Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 205 of 325
Found at i:63898574 original size:37 final size:37
Alignment explanation
Indices: 63898524--63898626 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
63898514 GGAAATGTAT
63898524 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
63898561 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
63898598 TCCGGGTAAGACCCGATAACTATGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
63898627 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:63910289 original size:56 final size:55
Alignment explanation
Indices: 63910217--63910376 Score: 196
Period size: 56 Copynumber: 2.9 Consensus size: 55
63910207 CATAACATAG
* * *
63910217 CACGCCTCTCAACAGGGCTACATAAGAGCACCCAGACCTAGCATGCATCACATAA-C
1 CACGCCTCTCAACAGGGCTACAT-A-AGCTCCCAGACCTAGCATGTATCACATAATA
* * ** *
63910273 CACGACTCTCAACAGGGCTACATAAGCTCCTAGACCTAGTGTGTACCACATAATTA
1 CACGCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATGTATCACATAA-TA
* *
63910329 CATGCCTCTCAACAGGGCTACACAAGCTCCCAGACCTAGCATGTATCA
1 CACGCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATGTATCA
63910377 TGTCATCAAA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 23 0.26
55 1 0.01
56 63 0.72
ACGTcount: A:0.32, C:0.33, G:0.16, T:0.19
Consensus pattern (55 bp):
CACGCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATGTATCACATAATA
Found at i:63912946 original size:48 final size:47
Alignment explanation
Indices: 63912889--63913053 Score: 147
Period size: 48 Copynumber: 3.5 Consensus size: 47
63912879 AAGTTGACGC
* ***
63912889 CATGTCCCAGACAGCTCTTACATTAACTTGTCTATCTCGAGGCCGATG
1 CATGTCCCAGACAG-TCTTACACTAACTTAAATATCTCGAGGCCGATG
** *
63912937 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCTGATG
1 CATGTCCCAGACA-GTCTTACACTAACTTAAATATCTCGAGGCCGATG
* ** * * *
63912985 CATGTCCCAGACATATCTTACACTGGCTCT-CATAT-T-GTGGCTGATG
1 CATGTCCCAGACA-GTCTTACACTAACT-TAAATATCTCGAGGCCGATG
63913031 CATGTCCCAGACATGTCTTACAC
1 CATGTCCCAGACA-GTCTTACAC
63913054 AAGCACACAT
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
46 31 0.30
47 1 0.01
48 70 0.67
49 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACAGTCTTACACTAACTTAAATATCTCGAGGCCGATG
Found at i:63913065 original size:46 final size:48
Alignment explanation
Indices: 63912921--63913068 Score: 201
Period size: 48 Copynumber: 3.1 Consensus size: 48
63912911 TTAACTTGTC
* * *
63912921 TATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAAA
1 TATCTCGAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCACA
* *
63912969 TATCTCGAGGCTGATGCATGTCCCAGACATATCTTACACTGGCTCTCA
1 TATCTCGAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCACA
* ** *
63913017 TAT-T-GTGGCTGATGCATGTCCCAGACATGTCTTACACAAGCACACA
1 TATCTCGAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCACA
63913063 TATCTC
1 TATCTC
63913069 CCAATATTAA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 39 0.45
47 2 0.02
48 46 0.53
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
TATCTCGAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCACA
Found at i:63915392 original size:43 final size:43
Alignment explanation
Indices: 63915345--63915451 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
63915335 AGAACCTGGA
* * * * *
63915345 GCAGCATCGACACCTTGGTGTA-CTGGATGTGAGTGAGCGTCGG
1 GCAGCATCGGCACCTTGGTGCATC-GAATGTGAGGGAGCATCGG
*
63915388 GCAGCA-CTGGCACCTTGGTGCATCGAATGTGCGGGAGCATCGG
1 GCAGCATC-GGCACCTTGGTGCATCGAATGTGAGGGAGCATCGG
*
63915431 GTAGCATCGGCACCTTGGTGC
1 GCAGCATCGGCACCTTGGTGC
63915452 CCGGATATGC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
42 1 0.02
43 51 0.94
44 2 0.04
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (43 bp):
GCAGCATCGGCACCTTGGTGCATCGAATGTGAGGGAGCATCGG
Found at i:63921081 original size:14 final size:14
Alignment explanation
Indices: 63921062--63921091 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63921052 AAGAAAGAAT
*
63921062 GATGATGGATGAGG
1 GATGATGAATGAGG
63921076 GATGATGAATGAGG
1 GATGATGAATGAGG
63921090 GA
1 GA
63921092 ATGAAGGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.20
Consensus pattern (14 bp):
GATGATGAATGAGG
Found at i:63921184 original size:29 final size:29
Alignment explanation
Indices: 63921152--63921210 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
63921142 TAATAACATA
63921152 CTTGATTTACCATATTTATTAATATAAGG
1 CTTGATTTACCATATTTATTAATATAAGG
*
63921181 CTTGATTTACCATGTTTATTAATATAAGG
1 CTTGATTTACCATATTTATTAATATAAGG
63921210 C
1 C
63921211 ATTTCCATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (29 bp):
CTTGATTTACCATATTTATTAATATAAGG
Found at i:63921225 original size:25 final size:27
Alignment explanation
Indices: 63921156--63921218 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 27
63921146 AACATACTTG
*
63921156 ATTTACCATATTTATTAATATAAGGCTT
1 ATTTACCATGTTTATTAATATAAGGC-T
63921184 GATTTACCATGTTTATTAATATAAGGC-
1 -ATTTACCATGTTTATTAATATAAGGCT
63921211 ATTT-CCAT
1 ATTTACCAT
63921219 TATTATTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
25 4 0.12
26 4 0.12
29 25 0.76
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (27 bp):
ATTTACCATGTTTATTAATATAAGGCT
Found at i:63926635 original size:46 final size:46
Alignment explanation
Indices: 63926568--63926830 Score: 364
Period size: 46 Copynumber: 5.7 Consensus size: 46
63926558 TGGCAACCTG
63926568 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
63926614 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * *
63926660 TGTGTAAGACCATGGTTGAAAGATACTATGGCAACTTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * * *
63926706 TGTGTAAGACCATGGCTGAAAGATACCATGGCAACGTGACATTAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * **
63926752 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * * *
63926798 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
63926831 TCACGTCAAA
Statistics
Matches: 196, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 196 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:63926766 original size:138 final size:130
Alignment explanation
Indices: 63926519--63926830 Score: 408
Period size: 138 Copynumber: 2.3 Consensus size: 130
63926509 AGTGTGCTCT
* * *
63926519 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATGTGTGTAAGACCATGGC
* * **
63926584 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
63926649 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACTTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC-----AT--G-TGTGTAAG
* *
63926714 ACCATGGCTGAAAGATACCATGGCAACGTGACATTAAAAGAATAAGACCATGGTTGAAAGATACC
58 ACCATGGCTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
63926779 ATGGCAAC
123 ATGGCAAC
* * ** * * *
63926787 ATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCA
63926831 TCACGTCAAA
Statistics
Matches: 158, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
130 45 0.28
135 1 0.01
137 1 0.01
138 111 0.70
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATGTGTGTAAGACCATGGC
TGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:63927136 original size:23 final size:25
Alignment explanation
Indices: 63927091--63927137 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
63927081 AATAAATATA
*
63927091 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
63927116 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
63927138 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:63943667 original size:55 final size:54
Alignment explanation
Indices: 63943542--63943730 Score: 231
Period size: 55 Copynumber: 3.5 Consensus size: 54
63943532 AACTTTCCAT
* * *
63943542 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * *
63943595 TGCCATCCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * *
63943650 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTT-CCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
*
63943704 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
63943731 ATATCCTTAT
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.29
54 35 0.30
55 41 0.35
56 5 0.04
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:63943726 original size:54 final size:54
Alignment explanation
Indices: 63943542--63943738 Score: 245
Period size: 54 Copynumber: 3.6 Consensus size: 54
63943532 AACTTTCCAT
* * * * *
63943542 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAA
* * **
63943595 TGCCATCCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTT-CCTTATAG-AACTCATCAA
* * *
63943650 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAA
*
63943704 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
63943739 ATCTTACCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.25
54 42 0.34
55 41 0.33
56 5 0.04
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTTCCTTATAGAACTCATCAA
Found at i:63943772 original size:47 final size:47
Alignment explanation
Indices: 63943717--63943838 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
63943707 CATGCCTTGG
*
63943717 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
63943764 CATGGTCTTACACGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
63943811 CATGGTGTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
63943839 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:63948179 original size:43 final size:43
Alignment explanation
Indices: 63948117--63949191 Score: 487
Period size: 43 Copynumber: 25.2 Consensus size: 43
63948107 GACATCAGTG
* * * * * *
63948117 GTGCGAGAACCTCAAGCACCATTGGCACATTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* * * *
63948160 GTGCGGGAGCTTCGAGCACCATCAGCAACTTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* ** * *
63948203 GTGTGGGAGCCTCGAGCAGTATTGGCACCTTGGTACCTTGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* *
63948246 GTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* * *
63948288 AT-CTAGGAGCCTCG-GACACCATCAGCAACCTT-GTG-CTTGGAT
1 GTGC-GGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGCCTTGGAT
** * * * ** * * * *
63948330 GTATGAGAGCATCAAGCAAAATCAGCATCTTGGTACCTCGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* * * *
63948373 GTGCGGGAGCCTCGAGCAGCATCAGCACCTTGTTGCCTTAGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* * * *
63948416 GTGCAGGAGCCTCGAGCAACATCGGTATCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* * *
63948458 GTGCAGGAGCCTCG-GACACAATCGGCAACCTTGGTGCC-TAGAT
1 GTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGCCTTGGAT
* * * * * * *
63948501 ATGCTGAAGCCTCGAGCAGCATCGGTACATTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* * * * *
63948544 GTACGGGAGCCTCGAGCAGCATTGGCACCTTAGTGCCCTGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* * * * *
63948587 GTGCGGAAGCCTCGAACACTATCGGCAAAC-TAG-GCCATTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCC-TTGGAT
* *
63948629 CGTGCGAGAGCCTC-AGGCACCATCGACACCTTGGTG-CTTGGAT
1 -GTGCGGGAGCCTCGA-GCACCATCGGCACCTTGGTGCCTTGGAT
* * *
63948672 GTGCGGGAGCCTCG-GCACCATTGGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCCTTGGAT
* * * * *
63948713 CGTACGAGAGCCTC-AGGCACTATCGGCAACCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGA-GCACCATCGGC-ACCTTGGTGCCTTGGAT
* * * * * * *
63948756 CTTGCGAGAGCCTCGGGCACCATCGGTAACCTAGG-CCCTTAG-T
1 -GTGCGGGAGCCTCGAGCACCATCGG-CACCTTGGTGCCTTGGAT
** * * * *
63948799 CGTGCGAAAGCCTCGGGCACCATTGGCACATTGGTG-TTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
* * *
63948842 GTGCGGGAGCCTCGA-CACCATTGGTAACC-TAG-GCACTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGG-CACCTTGGTGC-CTTGGAT
* * * * * * **
63948883 CGTGCCGGAACCTCGGGCACCATCGGTAACCTAGG-CCCTTGGCC
1 -GTGCGGGAGCCTCGAGCACCATCGG-CACCTTGGTGCCTTGGAT
* * * * * *
63948927 GTACGAGAGCCTCGGGCACCATCAGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCCTTGGAT
* * * * * * *
63948969 CGTGTGAGAGCCTTGGGCACCATTGGCAACCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCCTTGGAT
* * * * * ** * * *
63949012 CGTGTGAGAGCCTTGGGCACCGTTAGCAACCTAGG-CCCTTGGTT
1 -GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCCTTGGAT
* *
63949056 GTGAGAGAGCCTC-AGGCACCATCGGCACCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGA-GCACCATCGGCACCTTGGTGCCTTGGAT
* * * *
63949098 GTGTGGGAGACTCGAACACCATCGGCAACC-TAG-GCCATTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCC-TTGGAT
** * **
63949140 CGTGCTAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCAGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
63949184 GTGCGGGA
1 GTGCGGGA
63949192 TAAAGAAAAG
Statistics
Matches: 809, Mismatches: 174, Indels: 98
0.75 0.16 0.09
Matches are distributed among these distances:
40 1 0.00
41 30 0.04
42 210 0.26
43 556 0.69
44 12 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
Found at i:63948468 original size:170 final size:168
Alignment explanation
Indices: 63948180--63948601 Score: 499
Period size: 170 Copynumber: 2.5 Consensus size: 168
63948170 TTCGAGCACC
* * *
63948180 ATCAGCAACTTGGTGCCTCGGATGTGTGGGAGCCTCGAGCAGTATTGGCACCTTGGTACCTTGGA
1 ATCAGC-ACTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTT-GTGCCTTGGA
* *
63948245 TGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATATCTAGGAGCCTCGGACACCAT
64 TGTGCG-GAGCCTCGAGCAACATCGGCACCTTGGTGCTTGGATATCTAGGAGCCTCGGACACAAT
* * *
63948310 CAGCAACCTT-GTGCTTGGATGT-ATGAGAGCATCAAGCAAA
128 CAGCAACCTTGGTGCCTAGATATGATGA-AGCATCAAGCAAA
* ** *
63948350 ATCAGCATCTTGGTACCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGTTGCCTTAGA
1 ATCAGCA-CTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTG-TGCCTTGGA
* * *
63948415 TGTGCAGGAGCCTCGAGCAACATCGGTATCTTGGTGCTTGGATGTGC-AGGAGCCTCGGACACAA
64 TGTGC-GGAGCCTCGAGCAACATCGGCACCTTGGTGCTTGGATAT-CTAGGAGCCTCGGACACAA
* * * * **
63948479 TCGGCAACCTTGGTGCCTAGATATGCTGAAGCCTCGAGCAGC
127 TCAGCAACCTTGGTGCCTAGATATGATGAAGCATCAAGCAAA
* * * *
63948521 ATCGGTACATTGGTGCCTCGGATGTACGGGAGCCTCGAGCAGCATTGGCACCTTAGTGCCCTGGA
1 ATCAGCAC-TTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTT-GTGCCTTGGA
63948586 TGTGCGGAAGCCTCGA
64 TGTGCGG-AGCCTCGA
63948602 ACACTATCGG
Statistics
Matches: 214, Mismatches: 29, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
169 2 0.01
170 122 0.57
171 86 0.40
172 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (168 bp):
ATCAGCACTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGTGCCTTGGATG
TGCGGAGCCTCGAGCAACATCGGCACCTTGGTGCTTGGATATCTAGGAGCCTCGGACACAATCAG
CAACCTTGGTGCCTAGATATGATGAAGCATCAAGCAAA
Found at i:63948512 original size:128 final size:129
Alignment explanation
Indices: 63948380--63948614 Score: 303
Period size: 128 Copynumber: 1.8 Consensus size: 129
63948370 GATGTGCGGG
* * * * * *
63948380 AGCCTCGAGCAGCATCAGCACCTTGTTGCCTTAGATGTGCAGGAGCCTCGAGCAACATCGGTATC
1 AGCCTCGAGCAGCATCAGCACATTGGTGCCTCAGATGTACAGGAGCCTCGAGCAACATCGGCACC
* * *
63948445 TTGGTG-CTTGGATGTGCAGG-AGCCTCGGACACAATCGGCAACCTTGGTGCCTAGATATGCTGA
66 TTAGTGCCCTGGATGTGC-GGAAGCCTCGAACACAATCGGCAACCTTGGTGCCTAGATATGCTGA
* * * * * *
63948508 AGCCTCGAGCAGCATCGGTACATTGGTGCCTCGGATGTACGGGAGCCTCGAGCAGCATTGGCACC
1 AGCCTCGAGCAGCATCAGCACATTGGTGCCTCAGATGTACAGGAGCCTCGAGCAACATCGGCACC
*
63948573 TTAGTGCCCTGGATGTGCGGAAGCCTCGAACACTATCGGCAA
66 TTAGTGCCCTGGATGTGCGGAAGCCTCGAACACAATCGGCAA
63948615 ACTAGGCCAT
Statistics
Matches: 89, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
128 60 0.67
129 29 0.33
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (129 bp):
AGCCTCGAGCAGCATCAGCACATTGGTGCCTCAGATGTACAGGAGCCTCGAGCAACATCGGCACC
TTAGTGCCCTGGATGTGCGGAAGCCTCGAACACAATCGGCAACCTTGGTGCCTAGATATGCTGA
Found at i:63948801 original size:86 final size:87
Alignment explanation
Indices: 63948550--63949167 Score: 557
Period size: 86 Copynumber: 7.2 Consensus size: 87
63948540 GGATGTACGG
* * * ** *
63948550 GAGCCTCGAGCAGCATTGGC-ACCTTAGTGCCC-TGGAT-GTGCG-GAAGCCTCGAACACTATCG
1 GAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGGATCGTGCGAG-AGCCTCGGGCACCATCG
* *
63948611 GCAAACTAGGCCATTGGTCGTGCGA
63 GCAACCTAGGCCCTTGGTCGTGCGA
* * * ** * *
63948636 GAGCCTCAGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-GGCACCATTGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCA
*
63948698 ACCTAGGCCCTTGGTCGTACGA
66 ACCTAGGCCCTTGGTCGTGCGA
* * * *
63948720 GAGCCTCAGGCACTATCGGCAACCTAGGCCCTTGG-TCTTGCGAGAGCCTCGGGCACCATCGGTA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCA
*
63948784 ACCTAGGCCCTTAGTCGTGCGA
66 ACCTAGGCCCTTGGTCGTGCGA
* * * * *** * * * *
63948806 AAGCCTCGGGCACCATTGGC-ACATTGGTGTTTGGAT-GTGCGGGAGCCTC-GACACCATTGGTA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCA
*
63948868 ACCTAGGCACTTGGTCGTGCCG-
66 ACCTAGGCCCTTGGTCGTG-CGA
* * * * *
63948890 GAACCTCGGGCACCATCGGTAACCTAGGCCCTTGG-CCGTACGAGAGCCTCGGGCACCATCAGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCA
*
63948954 ACCTAGGCCCTTGGTCGTGTGA
66 ACCTAGGCCCTTGGTCGTGCGA
* * * * * **
63948976 GAGCCTTGGGCACCATTGGCAACCTAGGCCCTTGG-TCGTGTGAGAGCCTTGGGCACCGTTAGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCA
* *
63949040 ACCTAGGCCCTTGGTTGTGAGA
66 ACCTAGGCCCTTGGTCGTGCGA
* * ** * * * **
63949062 GAGCCTCAGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAGACTCGAACACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCA
* *
63949125 ACCTAGGCCATTGGTCGTGCTA
66 ACCTAGGCCCTTGGTCGTGCGA
63949147 GAGCCTCGGGCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCA
63949168 CCTTGGTGCC
Statistics
Matches: 429, Mismatches: 90, Indels: 26
0.79 0.17 0.05
Matches are distributed among these distances:
84 93 0.22
85 150 0.35
86 186 0.43
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (87 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCA
ACCTAGGCCCTTGGTCGTGCGA
Found at i:63948803 original size:170 final size:171
Alignment explanation
Indices: 63948607--63949191 Score: 662
Period size: 170 Copynumber: 3.4 Consensus size: 171
63948597 CTCGAACACT
* * *
63948607 ATCGGCAAACTAGGCCATTGGTCGTGCGAGAGCCTCAGGCACCATCGACACCTTGGTGCTTGGAT
1 ATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT
*
63948672 GTGCGGGAGCCTCGGCACCATTGGCAACCTAGGCCCTTGGTCGT-ACGAGAGCCTCAGGCACTAT
66 GTGCGGGAGCCTCGGCACCATTGGCAACCTAGGCCCTTGGTCGTGACGAGAGCCTCAGGCACCAT
63948736 CGGCAACCTAGGCCCTTGGTCTTGCGAGAGCCTCGGGCACC
131 CGGCAACCTAGGCCCTTGGTCTTGCGAGAGCCTCGGGCACC
* * * * * * *
63948777 ATCGGTAACCTAGGCCCTTAGTCGTGCGAAAGCCTCGGGCACCATTGGCACATTGGTGTTTGGAT
1 ATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT
* * * * * *
63948842 GTGCGGGAGCCTCGACACCATTGGTAACCTAGGCACTTGGTCGTGCCG-GAACCTCGGGCACCAT
66 GTGCGGGAGCCTCGGCACCATTGGCAACCTAGGCCCTTGGTCGTGACGAGAGCCTCAGGCACCAT
* * * *
63948906 CGGTAACCTAGGCCCTTGGCCGTACGAGAGCCTCGGGCACC
131 CGGCAACCTAGGCCCTTGGTCTTGCGAGAGCCTCGGGCACC
* * * * * * **
63948947 ATCAGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTTGGGCACCATTGGCAACCTAGGCCCTTGG-
1 ATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGA
* * * * * *
63949011 TCGTGTGAGAGCCTTGGGCACCGTTAGCAACCTAGGCCCTTGGTTGTGA-GAGAGCCTCAGGCAC
65 T-GTGCGGGAGCC-TCGGCACCATTGGCAACCTAGGCCCTTGGTCGTGACGAGAGCCTCAGGCAC
* ** * * **
63949075 CATCGGC-ACCTTGGTGCTTGGATGTGTG-G-GAGACTCGAACACC
128 CATCGGCAACCTAGGCCCTTGG-TCT-TGCGAGAGCCTCGGGCACC
* **
63949118 ATCGGCAACCTAGGCCATTGGTCGTGCTAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCAGA
1 ATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGA
63949183 TGTGCGGGA
65 TGTGCGGGA
63949192 TAAAGAAAAG
Statistics
Matches: 338, Mismatches: 68, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
170 196 0.58
171 95 0.28
172 46 0.14
173 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.21
Consensus pattern (171 bp):
ATCGGCAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT
GTGCGGGAGCCTCGGCACCATTGGCAACCTAGGCCCTTGGTCGTGACGAGAGCCTCAGGCACCAT
CGGCAACCTAGGCCCTTGGTCTTGCGAGAGCCTCGGGCACC
Found at i:63955303 original size:75 final size:75
Alignment explanation
Indices: 63955152--63955306 Score: 168
Period size: 75 Copynumber: 2.1 Consensus size: 75
63955142 AATGAGTCCT
** *
63955152 TCCCCAATCCCAAAGGTAGAATTCAAATACTGTTACATGTCCAGTACCCAATAATAAATAAATGA
1 TCCCCAATCCCAAAGGTAGAATTCAAATACCATTACATGTCCAGTACCCAACAATAAATAAATGA
* *
63955217 TCTCGGTCCC
66 TCCCGGCCCC
** * * ** * *
63955227 TCCCCAATCCCAAAGGTAGAATTCGGATACCATTGCATGTTCAGTGTCCAACAATGAATGAATTG
1 TCCCCAATCCCAAAGGTAGAATTCAAATACCATTACATGTCCAGTACCCAACAATAAAT-AAATG
*
63955292 -TCCCTGCCCC
65 ATCCCGGCCCC
63955302 TCCCC
1 TCCCC
63955307 TTTTCCAACA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
75 61 0.94
76 4 0.06
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (75 bp):
TCCCCAATCCCAAAGGTAGAATTCAAATACCATTACATGTCCAGTACCCAACAATAAATAAATGA
TCCCGGCCCC
Found at i:63956187 original size:15 final size:15
Alignment explanation
Indices: 63956167--63956197 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63956157 GTCATGTAAG
63956167 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
63956182 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
63956197 T
1 T
63956198 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:63956390 original size:17 final size:17
Alignment explanation
Indices: 63956356--63956394 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
63956346 TAAGCTTTTG
63956356 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
63956373 AATTTTATATTA-AGAAC
1 -ATTTTATATGAGAGAAC
63956390 ATTTT
1 ATTTT
63956395 CCACAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 5 0.25
18 10 0.50
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:63957160 original size:15 final size:15
Alignment explanation
Indices: 63957136--63957165 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63957126 TGGAGATCGA
*
63957136 GGAAATGGTCGTGGT
1 GGAAAAGGTCGTGGT
63957151 GGAAAAGGTCGTGGT
1 GGAAAAGGTCGTGGT
63957166 CAAGAAGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (15 bp):
GGAAAAGGTCGTGGT
Found at i:63960546 original size:15 final size:15
Alignment explanation
Indices: 63960526--63960556 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63960516 GTCATGTAAG
63960526 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
63960541 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
63960556 T
1 T
63960557 ATATTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:63960748 original size:17 final size:17
Alignment explanation
Indices: 63960715--63960753 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
63960705 TAAGCTTTTG
63960715 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
63960732 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
63960749 ATTTT
1 ATTTT
63960754 CCACAACTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:63961507 original size:25 final size:25
Alignment explanation
Indices: 63961470--63961521 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
63961460 TAATAAAAGG
** *
63961470 ATTGACGTTTTAACAACAATGGGCC
1 ATTGACGACTTAACAACAATAGGCC
63961495 ATTGACGACTTAACAACAATAGGCC
1 ATTGACGACTTAACAACAATAGGCC
63961520 AT
1 AT
63961522 CGCATTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (25 bp):
ATTGACGACTTAACAACAATAGGCC
Found at i:63969102 original size:45 final size:48
Alignment explanation
Indices: 63969002--63969102 Score: 127
Period size: 51 Copynumber: 2.1 Consensus size: 48
63968992 TTGAATCTTT
***
63969002 TTCGAATTCGAATAGTGAAACTAGCCGGTTCATCTTGGCCTCATACTCTTT
1 TTCGAATTCGAATAGTGAAACTAGCCGGTTCATCTTGG-C-CA-ACTCAGG
63969053 TTCGAATTCGAATAGTGAAACTAGCCGGTTCATCTTGG-C-A-TCAGG
1 TTCGAATTCGAATAGTGAAACTAGCCGGTTCATCTTGGCCAACTCAGG
63969098 TTCGA
1 TTCGA
63969103 GGAATTTTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
45 7 0.15
46 1 0.02
48 1 0.02
51 38 0.81
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (48 bp):
TTCGAATTCGAATAGTGAAACTAGCCGGTTCATCTTGGCCAACTCAGG
Found at i:63980291 original size:43 final size:43
Alignment explanation
Indices: 63980208--63980292 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
63980198 TCAGTGGTGT
**
63980208 GAGAGCTTCGAGCACCATCGACACCTCGATGCCTTGGATGTGC
1 GAGAGCTTCGAGCACCATCGACACCTCGATGCCTCAGATGTGC
* * * *
63980251 GAGAGCTTTGAGCACCATC-AGCACCTTGGTGTCTCAGATGTG
1 GAGAGCTTCGAGCACCATCGA-CACCTCGATGCCTCAGATGTG
63980293 TAGGAGCCTC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.03
43 34 0.97
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (43 bp):
GAGAGCTTCGAGCACCATCGACACCTCGATGCCTCAGATGTGC
Found at i:63984093 original size:43 final size:43
Alignment explanation
Indices: 63984045--63984318 Score: 157
Period size: 43 Copynumber: 6.4 Consensus size: 43
63984035 CGAGGGTGCT
* *
63984045 GATGGTACCCGAGGCTCCAGCATGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCC
* * * ** *
63984088 GATGGTGTCCGAGGATCCCA-CAC-ATCTAAGCACCAAGG-TGCC
1 GATGGTGCCCGAGGCT-CCAGCACGA-CCAAGGGCCTAGGTTGCC
* * ** * * *
63984130 AATGGTGCTCGAGGCTCTTGTACGACCAAGGGCCTAGCTTGTC
1 GATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCC
* * * *
63984173 AATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGTC
1 GATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCC
** * * ** ** *
63984216 GATGGTGTTCGAGGCTCCCGCAC-ATTCAAGCACGAAGG-TGTC
1 GATGGTGCCCGAGGCTCCAGCACGA-CCAAGGGCCTAGGTTGCC
* *
63984258 GATAGTGCCTGAGGCTCCTA-CACGACCAAGGGCCTA-GTTCGCC
1 GATGGTGCCCGAGGCTCC-AGCACGACCAAGGGCCTAGGTT-GCC
* * *
63984301 GATGATGTCTGAGGCTCC
1 GATGGTGCCCGAGGCTCC
63984319 CACACATCCA
Statistics
Matches: 173, Mismatches: 48, Indels: 20
0.72 0.20 0.08
Matches are distributed among these distances:
41 2 0.01
42 56 0.32
43 112 0.65
44 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (43 bp):
GATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCC
Found at i:63984178 original size:128 final size:127
Alignment explanation
Indices: 63983949--63984294 Score: 349
Period size: 128 Copynumber: 2.7 Consensus size: 127
63983939 TATCCAACGT
* * *
63983949 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCTAAGCACCAAGGTGCCAATGGTGCTCGA
* * * **** * * * *
63984014 GGATCTCG-CAAATTTGAGGCACGAGGGTGCTGATGGTACCCGAGGCTCCAGCATGACCAAGGG
66 GGCTCTTGACGACCAAG-GGC-CTAGCGTGCTAATGGTACCCGAGGCTCCAGCACGACCAAGGG
* *
63984077 CCTAGGTTGCCGATGGTGTCCGAGGATCCCACACATCTAAGCACCAAGGTGCCAATGGTGCTCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCTAAGCACCAAGGTGCCAATGGTGCTCGA
* * * *
63984142 GGCTCTTGTACGACCAAGGGCCTAGCTTG-TCAATGGTGCCCGAGGCTCCCGTACGACCAAGGG
66 GGCTCTTG-ACGACCAAGGGCCTAGCGTGCT-AATGGTACCCGAGGCTCCAGCACGACCAAGGG
* * * * * *
63984205 CCTAGGTTGTCGATGGTGTTCGAGGCTCCCGCACAT-TCAAGCACGAAGGTGTCGATAGTGC-CT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCT-AAGCACCAAGGTGCCAATGGTGCTC-
**
63984268 GAGGCTCCTACACGACCAAGGGCCTAG
64 GAGGCT-CTTGACGACCAAGGGCCTAG
63984295 TTCGCCGATG
Statistics
Matches: 182, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
127 3 0.02
128 171 0.94
129 5 0.03
130 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (127 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCTAAGCACCAAGGTGCCAATGGTGCTCGA
GGCTCTTGACGACCAAGGGCCTAGCGTGCTAATGGTACCCGAGGCTCCAGCACGACCAAGGG
Found at i:63984330 original size:128 final size:128
Alignment explanation
Indices: 63984052--63984331 Score: 309
Period size: 128 Copynumber: 2.2 Consensus size: 128
63984042 GCTGATGGTA
*
63984052 CCCGAGGCT-CCAGCATGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGATCCCACACATCTA
1 CCCGAGGCTCCCA-CACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGATCCCACACATCTA
* * ** * *
63984116 AGCACCAAGGTGCCAATGGTGCTCGAGGCTCTTGTACGACCAAGGGCCTAGCTTGTCAATGGTG
65 AGCACCAAGGTGCCAATAGTGCTCGAGGCTCCTACACGACCAAGGGCCTAGCTTGCCAATGATG
** * * * *
63984180 CCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGTCGATGGTGTTCGAGGCTCCCGCACAT-TCA
1 CCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGATCCCACACATCT-A
* * * *
63984244 AGCACGAAGGTGTCGATAGTGC-CTGAGGCTCCTACACGACCAAGGGCCTAG-TTCGCCGATGAT
65 AGCACCAAGGTGCCAATAGTGCTC-GAGGCTCCTACACGACCAAGGGCCTAGCTT-GCCAATGAT
63984307 G
128 G
* *
63984308 TCTGAGGCTCCCACAC-ATCCAAGG
1 CCCGAGGCTCCCACACGA-CCAAGG
63984332 CACCAAGGTG
Statistics
Matches: 126, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
127 5 0.04
128 119 0.94
129 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (128 bp):
CCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGATCCCACACATCTAA
GCACCAAGGTGCCAATAGTGCTCGAGGCTCCTACACGACCAAGGGCCTAGCTTGCCAATGATG
Found at i:63984345 original size:43 final size:43
Alignment explanation
Indices: 63984311--63984425 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
63984301 GATGATGTCT
*
63984311 GAGGCTCCCACACATCCAAGGCACCAAGGTGCCGATGCTACTC
1 GAGGCTCCCACACATCCAAGGCACCAAGGTGCCGATACTACTC
* * *
63984354 GAGGCTCCCGTC-CATCCGAGGCACCAAGGTACCGATACTACTC
1 GAGGCTCCC-ACACATCCAAGGCACCAAGGTGCCGATACTACTC
* *
63984397 GAGGCTTCCACACAT-CTAGGCACCAAGGT
1 GAGGCTCCCACACATCCAAGGCACCAAGGT
63984426 TACTGATGGT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 14 0.22
43 48 0.76
44 1 0.02
ACGTcount: A:0.25, C:0.36, G:0.23, T:0.16
Consensus pattern (43 bp):
GAGGCTCCCACACATCCAAGGCACCAAGGTGCCGATACTACTC
Found at i:63984347 original size:128 final size:128
Alignment explanation
Indices: 63984052--63984363 Score: 294
Period size: 128 Copynumber: 2.4 Consensus size: 128
63984042 GCTGATGGTA
* * * * * *
63984052 CCCGAGGCT-CCAGCATGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGATCCCACACATCTA
1 CCCGAGGCTCCCA-CACGACCAAGGACCAAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCTA
* * ** * *
63984116 AGCACCAAGGTGCCAATGGTGCTCGAGGCTCTTGTACGACCAAGGGCCTAGCTTGTCAATGGTG
65 AGCACCAAGGTGCCAATAGTGCTCGAGGCTCCTACACGACCAAGGGCCTAGCTTGCCAATGATG
** * * *
63984180 CCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGTCGATGGTGTTCGAGGCTCCCGCACAT-TCA
1 CCCGAGGCTCCCACACGACCAAGGACCAAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCT-A
* * * *
63984244 AGCACGAAGGTGTCGATAGTGC-CTGAGGCTCCTACACGACCAAGGGCCTAG-TTCGCCGATGAT
65 AGCACCAAGGTGCCAATAGTGCTC-GAGGCTCCTACACGACCAAGGGCCTAGCTT-GCCAATGAT
63984307 G
128 G
* * * **
63984308 TCTGAGGCTCCCACAC-ATCCAAGGCACCAAGG-TGCCGATGCTACTCGAGGCTCCCG
1 CCCGAGGCTCCCACACGA-CCAAGG-ACCAAGGTTGCCGATGGTGTTCGAGGCTCCCG
63984364 TCCATCCGAG
Statistics
Matches: 151, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
127 5 0.03
128 139 0.92
129 7 0.05
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (128 bp):
CCCGAGGCTCCCACACGACCAAGGACCAAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCTAA
GCACCAAGGTGCCAATAGTGCTCGAGGCTCCTACACGACCAAGGGCCTAGCTTGCCAATGATG
Found at i:63984491 original size:69 final size:69
Alignment explanation
Indices: 63984371--63984507 Score: 175
Period size: 69 Copynumber: 2.0 Consensus size: 69
63984361 CCGTCCATCC
* * * * *
63984371 GAGGCACCAAGGTACCGATACTACTCGAGGCTTCCACACATCTAGGCACCAAGGTTACTGATGGT
1 GAGGCACCAAGGTACCGATACTACTCAAGGCTCCCACACATCCAGGAACCAAGGTTACCGATGGT
63984436 GTTT
66 GTTT
* ** * * *
63984440 GAGGCACCAAGGTGCCGATGTTGCTCAAGGCTCCCTCACATCCAGGAACCAAGGTTGCCGATGGT
1 GAGGCACCAAGGTACCGATACTACTCAAGGCTCCCACACATCCAGGAACCAAGGTTACCGATGGT
63984505 GTT
66 GTT
63984508 CAAGCCTCCC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
69 57 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (69 bp):
GAGGCACCAAGGTACCGATACTACTCAAGGCTCCCACACATCCAGGAACCAAGGTTACCGATGGT
GTTT
Found at i:63984492 original size:42 final size:43
Alignment explanation
Indices: 63984445--63984525 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
63984435 TGTTTGAGGC
* * *
63984445 ACCAAGG-TGCCGATGTTGCTCAAGGCTCCCTCACATCCAGGA
1 ACCAAGGTTGCCGATGGTGCTCAAGCCTCCCGCACATCCAGGA
*
63984487 ACCAAGGTTGCCGATGGTGTTCAAGCCTCCCGCACATCC
1 ACCAAGGTTGCCGATGGTGCTCAAGCCTCCCGCACATCC
63984526 GAGGTACCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 7 0.21
43 27 0.79
ACGTcount: A:0.22, C:0.35, G:0.23, T:0.20
Consensus pattern (43 bp):
ACCAAGGTTGCCGATGGTGCTCAAGCCTCCCGCACATCCAGGA
Found at i:63984786 original size:25 final size:26
Alignment explanation
Indices: 63984756--63984827 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
63984746 GCTTTTGTTC
*
63984756 CAAAAA-GGGAAGGACCGGGATAATT
1 CAAAAAGGGGAGGGACCGGGATAATT
* * *
63984781 CTAAAAGGGGAGGGACTGGGATGATT
1 CAAAAAGGGGAGGGACCGGGATAATT
63984807 CAAAAAGGGGAGGGACCGGGA
1 CAAAAAGGGGAGGGACCGGGA
63984828 CGAATCGTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 5 0.12
26 35 0.88
ACGTcount: A:0.38, C:0.11, G:0.40, T:0.11
Consensus pattern (26 bp):
CAAAAAGGGGAGGGACCGGGATAATT
Found at i:63996397 original size:30 final size:30
Alignment explanation
Indices: 63996360--63996429 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
63996350 TGTGGGCTTA
63996360 CCGTGTGTCACACACGGCCTAGACACATGC
1 CCGTGTGTCACACACGGCCTAGACACATGC
*
63996390 TCGTGTGTCACACACGGCCTAGACACATGC
1 CCGTGTGTCACACACGGCCTAGACACATGC
63996420 CCGTGTGTCA
1 CCGTGTGTCA
63996430 TACCTATGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.21, C:0.34, G:0.24, T:0.20
Consensus pattern (30 bp):
CCGTGTGTCACACACGGCCTAGACACATGC
Found at i:64019525 original size:55 final size:53
Alignment explanation
Indices: 64019438--64019673 Score: 223
Period size: 55 Copynumber: 4.4 Consensus size: 53
64019428 ATTAAGGTTC
*
64019438 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGA
* * * * * *
64019493 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGG-A
* * * * * *
64019549 AAGG-TCCCATGTAAAGACCATGCCAAGGCATGGCATTGGTGA-CTTCATAAGGC
1 AAGGATACCATGT-AAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGA
* *
64019602 AAGGATACCATGTAAGACCATGTCATGACATGGCAA-TGGTAAGTTT-TAA--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGA
64019652 AAGGATACCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
64019674 ACAATTCATA
Statistics
Matches: 148, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
50 22 0.15
52 3 0.02
53 30 0.20
54 22 0.15
55 41 0.28
56 30 0.20
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGA
Found at i:64019645 original size:109 final size:109
Alignment explanation
Indices: 64019445--64019646 Score: 282
Period size: 109 Copynumber: 1.8 Consensus size: 109
64019435 TTCAAGGATA
** *
64019445 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGAAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGT-AGACTTCTAAGGAAAGGAAACCATGTAAGA
*
64019510 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
65 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
64019555 CCATGTAAAGACCATGCCAAGGCATGG-CATTGGT-GACTTCATAAGGCAAGGATACCATGTAAG
1 CCATGT-AAGACCATGCCAAGGCATGGAAATTGGTAGACTTC-TAAGGAAAGGAAACCATGTAAG
* *
64019618 ACCATGTCATGACATGGCAATGGTAAGTT
64 ACCATGTCAAGACATGGCAATGATAAGTT
64019647 TTAAAAAGGA
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
108 4 0.05
109 45 0.56
110 12 0.15
111 20 0.25
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAGACTTCTAAGGAAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:64019789 original size:23 final size:24
Alignment explanation
Indices: 64019763--64019807 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
64019753 AAGGTAAGGT
*
64019763 AAGGTAAGACGAGTT-ATACTAAA
1 AAGGTAAGACAAGTTCATACTAAA
64019786 AAGGTAAGACAAGTTCATACTA
1 AAGGTAAGACAAGTTCATACTA
64019808 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.47, C:0.11, G:0.20, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATACTAAA
Found at i:64019907 original size:16 final size:16
Alignment explanation
Indices: 64019886--64019916 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64019876 ATAAATTTCA
64019886 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
64019902 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
64019917 AGTGAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:64027123 original size:55 final size:54
Alignment explanation
Indices: 64027036--64027293 Score: 212
Period size: 55 Copynumber: 4.8 Consensus size: 54
64027026 ATTAGGGTTC
* *
64027036 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGGTTTCTAAGGA
* * * * * *
64027091 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAA-GTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTT--TCTAAGG-A
* * ** *
64027147 AAGG-T-CTCATGTAAGACCATGCCAAGGCATGGCATTGGT--GACTTCATAAGGC
1 AAGGATAC-CATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTTTC-TAAGGA
*
64027199 AAGGATACCATGTAAGACCATGTCAAGACATGGTAA-TGGTAA-GTTT-TAA--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGGTTTCTAAGGA
** * * *
64027249 AAGGATACCACATAAGACCATGACAAGTCATGGAAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGT
64027294 ACCCGCATAT
Statistics
Matches: 163, Mismatches: 27, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
49 2 0.01
50 35 0.21
51 2 0.01
52 8 0.05
53 36 0.22
54 12 0.07
55 64 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTTTCTAAGGA
Found at i:64027242 original size:108 final size:109
Alignment explanation
Indices: 64027044--64027243 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 109
64027034 TCAAGGATAC
** * *
64027044 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGTAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGT-AGACTTCTAAGGCAAGGAAACCATGTAAGAC
*
64027109 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
65 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
* *
64027154 CATGTAAGACCATGCCAAGGCATGG-CATTGGT-GACTTCATAAGGCAAGGATACCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAGACTTC-TAAGGCAAGGAAACCATGTAAGAC
* *
64027217 CATGTCAAGACATGGTAATGGTAAGTT
65 CATGTCAAGACATGGCAATGATAAGTT
64027244 TTAAAAAGGA
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 4 0.05
108 45 0.56
109 6 0.08
110 25 0.31
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGAAATTGGTAGACTTCTAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:64040436 original size:35 final size:35
Alignment explanation
Indices: 64040388--64040458 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
64040378 CATCTCTAGA
* *
64040388 GCTTGACAGATATGGAAAGTGATCTTCAAAGATAT
1 GCTTGACAAATATGGAAAGGGATCTTCAAAGATAT
* *
64040423 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGACAAATATGGAAAGGGATCTTCAAAGATAT
64040458 G
1 G
64040459 TGATCCTAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.27
Consensus pattern (35 bp):
GCTTGACAAATATGGAAAGGGATCTTCAAAGATAT
Found at i:64048487 original size:115 final size:115
Alignment explanation
Indices: 64048284--64048510 Score: 375
Period size: 115 Copynumber: 2.0 Consensus size: 115
64048274 CCAAGATTCA
* * **
64048284 GATAAGAATTTTTTGGCCCAGGTTTGGCCCGGGTCGACTTAAACTGCATAATTTTTTTTTTGTTG
1 GATAAGAATTTTTTGGCCCAGGCTTGGCCCAGCCCGACTTAAACTGCATAA-TTTTTTTTTGTTG
64048349 CTGTTTACTATTGTTTTGCTACTACATTGCTATTATTTTGTTGGTATCTCG
65 CTGTTTACTATTGTTTTGCTACTACATTGCTATTATTTTGTTGGTATCTCG
* *
64048400 GATAAGGATTTTTTGGCTCAGGCTTGGCCCAAGCCCGACTTAAACTGCATAA-TTTTTTTTGTTG
1 GATAAGAATTTTTTGGCCCAGGCTTGGCCC-AGCCCGACTTAAACTGCATAATTTTTTTTTGTTG
64048464 CTGTTTACTATTGTTTTGCTACTACATTGCTATTATTTTGTTGGTAT
65 CTGTTTACTATTGTTTTGCTACTACATTGCTATTATTTTGTTGGTAT
64048511 TATTTGGATG
Statistics
Matches: 104, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
115 59 0.57
116 27 0.26
117 18 0.17
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.46
Consensus pattern (115 bp):
GATAAGAATTTTTTGGCCCAGGCTTGGCCCAGCCCGACTTAAACTGCATAATTTTTTTTTGTTGC
TGTTTACTATTGTTTTGCTACTACATTGCTATTATTTTGTTGGTATCTCG
Found at i:64051103 original size:22 final size:22
Alignment explanation
Indices: 64051078--64051120 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
64051068 TTTAAATATT
*
64051078 AAAATACTTTTTATAATTTTTA
1 AAAATAATTTTTATAATTTTTA
*
64051100 AAAATAATTTTTATATTTTTT
1 AAAATAATTTTTATAATTTTT
64051121 TAATTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
AAAATAATTTTTATAATTTTTA
Found at i:64056035 original size:13 final size:13
Alignment explanation
Indices: 64056017--64056051 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
64056007 CGGCTAACCT
64056017 ACATAATTAAATA
1 ACATAATTAAATA
64056030 ACATAATTAAATA
1 ACATAATTAAATA
*
64056043 AAATAATTA
1 ACATAATTA
64056052 TTCATATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:64063484 original size:37 final size:37
Alignment explanation
Indices: 64063423--64063558 Score: 211
Period size: 37 Copynumber: 3.7 Consensus size: 37
64063413 TCAGACGAAG
* * * *
64063423 TCTCCACATGAAGTTATCGGGTCTTA-CCGGAACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGG-ACATAA
*
64063460 TCTCCACACGTAGTCATCGAGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
64063497 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
64063534 TCTCCACACGTAGTCATCGGGTCTT
1 TCTCCACACGTAGTCATCGGGTCTT
64063559 TAGAGCTCGG
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
37 88 0.96
38 4 0.04
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
Found at i:64063755 original size:47 final size:47
Alignment explanation
Indices: 64063677--64064373 Score: 1106
Period size: 47 Copynumber: 14.6 Consensus size: 47
64063667 CCCTTCGGGA
* * * * * *
64063677 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64063724 CCTGTCACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64063771 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64063818 ATTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64063867 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64063914 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64063961 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64064008 CTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTAT--CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64064059 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64064106 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64064153 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64064200 CTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTAT--CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64064251 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64064298 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64064347 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
64064374 TATTCTTATA
Statistics
Matches: 604, Mismatches: 34, Indels: 24
0.91 0.05 0.04
Matches are distributed among these distances:
47 419 0.69
49 102 0.17
51 83 0.14
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64064070 original size:145 final size:141
Alignment explanation
Indices: 64063677--64064373 Score: 1106
Period size: 145 Copynumber: 4.9 Consensus size: 141
64063667 CCCTTCGGGA
* * * * * * * *
64063677 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
64063742 TTTCACATTCATCACATCGGCAATTAGGCCTTATCACATATATGCACTTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
64063807 GGCCATTAGGC
131 GGCCATTAGGC
* *
64063818 ATTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
64063883 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
64063948 TCGGCTATTAGGC
129 TCGGCCATTAGGC
*
64063961 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACACATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CAC--ATATAT
* *
64064026 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64064091 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
*
64064106 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
64064171 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATATACACTTTCACATTCATCA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTAT--CAC--ATATATACACTTTCACATTCATCA
* *
64064236 CATTGGCCATTCGGC
127 CATCGGCCATTAGGC
64064251 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
64064316 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
64064374 TATTCTTATA
Statistics
Matches: 517, Mismatches: 27, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
141 91 0.18
143 155 0.30
145 227 0.44
147 44 0.09
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:64064123 original size:192 final size:192
Alignment explanation
Indices: 64063677--64064373 Score: 1209
Period size: 192 Copynumber: 3.6 Consensus size: 192
64063667 CCCTTCGGGA
* * * * * * * *
64063677 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
64063742 TTTCACATTCATCACATCGGCAATTAGGCCTTATCACATATATGCACTTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* * * *
64063807 GGCCATTAGGCATTAT--CACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
64063867 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
64063932 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
64063997 GACCATTAGGCCTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
64064059 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
64064124 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
64064189 GGCCATTAGGCCTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
64064251 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
64064316 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
64 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
64064374 TATTCTTATA
Statistics
Matches: 485, Mismatches: 18, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
190 133 0.27
192 287 0.59
194 65 0.13
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (192 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:64071641 original size:73 final size:72
Alignment explanation
Indices: 64071503--64071639 Score: 179
Period size: 73 Copynumber: 1.9 Consensus size: 72
64071493 TATTACATAT
* * *
64071503 TTATTTTTTCCATCTACATTATGGGAGTGATGATTTCTAATATTATAAAATTAAATGATTATTTT
1 TTATTTTTTCCATCTACATTATGGGAGTGATAAATTCTAATATTATAAAATCAAA-GATTATTTT
64071568 AAATATCA
65 AAATATCA
* * *
64071576 TTATTTTTTTCATCTGCATTGTGGGTA-TGATAAATTCTAATATTATAAAATCAAA-ATTAATTT
1 TTATTTTTTCCATCTACATTATGGG-AGTGATAAATTCTAATATTATAAAATCAAAGATT-ATTT
64071639 T
64 T
64071640 TATTATATAT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
71 3 0.05
72 5 0.09
73 47 0.84
74 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.47
Consensus pattern (72 bp):
TTATTTTTTCCATCTACATTATGGGAGTGATAAATTCTAATATTATAAAATCAAAGATTATTTTA
AATATCA
Found at i:64077702 original size:23 final size:22
Alignment explanation
Indices: 64077666--64077708 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
64077656 ATAACCTTGA
64077666 TGCCATTAGAATGACTATTTTTT
1 TGCCATTAGAATGAC-ATTTTTT
64077689 TGCCATCTAG-ATGACATTTT
1 TGCCAT-TAGAATGACATTTT
64077709 GGCAAGAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 11 0.58
24 3 0.16
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (22 bp):
TGCCATTAGAATGACATTTTTT
Found at i:64078491 original size:15 final size:15
Alignment explanation
Indices: 64078471--64078500 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64078461 TTTAATCCTT
*
64078471 TATAAATTATAAAAA
1 TATAAACTATAAAAA
64078486 TATAAACTATAAAAA
1 TATAAACTATAAAAA
64078501 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:64080121 original size:13 final size:13
Alignment explanation
Indices: 64080103--64080144 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
64080093 CTGGAATTCC
64080103 TCACACGGGCGTG
1 TCACACGGGCGTG
64080116 TCACACGGGCGTG
1 TCACACGGGCGTG
*
64080129 TCACACGGCCGTG
1 TCACACGGGCGTG
64080142 TCA
1 TCA
64080145 ATTTGGCAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:64082056 original size:46 final size:47
Alignment explanation
Indices: 64081961--64082056 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
64081951 TACATTTATT
64081961 TTATTATAATCTAAGCCCAAAACTCCCTTTTAATTTCAATTCAATCC
1 TTATTATAATCTAAGCCCAAAACTCCCTTTTAATTTCAATTCAATCC
*
64082008 TTATTATAATTTAAGCCCAAAACTCCC-TTTAATTTCAATTCAATCC
1 TTATTATAATCTAAGCCCAAAACTCCCTTTTAATTTCAATTCAATCC
64082054 TTA
1 TTA
64082057 GTCTATTTAA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 22 0.46
47 26 0.54
ACGTcount: A:0.34, C:0.24, G:0.02, T:0.40
Consensus pattern (47 bp):
TTATTATAATCTAAGCCCAAAACTCCCTTTTAATTTCAATTCAATCC
Found at i:64082313 original size:20 final size:21
Alignment explanation
Indices: 64082290--64082329 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
64082280 TTTAGATTTT
*
64082290 ATTATTATTATT-TTGTTATC
1 ATTATCATTATTGTTGTTATC
64082310 ATTATCATTATTGTTGTTAT
1 ATTATCATTATTGTTGTTAT
64082330 TATCATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.62
Consensus pattern (21 bp):
ATTATCATTATTGTTGTTATC
Found at i:64082331 original size:18 final size:17
Alignment explanation
Indices: 64082288--64082344 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
64082278 AATTTAGATT
*
64082288 TTATTATTATTATTTTG
1 TTATTATTATCATTTTG
*
64082305 TTATCATTATCATTATTG
1 TTATTATTATCATT-TTG
* *
64082323 TTGTTATTATCATTTTT
1 TTATTATTATCATTTTG
64082340 TTATT
1 TTATT
64082345 TTTTTATTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
17 18 0.55
18 15 0.45
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (17 bp):
TTATTATTATCATTTTG
Found at i:64083197 original size:27 final size:27
Alignment explanation
Indices: 64083157--64083299 Score: 223
Period size: 27 Copynumber: 5.3 Consensus size: 27
64083147 TTGACAGGTG
64083157 TTCCTTTCATATTGCGCCACAAAGGCA
1 TTCCTTTCATATTGCGCCACAAAGGCA
* * **
64083184 TTCTTTTCATATTGTGCCACAAAGGTG
1 TTCCTTTCATATTGCGCCACAAAGGCA
*
64083211 TTCCTTTCATATTGTGCCACAAAGGCA
1 TTCCTTTCATATTGCGCCACAAAGGCA
*
64083238 TTCCTTTCATATTACGCCACAAAGGCA
1 TTCCTTTCATATTGCGCCACAAAGGCA
*
64083265 TTCCTTTTATATTGCGCCACAAAGGCA
1 TTCCTTTCATATTGCGCCACAAAGGCA
64083292 TTCCTTTC
1 TTCCTTTC
64083300 CTGACGTGTA
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (27 bp):
TTCCTTTCATATTGCGCCACAAAGGCA
Found at i:64083539 original size:19 final size:19
Alignment explanation
Indices: 64083511--64083552 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
64083501 AATTCGAAAC
*
64083511 AAAATAGAAAAATTTTGGAA
1 AAAATAG-AAAATTTGGGAA
64083531 AAAAT-GAAAATTTGGGAA
1 AAAATAGAAAATTTGGGAA
64083549 AAAA
1 AAAA
64083553 AAGGGTCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 15 0.71
19 1 0.05
20 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.21
Consensus pattern (19 bp):
AAAATAGAAAATTTGGGAA
Found at i:64085250 original size:12 final size:12
Alignment explanation
Indices: 64085233--64085270 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
64085223 AATATTTACC
64085233 TTTTTAGATTTT
1 TTTTTAGATTTT
*
64085245 TTTTTAAATTTT
1 TTTTTAGATTTT
64085257 CTTTTT-GATTTT
1 -TTTTTAGATTTT
64085269 TT
1 TT
64085271 AAAACTTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 2 0.09
12 16 0.70
13 5 0.22
ACGTcount: A:0.16, C:0.03, G:0.05, T:0.76
Consensus pattern (12 bp):
TTTTTAGATTTT
Found at i:64092856 original size:26 final size:26
Alignment explanation
Indices: 64092762--64092873 Score: 91
Period size: 26 Copynumber: 4.2 Consensus size: 26
64092752 TATGAAAAAG
* * * *
64092762 ATTTAACATAAATAAAATACAAAACA
1 ATTTAAAATAAATAATATATAACACA
* *
64092788 ATTTGAAATAAAATAAAATATAA-AGCA
1 ATTTAAAAT-AAATAATATATAACA-CA
* * * *
64092815 ATTCAAAAATAGATAATATATGACATA
1 ATT-TAAAATAAATAATATATAACACA
*
64092842 ATTTAAAATAAATAATATCTAACACA
1 ATTTAAAATAAATAATATATAACACA
64092868 ATTTAA
1 ATTTAA
64092874 GGTGAATAAT
Statistics
Matches: 68, Mismatches: 14, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
26 32 0.47
27 31 0.46
28 5 0.07
ACGTcount: A:0.60, C:0.08, G:0.04, T:0.29
Consensus pattern (26 bp):
ATTTAAAATAAATAATATATAACACA
Found at i:64093795 original size:9 final size:9
Alignment explanation
Indices: 64093781--64093817 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
64093771 AATATACAAG
64093781 AAAGATTGA
1 AAAGATTGA
64093790 AAAGATTGA
1 AAAGATTGA
*
64093799 AAAGATTTA
1 AAAGATTGA
64093808 AAAGATTGA
1 AAAGATTGA
64093817 A
1 A
64093818 GCCCTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.19, T:0.24
Consensus pattern (9 bp):
AAAGATTGA
Found at i:64097711 original size:120 final size:123
Alignment explanation
Indices: 64097577--64097903 Score: 349
Period size: 131 Copynumber: 2.6 Consensus size: 123
64097567 TATTTAGTCC
* * *
64097577 AACGAAAAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGC
1 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGC
* *
64097642 CTC-ATCTT-AG-AAA-ACACGAGTGAAATTCCAAAGGAATATTTGATTATTTTGAACA
66 CTCGCT-TTAAGTAAAGACACGAGTGAAATTCCAAAGGAACATTTGATTATTTTGAACA
* * * * *
64097697 AACGGGAAATCGAAACCCAACACGATAGGGCACTATTCACT-GAATTTCCAAACATCAAATATTG
1 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTC-CTCGAATTTCCAAACATCGAACATTG
* * *
64097761 CCTTCGCTTTAAAGAGTTTTTAAAGACATGAGTGAAATTCTAAAGGGACATTTGATTATTTTGAA
65 CC-TCGCTTT--A-AG----TAAAGACACGAGTGAAATTCCAAAGGAACATTTGATTATTTTGAA
64097826 CA
122 CA
* * * * *
64097828 AACGAGAAATTGCAACCCAGCACGATAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCGC
1 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGC
*
64097893 CTTCGTTTTAA
66 C-TCGCTTTAA
64097904 AGAATTTTTA
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
120 55 0.33
121 6 0.04
122 1 0.01
125 2 0.01
128 1 0.01
129 1 0.01
130 4 0.02
131 99 0.59
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (123 bp):
AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGC
CTCGCTTTAAGTAAAGACACGAGTGAAATTCCAAAGGAACATTTGATTATTTTGAACA
Found at i:64097895 original size:131 final size:131
Alignment explanation
Indices: 64097659--64097915 Score: 363
Period size: 131 Copynumber: 2.0 Consensus size: 131
64097649 TAGAAAACAC
* *
64097659 GAGTGAAATTCCAAAGGAATATTTGATTATTTTGAACAAACGGGAAATCGAAACCCAACACGATA
1 GAGTGAAATTCCAAAGGAACATTTGATTATTTTGAACAAACGAGAAATCGAAACCCAACACGATA
* * * * * *
64097724 GGGCACTATTCACTGAATTTCCAAACATCAAATATTGCCTTCGCTTTAAAGAGTTTTTAAAGACA
66 GGGCACGATTCACCGAATTGCCAAACATCAAACATCGCCTTCGCTTTAAAGAATTTTTAAAGACA
64097789 T
131 T
* * * * *
64097790 GAGTGAAATTCTAAAGGGACATTTGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
1 GAGTGAAATTCCAAAGGAACATTTGATTATTTTGAACAAACGAGAAATCGAAACCCAACACGATA
* *
64097855 GGGCACGATTC-CGCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAAGAATTTTTAAA
66 GGGCACGATTCAC-CGAATTGCCAAACATCAAACATCGCCTTCGCTTTAAAGAATTTTTAAA
64097916 TGAATAATTA
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
130 1 0.01
131 109 0.99
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (131 bp):
GAGTGAAATTCCAAAGGAACATTTGATTATTTTGAACAAACGAGAAATCGAAACCCAACACGATA
GGGCACGATTCACCGAATTGCCAAACATCAAACATCGCCTTCGCTTTAAAGAATTTTTAAAGACA
T
Found at i:64114714 original size:13 final size:12
Alignment explanation
Indices: 64114696--64114731 Score: 63
Period size: 12 Copynumber: 2.9 Consensus size: 12
64114686 GTTGTAACAT
64114696 TTTTTGTGATTTA
1 TTTTTGT-ATTTA
64114709 TTTTTGTATTTA
1 TTTTTGTATTTA
64114721 TTTTTGTATTT
1 TTTTTGTATTT
64114732 TGTTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.75
Consensus pattern (12 bp):
TTTTTGTATTTA
Found at i:64118826 original size:118 final size:118
Alignment explanation
Indices: 64118602--64118832 Score: 381
Period size: 118 Copynumber: 2.0 Consensus size: 118
64118592 TATTTCCGGT
64118602 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* *
64118667 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTTGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTTGGC
****
64118720 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* **
64118785 CCTACCCCGGTTACTCAGTCAGTCACGGTCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
64118833 ATGGAAAACA
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
118 104 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTTGGC
Found at i:64119815 original size:7 final size:6
Alignment explanation
Indices: 64119781--64119856 Score: 102
Period size: 6 Copynumber: 12.3 Consensus size: 6
64119771 ATATTTAACT
64119781 AAAAT- AAAATA AAAATA AAAGA-A AATAATA AATAATA AATAATA AAAATA
1 AAAATA AAAATA AAAATA AAA-ATA AA-AATA AA-AATA AA-AATA AAAATA
64119831 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
64119857 GATTGGGTTG
Statistics
Matches: 67, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
5 5 0.07
6 43 0.64
7 19 0.28
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:64127007 original size:10 final size:10
Alignment explanation
Indices: 64126951--64127013 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
64126941 AGGGAATGTG
64126951 TAAA-AAAAA
1 TAAATAAAAA
*
64126960 TAAATATAAA
1 TAAATAAAAA
*
64126970 TAGACATGAAAA
1 TA-A-ATAAAAA
64126982 TAAATAAAAA
1 TAAATAAAAA
* *
64126992 CAAAATAAGAA
1 -TAAATAAAAA
64127003 TAAATAAAAA
1 TAAATAAAAA
64127013 T
1 T
64127014 TATACAAGTG
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
9 4 0.10
10 21 0.50
11 10 0.24
12 7 0.17
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.19
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:64127215 original size:21 final size:21
Alignment explanation
Indices: 64127191--64127247 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
64127181 AAGAAAATAG
*
64127191 TTAAAAAATTTAAACTTT-GT
1 TTAAAAAATTTAAACTTTCCT
*
64127211 TTTAAAAATTTAAACTTTCCT
1 TTAAAAAATTTAAACTTTCCT
64127232 TTAAAAAGACTTTAAA
1 TTAAAAA-A-TTTAAA
64127248 AAAATAGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.55
21 7 0.23
22 1 0.03
23 6 0.19
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.42
Consensus pattern (21 bp):
TTAAAAAATTTAAACTTTCCT
Found at i:64127219 original size:20 final size:20
Alignment explanation
Indices: 64127194--64127238 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
64127184 AAAATAGTTA
**
64127194 AAAAATTTAAACTTTGTTTT
1 AAAAATTTAAACTTTCCTTT
64127214 AAAAATTTAAACTTTCCTTT
1 AAAAATTTAAACTTTCCTTT
64127234 AAAAA
1 AAAAA
64127239 GACTTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (20 bp):
AAAAATTTAAACTTTCCTTT
Found at i:64127438 original size:156 final size:154
Alignment explanation
Indices: 64127193--64127598 Score: 527
Period size: 156 Copynumber: 2.6 Consensus size: 154
64127183 GAAAATAGTT
* * *
64127193 AAAAAATTTAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAAAGACTTTAAAAAAATAGATT
1 AAAAAATTCAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGAC--TAAAAAAATAGATT
*
64127258 TTTA-TTTTCAAAATCTAAATTTTCTCCTTTTTTTT-AAAAAAATAA-CTAATTTTCTTATAGAT
64 TTTATTTTTCAAAATCTAAATTTTCT-CTTTTTTTTGAAAAAAA-AAGCTAATTTTCTTAAAGAT
* *
64127320 TAAAGCTTTTATTTTAAAATAGTTGAAA
127 TAAAGCTTTTACTTTAAAATACTTGAAA
* *
64127348 AAAAAATTCAAATTTTTATTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAAGTAGATT
1 AAAAAATTCAAA-CTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAA-TAGATT
* * * *
64127413 TTTATTTTTCAAAATCTAAAATTTCTCTTTTTTTTGAAAAAAAAATGTTATTTTTCTTAAATATT
64 TTTATTTTTCAAAATCTAAATTTTCTCTTTTTTTTGAAAAAAAAA-GCTAATTTTCTTAAAGATT
*
64127478 AAAGCTTTTACTTTGAAATACTTGAAA
128 AAAGCTTTTACTTTAAAATACTTGAAA
* * * *
64127505 AAAAAA-TCAAAACTTTGTTTTAAAATTTTAAAATTTCCTTTAAAATAAC-AAAAAAACAAATTT
1 AAAAAATTC-AAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAATAGATTT
*
64127568 TTATTTGTT-AAAATTTAAATTTTCTCTTTTT
65 TTATTT-TTCAAAATCTAAATTTTCTCTTTTT
64127599 AAAAAAATTC
Statistics
Matches: 222, Mismatches: 21, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
154 39 0.18
155 41 0.18
156 95 0.43
157 47 0.21
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (154 bp):
AAAAAATTCAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAATAGATTTT
TATTTTTCAAAATCTAAATTTTCTCTTTTTTTTGAAAAAAAAAGCTAATTTTCTTAAAGATTAAA
GCTTTTACTTTAAAATACTTGAAA
Found at i:64133807 original size:21 final size:21
Alignment explanation
Indices: 64133781--64133820 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64133771 CACTTGACAT
64133781 AGGGGCACACGCCCGTGTGAA
1 AGGGGCACACGCCCGTGTGAA
* *
64133802 AGGGGCACATGCCTGTGTG
1 AGGGGCACACGCCCGTGTG
64133821 GACAATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGAA
Found at i:64135070 original size:46 final size:46
Alignment explanation
Indices: 64134991--64135162 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
64134981 TGTCTCATGT
*
64134991 CGATGCCATGTCCCAGACATGGTCTTACCCTGAC-TATCATC-CCATAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTTAT-ATCTCCA-AGC
* * * *
64135039 CGATGCATATCCCAGACATGTCTTACACTGACTTATGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGACTTATATCTCCAAGC
* ** *
64135085 CGATGCATGTCCCAGACATGTCTTACACTAGCAC-T-TGTCTTGATGC
1 CGATGCATGTCCCAGACATGTCTTACACT-G-ACTTATATCTCCAAGC
64135131 CGATGCCATGTCCCAGACATGGTCTTACACTG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTG
64135163 GCTCTCATAA
Statistics
Matches: 110, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
46 58 0.53
47 35 0.32
48 17 0.15
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTTATATCTCCAAGC
Found at i:64135202 original size:140 final size:140
Alignment explanation
Indices: 64134950--64135207 Score: 329
Period size: 140 Copynumber: 1.8 Consensus size: 140
64134940 GTGCTGACGC
* * * *
64134950 CATGTCCTAGACACGATTTTACACTAGCTCATGTCTCATGTCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACACGATCTTACACTAGCACATGTCTCATGCCGATGCCATGTCCCAGACATGGTC
* ** *
64135015 TTACCCTGACTATCATCCCATAGCCGATGCATATCCCAGACATGTCTTACACTGACTTATGTCTC
66 TTACACTGACTATCATAACATAGCCGATGCATATCCCAGACACGTCTTACACTGACTTATGTCTC
64135080 GAGGCCGATG
131 GAGGCCGATG
* * *
64135090 CATGTCCCAGACATG-TCTTACACTAGCACTTGTCTTGATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACACGATCTTACACTAGCACATGTC-TCATGCCGATGCCATGTCCCAGACATGGT
* * ** * * * *
64135154 CTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCCGACACGTCTTACACT
65 CTTACACTGACTATCATAACATAGCCGATGCATATCCCAGACACGTCTTACACT
64135208 AGCCCACAAT
Statistics
Matches: 98, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
139 16 0.16
140 82 0.84
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACACGATCTTACACTAGCACATGTCTCATGCCGATGCCATGTCCCAGACATGGTC
TTACACTGACTATCATAACATAGCCGATGCATATCCCAGACACGTCTTACACTGACTTATGTCTC
GAGGCCGATG
Found at i:64136969 original size:3 final size:3
Alignment explanation
Indices: 64136963--64136994 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
64136953 TGATGAGTTT
64136963 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
64136995 GCACTTTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:64170264 original size:44 final size:44
Alignment explanation
Indices: 64170211--64170741 Score: 388
Period size: 44 Copynumber: 11.7 Consensus size: 44
64170201 TACCATGGCG
*
64170211 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACACA
* * * * * *
64170255 AACCTTATCTCCCTAAAATTGCAGTGGAGCAGGTTAAAAATAAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT--AAAGACACA
* * * * *
64170301 AATCTTATCTCCTTAAAGTTACAGTGGAGTAGATTGAAGACAAGCTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAC-A-C-A
*
64170348 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACA
1 --AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACACA
* * * **
64170394 AACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAA-TTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGACACA
* * * * * *
64170438 AGTTTTATCTCCCTAAAGTTGCA-TGGAGCAGACTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACA-CA
* * * *
64170482 AATCTTATCTCTCTGAAATTGCAGTAGAGCAGATTAAAG-CTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAC-ACA
* * *
64170526 AATCTTATCTGCCTGAAGTTGCAGTGGAACAGCTTAAAGCTACAAATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--AC-----ACA
* * * * ** *
64170577 AATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACA-CA
* * ** * *
64170622 AATCTTATCTCTCTAAAGTCACAGTAGAGCAGATTAAAG-CTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAC-ACA
* * * * *
64170666 AACCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAA-ATAGAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGACA-CA
*
64170711 AATCTTATCTCTCTGAAGTTGCAGTGGAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA
64170742 ATTGCAGTGG
Statistics
Matches: 380, Mismatches: 83, Indels: 47
0.75 0.16 0.09
Matches are distributed among these distances:
42 2 0.01
43 11 0.03
44 173 0.46
45 83 0.22
46 38 0.10
47 3 0.01
48 1 0.00
49 36 0.09
51 33 0.09
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACACA
Found at i:64170534 original size:88 final size:89
Alignment explanation
Indices: 64170211--64170741 Score: 394
Period size: 89 Copynumber: 5.9 Consensus size: 89
64170201 TACCATGGCG
* * * *
64170211 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAAGAC-ACAAACCTTATCTCCCTAAAAT
1 AATCTTATCTCCCTGAAATTGCAGTGGAGCAGATTGAAAG-CTACAAATCTTATCTCCCTAAAGT
* *
64170274 TGCAGTGGAGCAGGTTAAAAATAAACA
65 TGCAGTGGAGCAGATTAAAGAT--ACA
* * * * *
64170301 AATCTTATCT-CCTTAAAGTTACAGTGGAGTAGATTGAAGACAAGCTACGAATCTTATCTCCCTG
1 AATCTTATCTCCCTGAAA-TTGCAGTGGAGCAGATT---GA-AAGCTACAAATCTTATCTCCCTA
**
64170365 AAGTTGCAGTGGAGCAGATTAAAGCCACA
61 AAGTTGCAGTGGAGCAGATTAAAGATACA
* * * * * * *
64170394 AACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAA-TTACAAGTTTTATCTCCCTAAAGTT
1 AATCTTATCTCCCTGAAATTGCAGTGGAGCAGATTGAAAGCTACAAATCTTATCTCCCTAAAGTT
* *
64170458 GCA-TGGAGCAGACTGAAGATAGCA
66 GCAGTGGAGCAGATTAAAGATA-CA
* * * * *
64170482 AATCTTATCTCTCTGAAATTGCAGTAGAGCAGATT-AAAGCTATAAATCTTATCTGCCTGAAGTT
1 AATCTTATCTCCCTGAAATTGCAGTGGAGCAGATTGAAAGCTACAAATCTTATCTCCCTAAAGTT
* *
64170546 GCAGTGGAACAGCTTAAAGCTACAAATTACA
66 GCAGTGGAGCAGATTAAAG------A-TACA
* * * * * * * *
64170577 AATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCG-AAGATAGCAAATCTTATCTCTCTAAAGT
1 AATCTTATCTCCCTGAAATTGCAGTGGAGCAGATTGAAAGCTA-CAAATCTTATCTCCCTAAAGT
** * * *
64170641 CACAGTAGAGCAGATTAAAGCTATA
65 TGCAGTGGAGCAGATTAAAGATACA
* * * * * * * *
64170666 AACCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAA-ATAGAAAATCTTATCTCTCTGAAGT
1 AATCTTATCTCCCTGAAATTGCAGTGGAGCAGATTGAAAGCTA-CAAATCTTATCTCCCTAAAGT
64170730 TGCAGTGGAGCA
65 TGCAGTGGAGCA
64170742 ATTGCAGTGG
Statistics
Matches: 348, Mismatches: 72, Indels: 43
0.75 0.16 0.09
Matches are distributed among these distances:
87 17 0.05
88 76 0.22
89 83 0.24
90 28 0.08
93 25 0.07
94 7 0.02
95 78 0.22
96 34 0.10
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (89 bp):
AATCTTATCTCCCTGAAATTGCAGTGGAGCAGATTGAAAGCTACAAATCTTATCTCCCTAAAGTT
GCAGTGGAGCAGATTAAAGATACA
Found at i:64170587 original size:183 final size:180
Alignment explanation
Indices: 64170211--64170572 Score: 412
Period size: 183 Copynumber: 2.0 Consensus size: 180
64170201 TACCATGGCG
*
64170211 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACACAAACCTTATCTCCCTAAAATTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAAGACACAAACCTTATCTCCCTAAAATTG
** * * *
64170276 CAGTGGAGCAGGTTAAAAATAAACAAATCTTATCTCCTTAAAGTTACAGTGGAGTAGATTGAAGA
66 CAGTGGAGCAGACTAAAAATAAACAAATCTTATCTCCTGAAAGTTACAGTAGAGCAGATT--A-A
* *
64170341 CAAGCTACGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACA
128 CAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCACA
* ** ** *** *
64170394 AACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAA-TTACAAGTTTTATCTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGACT-AAAGACACAAACCTTATCTCCCTAAAATT
* * * *
64170458 GCA-TGGAGCAGACTGAAGAT-AGCAAATCTTATCTCTCTGAAA-TTGCAGTAGAGCAGATT-A-
65 GCAGTGGAGCAGACTAAAAATAAACAAATCTTATCTC-CTGAAAGTTACAGTAGAGCAGATTAAC
* * * *
64170518 AAGCTATAAATCTTATCTGCCTGAAGTTGCAGTGGAACAGCTTAAAGCTACA
129 AAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCACA
64170570 AAT
1 AAT
64170573 TACAAATCTT
Statistics
Matches: 151, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
176 48 0.32
177 1 0.01
181 28 0.19
182 18 0.12
183 53 0.35
184 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (180 bp):
AATCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAAGACACAAACCTTATCTCCCTAAAATTG
CAGTGGAGCAGACTAAAAATAAACAAATCTTATCTCCTGAAAGTTACAGTAGAGCAGATTAACAA
GCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCACA
Found at i:64170653 original size:140 final size:132
Alignment explanation
Indices: 64170211--64170733 Score: 458
Period size: 139 Copynumber: 3.8 Consensus size: 132
64170201 TACCATGGCG
* * * * * * *
64170211 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAC-ACAAACCTTATCTCCCTAAAATT
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAG-CTATAAACCTTATCTCCCTGAAGTT
* * * * * * * * *
64170275 GCAGTGGAGCAGGTTAAAAATAAACAAATCTTATCTCCTTAAAGTTACAGTGGAGTAGATTGAAG
65 GCAGTGGAACAGCTT-GAAAT-TACAAATCTTATCTCCCTAAAGTTGCA-TAGAGCAGACTGAAG
*
64170340 ACAAGCTA
127 A-TAGC-A
* * * * *
64170348 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTGAAGT
1 --AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGT
* * * * * *
64170413 TGCAATGGAGCAGGTTGAAATTACAAGTTTTATCTCCCTAAAGTTGCATGGAGCAGACTGAAGAT
64 TGCAGTGGAACAGCTTGAAATTACAAATCTTATCTCCCTAAAGTTGCATAGAGCAGACTGAAGAT
64170478 AGCA
129 AGCA
* *
64170482 AATCTTATCTCTCTGAAA-TTGCAGTAGAGCAGATTAAAGCTATAAATCTTATCTGCCTGAAGTT
1 AATCTTATCTCTCT-AAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTT
* * * *
64170546 GCAGTGGAACAGCTTAAAGCTACAAATTACAAATCTTATCTCTCTGAAGTTGTAGTAGAGTAGA-
65 GCAGTGGAACAGCTT---G----AAATTACAAATCTTATCTCCCTAAAGTTGCA-TAGAGCAGAC
64170610 TCGAAGATAGCA
122 T-GAAGATAGCA
** *
64170622 AATCTTATCTCTCTAAAGTCACAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTA
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTG
** * * * * *
64170687 CAGTGGAGTAGATTGAAAATAGAAAATCTTATCTCTCTGAAGTTGCA
66 CAGTGGAACAGCTTGAAATTA-CAAATCTTATCTCCCTAAAGTTGCA
64170734 GTGGAGCAAT
Statistics
Matches: 330, Mismatches: 41, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
132 66 0.20
133 7 0.02
134 24 0.07
135 4 0.01
136 14 0.04
137 23 0.07
138 5 0.02
139 103 0.31
140 84 0.25
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (132 bp):
AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTG
CAGTGGAACAGCTTGAAATTACAAATCTTATCTCCCTAAAGTTGCATAGAGCAGACTGAAGATAG
CA
Found at i:64170748 original size:14 final size:15
Alignment explanation
Indices: 64170729--64170760 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
64170719 CTCTCTGAAG
64170729 TTGCAGTGGAGCA-A
1 TTGCAGTGGAGCAGA
64170743 TTGCAGTGGAGCAGA
1 TTGCAGTGGAGCAGA
64170758 TTG
1 TTG
64170761 AAGCTACGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.25, C:0.12, G:0.38, T:0.25
Consensus pattern (15 bp):
TTGCAGTGGAGCAGA
Found at i:64178659 original size:17 final size:18
Alignment explanation
Indices: 64178627--64178663 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
64178617 CCGTGTAGAC
64178627 TACCCGCGTGGGCCCACA
1 TACCCGCGTGGGCCCACA
*
64178645 TACCCGTGT-GGCCCACA
1 TACCCGCGTGGGCCCACA
64178662 TA
1 TA
64178664 GCCCAATTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.19, C:0.41, G:0.24, T:0.16
Consensus pattern (18 bp):
TACCCGCGTGGGCCCACA
Found at i:64179939 original size:2 final size:2
Alignment explanation
Indices: 64179927--64179957 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
64179917 TCATATTGAG
*
64179927 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64179958 CAGATATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:64182910 original size:19 final size:19
Alignment explanation
Indices: 64182883--64182919 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
64182873 GATATCATTT
*
64182883 AAAAGAGTTTAGTGCTCAA
1 AAAAAAGTTTAGTGCTCAA
64182902 AAAAAAGTTTAGTGCTCA
1 AAAAAAGTTTAGTGCTCA
64182920 GAGGCCTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.27
Consensus pattern (19 bp):
AAAAAAGTTTAGTGCTCAA
Found at i:64183410 original size:32 final size:32
Alignment explanation
Indices: 64183371--64183454 Score: 98
Period size: 32 Copynumber: 2.6 Consensus size: 32
64183361 TATTGAAATT
**
64183371 AGTTTGTTGGATTTTGAAATTATTATGTCTTTA
1 AGTTTGTTGGATAGTGAAATTATTATGT-TTTA
* *
64183404 A-TTTGTTAGATAGTGAATTTATTATGTTTTA
1 AGTTTGTTGGATAGTGAAATTATTATGTTTTA
* *
64183435 AGCTTGTTGGATAATGAAAT
1 AGTTTGTTGGATAGTGAAAT
64183455 AATTGAAAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
31 5 0.12
32 36 0.86
33 1 0.02
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (32 bp):
AGTTTGTTGGATAGTGAAATTATTATGTTTTA
Found at i:64185726 original size:23 final size:22
Alignment explanation
Indices: 64185623--64185730 Score: 123
Period size: 21 Copynumber: 5.0 Consensus size: 22
64185613 CCTGATCAGT
* *
64185623 ATACGACACATAAAGTGCCT-A
1 ATACGACACATGAGGTGCCTGA
*
64185644 AAACGACACATGAGGTGCCTG-
1 ATACGACACATGAGGTGCCTGA
*
64185665 ATACGACACACGAGGTGCCTG-
1 ATACGACACATGAGGTGCCTGA
*
64185686 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATGAGGTGCCTG-A
* *
64185709 ATACGACACATAAAGTGCCTGA
1 ATACGACACATGAGGTGCCTGA
64185731 TCGATAAAGC
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
21 57 0.75
22 1 0.01
23 18 0.24
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (22 bp):
ATACGACACATGAGGTGCCTGA
Found at i:64185728 original size:44 final size:42
Alignment explanation
Indices: 64185623--64185731 Score: 146
Period size: 42 Copynumber: 2.5 Consensus size: 42
64185613 CCTGATCAGT
* * *
64185623 ATACGACACATAAAGTGCCTAAAACGACACATGAGGTGCCTG
1 ATACGACACATAAAGTGCCTGATACGACACACGAGGTGCCTG
** *
64185665 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTGATACGACACACGAGGTGCCTG
64185707 AAATACGACACATAAAGTGCCTGAT
1 --ATACGACACATAAAGTGCCTGAT
64185732 CGATAAAGCC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 36 0.64
44 20 0.36
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.17
Consensus pattern (42 bp):
ATACGACACATAAAGTGCCTGATACGACACACGAGGTGCCTG
Found at i:64186129 original size:15 final size:14
Alignment explanation
Indices: 64186105--64186144 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
64186095 TATATATTAT
64186105 ATAATTCAATCAAA
1 ATAATTCAATCAAA
*
64186119 ATAATTTCAATCAAT
1 ATAA-TTCAATCAAA
64186134 ATAAATTCAAT
1 AT-AATTCAAT
64186145 AAATTCATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 17 0.74
16 2 0.09
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATTCAATCAAA
Found at i:64187420 original size:5 final size:5
Alignment explanation
Indices: 64187412--64187443 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
64187402 TCTTTAGTTT
64187412 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
64187444 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:64190787 original size:19 final size:19
Alignment explanation
Indices: 64190748--64190787 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
64190738 ACAAGCGAAA
*
64190748 GTTAGATAATTTGTCGCAT
1 GTTAGATAATTTGTCACAT
* *
64190767 GTTAGATGATTTGTCATAT
1 GTTAGATAATTTGTCACAT
64190786 GT
1 GT
64190788 GGAGCTAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.45
Consensus pattern (19 bp):
GTTAGATAATTTGTCACAT
Found at i:64191385 original size:21 final size:23
Alignment explanation
Indices: 64191360--64191404 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
64191350 TTTATATGAC
64191360 AAAAACAGA-ACAAATCG-TGAAG
1 AAAAA-AGACACAAATCGATGAAG
64191382 AAAAAAGACTACAAATCGATGAA
1 AAAAAAGAC-ACAAATCGATGAA
64191405 CTAGATGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 3 0.15
22 5 0.25
23 8 0.40
24 4 0.20
ACGTcount: A:0.60, C:0.13, G:0.16, T:0.11
Consensus pattern (23 bp):
AAAAAAGACACAAATCGATGAAG
Found at i:64196552 original size:75 final size:75
Alignment explanation
Indices: 64196429--64196578 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 75
64196419 GTGTTGAATG
*
64196429 ATTTATGAGAATGAATGCTTTATGCTTGATAAATGTATGCTTAATGTTGTGAATTGTTCAGTAAT
1 ATTTATGAGAATGAATGCCTTATGCTTGATAAATGTATGCTTAATGTTGTGAATTGTTCAGTAAT
64196494 ACCTCATAAC
66 ACCTCATAAC
* *
64196504 ATTTATGAGAATGAATGCCTTATGCTTGATAAATGTATGTTTAATGTTGTGAATTGTTCGGTAAT
1 ATTTATGAGAATGAATGCCTTATGCTTGATAAATGTATGCTTAATGTTGTGAATTGTTCAGTAAT
*
64196569 ACCTCGTAAC
66 ACCTCATAAC
64196579 CATACTCTAG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (75 bp):
ATTTATGAGAATGAATGCCTTATGCTTGATAAATGTATGCTTAATGTTGTGAATTGTTCAGTAAT
ACCTCATAAC
Found at i:64197647 original size:19 final size:21
Alignment explanation
Indices: 64197619--64197660 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
64197609 TTAATTTCAA
*
64197619 TTTTATTTTCTTATTTT-TTG
1 TTTTATTTTCTAATTTTATTG
64197639 TTTTA-TTTCTAATTTTATTG
1 TTTTATTTTCTAATTTTATTG
64197659 TT
1 TT
64197661 ATTTTTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.76
Consensus pattern (21 bp):
TTTTATTTTCTAATTTTATTG
Found at i:64197668 original size:32 final size:32
Alignment explanation
Indices: 64197607--64197668 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
64197597 TATCATTTAT
*
64197607 TTTTAATTTCAATTTTATTTTCTTATTTTTTG
1 TTTTAATTTCAATTTTATTTTATTATTTTTTG
64197639 TTTT-ATTTCTAATTTTATTGTTATT-TTTTT
1 TTTTAATTTC-AATTTTATT-TTATTATTTTT
64197669 AGACTTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 5 0.19
32 18 0.67
33 4 0.15
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (32 bp):
TTTTAATTTCAATTTTATTTTATTATTTTTTG
Found at i:64199519 original size:30 final size:30
Alignment explanation
Indices: 64199483--64199540 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
64199473 AAGCCTTTTC
64199483 CCACACGGGCTGAG-CAAACGCCCATGTGAT
1 CCACACGGGCTG-GCCAAACGCCCATGTGAT
*
64199513 CCACACGGGCTGGCCACACGCCCATGTG
1 CCACACGGGCTGGCCAAACGCCCATGTG
64199541 CTAGCCCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.22, C:0.38, G:0.28, T:0.12
Consensus pattern (30 bp):
CCACACGGGCTGGCCAAACGCCCATGTGAT
Found at i:64200926 original size:20 final size:19
Alignment explanation
Indices: 64200886--64200922 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
64200876 ATCCAAACAA
64200886 CAGAAAAGTAAATCATTTC
1 CAGAAAAGTAAATCATTTC
64200905 CAGAAAAGTAAATCATTT
1 CAGAAAAGTAAATCATTT
64200923 TCCATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.27
Consensus pattern (19 bp):
CAGAAAAGTAAATCATTTC
Found at i:64203140 original size:47 final size:48
Alignment explanation
Indices: 64203072--64203382 Score: 197
Period size: 47 Copynumber: 6.6 Consensus size: 48
64203062 TTTGTGTGCT
64203072 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* *
64203118 AGTGTAAGACCATGTCTGGGACATGGCATTGG---CATTGA-GACGATAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-ATGA-G--AGCC
* * * *
64203166 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGA-GATGTA-AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATG-AGAGCC
*** * * * * *
64203212 AGTGTAAGA-CATGTCTAAAACAT-GCATCGACTACATGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * **
64203256 AGTTTAAGACCATATCTGGGACATGGCATCGG-CACAGATACGTGAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACA-TTA--TGAGAGCC
* * * **
64203306 AGTGTAAGACCATGTTTGGGACATGGCATCTGCTTA-A-CGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CACATTATGAGAGCC
64203353 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
64203383 AGCATTATAC
Statistics
Matches: 206, Mismatches: 36, Indels: 45
0.72 0.13 0.16
Matches are distributed among these distances:
44 9 0.04
45 20 0.10
46 58 0.28
47 62 0.30
48 20 0.10
49 2 0.01
50 33 0.16
51 1 0.00
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:64212893 original size:7 final size:7
Alignment explanation
Indices: 64212881--64212906 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
64212871 AATAATTAAT
64212881 TAATTTA
1 TAATTTA
64212888 TAATTTA
1 TAATTTA
64212895 TAATTTA
1 TAATTTA
64212902 TAATT
1 TAATT
64212907 ATTTTGTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TAATTTA
Found at i:64220059 original size:24 final size:24
Alignment explanation
Indices: 64220004--64220059 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
64219994 CTTATCTGGG
* *
64220004 CTATAACAGGAAACTCATGAGAGT
1 CTATAACAAGAAACTCATGAGAGC
* * * *
64220028 TTAAAACAAGAAGCTCATGTGAGC
1 CTATAACAAGAAACTCATGAGAGC
64220052 CTATAACA
1 CTATAACA
64220060 GGTAACTTCG
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (24 bp):
CTATAACAAGAAACTCATGAGAGC
Found at i:64220193 original size:26 final size:26
Alignment explanation
Indices: 64220134--64220194 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
64220124 GCTAATATTG
* **
64220134 GGAAGCTCACAAAGAGCCTTTAATTG
1 GGAAGCTCACAAAGAGCCTATAATCA
64220160 GGAAGCTCACAAAGAGCC-ATATATCA
1 GGAAGCTCACAAAGAGCCTATA-ATCA
*
64220186 GGATGCTCA
1 GGAAGCTCA
64220195 TAAGAGCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 2 0.07
26 28 0.93
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCTATAATCA
Found at i:64221563 original size:22 final size:22
Alignment explanation
Indices: 64221533--64221580 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
64221523 ATCAAGGTCA
* *
64221533 TGTCTCAAGACATAAACTCCTT
1 TGTCCCAAGACATAAACTCATT
*
64221555 TGTCCCAAGACATACACTCATT
1 TGTCCCAAGACATAAACTCATT
64221577 TGTC
1 TGTC
64221581 TTGAAACATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (22 bp):
TGTCCCAAGACATAAACTCATT
Found at i:64225310 original size:30 final size:29
Alignment explanation
Indices: 64225276--64225357 Score: 119
Period size: 30 Copynumber: 2.8 Consensus size: 29
64225266 ATTTTCAGAC
* *
64225276 CTAGGGGTAAAATTGTCATTTTGTGGAAGT
1 CTAGGGGCAAAATGGTCATTTTGTGGAA-T
64225306 CTAGGGGCAAAATGGTCATTTTGTGGAAT
1 CTAGGGGCAAAATGGTCATTTTGTGGAAT
* *
64225335 CTAAGGACAAAATGGTCATTTTG
1 CTAGGGGCAAAATGGTCATTTTG
64225358 CCCAATTATG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
29 22 0.46
30 26 0.54
ACGTcount: A:0.29, C:0.10, G:0.28, T:0.33
Consensus pattern (29 bp):
CTAGGGGCAAAATGGTCATTTTGTGGAAT
Found at i:64225347 original size:29 final size:30
Alignment explanation
Indices: 64225284--64225357 Score: 114
Period size: 29 Copynumber: 2.5 Consensus size: 30
64225274 ACCTAGGGGT
* * *
64225284 AAAATTGTCATTTTGTGGAAGTCTAGGGGC
1 AAAATGGTCATTTTGTGGAAGTCTAAGGAC
64225314 AAAATGGTCATTTTGTGGAA-TCTAAGGAC
1 AAAATGGTCATTTTGTGGAAGTCTAAGGAC
64225343 AAAATGGTCATTTTG
1 AAAATGGTCATTTTG
64225358 CCCAATTATG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 22 0.54
30 19 0.46
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (30 bp):
AAAATGGTCATTTTGTGGAAGTCTAAGGAC
Found at i:64225839 original size:46 final size:46
Alignment explanation
Indices: 64225737--64225873 Score: 195
Period size: 46 Copynumber: 2.9 Consensus size: 46
64225727 ACATTATGAG
64225737 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAA
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATTGAGACGAA
* * *
64225785 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGC-TTCGAGATGTA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATT-GAGACGAA
*
64225831 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTTGAGA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCA-TTGAGA
64225874 ACGGCTTTAC
Statistics
Matches: 81, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
45 2 0.02
46 47 0.58
47 18 0.22
48 14 0.17
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACGAA
Found at i:64240218 original size:28 final size:28
Alignment explanation
Indices: 64240162--64240231 Score: 65
Period size: 28 Copynumber: 2.5 Consensus size: 28
64240152 CATTTAAGCA
*
64240162 TAAAATATAAAT-TA-ATTTAAAATTATAT
1 TAAAATA-AAATATAGA-TTAAAACTATAT
*
64240190 TAAAATCAAGATATAGATTAAAACT-TAT
1 TAAAAT-AAAATATAGATTAAAACTATAT
*
64240218 TTAAATAAAATATA
1 TAAAATAAAATATA
64240232 ATAATATAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
27 7 0.20
28 17 0.49
29 10 0.29
30 1 0.03
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (28 bp):
TAAAATAAAATATAGATTAAAACTATAT
Found at i:64242925 original size:52 final size:51
Alignment explanation
Indices: 64242867--64243021 Score: 175
Period size: 52 Copynumber: 3.0 Consensus size: 51
64242857 GACGGAAAAG
* * *
64242867 ATGTGATATGTGCTTCCATATAAGACCATAGCTAGGTTATGGCATCGGTACA
1 ATGTGATATGTG-TTCCGTATAAGACCATAGCTGGGATATGGCATCGGTACA
* * * * ***
64242919 ATGTGATTTGTGTTCCCGTATAAGACCACAACTGGGCTATGGCATCGGTGTG
1 ATGTGATATGTGTT-CCGTATAAGACCATAGCTGGGATATGGCATCGGTACA
*
64242971 ATGTGATAATGTGATTCCGTATAAGACCATAGATGGGATATGGCATCGGTA
1 ATGTGAT-ATGTG-TTCCGTATAAGACCATAGCTGGGATATGGCATCGGTA
64243022 TGTTATGTGA
Statistics
Matches: 85, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
51 2 0.02
52 47 0.55
53 34 0.40
54 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (51 bp):
ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTACA
Found at i:64248653 original size:26 final size:25
Alignment explanation
Indices: 64248616--64248770 Score: 74
Period size: 26 Copynumber: 6.2 Consensus size: 25
64248606 GGGCTATCTG
64248616 GAGC-TCCTGATTGAAGGCTCTTTGT
1 GAGCTTCCTGATT-AAGGCTCTTTGT
* ***
64248641 GAGCTTCTTGATTAAAAATTCTTTGT
1 GAGCTTCCTGATT-AAGGCTCTTTGT
* * *
64248667 GAACTTCCTGATTATGGCTC-TTAT
1 GAGCTTCCTGATTAAGGCTCTTTGT
* **
64248691 GAGCTTCCT-ATTATATTGC-C-CGGAT
1 GAGCTTCCTGATTA-A-GGCTCTTTG-T
* * *
64248716 AAGCTTCGT-AAT-AGGC-CATTTGT
1 GAGCTTCCTGATTAAGGCTC-TTTGT
64248739 GAGCTTCCTGATTAATGGCTCTTTGT
1 GAGCTTCCTGATTAA-GGCTCTTTGT
64248765 GAGCTT
1 GAGCTT
64248771 TCTATTATAT
Statistics
Matches: 93, Mismatches: 27, Indels: 19
0.67 0.19 0.14
Matches are distributed among these distances:
22 3 0.03
23 13 0.14
24 15 0.16
25 20 0.22
26 41 0.44
27 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (25 bp):
GAGCTTCCTGATTAAGGCTCTTTGT
Found at i:64250995 original size:89 final size:86
Alignment explanation
Indices: 64250828--64251047 Score: 214
Period size: 89 Copynumber: 2.5 Consensus size: 86
64250818 CTTAATGGTG
* * * *
64250828 TAAAAAGCCCTCAAACTTTTTCAAAAAAGCAATTAAGCCCTTCTTTTTTTTTGCACTCAATTGAG
1 TAAAAAGCCCTCAAACTTTTTAAAAAAAACAATTAAGCCCTGC-TTTTTTTTGCACTCAATAGAG
*
64250893 CACTTGAATTTTCAAAATGCAT
65 CACTTGAACTTTCAAAATGCAT
64250915 TAAAAAGGCCCTCAAACTTCTTTTAAAAAAAAACAATTAAGCTCCTGC-TTTTTTT-CACTCAAC
1 TAAAAA-GCCCTCAAAC-T-TTTT-AAAAAAAACAATTAAGC-CCTGCTTTTTTTTGCACTCAA-
* *
64250978 TAG-GTATTTGAACTTTCAAAATGCAT
60 TAGAGCACTTGAACTTTCAAAATGCAT
* ** * * **
64251004 CAAAAA-AACTCAAAATTTTTCAAAAAAGTAATTAAGCCTCTGCT
1 TAAAAAGCCCTCAAACTTTTTAAAAAAAACAATTAAGCC-CTGCT
64251048 CTTATTAAAA
Statistics
Matches: 111, Mismatches: 14, Indels: 18
0.78 0.10 0.13
Matches are distributed among these distances:
83 1 0.01
84 18 0.16
85 4 0.04
86 1 0.01
87 12 0.11
88 10 0.09
89 33 0.30
90 13 0.12
91 15 0.14
92 4 0.04
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (86 bp):
TAAAAAGCCCTCAAACTTTTTAAAAAAAACAATTAAGCCCTGCTTTTTTTTGCACTCAATAGAGC
ACTTGAACTTTCAAAATGCAT
Found at i:64251067 original size:9 final size:9
Alignment explanation
Indices: 64251053--64251165 Score: 75
Period size: 9 Copynumber: 12.0 Consensus size: 9
64251043 CTGCTCTTAT
64251053 TAAAAATTA
1 TAAAAATTA
64251062 TAAAAAAATTA
1 T--AAAAATTA
*
64251073 TAATAAATAA
1 TAA-AAATTA
**
64251083 TAAATTTTA
1 TAAAAATTA
*
64251092 GAAAAATTA
1 TAAAAATTA
*
64251101 TTAAAATTTAA
1 -TAAAAATT-A
*
64251112 TAAAAATTG
1 TAAAAATTA
*
64251121 TAAAAAATA
1 TAAAAATTA
*
64251130 -AAAAATTG
1 TAAAAATTA
*
64251138 TAAAATTTTA
1 TAAAA-ATTA
*
64251148 TAAAAATCA
1 TAAAAATTA
64251157 TAAAAATTA
1 TAAAAATTA
64251166 ATGACCCCTT
Statistics
Matches: 77, Mismatches: 20, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
8 6 0.08
9 33 0.43
10 28 0.36
11 10 0.13
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.34
Consensus pattern (9 bp):
TAAAAATTA
Found at i:64251160 original size:19 final size:19
Alignment explanation
Indices: 64251053--64251161 Score: 80
Period size: 19 Copynumber: 5.7 Consensus size: 19
64251043 CTGCTCTTAT
**
64251053 TAAAAATTATAAAAAAATTA
1 TAAAAATTAT-AAAATTTTA
*
64251073 TAATAAATAAT-AAATTTTA
1 TAA-AAATTATAAAATTTTA
* *
64251092 GAAAAATTATTAAAATTTAA
1 TAAAAATTA-TAAAATTTTA
* **
64251112 TAAAAATTGTAAAA-AATA
1 TAAAAATTATAAAATTTTA
*
64251130 -AAAAATTGTAAAATTTTA
1 TAAAAATTATAAAATTTTA
*
64251148 TAAAAATCATAAAA
1 TAAAAATTATAAAA
64251162 ATTAATGACC
Statistics
Matches: 69, Mismatches: 15, Indels: 11
0.73 0.16 0.12
Matches are distributed among these distances:
17 13 0.19
18 8 0.12
19 25 0.36
20 17 0.25
21 6 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (19 bp):
TAAAAATTATAAAATTTTA
Found at i:64251161 original size:36 final size:37
Alignment explanation
Indices: 64251093--64251162 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 37
64251083 TAAATTTTAG
* **
64251093 AAAAATTATTAAAATTTAATAAAAATTGTAAAAAATA
1 AAAAATTAGTAAAATTTAATAAAAATCATAAAAAATA
*
64251130 AAAAATT-GTAAAATTTTATAAAAATCATAAAAA
1 AAAAATTAGTAAAATTTAATAAAAATCATAAAAA
64251163 TTAATGACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
36 22 0.76
37 7 0.24
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (37 bp):
AAAAATTAGTAAAATTTAATAAAAATCATAAAAAATA
Found at i:64251445 original size:17 final size:18
Alignment explanation
Indices: 64251423--64251462 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
64251413 TTTTATAAAA
64251423 TTTTACAATTTT-TATTT
1 TTTTACAATTTTATATTT
*
64251440 TTTTACGATTTTATATTT
1 TTTTACAATTTTATATTT
64251458 TTTTA
1 TTTTA
64251463 ATAAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (18 bp):
TTTTACAATTTTATATTT
Found at i:64251458 original size:18 final size:18
Alignment explanation
Indices: 64251398--64251462 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
64251388 CTATATATTC
64251398 TATA-TTTTTTACGATTTT
1 TATATTTTTTTACGA-TTT
*** *
64251416 TATAAAATTTTACAATTT
1 TATATTTTTTTACGATTT
64251434 T-TATTTTTTTACGATTT
1 TATATTTTTTTACGATTT
64251451 TATATTTTTTTA
1 TATATTTTTTTA
64251463 ATAAATTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
17 13 0.34
18 18 0.47
19 7 0.18
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (18 bp):
TATATTTTTTTACGATTT
Found at i:64251486 original size:27 final size:30
Alignment explanation
Indices: 64251456--64251510 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
64251446 GATTTTATAT
*
64251456 TTTTTTAA-T-AAATTT-TTAATATTTAAA
1 TTTTTTAATTAAAATTTAATAATATTTAAA
64251483 TTTTTTAATTAAAATTTAATAATATTTA
1 TTTTTTAATTAAAATTTAATAATATTTA
64251511 TAGCTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 8 0.33
28 1 0.04
29 6 0.25
30 9 0.38
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
TTTTTTAATTAAAATTTAATAATATTTAAA
Found at i:64251648 original size:85 final size:87
Alignment explanation
Indices: 64251559--64251748 Score: 267
Period size: 87 Copynumber: 2.2 Consensus size: 87
64251549 AATCTTTAAT
** *
64251559 AAAAGTAGGGGCTTAATT-TTTTTTTAAA-GTTTGAGGGTAGTTTTGATGCATTTTAAAAGTTCA
1 AAAAGTAGGGGCTTAATTATTTTTAAAAAGGTTTGAGGGCAGTTTTGATGCATTTTAAAAGTTCA
* * *
64251622 AGTACCCAATTGAGTGTAAAAA
66 AGTACCCAAATGAATGCAAAAA
* ** * *
64251644 AAAAGTAGGGGCGTAATTATTTTTAAAAAGGTTTGAGGGCCTTTTTGATTCATTTTGAAAGTTCA
1 AAAAGTAGGGGCTTAATTATTTTTAAAAAGGTTTGAGGGCAGTTTTGATGCATTTTAAAAGTTCA
64251709 AGTACCCAAATGAATGCAAAAA
66 AGTACCCAAATGAATGCAAAAA
64251731 AAAAGTAGGGGCTTAATT
1 AAAAGTAGGGGCTTAATT
64251749 GCTTTTTCTG
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 17 0.19
86 8 0.09
87 66 0.73
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (87 bp):
AAAAGTAGGGGCTTAATTATTTTTAAAAAGGTTTGAGGGCAGTTTTGATGCATTTTAAAAGTTCA
AGTACCCAAATGAATGCAAAAA
Found at i:64253412 original size:30 final size:30
Alignment explanation
Indices: 64253376--64253436 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
64253366 ACATGTTAAG
64253376 TATGTTATGAAATTGTGAAATGTTTATGGA
1 TATGTTATGAAATTGTGAAATGTTTATGGA
64253406 TATGTTATGAAATTGTGAAATGTTTATGGA
1 TATGTTATGAAATTGTGAAATGTTTATGGA
64253436 T
1 T
64253437 CATGGATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (30 bp):
TATGTTATGAAATTGTGAAATGTTTATGGA
Found at i:64257570 original size:28 final size:28
Alignment explanation
Indices: 64257530--64257588 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
64257520 ACAGACTCAG
*
64257530 TACGCTAATGACATATCATATAGGTGAT
1 TACGCCAATGACATATCATATAGGTGAT
*
64257558 TACGCCAATGACATATCATTTAGGTGAT
1 TACGCCAATGACATATCATATAGGTGAT
64257586 TAC
1 TAC
64257589 TAAATGCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (28 bp):
TACGCCAATGACATATCATATAGGTGAT
Found at i:64261797 original size:5 final size:5
Alignment explanation
Indices: 64261787--64261864 Score: 52
Period size: 5 Copynumber: 15.0 Consensus size: 5
64261777 AATATTGTCC
* * *
64261787 ATTAT ATTAT ATCTATT ATTAT -TTACT TTTAA ATTAT ATGTA- ATTAA
1 ATTAT ATTAT AT-TA-T ATTAT ATTA-T ATTAT ATTAT AT-TAT ATTAT
* *
64261834 ATTTTT ATTAT ATTAT ATGAT ATTAT ATTAT
1 A-TTAT ATTAT ATTAT ATTAT ATTAT ATTAT
64261865 TCTATATAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
4 5 0.09
5 38 0.66
6 12 0.21
7 3 0.05
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:64261953 original size:45 final size:46
Alignment explanation
Indices: 64261853--64261956 Score: 117
Period size: 45 Copynumber: 2.3 Consensus size: 46
64261843 ATATTATATG
64261853 ATATTATATTATTCTATATAGTATATGTATTATTAATATTTTATTA
1 ATATTATATTATTCTATATAGTATATGTATTATTAATATTTTATTA
* * * *
64261899 AT-TAAATATT-TTCTATATA-TGTAT-TATTATTAGTTTTAGTTATTA
1 ATAT-TATATTATTCTATATAGTATATGTATTATTAATATT--TTATTA
64261944 ATATTATATTATT
1 ATATTATATTATT
64261957 ATATGCTTCC
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
43 11 0.23
44 4 0.08
45 23 0.48
46 10 0.21
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.58
Consensus pattern (46 bp):
ATATTATATTATTCTATATAGTATATGTATTATTAATATTTTATTA
Found at i:64274151 original size:206 final size:207
Alignment explanation
Indices: 64273783--64274661 Score: 1336
Period size: 206 Copynumber: 4.3 Consensus size: 207
64273773 GTAGATCTGG
*
64273783 CTGAAGCAAGATCCAAGATGATTTGACATCCTTGTGTTTACAAGGAACAAATCG-AAGACATAGC
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAGACATAGC
**
64273847 TGATTTGGCTTTAACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
65 TGATTTGGCTTCCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* *
64273912 GAGAACAAATCAAATTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCT
130 GAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCT
* *
64273977 TCAGATGATTAGA
195 TCAGATGTTTATA
* * *
64273990 CTGAAGTAGATCTAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAA-TCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAGACATAGCT
* *
64274054 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGTATCTCTGTATTGTCAG
66 GATTTGGCTTCCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
64274119 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAAAGCAGATACATAGCAGATCTGGTCTT
131 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
64274184 CAGATGTTTATA
196 CAGATGTTTATA
* *
64274196 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAACAAATC-AAAGACATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAGACATAGCT
* *
64274260 GATTTGGCTTCCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAA
66 GATTTGGCTTCCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
64274325 AGAACAAATCAAAGTTTGGAGTCTCCATATTCGACGGCGAACAGATACATAGTAGATCTGGCCTT
131 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
64274390 CAGATGTTTATA
196 CAGATGTTTATA
* *
64274402 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT-TAAAGACATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAGACATAGCT
* * *
64274466 GATTTGGCTTCCACGTGTTTGCGATGAAGCAAATCTAATATGATTTGGCATCTCTGTATTGTCAG
66 GATTTGGCTTCCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * * * * ** *
64274531 AGAAAAAATCGAAGTCTGGCATCTCCAT-TTCGACGAATAGCATATACATAGCAGATCTAACCTC
131 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
*
64274595 CAAATGTTTATA
196 CAGATGTTTATA
* *
64274607 CTGAAGCAGATCCAAGATGATTTGGCATACTTGTGTTTACGAGGAACAAATCGAA
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA
64274662 GAAGCAGATT
Statistics
Matches: 613, Mismatches: 55, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
205 90 0.15
206 515 0.84
207 8 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (207 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAGACATAGCT
GATTTGGCTTCCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
CAGATGTTTATA
Done.