGGTGCCTAAGGCTCCCGCATGACCAAGGGCCTAGGTTATT
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* *
63829487 GATGGTGCCAGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * * *
63829530 GATGGTGCCCAAGGCTTCCACACGACCAAGGGCCTAGGTTGTC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* *
63829573 GATGGTGCCCAAGGCTCCCGCATGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * ** * *
63829616 GATGGTGTCCGAGGCTTCCGCAC-ATCCAAGCACCAAGG-TACC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
** * ** * *
63829658 GATGGTGTACGAGGCTCCCGTAC-ATCCAAGCACCAAGG-TACC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* * *
63829700 GATGGTG-CCTAGGCTCTCGCACGACCAAAGGCCCT-GGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACC-AAGGGCCTAGGTTGCC
* * * * * * * *
63829742 GATGGTGCCCGAGGCCCCCACACAATCAACGACCTAGATTACC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * * * * *
63829785 AATGGTGCCCGAGGTTCCCACAGGAGCAATGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * * *
63829828 AATGGTGCTCAAGGCTCCCACACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* *
63829871 GATGGTGCCCGAGGCTCCTGCACGATCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
**
63829914 GATGGTGCTTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* ** *
63829957 GATGGTGCCCAAGGCTCCCGCAC-ATCCAAGCACCAAGGTT-CC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* * ** * * * ** * **
63829999 GATGGTGTCTGAGGAACTCGTAC-ATCTAAGCACCAAGG-TGTT
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* * * *
63830041 GATGGTG-CCGTGGCTCTCACACGAACAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* ** *
63830083 GATGGTGCCCGAGGCTCCCGCAC-ATCTAAGCACCAAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* * * * *
63830125 GATGGTGTCTGAGGCTCCCGCAC-ATCCAA-GTCCAAGG-TACC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
** * *
63830166 GGCGGTG-CCGAGGCTCTCC-TACGACCAAGGGCCTAGGTTGCA
1 GATGGTGCCCGAGGCTC-CCGCACGACCAAGGGCCTAGGTTGCC
* * **
63830208 GATGGCGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTTTC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * *
63830251 GATGGTGCCCGAGGTTCCCGCATGACCAAGGGCCTAGGTTACC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * *
63830294 GATGGTGCCCGAGGCTCCCGTACGATCAAAGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* *** *
63830337 GATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCAACGAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* * ** *
63830379 GATGGTGTCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* * * *
63830421 GATGGTG-TCGAGGCTCTCGCACGACCAAGTGTCTAGGTT-CC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* *
63830462 TGATTGTGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCC
1 -GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * * * * *
63830506 AATGGTACCTGAGGCTCCCGTACGATCAAGGGCCTGGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * *
63830549 GATGGTGCCCGAGGCTCCTGTACGACCAAGAGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * * ** *
63830592 GATGGTG-CCGAGGATCTCGCA-TATCCAAGCACCAAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* * ** *
63830633 GATGGTGCCCAAGGCTCCCGCA-TATCCAAGCACC-AGGGTGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* * * * * *
63830675 GATGGTGCCCCAGGCTCTCGGACAACTAAGGGCCTAGTTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
*
63830718 GATGGTGTCCGAGGCTCCCGCAC
1 GATGGTGCCCGAGGCTCCCGCAC
63830741 ATGCAAGGCC
Statistics
Matches: 1335, Mismatches: 262, Indels: 80
0.80 0.16 0.05
Matches are distributed among these distances:
40 14 0.01
41 121 0.09
42 380 0.28
43 815 0.61
44 5 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
Found at i:63829723 original size:341 final size:340
Alignment explanation
Indices: 63829061--63830691 Score: 1604
Period size: 341 Copynumber: 4.8 Consensus size: 340
63829051 CCAAGGTGTT
** * * * *
63829061 GATGGTGCCCGAGGCTCTAGCACGACCAAGGGCCTAGGTTACTGATGGTGACCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGACCTAGGTTACCGATGGTGCCCGAGGCTCCCGCA
* * * * *
63829126 CATCC-A-GGCACTAAGG-TGCCAAAGGTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTTGC
66 GA-CCAAGGGC-CT-AGGTTACCAATGGTGCCAGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * * * *
63829188 CGATGATGCCCGAGGCTCCCACACGACTAGGGGCCTAAGTTGCCGATAGTACCCGAGGCTCCCGC
128 CGATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
** ** * * *
63829253 ACAACCAAGCACCAAGG-GGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAATGTGCCG
193 ATGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCG
* ** * * *
63829317 ATGGTG-CCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGTCGATGGTGCCCGAGGCT-TCCGC
258 ATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTG-CCTAGGCTCT-CGC
* * *
63829379 ACGATTAAGGGCCTAGGCTACC
319 ACGATCAAGGGCCTAGGTTGCC
* * **
63829401 GATGGTGCTCGAGGCTCCCGCACAACCAAGGGCCTAGGTTACCGATGGTGCCTAAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGACCTAGGTTACCGATGGTGCCCGAGGCTCCCGCA
*** *
63829466 TGACCAAGGGCCTAGGTTATTGATGGTGCCAGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCG
66 -GACCAAGGGCCTAGGTTACCAATGGTGCCAGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCG
* * * *
63829531 ATGGTGCCCAAGGCTTCCACACGACCAAGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCCCGCAT
130 ATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAT
* * *
63829596 GACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCACATCCAAGCACCAAGGTACCGAT
195 GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGAT
* * * *
63829661 GGTGTACGAGGCTCCCGTACATCCAAGCACCAAGGTACCGATGGTGCCTAGGCTCTCGCACGACC
260 GGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCTAGGCTCTCGCACGATC
*
63829726 AAAGGCCCT-GGTTGCC
325 -AAGGGCCTAGGTTGCC
* * * * * * * *
63829742 GATGGTGCCCGAGGCCCCCACACAATCAACGACCTAGATTACCAATGGTGCCCGAGGTTCCCACA
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGACCTAGGTTACCGATGGTGCCCGAGGCTCCCGCA
* * * *
63829807 GGAGCAATGGCCTAGGTTGCCAATGGTGCTCA-AGGCTCCCACACGACCAAGGGCCTAGGTTGCC
66 -GACCAAGGGCCTAGGTTACCAATGGTGC-CAGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* **
63829871 GATGGTGCCCGAGGC-TCCTGCACGATCAAGGGCCTAGGTTGCCGATGGTGCTTGAGGCTCCCGC
129 GATGGTGCCCGAGGCTTCC-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
63829935 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTTCCG
193 ATGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCG
* ** * * * ** *
63830000 ATGGTGTCTGAGGAACTCGTACATCTAAGCACCAAGGTGTTGATGGTGCCGT-GGCTCTCACACG
258 ATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC-TAGGCTCTCGCACG
*
63830064 AACAAGGGCCTAGGTTGCC
322 ATCAAGGGCCTAGGTTGCC
* * * * * * *
63830083 GATGGTGCCCGAGGCTCCCGCACATCTAAGCACCAAGG-TGCCGATGGTGTCTGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGACCTAGGTTACCGATGGTGCCCGAGGCTCCCGCA
* * * *** * *
63830147 CATCCAA-GTCCAAGG-TACCGGCGGTGCC-GAGGCTCTCC-TACGACCAAGGGCCTAGGTTGCA
66 GA-CCAAGGGCCTAGGTTACCAATGGTGCCAGAGGCTC-CCGCACGACCAAGGGCCTAGGTTGCC
* * * ** *
63830208 GATGGCGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTTTCGATGGTGCCCGAGGTTCCCGCA
129 GATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
* * * * *
63830273 TGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGTACGATCAAAG-GCCTAGGTTGCC
194 TGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCC
* * * *
63830337 GATGGTGTCCGAGGCTCCCGCACATCCAAGCAACGAGGTGCCGATGGTGTCTGAGGCTCCCGCAC
257 GATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCT-AGGCTCTCGCAC
** *
63830402 -ATCCAAGCACCAAGG-TGCC
321 GAT-CAAGGGCCTAGGTTGCC
* * * * *
63830421 GATGGTG-TCGAGGCTCTCGCACGACCAAGTG-TCTAGGTT-CCTGATTGTGCCCGAGGCTCCCG
1 GATGGTGCCCGAGGCTCCCGCACAACCAAG-GACCTAGGTTACC-GATGGTGCCCGAGGCTCCCG
* * * * * * *
63830483 CACGATCAAGGGCCTAGGTTGCCAATGGTACCTGAGGCTCCCGTACGATCAAGGGCCTGGGTTGC
64 CA-GACCAAGGGCCTAGGTTACCAATGGTGCCAGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
63830548 CGATGGTGCCCGAGGC-TCCTGTACGACCAAGAGCCTAGGTTGCCGATGGTG-CCGAGGATCTCG
128 CGATGGTGCCCGAGGCTTCC-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
** * * * *
63830611 CAT-ATCCAAGCACCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCATATCCAAGCACCAGGGTGC
192 CATGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGC
* *
63830674 CGATGGTGCCCCAGGCTC
256 CGATGGTGTCCGAGGCTC
63830692 TCGGACAACT
Statistics
Matches: 1060, Mismatches: 198, Indels: 68
0.80 0.15 0.05
Matches are distributed among these distances:
337 152 0.14
338 121 0.11
339 60 0.06
340 130 0.12
341 503 0.47
342 72 0.07
343 22 0.02
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (340 bp):
GATGGTGCCCGAGGCTCCCGCACAACCAAGGACCTAGGTTACCGATGGTGCCCGAGGCTCCCGCA
GACCAAGGGCCTAGGTTACCAATGGTGCCAGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
TGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATG
ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATG
GTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCTAGGCTCTCGCACGATCA
AGGGCCTAGGTTGCC
Found at i:63830708 original size:212 final size:213
Alignment explanation
Indices: 63829061--63830777 Score: 1323
Period size: 212 Copynumber: 8.1 Consensus size: 213
63829051 CCAAGGTGTT
** * * * *
63829061 GATGGTGCCCGAGGCTCTAGCACGACCAAGGGCCTAGGTTACTGATGGTGACCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
* * * *
63829126 CATCCAGGCACTAAGGTGCCAAAGGTGCCCGAGGCTCCCGCACGACCAATG-GCCTAGGTTGCCG
66 CATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GCGCC-AGGTTGCCG
* * * * * * * *
63829190 ATGATGCCCGAGGCTCCCACACGACTAGGGGCCTAAGTTGCCGATAGTACCCGAGGCTCCCGCAC
129 ATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * ** * *
63829255 AACCAAGCACCAAGG-GGCC
194 GATCAAGGGCCTAGGTTGCC
* * *
63829274 GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA-CCAATG-TGCCGATGGTG-CCGAGGCTCTCG
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAG-AGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
** * * * ** * * *
63829335 CACGA-CCAAGGGCCTAGGTTGTCGATGGTGCCCGAGGCTTCCGCACGATTAAGGGCCTAGGCTA
64 CAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCC-AGGTTG
* * **
63829399 CCGATGGTGCTCGAGGCTCCCGCACAACCAAGGGCCTAGGTTACCGATGGTGCCTAAGGCTCCCG
126 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* * ***
63829464 CATGACCAAGGGCCTAGGTTATT
191 CACGATCAAGGGCCTAGGTTGCC
* * * * * *
63829487 GATGGTGCCAGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTTCCACA
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
** * * * * *
63829552 CGA-CCAAGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCCCGCATGACCAAGGGCCTAGGTTGCC
66 C-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCC-AGGTTGCC
* * * ** * * ** *
63829616 GATGGTGTCCGAGGCTTCCGCACATCCAAGCACCAAGG-TACCGATGGTGTACGAGGCTCCCGTA
128 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
** * *
63829680 C-ATCCAAGCACCAAGG-TACC
193 CGAT-CAAGGGCCTAGGTTGCC
* * * *
63829700 GATGGTG-CCTAGGCTCTCGCACGACCAA-AGGCCCT-GGTTGCCGATGGTGCCCGAGGCCCCCA
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGA-G-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* * * * * * * *
63829762 CACAAT-CAA-CGACCTAGATTACCAATGGTGCCCGAGGTTCCCACAGGAGCAATG-GCCTAGGT
64 CAC-ATCCAAGC-ACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GCGCC-AGGT
* * * * *
63829824 TGCCAATGGTGCTCAAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
124 TGCCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
63829889 TGCACGATCAAGGGCCTAGGTTGCC
189 CGCACGATCAAGGGCCTAGGTTGCC
** * *
63829914 GATGGTGCTTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
* * * ** * * * * **
63829979 CATCCAAGCACCAAGGTTCCGATGGTGTCTGAGGAACTCGTAC-ATCTAAGCACCAAGG-TGTTG
66 CATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCGCC-AGGTTGCCG
* * *
63830042 ATGGTG-CCGTGGCTCTCACACGAA-CAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
129 ATGGTGCCCGAGGCTCCCGCAC-AACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
** *
63830105 C-ATCTAAGCACCAAGG-TGCC
193 CGATC-AAGGGCCTAGGTTGCC
* * * * * **
63830125 GATGGTGTCTGAGGCTCCCGCAC-ATCCAAG-TCCAAGG-TACCGGCGGTG-CCGAGGCTCTCC-
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTC-CCG
* ** * * * * * *
63830185 TACGA-CCAAGGGCCTAGGTTGCAGATGGCGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTT
64 CAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCC-AGGTTG
* * ** *
63830249 TCGATGGTGCCCGAGGTTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCG
126 CCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* *
63830314 TACGATCAAAGGCCTAGGTTGCC
191 CACGATCAAGGGCCTAGGTTGCC
* * * * *
63830337 GATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA-ACGAGG-TGCCGATGGTGTCTGAGGCTCCCG
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAG-AGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* * * *
63830399 CACATCCAAGCACCAAGGTGCCGATGGTG-TCGAGGCTCTCGCACGACCAAGTGTCTAGGTT-CC
64 CACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCG-CCAGGTTGCC
* * * * * * *
63830462 TGATTGTGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCAATGGTACCTGAGGCTCCCGT
128 -GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
*
63830527 ACGATCAAGGGCCTGGGTTGCC
192 ACGATCAAGGGCCTAGGTTGCC
* * * *
63830549 GATGGTGCCCGAGGCTCCTGTACGACCAAGAGCCTAGGTTGCCGATGGTG-CCGAGGATCTCGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
* * * * *
63830613 TATCCAAGCACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCA-TATCCAAGCACCAGGGTGCCGA
66 CATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCAGGTTGCCGA
* * * * * *
63830677 TGGTGCCCCAGGCTCTCGGACAACTAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-
130 TGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
*
63830741 ATGCAAGGCCCTAAGG-TGCC
195 AT-CAAGGGCCT-AGGTTGCC
* * *
63830761 AATGCTGCTCGAGGCTC
1 GATGGTGCCCGAGGCTC
63830778 TCACACATCT
Statistics
Matches: 1193, Mismatches: 257, Indels: 109
0.77 0.16 0.07
Matches are distributed among these distances:
208 20 0.02
209 37 0.03
210 17 0.01
211 115 0.10
212 576 0.48
213 173 0.15
214 103 0.09
215 151 0.13
216 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (213 bp):
GATGGTGCCCGAGGCTCCCGCACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
CATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAGGTTGCCGAT
GGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
TCAAGGGCCTAGGTTGCC
Found at i:63830777 original size:255 final size:255
Alignment explanation
Indices: 63829104--63830777 Score: 1435
Period size: 255 Copynumber: 6.6 Consensus size: 255
63829094 CTAGGTTACT
* * * * * *
63829104 GATGGTGACCGAGGCTCCCGCACATCCAGGCACTAAGGTGCCAAAGGTGCCCGAGGCTCCCGCAC
1 GATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCTCTCGCAC
* * * * * *
63829169 GACCAATGGCCTAGGTTGCCGATGATGCCCGAGGCTCCCACACGA-CTAGGGGCCTAAGTTGCCG
65 GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATC-AAGGCCCTAGGTTGCCG
* * * * ** * * *
63829233 ATAGTACCCGAGGCTCCCGCACAACCAAGCACCAAGG-GGCCGATGGTGCCCGAGGCTCCCGCAC
129 ATGGTGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACAC
* * * ** * *
63829297 -ATCCAAGCA-CCAATG-TGCCGATGGTG-CCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGT
194 GA-CCAAG-AGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGC
63829357 C
255 C
* * * ** * * *
63829358 GATGGTGCCCGAGGCTTCCGCACGAT-TAAGGGCCTAGGCTACCGATGGTGCTCGAGGCTCCCGC
1 GATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGC-CGAGGCTCTCGC
* * ** * * * ***
63829422 ACAACCAAGGGCCTAGGTTACCGATGGTGCCTAAGGCTCCCGCATGACCAAGGGCCTAGGTTATT
63 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCAAGGCCCTAGGTTGCC
* * *
63829487 GATGGTGCCAGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTTCCACA
128 GATGGTGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACA
* * * * ** *
63829552 CGACCAAGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCCCGCATGA-CCAAGGGCCTAGGTTGCC
193 CGACCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CATCCAAGCACCAAGG-TGCC
* * * * *
63829616 GATGGTGTCCGAGGCTTCCGCACATCCAAGCACCAAGGTACCGATGGTGTACGAGGCTCCCGTAC
1 GATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCTCTCGCAC
** * * * * *
63829681 -ATCCAAGCACCAAGG-TACCGATGGTG-CCTAGGCTCTCGCACGACCAAAGGCCCT-GGTTGCC
65 GA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATC-AAGGCCCTAGGTTGCC
* * * * * * * * *
63829742 GATGGTGCCCGAGGCCCCCACACAATCAACGACCTAGATTACCAATGGTGCCCGAGGTTCCCACA
128 GATGGTGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACA
* * * * * * ** *
63829807 GGAGCAATG-GCCTAGGTTGCCAATGGTGCTCAAGGCTCCCACACGA-CCAAGGGCCTAGGTTGC
193 CGACCAA-GAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGC
63829870 C
255 C
* * ** * * *
63829871 GATGGTGCCCGAGGCTCCTGCACGAT-CAAGGGCCTAGGTTGCCGATGGTGCTTGAGGCTCCCGC
1 GATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGC-CGAGGCTCTCGC
* *
63829935 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCAA-GCACCAAGGTT-
63 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAT-CAAGGC-CCTAGGTTG
* * ** * * ** * ** * *
63829997 CCGATGGTGTCTGAGGAACTCGTAC-ATCTAAGCACCAAGG-TGTTGATGGTG-CCGTGGCTCTC
126 CCGATGGTGCCCGAGGCTCCCGCACGATC-AAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
63830059 ACACGAACAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCTAAGCACCAAGGTGC
190 ACACGACCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGC
63830124 C
255 C
* * * **
63830125 GATGGTGTCTGAGGCTCCCGCACATCCAAG-TCCAAGGTACCGGCGGTGCCGAGGCTCTC-CTAC
1 GATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCTCTCGC-AC
* * * **
63830188 GACCAAGGGCCTAGGTTGCAGATGGCGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTTTCGA
65 GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCAAGGCCCTAGGTTGCCGA
* * * * **
63830253 TGGTGCCCGAGGTTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGTACG
130 TGGTGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACG
* * * *
63830318 ATCAA-AGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCAACGAGGTGCC
195 ACCAAGA-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCC
* *
63830379 GATGGTGTCTGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGTCGAGGCTCTCGCACG
1 GATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCTCTCGCACG
* * * * *
63830444 ACCAAGTGTCTAGGTT-CCTGATTGTGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCAA
66 ACCAAGGGCCTAGGTTGCC-GATGGTGCCCGAGGCTCCCGCACGATCAAGGCCCTAGGTTGCCGA
* * * * ***
63830508 TGGTACCTGAGGCTCCCGTACGATCAAGGGCCTGGGTTGCCGATGGTGCCCGAGGCTCCTGTACG
130 TGGTGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACG
* * *
63830573 ACCAAGAGCCTAGGTTGCCGATGGTG-CCGAGGATCTCGCATATCCAAGCACCAAGGTGCC
195 ACCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCC
* * * * * *
63830633 GATGGTGCCCAAGGCTCCCGCATATCCAAGCACCAGGGTGCCGATGGTGCCCCAGGCTCTCGGAC
1 GATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCTCTCGCAC
* * * *
63830698 AACTAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATGCAAGGCCCTAAGG-TGCC
65 GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAT-CAAGGCCCT-AGGTTGCC
* * *
63830761 AATGCTGCTCGAGGCTC
128 GATGGTGCCCGAGGCTC
63830778 TCACACATCT
Statistics
Matches: 1160, Mismatches: 215, Indels: 89
0.79 0.15 0.06
Matches are distributed among these distances:
250 1 0.00
251 60 0.05
252 37 0.03
253 17 0.01
254 230 0.20
255 543 0.47
256 106 0.09
257 88 0.08
258 78 0.07
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (255 bp):
GATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCTCTCGCACG
ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCAAGGCCCTAGGTTGCCGAT
GGTGCCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCACACGA
CCAAGAGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCC
Found at i:63830863 original size:42 final size:43
Alignment explanation
Indices: 63830588--63830865 Score: 192
Period size: 43 Copynumber: 6.6 Consensus size: 43
63830578 GAGCCTAGGT
* * * * *
63830588 TGCCGATGGTGC-CGAGGATCTCGCATATCC-AAGCACCAAGG
1 TGCCGATGCTGCTCGAGGCTCTCGCACATCCGAGGCACTAAGG
* * * * * * * *
63830629 TGCCGATGGTGCCCAAGGCTCCCGCATATCC-AAGCACCAGGG
1 TGCCGATGCTGCTCGAGGCTCTCGCACATCCGAGGCACTAAGG
* * * * * ** *
63830671 TGCCGATGGTGCCCCAGGCTCTCGGACAACTAAGGGC-CT-AGTT
1 TGCCGATGCTGCTCGAGGCTCTCGCACATCCGA-GGCACTAAG-G
* * * * *
63830714 TGCCGATGGTG-TCCGAGGCTCCCGCACATGCAAGGCCCTAAGG
1 TGCCGATGCTGCT-CGAGGCTCTCGCACATCCGAGGCACTAAGG
* * * *
63830757 TGCCAATGCTGCTCGAGGCTCTCACACATCTGAGGCACCAAGG
1 TGCCGATGCTGCTCGAGGCTCTCGCACATCCGAGGCACTAAGG
*
63830800 TACCGATGCTGCTCGAGGCTCTCGCACATCCGA-GCACTAAGG
1 TGCCGATGCTGCTCGAGGCTCTCGCACATCCGAGGCACTAAGG
*
63830842 TGTCGATGCTGCTCGAGGCTCTCG
1 TGCCGATGCTGCTCGAGGCTCTCG
63830866 GACCACCGAC
Statistics
Matches: 191, Mismatches: 38, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
41 12 0.06
42 84 0.44
43 90 0.47
44 5 0.03
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (43 bp):
TGCCGATGCTGCTCGAGGCTCTCGCACATCCGAGGCACTAAGG
Found at i:63830891 original size:85 final size:85
Alignment explanation
Indices: 63829860--63830893 Score: 282
Period size: 86 Copynumber: 12.2 Consensus size: 85
63829850 CGACCAAGGG
* * *
63829860 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGAT-CAAGGGC-CT-AGGTTGCCGATGGTGC
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCAC-ATCCAA--GCACTAAGG-TGCCGATGCTGC
* * * * ** *
63829922 TTGAGGCTCCCGCACGACCAAGGG
62 TCGAGGCTCTCGGACCACTGAGGA
* * * * *
63829946 CCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTTCCGATGGTG-TCTG
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACTAAGGTGCCGATGCTGCTC-G
** * * *
63830010 AGGAACTCGTA-CATCTAAGCA
65 AGGCTCTCGGACCA-CTGAGGA
* ** * * * * *
63830031 CCAAGG-TGTTGATGGTGC-CGTGGCTCTCACACGA-ACAAGGGC-CT-AGGTTGCCGATGGTGC
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCAC-ATCCAA--GCACTAAGG-TGCCGATGCTGC
* * * * *
63830091 CCGAGGCTCCCGCA-CATCTAAGCA
62 TCGAGGCTCTCGGACCA-CTGAGGA
* * ** *
63830115 CCAAGG-TGCCGATGGTG-TCTGAGGCTCCCGCACATCCAAGTC-C-AAGGTACCGGCGGTGC-C
1 CCTAGGTTGCCGATGGTGCTC-GAGGCTCCCGCACATCCAAG-CACTAAGGTGCCGATGCTGCTC
** * ** *
63830175 GAGGCTCTCCTACGACCAAGGG
64 GAGGCTCTCGGACCACTGAGGA
* * * ** *
63830197 CCTAGGTTGCAGATGGCGCCCGAGGCTCCCGCACGAT-CAAGGGC-CT-AGGTTTTCGATGGTGC
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCAC-ATCCAA--GCACTAAGG-TGCCGATGCTGC
* * * * ** ** *
63830259 CCGAGGTTCCCGCATGACCAAGGG
62 TCGAGGCTCTCGGACCACTGAGGA
* * * * *
63830283 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGTACGATCAAAGGC-CT-AGGTTGCCGATGGTG-T
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCAC-ATCCAA-GCACTAAGG-TGCCGATGCTGCT
* * ** *
63830345 CCGAGGCTCCCGCA-CATCCAAGCA
63 -CGAGGCTCTCGGACCA-CTGAGGA
* * * *
63830369 ACGAGG-TGCCGATGGTG-TCTGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG-TCG
1 CCTAGGTTGCCGATGGTGCTC-GAGGCTCCCGCACATCCAAGCACTAAGGTGCCGATGCTGCTCG
* * **
63830431 AGGCTCTCGCACGACCAAGTG-
65 AGGCTCTCGGACCACTGAG-GA
* * * * * *
63830452 TCTAGGTT-CCTGATTGTGCCCGAGGCTCCCGCACGAT-CAAGGGC-CT-AGGTTGCCAATGGTA
1 CCTAGGTTGCC-GATGGTGCTCGAGGCTCCCGCAC-ATCCAA--GCACTAAGG-TGCCGATGCTG
* * * * *
63830513 C-CTGAGGCTCCCGTACGA-TCAAGGG
61 CTC-GAGGCTCTCGGACCACT-GAGGA
* * * * *
63830538 CCTGGGTTGCCGATGGTGCCCGAGGCTCCTGTACGA-CCAAG-AGCCT-AGGTTGCCGATGGTGC
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCA--CTAAGG-TGCCGATGCTGC
* * * ** *
63830600 -CGAGGATCTCGCA-TATCCAAGCA
62 TCGAGGCTCTCGGACCA-CTGAGGA
* * * * * * * * *
63830623 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCATATCCAAGCACCAGGGTGCCGATGGTGCCCCA
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACTAAGGTGCCGATGCTGCTCGA
* * *
63830687 GGCTCTCGGACAACTAAGGG
66 GGCTCTCGGACCACTGAGGA
* * * *
63830707 CCTAGTTTGCCGATGGTG-TCCGAGGCTCCCGCACATGCAAGGCCCTAAGGTGCCAATGCTGCTC
1 CCTAGGTTGCCGATGGTGCT-CGAGGCTCCCGCACATCCAA-GCACTAAGGTGCCGATGCTGCTC
63830771 GAGGCTCTC--ACACATCTGAGGCA
64 GAGGCTCTCGGAC-CA-CTGAGG-A
* * * * * *
63830794 CCAAGG-TACCGATGCTGCTCGAGGCTCTCGCACATCCGAGCACTAAGGTGTCGATGCTGCTCGA
1 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACTAAGGTGCCGATGCTGCTCGA
* * *
63830858 GGCTCTCGGACCACCGACGT
66 GGCTCTCGGACCACTGAGGA
63830878 CCTAGGTTGCCGATGG
1 CCTAGGTTGCCGATGG
63830894 CATCCAAGGC
Statistics
Matches: 733, Mismatches: 150, Indels: 131
0.72 0.15 0.13
Matches are distributed among these distances:
82 19 0.03
83 91 0.12
84 177 0.24
85 183 0.25
86 252 0.34
87 11 0.02
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (85 bp):
CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACTAAGGTGCCGATGCTGCTCGA
GGCTCTCGGACCACTGAGGA
Found at i:63835337 original size:20 final size:20
Alignment explanation
Indices: 63835314--63835355 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
63835304 ACGAGAAGTT
63835314 GCTTCAAATCACGAACTGTC
1 GCTTCAAATCACGAACTGTC
63835334 GCTTCAAATCACGAACTGTC
1 GCTTCAAATCACGAACTGTC
63835354 GC
1 GC
63835356 AGGGTTCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (20 bp):
GCTTCAAATCACGAACTGTC
Found at i:63837787 original size:58 final size:58
Alignment explanation
Indices: 63837715--63837830 Score: 169
Period size: 58 Copynumber: 2.0 Consensus size: 58
63837705 GGGGAGGACA
* * * *
63837715 GGGACGATTTATTCATTGTTGGGTACCGAACATGCAACGGAATCCGAATTCTACCTTT
1 GGGACGATTCATTCATTATTGGGCACCGAACATGCAACGGAATCCGAACTCTACCTTT
* * *
63837773 GGGACGCTTCATTCATTATTGGGCACCGAACATGTAACGGTATCCGAACTCTACCTTT
1 GGGACGATTCATTCATTATTGGGCACCGAACATGCAACGGAATCCGAACTCTACCTTT
63837831 TTGGATTGGA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (58 bp):
GGGACGATTCATTCATTATTGGGCACCGAACATGCAACGGAATCCGAACTCTACCTTT
Found at i:63838588 original size:182 final size:180
Alignment explanation
Indices: 63838276--63838815 Score: 773
Period size: 181 Copynumber: 3.0 Consensus size: 180
63838266 TTTTAGCTGA
* * * *
63838276 AAATTTTTTCTATTGGCCCAAAAGAAATACAATAAGCCGAATGAAATATGGCAT-G-ATGGCACG
1 AAATTTTTTCTATTGGCCCAAAACAAATAAAAGAAGCCGAATGAAGTATGGCATGGCATGGCACG
* * * *
63838339 AAAGAAAATTGAACAAGTGCCCGAACCACCAACAGTTGGGAGCTTGCACCCCCACCACCACGGCC
66 GAAGAAAATTGAACAAGTG-CCGGACCACCAACAGTTGGGAGCTCGCA-CCACACCACCACGGCC
*
63838404 CCCATTGTGCCATGTTTCCTGAGGGGGCGGCACGGCCAAGTGTTTAACTTAG
129 CCCGTTGTGCCATGTTTCCTGAGGGGGCGGCACGGCCAAGTGTTTAACTTAG
* *
63838456 AAATTTTTTCTGTTGGCCCCAAAA-AAATAAAAGAATCCGAATGAAGTATGGCATGGCATGGCAC
1 AAATTTTTTCTATTGG-CCCAAAACAAATAAAAGAAGCCGAATGAAGTATGGCATGGCATGGCAC
* * * *
63838520 GGTAGAAAATTGAACAAGTGCTCGGACCGCCAACAGTTAGGAGCTCGCACCAGCACCACCATGGC
65 GGAAGAAAATTGAACAAGTGC-CGGACCACCAACAGTTGGGAGCTCGCACCA-CACCACCACGGC
* *
63838585 CCCCGTTGTACCATGTTTCCTG-GGGGGCAGCACGGCCAAGTGTTTAACTTAG
128 CCCCGTTGTGCCATGTTTCCTGAGGGGGCGGCACGGCCAAGTGTTTAACTTAG
*
63838637 AAATTTTTTCTATTGGCCCAAAACAAATAAAAGAAGCCGAATGAAGTATGGCATGGCACGGCACG
1 AAATTTTTTCTATTGGCCCAAAACAAATAAAAGAAGCCGAATGAAGTATGGCATGGCATGGCACG
* *
63838702 GCAGAAAATTAAACAAGTGCCGGGACCACCAACAGTTGGGAGCTCGCACCCACACCACCACGGCC
66 GAAGAAAATTGAACAAGTGCC-GGACCACCAACAGTTGGGAGCTCGCA-CCACACCACCACGGCC
* * * *
63838767 CCCGTTGTGCCATATTTTCTGAGGGAGTGGCACGGCCAAGTGTTTAACT
129 CCCGTTGTGCCATGTTTCCTGAGGGGGCGGCACGGCCAAGTGTTTAACT
63838816 AACTTCTTAC
Statistics
Matches: 321, Mismatches: 30, Indels: 16
0.87 0.08 0.04
Matches are distributed among these distances:
180 49 0.15
181 166 0.52
182 106 0.33
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (180 bp):
AAATTTTTTCTATTGGCCCAAAACAAATAAAAGAAGCCGAATGAAGTATGGCATGGCATGGCACG
GAAGAAAATTGAACAAGTGCCGGACCACCAACAGTTGGGAGCTCGCACCACACCACCACGGCCCC
CGTTGTGCCATGTTTCCTGAGGGGGCGGCACGGCCAAGTGTTTAACTTAG
Found at i:63844376 original size:27 final size:27
Alignment explanation
Indices: 63844322--63844432 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
63844312 AGCATGGCTG
* *
63844322 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
63844348 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
63844375 CCAGAACAGAT-ATATGTGGCAGAACCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * * *
63844402 CCATATCAGATAGTTGTCGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
63844429 CCAG
1 CCAG
63844433 GATGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 56 0.78
28 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:63844412 original size:54 final size:53
Alignment explanation
Indices: 63844322--63844432 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 53
63844312 AGCATGGCTG
** *
63844322 CCAGAACAGATAATGTGACAGAGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAACCACCAGAACAGATAATTGTCGCAGAGCCA
* * * * *
63844375 CCAGAACAGATATATGTGGCAGAACCACCATATCAGATAGTTGTCGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAACCACCAGAACAGATAATTGTCGCAGAGCCA
63844429 CCAG
1 CCAG
63844433 GATGCTTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 12 0.24
54 37 0.76
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAACCACCAGAACAGATAATTGTCGCAGAGCCA
Found at i:63845860 original size:25 final size:24
Alignment explanation
Indices: 63845832--63845883 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 24
63845822 TTGCTCTTTG
63845832 ATCAGCTCCTAAATCTTCTCCCCTT
1 ATCAGCTCCTAAATCTTCT-CCCTT
63845857 ATCAGCTCCTAAATCTTCTCCCTT
1 ATCAGCTCCTAAATCTTCTCCCTT
63845881 ATC
1 ATC
63845884 CCTTCCTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.37
Consensus pattern (24 bp):
ATCAGCTCCTAAATCTTCTCCCTT
Found at i:63851730 original size:10 final size:10
Alignment explanation
Indices: 63851715--63851739 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
63851705 AATGTATTTT
63851715 TATATTTATA
1 TATATTTATA
63851725 TATATTTATA
1 TATATTTATA
63851735 TATAT
1 TATAT
63851740 AATAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TATATTTATA
Found at i:63853315 original size:27 final size:27
Alignment explanation
Indices: 63853285--63853462 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63853275 ATATTAAGTC
* * *
63853285 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
63853312 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
63853340 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
63853367 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
63853394 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
63853421 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
63853448 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63853463 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:63853369 original size:55 final size:54
Alignment explanation
Indices: 63853285--63853462 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
63853275 ATATTAAGTC
* * *
63853285 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
63853340 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
63853394 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
63853448 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63853463 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:63853451 original size:81 final size:82
Alignment explanation
Indices: 63853306--63853461 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
63853296 TGCTATATAA
* *
63853306 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
63853371 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
63853388 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
63853451 ACACTTAGTGC
65 ACACTTAGTGC
63853462 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:63855687 original size:78 final size:79
Alignment explanation
Indices: 63855599--63855749 Score: 277
Period size: 79 Copynumber: 1.9 Consensus size: 79
63855589 GTTATAGATT
* *
63855599 AGTGTTTTATGG-TTTTTTAGGGTTTAGAATTTTAAGACTATATGACTTTTAGCGGCTTTTTACC
1 AGTGTTTTATGGTTTTTTTAGGGTTTAGAATTTTAAGACTATATGAATTTTAGCGGCGTTTTACC
63855663 AAAAGCGCTGCTAA
66 AAAAGCGCTGCTAA
63855677 AGTGTTTTATGGTTTTTTTAGGGTTTAGAATTTTAAGACTATATGAATTTTAGCGGCGTTTTACC
1 AGTGTTTTATGGTTTTTTTAGGGTTTAGAATTTTAAGACTATATGAATTTTAGCGGCGTTTTACC
63855742 AAAAGCGC
66 AAAAGCGC
63855750 CGCAATGCTC
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
78 12 0.17
79 58 0.83
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (79 bp):
AGTGTTTTATGGTTTTTTTAGGGTTTAGAATTTTAAGACTATATGAATTTTAGCGGCGTTTTACC
AAAAGCGCTGCTAA
Found at i:63855810 original size:41 final size:41
Alignment explanation
Indices: 63855725--63855874 Score: 225
Period size: 40 Copynumber: 3.7 Consensus size: 41
63855715 CTATATGAAT
63855725 TTTAGCGGCGTTTTACCAAAAGCGCCGC-AATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* *
63855765 TTTAGCGGCGTTTTACCGAATGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* *
63855806 TTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCT-GTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* *
63855846 TTTAGCGGCGTTTTAACAAAA-AGCCGCTA
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTA
63855875 TTACTTTGTT
Statistics
Matches: 100, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 7 0.07
40 47 0.47
41 46 0.46
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:63855885 original size:39 final size:40
Alignment explanation
Indices: 63855724--63855898 Score: 165
Period size: 40 Copynumber: 4.4 Consensus size: 40
63855714 ACTATATGAA
* * *
63855724 TTTTAGCGGCGTTTTACCAAAAGCGCCGC-AATGCTCTGGT
1 TTTTAGCGGCGTTTTAACAAAAGAGCCGCTAATACTCT-GT
* * * * * *
63855764 CTTTAGCGGCGTTTTACCGAATGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTAACAAAAGAGCCGCTAATACTCT-GT
* * * * *
63855805 CTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTAACAAAAGAGCCGCTAATACTCTGT
* *
63855845 TTTTAGCGGCGTTTTAACAAAA-AGCCGCTATTACTTTGT
1 TTTTAGCGGCGTTTTAACAAAAGAGCCGCTAATACTCTGT
*
63855884 TTTTAGTGGCGTTTT
1 TTTTAGCGGCGTTTT
63855899 TGTTAAAACA
Statistics
Matches: 120, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 27 0.22
40 47 0.39
41 46 0.38
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTAACAAAAGAGCCGCTAATACTCTGT
Found at i:63855968 original size:12 final size:12
Alignment explanation
Indices: 63855953--63855978 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63855943 GTTTTTTGAT
63855953 AAAACGCCGCTA
1 AAAACGCCGCTA
63855965 AAAACGCCGCTA
1 AAAACGCCGCTA
63855977 AA
1 AA
63855979 GCCTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:63860288 original size:53 final size:53
Alignment explanation
Indices: 63860159--63860413 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
63860149 ACACGGGTAC
* * * * *
63860159 CTTACCATTGCCATGACTTGTCACGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
* *
63860208 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
* * * *
63860261 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AA
* * * * *
63860316 CTTATCAATGCCATGTCTTGACATGGTATTACATGATTTCCTTGCCTTA-GAGA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGA-A
* *
63860369 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63860414 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 3 0.02
53 47 0.28
54 10 0.06
55 68 0.40
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
Found at i:63860350 original size:108 final size:110
Alignment explanation
Indices: 63860206--63860406 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
63860196 ATCCTTTTGA
* * *
63860206 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGA-A-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTA-GAGACCTCACCAA
63860269 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGT
* * *
63860314 AACTTATCAATGCCATGTCTTGACATGGTATTACATGATTTCCTTGCCTTAGAGACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAGACCTCACCAAT
*
63860379 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
63860407 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 2 0.02
108 47 0.57
109 7 0.08
110 27 0.33
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAGACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGT
Found at i:63868236 original size:16 final size:16
Alignment explanation
Indices: 63868217--63868247 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63868207 CTTCTTCACT
63868217 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
63868233 TACTTACTTACTTAA
1 TACTCACTTACTTAA
63868248 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:63868253 original size:20 final size:20
Alignment explanation
Indices: 63868214--63868253 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
63868204 AAACTTCTTC
* *
63868214 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
63868234 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
63868254 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:63868629 original size:55 final size:53
Alignment explanation
Indices: 63868439--63868693 Score: 220
Period size: 55 Copynumber: 4.8 Consensus size: 53
63868429 ACGCGGGTAC
* * * * *
63868439 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
63868488 CTTACCATTGCCATGTTTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
63868541 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
63868596 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
63868649 CCTTACCAATTTCCATGCCTT-AGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGA-CATGGTCTTACATGGGATCCTT
63868694 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 23, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 48 0.28
54 11 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:63868630 original size:108 final size:110
Alignment explanation
Indices: 63868486--63868686 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
63868476 ATCCTTTTGA
* * *
63868486 AACTTACCATTGCCATGTTTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
63868549 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
63868594 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
63868659 TTCCATGCCTTAGCATGGTCTTACATGG
66 TGCCATGCCTTAGCATGGTCTTACATGG
63868687 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:63870362 original size:40 final size:40
Alignment explanation
Indices: 63870318--63870534 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
63870308 CACTCGAATA
63870318 CCTTCGGGA-TATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACT-TAGCCCGGA-ACTAGTAACTCGCACAAATG
63870358 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
63870398 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
63870438 CCTTCGGGACTTAGCCCGGATA-TGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
* ** *
63870478 CCTTCGGG-CTTAGCCCGGAATTAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
63870517 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
63870535 ATTATCAATC
Statistics
Matches: 165, Mismatches: 7, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 34 0.21
40 128 0.78
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:63876890 original size:21 final size:21
Alignment explanation
Indices: 63876855--63876915 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
63876845 CTCTTGAAAT
*
63876855 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACATGCCCGTGTGGA
63876875 AGGGCAACATGCCCGTGTGGA
1 AGGGCAACATGCCCGTGTGGA
*
63876896 AGGGCAACATGCCTGTGTGG
1 AGGGCAACATGCCCGTGTGG
63876916 TCCTAACATG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
20 5 0.13
21 33 0.87
ACGTcount: A:0.21, C:0.25, G:0.39, T:0.15
Consensus pattern (21 bp):
AGGGCAACATGCCCGTGTGGA
Found at i:63878357 original size:94 final size:94
Alignment explanation
Indices: 63878202--63878381 Score: 245
Period size: 94 Copynumber: 1.9 Consensus size: 94
63878192 CTAGCTTGTC
* * *
63878202 TATCTCGAGGCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCAT
1 TATCTCGAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATATCAATGCCGATGCAT
*
63878267 GTCCCAGACATATCTTACACTGGCTTAAA
66 GACCCAGACATATCTTACACTGGCTTAAA
* * * ** *
63878296 TATCTCGAGGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAT-TGTGGTCGATGCA
1 TATCTCGAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATATCAAT-GCCGATGCA
*
63878360 TGACCCAGACATGTCTTACACT
65 TGACCCAGACATATCTTACACT
63878382 AGCACACATA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
93 1 0.01
94 73 0.99
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
TATCTCGAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATATCAATGCCGATGCAT
GACCCAGACATATCTTACACTGGCTTAAA
Found at i:63878392 original size:46 final size:48
Alignment explanation
Indices: 63878202--63878395 Score: 207
Period size: 46 Copynumber: 4.1 Consensus size: 48
63878192 CTAGCTTGTC
* * * *
63878202 TATCTCGAGGCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTC-
1 TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACA
* * * * * *
63878249 -GTCTCAATGCCGATGCATGTCCCAGACATATCTTACACTGGCTTAAA
1 TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACA
* *
63878296 TATCTCGAGGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCA
1 TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACA
* * * * *
63878344 TAT-T-GTGGTCGATGCATGACCCAGACATGTCTTACACTAGCACACA
1 TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACA
63878390 TATCTC
1 TATCTC
63878396 CCAATATCAA
Statistics
Matches: 118, Mismatches: 25, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
46 74 0.63
47 2 0.02
48 42 0.36
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACA
Found at i:63892681 original size:48 final size:48
Alignment explanation
Indices: 63892619--63892847 Score: 359
Period size: 48 Copynumber: 4.8 Consensus size: 48
63892609 CAAGATAAAT
* * * * *
63892619 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * * *
63892667 ACATGTGTATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
63892715 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
63892763 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
63892811 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
63892848 TGTTGTAACA
Statistics
Matches: 165, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 165 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:63892774 original size:96 final size:96
Alignment explanation
Indices: 63892619--63892847 Score: 395
Period size: 96 Copynumber: 2.4 Consensus size: 96
63892609 CAAGATAAAT
* * * * * *
63892619 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGACATGTGTATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGACATGTATATGTGGTAA
63892684 AGCCGAATGGCGAATGTGAAATATGTATGAG
66 AGCCGAATGGCGAATGTGAAATATGTATGAG
*
63892715 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGACATGTATATGTGGTAA
63892780 AGCCGAATGGCGAATGTGAAATATGTATGAG
66 AGCCGAATGGCGAATGTGAAATATGTATGAG
63892811 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
63892848 TGTTGTAACA
Statistics
Matches: 126, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 126 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGACATGTATATGTGGTAA
AGCCGAATGGCGAATGTGAAATATGTATGAG
Found at i:63892942 original size:37 final size:37
Alignment explanation
Indices: 63892892--63892994 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
63892882 GGAAATGTAT
63892892 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
63892929 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
63892966 TCCGGGTAAGACCCGATCACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
63892995 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.21, C:0.22, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:63895003 original size:40 final size:40
Alignment explanation
Indices: 63894943--63895377 Score: 582
Period size: 40 Copynumber: 10.9 Consensus size: 40
63894933 AGTTGTATAG
* *
63894943 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
**
63894983 TTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
63895023 CCGGACTAAGTTCCAAAGAGCATTCGTGCTAGTGATGTAG
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
63895063 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
63895103 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAG
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
63895143 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
** * *
63895183 CCGAACTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAG
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* * * *
63895223 CCAGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
63895263 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *** * * *
63895303 CTGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* * * *
63895343 CCGGGCTAGGTCCCGAAGAGCAATCATGCTAGTGA
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
63895378 CGTGTATTCG
Statistics
Matches: 344, Mismatches: 51, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 344 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:63898332 original size:48 final size:48
Alignment explanation
Indices: 63898262--63898479 Score: 330
Period size: 48 Copynumber: 4.5 Consensus size: 48
63898252 TATATATGTA
* * * * *
63898262 TGGTGAAGCCGAATGG-GTAATGTGAAATATATGTGTGACATGTGTATG
1 TGGTAAAGCCGAATGGCG-AATGTGAAATATATATGAGATATGTATATG
*
63898310 TGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATG
*
63898358 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATG
*
63898406 TGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATG
* *
63898454 TGGTAAAGCCGAATGGCTAGTGTGAA
1 TGGTAAAGCCGAATGGCGAATGTGAA
63898480 TGTTGTAACA
Statistics
Matches: 157, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 156 0.99
49 1 0.01
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (48 bp):
TGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATG
Found at i:63898406 original size:96 final size:96
Alignment explanation
Indices: 63898262--63898479 Score: 373
Period size: 96 Copynumber: 2.3 Consensus size: 96
63898252 TATATATGTA
* * * * *
63898262 TGGTGAAGCCGAATGGGTAATGTGAAATATATGTGTGACATGTGTATGTGGTAAAGCCGAATGGC
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGACATGTATATGTGGTAAAGCCGAATGGC
63898327 GAATGTGAAATATGTATGAGATATGTATATG
66 GAATGTGAAATATGTATGAGATATGTATATG
*
63898358 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGACATGTATATGTGGTAAAGCCGAATGGC
63898423 GAATGTGAAATATGTATGAGATATGTATATG
66 GAATGTGAAATATGTATGAGATATGTATATG
*
63898454 TGGTAAAGCCGAATGGCTAGTGTGAA
1 TGGTAAAGCCGAATGGCTAATGTGAA
63898480 TGTTGTAACA
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 115 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (96 bp):
TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGACATGTATATGTGGTAAAGCCGAATGGC
GAATGTGAAATATGTATGAGATATGTATATG
Done.