Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 207 of 325
Found at i:64536422 original size:28 final size:30
Alignment explanation
Indices: 64536330--64536435 Score: 121
Period size: 31 Copynumber: 3.6 Consensus size: 30
64536320 AAAAATAAAA
* *
64536330 AAATTGCATTTTGACCCCTAAACTTTTCTTT
1 AAATTACATTTAGACCCCTAAACTTTTC-TT
* *
64536361 AAATTTCATTTAGACCCCTAAACTTTCCTT
1 AAATTACATTTAGACCCCTAAACTTTTCTT
*
64536391 AAATTACATTTA-A-CCCTAAA-TTTTCTAA
1 AAATTACATTTAGACCCCTAAACTTTTCT-T
64536419 AAATTACATTTAG-CCCC
1 AAATTACATTTAGACCCC
64536436 AGAAGTTTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
27 5 0.08
28 19 0.29
29 4 0.06
30 13 0.20
31 25 0.38
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.40
Consensus pattern (30 bp):
AAATTACATTTAGACCCCTAAACTTTTCTT
Found at i:64536680 original size:15 final size:15
Alignment explanation
Indices: 64536647--64536684 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
64536637 AAAGAGCAAA
*
64536647 AAAAAAAATTTCCAG
1 AAAAAAAATTTCAAG
64536662 AAAAAAAATTT-AAG
1 AAAAAAAATTTCAAG
64536676 CAAAAAAAA
1 -AAAAAAAA
64536685 CCAAAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.71, C:0.08, G:0.05, T:0.16
Consensus pattern (15 bp):
AAAAAAAATTTCAAG
Found at i:64537258 original size:15 final size:16
Alignment explanation
Indices: 64537225--64537258 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
64537215 TTTTATTTGT
64537225 AATTGGTCTAAACAAA
1 AATTGGTCTAAACAAA
*
64537241 AATTGGTCTTAA-AAA
1 AATTGGTCTAAACAAA
64537256 AAT
1 AAT
64537259 AAAAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (16 bp):
AATTGGTCTAAACAAA
Found at i:64537495 original size:17 final size:17
Alignment explanation
Indices: 64537475--64537517 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
64537465 TTTATAACTA
*
64537475 TATTATATACATATCAT
1 TATTTTATACATATCAT
*
64537492 TATTTTGTACATATCAT
1 TATTTTATACATATCAT
64537509 TATTTTATA
1 TATTTTATA
64537518 TTATTGTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.53
Consensus pattern (17 bp):
TATTTTATACATATCAT
Found at i:64540445 original size:40 final size:40
Alignment explanation
Indices: 64540390--64540592 Score: 293
Period size: 40 Copynumber: 5.1 Consensus size: 40
64540380 CGGATGATAA
* * *
64540390 CCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
64540430 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
64540470 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
** *
64540510 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTGTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
64540550 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
64540590 CCG
1 CCG
64540593 ATTAAAGCCC
Statistics
Matches: 150, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
40 149 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:64543372 original size:24 final size:24
Alignment explanation
Indices: 64543329--64543378 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
64543319 CCTTCCTTTT
*
64543329 TTGCATTCATTCCATACATTTGCA
1 TTGCATTCATTACATACATTTGCA
64543353 TTGCATTGCATTACAT-CATTTGCA
1 TTGCATT-CATTACATACATTTGCA
64543377 TT
1 TT
64543379 AAACTTTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (24 bp):
TTGCATTCATTACATACATTTGCA
Found at i:64549184 original size:39 final size:39
Alignment explanation
Indices: 64549015--64549237 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 39
64549005 GCTACTCGTT
* * *
64549015 CAAATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
*
64549055 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
* *
64549095 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGC-CCGATTTAGTAACTCGCA
* *
64549135 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* * * * * *
64549174 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
64549215 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
64549238 GGCATCATTC
Statistics
Matches: 157, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.02
39 32 0.20
40 105 0.67
41 17 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:64549193 original size:119 final size:120
Alignment explanation
Indices: 64549017--64549232 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
64549007 TACTCGTTCA
** * * *
64549017 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAT
*
64549082 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACC
* *
64549137 AATGCCTTCGGG-CTTAGCCCAGAAT-TAGTAACTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCC-GAATATAGTAACTCGCACAAATACCTTCGGGA-CTTAGCCCGG
* *
64549199 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
64549233 GCCCGGGCAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.04
119 58 0.70
120 22 0.27
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACC
Found at i:64554252 original size:74 final size:74
Alignment explanation
Indices: 64554045--64554663 Score: 364
Period size: 74 Copynumber: 8.0 Consensus size: 74
64554035 GATGCTTTTA
64554045 TTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 TTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
64554109 AATTTCAA-
66 ATTTTCAAT
* *
64554117 TTTCTGTTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 TTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
64554181 ATTTTCAAT
66 ATTTTCAAT
* * *
64554190 TTTC-GCTTTTCAAAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTCAAAACACGTTGAG
1 TTTCTG-TTTTCAAAAATTCAACTCATATTGCGAGAA-ATGAGTTGAGCCTCAAGACACGTTGAG
64554253 GTATTTTCAATTT
64 GTATTTTCAA--T
* * * * * ** * ***
64554266 CTGTTCAATTTATGTTTTTCAAAAA-TCAA-TTATGTTTTTC-AAAAATCAACTCATATTGCGAG
1 -T-TTC------TG-TTTTCAAAAATTCAACTCA--TATTGCGAGAAATGAGTTGAGCCT-C-A-
* * * * ** *
64554328 AAATAAGTTGAGCCTCAAGACACGTTGAGGTAT
52 AGACACGTTGAG------G-TATTTTCA---AT
* ** **
64554361 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATATT
1 TTTC----TGT-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
*
64554426 GAGGTAATTTCAA-
61 GAGGTATTTTCAAT
* *
64554439 TTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
1 TTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
64554503 ATTTTCAAT
66 ATTTTCAAT
* * * ** * *
64554512 TTT-TATCTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 TTTCTGT-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
64554576 TAATTT-AAA
65 TATTTTCAAT
* * * * * * **
64554585 TTTATGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGA-GAGTTGAGCCTCAGGTCACACACTG
1 TTTCTGTTTTC-AAAAATTCAACTCATATTGCGAGA-AATGAGTTGAGCCTCAAG--ACACGTTG
64554649 AGGTATTTTCAAT
62 AGGTATTTTCAAT
64554662 TT
1 TT
64554664 CCATTTTTCA
Statistics
Matches: 429, Mismatches: 73, Indels: 85
0.73 0.12 0.14
Matches are distributed among these distances:
72 125 0.29
73 31 0.07
74 147 0.34
75 1 0.00
76 16 0.04
77 5 0.01
78 7 0.02
79 1 0.00
82 4 0.01
83 3 0.01
84 10 0.02
85 18 0.04
86 1 0.00
87 10 0.02
89 8 0.02
90 2 0.00
91 14 0.03
92 13 0.03
93 6 0.01
94 5 0.01
95 1 0.00
97 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (74 bp):
TTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
ATTTTCAAT
Found at i:64554300 original size:20 final size:21
Alignment explanation
Indices: 64554270--64554314 Score: 83
Period size: 20 Copynumber: 2.2 Consensus size: 21
64554260 CAATTTCTGT
64554270 TCAATTTATGTTTTTCAAAAA
1 TCAATTTATGTTTTTCAAAAA
64554291 TCAA-TTATGTTTTTCAAAAA
1 TCAATTTATGTTTTTCAAAAA
64554311 TCAA
1 TCAA
64554315 CTCATATTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (21 bp):
TCAATTTATGTTTTTCAAAAA
Found at i:64554764 original size:91 final size:91
Alignment explanation
Indices: 64554596--64554765 Score: 234
Period size: 91 Copynumber: 1.9 Consensus size: 91
64554586 TTATGTTGTC
* *
64554596 AAAAAAATCAACTCGTATTGCGAGAGGAGAGTTGAGCCTCAGGTCACACACTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGTCACACACTGAGCTATTTTCAA
*
64554661 TTTCCATTTTTCAATTTCTGCCTTTA
66 TTTCCATCTTTCAATTTCTGCCTTTA
* * * * *
64554687 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGG-TCACACACTGAGCTATTTTCA
**
64554751 ATTTCTGTCTTTCAA
65 ATTTCCATCTTTCAA
64554766 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
90 2 0.03
91 66 0.97
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (91 bp):
AAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGTCACACACTGAGCTATTTTCAA
TTTCCATCTTTCAATTTCTGCCTTTA
Found at i:64554794 original size:77 final size:79
Alignment explanation
Indices: 64554666--64554881 Score: 276
Period size: 77 Copynumber: 2.8 Consensus size: 79
64554656 TTCAATTTCC
* * * * *
64554666 ATTTTTCAATTTCTGCCTTTAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGC
1 ATTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGA
* *
64554730 TCACGCGCTGAGCT
66 TCACACACTGAGCT
64554744 A-TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGA
1 ATTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGA
*
64554807 TCACACACTGAGGT
66 TCACACACTGAGCT
* * * * * *
64554821 ATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCT
1 A-TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
64554882 CGGGTCACAT
Statistics
Matches: 120, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
76 3 0.03
77 65 0.54
78 1 0.01
79 49 0.41
80 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (79 bp):
ATTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGA
TCACACACTGAGCT
Found at i:64554813 original size:168 final size:165
Alignment explanation
Indices: 64554504--64554844 Score: 461
Period size: 168 Copynumber: 2.0 Consensus size: 165
64554494 TGCTGAGGTA
* *
64554504 TTTTCAATTTTTATCTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTACCTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
64554569 GCTGAGGTAATTTAAATTTATGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGAGAGTTGAGCC
66 GCTGAGCTAATTTAAATTTATGTTGTCAAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCC
* *
64554634 TCAGGTCACACACTGAGGTA-TTTTCAATTTCCAT
131 TCAGATCACACACTGAGGTATTTTTCAATTTACAT
* * *
64554668 TTTTCAATTTCTGCCTTTAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
1 TTTTCAATTTCTACCTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
* * * * * *
64554732 ACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
62 ACACGCTGAGCTAATTTAAATTTATGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGAGAGTT
* *
64554797 GAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATAT
126 GAGCCTCAGATCACACACTGAGGTA-TTTTTCAATTTACAT
64554838 TTTTCAA
1 TTTTCAA
64554845 AAAAATCAAC
Statistics
Matches: 153, Mismatches: 17, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
164 17 0.11
165 38 0.25
167 22 0.14
168 57 0.37
170 19 0.12
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (165 bp):
TTTTCAATTTCTACCTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGCTAATTTAAATTTATGTTGTCAAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCC
TCAGATCACACACTGAGGTATTTTTCAATTTACAT
Found at i:64554899 original size:79 final size:78
Alignment explanation
Indices: 64554667--64555865 Score: 454
Period size: 79 Copynumber: 14.7 Consensus size: 78
64554657 TCAATTTCCA
* ** * * * *
64554667 TTTTTCAATTTCTGCCTTTAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
* *
64554732 ACGCGCTGAGCTA-
66 AC-AGCTGAGGTAT
* * * *
64554745 -TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
1 TTTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
*
64554809 ACACACTGAGGTAT
66 ACA-GCTGAGGTAT
* * * * *
64554823 TTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGGGTC
1 TTTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
64554888 ACATG-TCGAGGTAT
66 ACA-GCT-GAGGTAT
* * * ** * *
64554902 TTTCAAAATCTATTTTCAATTTCTGTTCGTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTG
1 TTT----TTC-AATTT--ATATCT-TTC-AAAAAA--ATCAACTCATATTGCGAGAGGTGAGTTG
* * * *
64554967 AGCGTTGGCTCATACGCTGAGGTA-
55 AGCCTCGGATCACA-GCTGAGGTAT
* * * * * *
64554991 -TTTTCAATTTCTGT-TCGTC--AAAAATCAACTCATATTGTC-AGAGGTGAGTTCAGTCTCGGG
1 TTTTTCAATTTATATCT-TTCAAAAAAATCAACTCATATTG-CGAGAGGTGAGTTGAGCCTCGGA
*
64555051 CCACATG-TCGAGGTCTTTTCAAATT
64 TCACA-GCT-GAGG-----T---A-T
* * * *
64555076 CTATTTTTAATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
1 -T-TTTTCAATTTATATCTTTC-A--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
64555141 GGCTTGCAC-GCTGAGGTA-
61 GG-AT-CACAGCTGAGGTAT
* * * *
64555159 -TTTTCAATTTCTGTTCGTT---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTC-GAG
1 TTTTTCAATTTAT-ATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGA-
* *
64555219 CCACATGCCGAGGTCTTTTCAAATT
64 TCACA-GCTGAGG-----T---A-T
* * * ** *
64555244 CTATTTTTAATTTCTATTTTTTTTAAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT
1 -T-TTTTCAATTTATA-TCTTTCAAAAAAA---TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
64555309 TGGCTCACATGCTGAGGTA-
60 CGGATCACA-GCTGAGGTAT
* * * * * * * **
64555328 -TTTTCAATTTCTGT-TCGTC--AAAAATCAACTCATATTACGAGAGATGAGTTGAGTCTTGGGC
1 TTTTTCAATTTATATCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAT
*
64555389 CACATGCCGAGGTCTTTTCAAATT
65 CACA-GCTGAGG-----T---A-T
* * * *
64555413 CTGTTTTTAATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC
1 -T-TTTTCAATTTATATCTTTC-A--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
64555478 AGG-TCACACGCCGAGGTA-
61 -GGATCACA-GCTGAGGTAT
* * * ** *
64555496 TTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGACATGAGTTGAGGCTCGG
1 TTTTTCAATTTATATCTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* * *
64555561 GTCACGTGCCGAGGTAT
63 ATCAC-AGCTGAGGTAT
* * * **
64555578 TTTTT-AATTTCTAT-TTTCAAAAAAATCAACCCATATTACGAGAGGTGAGTTGAGCCTCAAATC
1 TTTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
64555641 AC-GCACTGAGGTA-
66 ACAG--CTGAGGTAT
* * * * *
64555654 -TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC-GA
1 TTTTTCAATTTATATCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGA
*
64555717 GTCACACGCCGAGGTA-
64 -TCACA-GCTGAGGTAT
* * *
64555733 TTTTTCAATTTCTATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
1 TTTTTCAATTTATATCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
64555798 -TCACACGCTGAGGTA-
63 ATCACA-GCTGAGGTAT
* ***
64555813 -TTTTCAATTT-TTTGGCTTTTTTAAAAATCAACTCATAATT-CGAGAGGTGAGTT
1 TTTTTCAATTTATAT--CTTTCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTT
64555866 AAACTTCGGG
Statistics
Matches: 880, Mismatches: 134, Indels: 214
0.72 0.11 0.17
Matches are distributed among these distances:
73 3 0.00
74 2 0.00
75 126 0.14
76 9 0.01
77 120 0.14
78 36 0.04
79 129 0.15
80 99 0.11
81 90 0.10
82 7 0.01
83 11 0.01
84 6 0.01
85 2 0.00
86 5 0.01
87 3 0.00
88 50 0.06
89 3 0.00
90 40 0.05
91 6 0.01
92 1 0.00
93 84 0.10
94 44 0.05
95 4 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (78 bp):
TTTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATC
ACAGCTGAGGTAT
Found at i:64554977 original size:246 final size:241
Alignment explanation
Indices: 64554495--64555040 Score: 676
Period size: 246 Copynumber: 2.3 Consensus size: 241
64554485 CTCAAGACAT
* *
64554495 GCTGAGGTATTTTCAATTTTTATCTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 GCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * **
64554559 CTCAGGACACGCTGAGGTAATTTAAATTTATGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGA
66 CTCAGCACACACTGAGGTAATTTAAATTTATGTTGTCAAAAAAATCAACTCACATTGCGAGAGGA
**
64554624 GAGTTGAGCCTCAGGTCACACACTGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCCTTTAAA
131 GAGTTGAGCCTCAGGTCACACACTGAGGTATTTTCAAAATCCATTTTTCAATTTCTG-CTTTAAA
* * * *
64554689 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
195 AAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTTGGCTCACAC
*
64554736 GCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 GCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * * * *
64554801 TTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGA
66 CTCAG--CACACACTGAGGTA--ATTTAAATTTAT-GTTGTCAAAAAAATCAACTCACATTGCGA
* * * ** *
64554866 GATGTGAGTTGAGCCTCGGGTCACA-TGTCGAGGTATTTTCAAAATCTA-TTTTCAATTTCTG-T
126 GAGGAGAGTTGAGCCTCAGGTCACACACT-GAGGTATTTTCAAAATCCATTTTTCAATTTCTGCT
* * *
64554928 TCGTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCGTTGGCTCATAC
190 T--TAAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTTGGCTCACAC
*
64554982 GCTGAGGTATTTTCAATTTCTGT-TCGTC--AAAAATCAACTCATATTGTC-AGAGGTGAGTT
1 GCTGAGGTATTTTCAATTTCTGTCT-TTCAAAAAAATCAACTCATATTG-CGAGAGGTGAGTT
64555041 CAGTCTCGGG
Statistics
Matches: 264, Mismatches: 30, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
241 24 0.09
242 41 0.16
244 43 0.16
245 2 0.01
246 92 0.35
247 62 0.23
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (241 bp):
GCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAGCACACACTGAGGTAATTTAAATTTATGTTGTCAAAAAAATCAACTCACATTGCGAGAGGA
GAGTTGAGCCTCAGGTCACACACTGAGGTATTTTCAAAATCCATTTTTCAATTTCTGCTTTAAAA
AAAATCAACTCATATTACAAGAGGTGAGTTGAGCCTTGGCTCACAC
Found at i:64555116 original size:337 final size:338
Alignment explanation
Indices: 64554764--64555897 Score: 1162
Period size: 337 Copynumber: 3.4 Consensus size: 338
64554754 TCTGTCTTTC
*
64554764 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACGCTGAGGTA-TTTTTC
* * * * * *
64554829 AATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGGGTCACATGT
65 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCGGGTCACATGC
*
64554894 CGAGGTATTTTCAAAATCTATTTTCAATTTC-TGTTCGT-CAAAAAAATCAACTCATATTACAAG
130 CGAGGTATTTTCAAAATCTATTTTCAATTTCTTGTTCGTAAAAAAAAATCAACTCATATTACAAG
* *
64554957 AGGTGAGTTGAGCGTTGGCTCATACGCTGAGGTATTTTCAATTTCTGTTCGTCAAAAATCAACTC
195 AGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTTCTGTTCGTCAAAAATCAACTC
* * *
64555022 ATATTGTC-AGAGGTGAGTTCAGTCTCGGGCCACATGTCGAGGTCTTTTCAAATTCTATTTTTAA
260 ATATT-ACGAGAGATGAGTTCAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATTCTATTTTTAA
64555086 TTTCTATTTTTCAAA
324 TTTCTATTTTTCAAA
* * **
64555101 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTTGCACGCTGAGGTA-TTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACGCTGAGGTATTTTTC
* * * * *
64555164 AATTTCTGTTCGTT---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGAGCCACATG
65 AATTTCTGTT-TTTCAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCGGGTCACATG
* * * * ** **
64555226 CCGAGGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTTTTAAAAAAAAATCAACTCATATTGT
129 CCGAGGTATTTTCAAAATCTATTTTCAATTTC--TTGTTCGTAAAAAAAAATCAACTCATATTAC
* *
64555291 GAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATTTCTGTTCGTCAAAAATCAA
192 AAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTTCTGTTCGTCAAAAATCAA
* * *
64555356 CTCATATTACGAGAGATGAGTTGAGTCTTGGGCCACATGCCGAGGTCTTTTCAAATTCTGTTTTT
257 CTCATATTACGAGAGATGAGTTCAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATTCTATTTTT
64555421 AATTTCTATTTTTCAAA
322 AATTTCTATTTTTCAAA
* * * *
64555438 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACGCTGAGGTATTTTTCA
* * *
64555503 ATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGACATGAGTTGAGGCTCGGGTCACGT
66 ATTTCTGTTTTTC---AAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCGGGTCACAT
* * * *
64555568 GCCGAGGTATTTT-----T-TAATTTC----TATT-TTC----AAAAAAATCAACCCATATTACG
128 GCCGAGGTATTTTCAAAATCTATTTTCAATTTCTTGTTCGTAAAAAAAAATCAACTCATATTACA
**** * * **
64555618 AGAGGTGAGTTGAGCCTCAAATCACGCACTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAT
193 AGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTTCTGTTCGTC----AAAAAT
* * ** * * *
64555683 CAACTCATATTGCGAGAGATGAGTTGAACCTCGAGTCACACGCCGAGG-----T---A---T-TT
254 CAACTCATATTACGAGAGATGAGTTCAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATTCTATT
*
64555736 TTCAATTTCTATTTTTC-AA
319 TTTAATTTCTATTTTTCAAA
* * *
64555755 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGTA-TTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACGCTGAGGTATTTTTCA
* * * * * *
64555819 ATTTTTTGGCTTTTT--TAAAAATCAACTCATAATT-CGAGAGGTGAGTTAAACTTCGGGT-AGC
66 A-TTTCT-G-TTTTTCAAAAAAATCAACTCAT-ATTGCGAGACGTGAGTTGAGCCTCGGGTCA-C
* *
64555880 ATCCCGAGCTATTTTCAA
126 ATGCCGAGGTATTTTCAA
64555898 TTTCTTGTTT
Statistics
Matches: 683, Mismatches: 87, Indels: 74
0.81 0.10 0.09
Matches are distributed among these distances:
313 1 0.00
314 45 0.07
315 3 0.00
316 7 0.01
317 61 0.09
318 19 0.03
319 6 0.01
322 1 0.00
325 1 0.00
326 65 0.10
330 49 0.07
331 2 0.00
333 71 0.10
335 13 0.02
336 9 0.01
337 258 0.38
338 19 0.03
343 53 0.08
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (338 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACGCTGAGGTATTTTTCA
ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCGGGTCACATGCC
GAGGTATTTTCAAAATCTATTTTCAATTTCTTGTTCGTAAAAAAAAATCAACTCATATTACAAGA
GGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTTCTGTTCGTCAAAAATCAACTCA
TATTACGAGAGATGAGTTCAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATTCTATTTTTAATT
TCTATTTTTCAAA
Found at i:64555184 original size:168 final size:169
Alignment explanation
Indices: 64554764--64555865 Score: 1091
Period size: 169 Copynumber: 6.6 Consensus size: 169
64554754 TCTGTCTTTC
* * *
64554764 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGGTA--TTTT
* * ** * * * *
64554828 CAATTTATATTTTTCAAAAAAATCAACTCACATTGT-GAGATGTGAGTTGAGCCTCGGGTCACAT
63 CAATTTCTGTTCGTC--AAAAATCAACTCATATTGTCGAGAGGTGAGTTGAGTCTCGGGCCACAT
* * * * * **
64554892 GTCGAGGTATTTTCAAAATCTATTTTCAATTTCTGTTCGTC---
126 GCCGAGGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAAA
* * * *
64554933 AAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCGTTGGCTCATACGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAA
* *
64554998 TTTCTGTTCGTCAAAAATCAACTCATATTGTC-AGAGGTGAGTTCAGTCTCGGGCCACATGTCGA
66 TTTCTGTTCGTCAAAAATCAACTCATATTGTCGAGAGGTGAGTTGAGTCTCGGGCCACATGCCGA
64555062 GGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAAA
131 GGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAAA
**
64555101 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTGCACGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAA
* *
64555166 TTTCTGTTCGTTAAAAATCAACTCATATTG-CGAGAGGTGAGTTGAGTCTCGAGCCACATGCCGA
66 TTTCTGTTCGTCAAAAATCAACTCATATTGTCGAGAGGTGAGTTGAGTCTCGGGCCACATGCCGA
**
64555230 GGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTTTTAA
131 GGTCTTTTCAAATTCTATTTTTAATTTCTA-TTTTTCAAA
* *
64555270 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAA
* * *
64555335 TTTCTGTTCGTCAAAAATCAACTCATATT-ACGAGAGATGAGTTGAGTCTTGGGCCACATGCCGA
66 TTTCTGTTCGTCAAAAATCAACTCATATTGTCGAGAGGTGAGTTGAGTCTCGGGCCACATGCCGA
*
64555399 GGTCTTTTCAAATTCTGTTTTTAATTTCTATTTTTCAAA
131 GGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAAA
* * *
64555438 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTA-TTTTC
** ** * *
64555502 AATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTG-CGAGACATGAGTTGAGGCTCGGGTCAC
64 AATTTCTGTTCGTC-----AAAAATCAACTCATATTGTCGAGAGGTGAGTTGAGTCTCGGGCCAC
*
64555566 GTGCCGAGG-----T---A---T-TTTTTAATTTCTA-TTTTC---
124 ATGCCGAGGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAAA
* * **** * *
64555596 AAAAAAATCAACCCATATTACGAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAA
** * ** * * *
64555661 TTTCTGTTTTTCAAAAAAAAATCAACTCATATTG-CGAGAGATGAGTTGAACCTCGAGTCACACG
66 TTTCTGTTCGTC----AAAAATCAACTCATATTGTCGAGAGGTGAGTTGAGTCTCGGGCCACATG
*
64555725 CCGAGG-----T---A---T-TTTTCAATTTCTATTTTTC-AA
127 CCGAGGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAAA
* *
64555755 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG-TCACACGCTGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCA
* ** * *
64555819 ATTTTTTGGCTTTTTTAAAAATCAACTCATAAT-TCGAGAGGTGAGTT
65 A-TTTCT-G-TTCGTCAAAAATCAACTCATATTGTCGAGAGGTGAGTT
64555866 AAACTTCGGG
Statistics
Matches: 825, Mismatches: 83, Indels: 61
0.85 0.09 0.06
Matches are distributed among these distances:
156 67 0.08
157 24 0.03
158 76 0.09
159 56 0.07
160 4 0.00
161 6 0.01
162 18 0.02
163 1 0.00
165 76 0.09
166 1 0.00
167 16 0.02
168 206 0.25
169 224 0.27
170 2 0.00
174 48 0.06
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (169 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAA
TTTCTGTTCGTCAAAAATCAACTCATATTGTCGAGAGGTGAGTTGAGTCTCGGGCCACATGCCGA
GGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAAA
Found at i:64555232 original size:75 final size:75
Alignment explanation
Indices: 64555103--64555245 Score: 198
Period size: 75 Copynumber: 1.9 Consensus size: 75
64555093 TTTTCAAAAA
* ** * *
64555103 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTGCACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCCGAGGTATTTTCAAAT
64555168 TCTGTTCGTT
66 TCTGTTCGTT
* * *
64555178 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGAGC-CACATGCCGAGGTCTTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GCTCACACGCCGAGGTATTTTCAAA
64555242 TTCT
65 TTCT
64555246 ATTTTTAATT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
75 57 0.97
76 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCCGAGGTATTTTCAAAT
TCTGTTCGTT
Found at i:64555376 original size:75 final size:75
Alignment explanation
Indices: 64555272--64555417 Score: 213
Period size: 75 Copynumber: 1.9 Consensus size: 75
64555262 TTTTTTAAAA
** * * *
64555272 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTT-GGCTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTTGGGC-CACATGCCGAGGTATTTTCAAA
64555336 TTCTGTTCGTC
65 TTCTGTTCGTC
* *
64555347 AAAAATCAACTCATATTACGAGAGATGAGTTGAGTCTTGGGCCACATGCCGAGGTCTTTTCAAAT
1 AAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTTGGGCCACATGCCGAGGTATTTTCAAAT
64555412 TCTGTT
66 TCTGTT
64555418 TTTAATTTCT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
75 60 0.95
76 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (75 bp):
AAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTTGGGCCACATGCCGAGGTATTTTCAAAT
TCTGTTCGTC
Found at i:64555532 original size:81 final size:80
Alignment explanation
Indices: 64555416--64555822 Score: 549
Period size: 80 Copynumber: 5.1 Consensus size: 80
64555406 TCAAATTCTG
*
64555416 TTTTT-AATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
1 TTTTTCAATTTCTATTTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
64555480 GTCACACGCCGAGGTA
65 GTCACACGCCGAGGTA
* ** * *
64555496 TTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGACATGAGTTGAGGCTCGG
1 TTTTTCAATTTCTATTTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
**
64555561 GTCACGTGCCGAGGTA
65 GTCACACGCCGAGGTA
* * * **
64555577 TTTTTTAATTTCTA-TTTTC--AAAAAAATCAACCCATATTACGAGAGGTGAGTTGAGCCTCAAA
1 TTTTTCAATTTCTATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
64555639 TCACGCACTGAGGTA
66 TCACACGCCGAGGTA
* * *
64555654 -TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC-GA
1 TTTTTCAATTTCTATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-
64555717 GTCACACGCCGAGGTA
65 GTCACACGCCGAGGTA
*
64555733 TTTTTCAATTTCTATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
1 TTTTTCAATTTCTATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
64555798 TCACACGCTGAGGTA
66 TCACACGCCGAGGTA
64555813 -TTTTCAATTT
1 TTTTTCAATTT
64555823 TTTGGCTTTT
Statistics
Matches: 283, Mismatches: 37, Indels: 15
0.84 0.11 0.04
Matches are distributed among these distances:
76 11 0.04
77 52 0.18
79 58 0.20
80 82 0.29
81 80 0.28
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (80 bp):
TTTTTCAATTTCTATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
TCACACGCCGAGGTA
Found at i:64555839 original size:80 final size:78
Alignment explanation
Indices: 64555437--64555909 Score: 412
Period size: 80 Copynumber: 6.0 Consensus size: 78
64555427 TATTTTTCAA
* *
64555437 AAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTTC
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTA-TTTTC
*
64555502 AA-TTTCTGTTTTT
65 AATTTTTTGTTTTT
** * * * **
64555515 CAAAAAAAAAATCAACTCATATTGCGAGACATGAGTTGAGGCTCGGGTCACGTGCCGAGGTATTT
1 ---AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTA-TT
* * *
64555580 TTTAA-TTTCT-ATTTT
62 TTCAATTTTTTGTTTTT
* * * * ** * * *
64555595 CAAAAAAATCAACCCATATTACGAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGGTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTCA
*
64555660 A-TTTCTGTTTTT
66 ATTTTTTGTTTTT
*
64555672 CAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAA-CCTC-GAGTCACACGCCGAGGTATT
1 --AAAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTCAG-GTCACACGCCGAGGTA-T
**
64555735 TTTCAATTTCTATT-TTTCA
61 TTTCAATTT-T-TTGTTTTT
*
64555754 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTCA
64555819 ATTTTTTGGCTTTTT
66 ATTTTTT-G-TTTTT
* * * * *
64555834 --TAAAAATCAACTCATAATT-CGAGAGGTGAGTTAAACTTCGGGT-AGCATC-CCGAGCTATTT
1 AAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTAAGCCTCAGGTCA-CA-CGCCGAGGTATTT
*
64555894 TCAATTTCTTGTTTTT
63 TCAATTTTTTGTTTTT
64555910 CAATAAAGAA
Statistics
Matches: 328, Mismatches: 47, Indels: 39
0.79 0.11 0.09
Matches are distributed among these distances:
76 16 0.05
77 55 0.17
78 56 0.17
79 62 0.19
80 67 0.20
81 67 0.20
82 4 0.01
83 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (78 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTCA
ATTTTTTGTTTTT
Found at i:64555841 original size:237 final size:238
Alignment explanation
Indices: 64555416--64555865 Score: 633
Period size: 237 Copynumber: 1.9 Consensus size: 238
64555406 TCAAATTCTG
* * * *
64555416 TTTTTAATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG
1 TTTTCAATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAGG
*
64555481 TCACACGCCGAGGTATTTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGACA
66 TCACACGCCGAGGTATTTTTCAATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGCGAGACA
* * * ** *
64555546 TGAGTTGAGGCTCGGGTCACGTGCCGAGGTATTTTTTAATTTCTATTTTCAAAAAAATCAACCCA
131 TGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTTCAATTTCTATTTTCAAAAAAATCAACCCA
64555611 T-ATTACGAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGGTA
196 TAATT-CGAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGGTA
*
64555654 TTTTCAATTTCTGTTTTTC-AAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC-GA
1 TTTTCAATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAG-
*
64555717 GTCACACGCCGAGGTATTTTTCAATTTCTATTTTTC-AAAAAAAAATCAACTCATATTGCGAGAG
65 GTCACACGCCGAGGTATTTTTCAATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGCGAGAC
* * * ***
64555781 GTGAGTTAAGCCTCAGGTCACACGCTGAGGTA-TTTTCAATTT-TTTGGCTTTTTTAAAAATCAA
130 ATGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTTCAATTTCTAT---TTTCAAAAAAATCAA
*
64555844 CTCATAATTCGAGAGGTGAGTT
192 CCCATAATTCGAGAGGTGAGTT
64555866 AAACTTCGGG
Statistics
Matches: 187, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
234 2 0.01
235 9 0.05
236 53 0.28
237 103 0.55
238 20 0.11
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (238 bp):
TTTTCAATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAGG
TCACACGCCGAGGTATTTTTCAATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGCGAGACA
TGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTTCAATTTCTATTTTCAAAAAAATCAACCCA
TAATTCGAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGGTA
Found at i:64556113 original size:31 final size:30
Alignment explanation
Indices: 64556078--64556178 Score: 105
Period size: 29 Copynumber: 3.4 Consensus size: 30
64556068 AAAAATAAAA
*
64556078 AAATTGCATTTTGACCCCTAAAATTTTCTTT
1 AAATTACATTTTGACCCCT-AAATTTTCTTT
* * * * *
64556109 AAATTTCACTTAGACCCCTAAACTTTCCTT
1 AAATTACATTTTGACCCCTAAATTTTCTTT
* **
64556139 AAATTACATTTT-AACCCTAAATTTTCTAA
1 AAATTACATTTTGACCCCTAAATTTTCTTT
64556168 AAATTACATTT
1 AAATTACATTT
64556179 AGCCCTAGAA
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
29 23 0.40
30 18 0.32
31 16 0.28
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.42
Consensus pattern (30 bp):
AAATTACATTTTGACCCCTAAATTTTCTTT
Found at i:64556407 original size:14 final size:14
Alignment explanation
Indices: 64556390--64556441 Score: 77
Period size: 15 Copynumber: 3.6 Consensus size: 14
64556380 GAGAAAAAAG
64556390 AGCAAAAAAAATCC
1 AGCAAAAAAAATCC
64556404 AGCAAAAAAAATTCC
1 AGCAAAAAAAA-TCC
*
64556419 AGCAAAAAAATTTCC
1 AGCAAAAAAA-ATCC
64556434 AGCAAAAA
1 AGCAAAAA
64556442 TAAAACCAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
14 11 0.31
15 24 0.69
ACGTcount: A:0.62, C:0.19, G:0.08, T:0.12
Consensus pattern (14 bp):
AGCAAAAAAAATCC
Found at i:64557021 original size:15 final size:16
Alignment explanation
Indices: 64556988--64557022 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
64556978 TTTTATTTGT
64556988 AATTGGTCTAAACAAA
1 AATTGGTCTAAACAAA
*
64557004 AATTGGTCTTAA-AAA
1 AATTGGTCTAAACAAA
64557019 AATT
1 AATT
64557023 AAAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (16 bp):
AATTGGTCTAAACAAA
Found at i:64557287 original size:17 final size:17
Alignment explanation
Indices: 64557228--64557289 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 17
64557218 TTCGAATTTA
*
64557228 ATATATATATTTT-T-T
1 ATATATATATTTTGTAC
* *
64557243 ATA-ACTATATTATATAC
1 ATATA-TATATTTTGTAC
64557260 ATATATATATTTTGTAC
1 ATATATATATTTTGTAC
64557277 ATATCAT-TATTTT
1 ATAT-ATATATTTT
64557290 ATATTATTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
14 1 0.03
15 10 0.26
16 1 0.03
17 23 0.61
18 3 0.08
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (17 bp):
ATATATATATTTTGTAC
Found at i:64560408 original size:39 final size:39
Alignment explanation
Indices: 64560354--64560439 Score: 118
Period size: 39 Copynumber: 2.2 Consensus size: 39
64560344 TTTATTTTAG
* * * **
64560354 GAGTAATTTTTTATATTATAGGAAGTAGGGGGTGAATAA
1 GAGTAGTTTTCTATATTATAGGAAGTAGAGGGAAAATAA
*
64560393 GAGTAGTTTTCTATATTATAGGAAGTAGAGGGAAAATAG
1 GAGTAGTTTTCTATATTATAGGAAGTAGAGGGAAAATAA
64560432 GAGTAGTT
1 GAGTAGTT
64560440 ATACCATTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.36, C:0.01, G:0.29, T:0.34
Consensus pattern (39 bp):
GAGTAGTTTTCTATATTATAGGAAGTAGAGGGAAAATAA
Found at i:64563944 original size:45 final size:45
Alignment explanation
Indices: 64563895--64563984 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
64563885 CATTTAATGG
*
64563895 CCATCATCATCATTACCTACTATTAACATAAAGAAAAATGGATTA
1 CCATCATCATCATTACCCACTATTAACATAAAGAAAAATGGATTA
*
64563940 CCATCATCATCATTACCCACTATTAACATAAATAAAAATGGATTA
1 CCATCATCATCATTACCCACTATTAACATAAAGAAAAATGGATTA
64563985 ATAACCATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (45 bp):
CCATCATCATCATTACCCACTATTAACATAAAGAAAAATGGATTA
Found at i:64565352 original size:15 final size:16
Alignment explanation
Indices: 64565320--64565352 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
64565310 TTTTATTTAT
64565320 TTTCTTCACCTACTCC
1 TTTCTTCACCTACTCC
*
64565336 TTTCTTCCCCT-CTCC
1 TTTCTTCACCTACTCC
64565351 TT
1 TT
64565353 AGCCGAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.06, C:0.45, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTCTTCACCTACTCC
Found at i:64572628 original size:14 final size:15
Alignment explanation
Indices: 64572609--64572639 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
64572599 GAAGCCATTT
64572609 ATTTTGAAAA-CAAA
1 ATTTTGAAAACCAAA
64572623 ATTTTGAAAACCAAA
1 ATTTTGAAAACCAAA
64572638 AT
1 AT
64572640 CAACTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.55, C:0.10, G:0.06, T:0.29
Consensus pattern (15 bp):
ATTTTGAAAACCAAA
Found at i:64576259 original size:101 final size:100
Alignment explanation
Indices: 64576080--64576372 Score: 345
Period size: 101 Copynumber: 2.9 Consensus size: 100
64576070 ATTGTGAGAA
* * *** * * *
64576080 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGATCACATGTGTAGTA
*
64576145 CTAAGTGCA-GCTACTACGTGTACCAGATTGTTAGGT
64 CTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * * *
64576181 CGCATGTGTAGTACTAAGTTCAGGCTACTATGTGTACCCGATAGCTTCGATCACATGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-TTAGATCACATGTGTAGTAC
* **
64576246 TAAATGCAGGCTACTACGTGTATTAGATGGTTAGGT
65 TAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * **
64576282 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTTGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGATCACATGTGTAGTACT
* *
64576347 AAGTGCAGGCTACTATGCGTACCAGA
66 AAGTGCAGGCTACTACGTGTACCAGA
64576373 GAACTTCGGT
Statistics
Matches: 161, Mismatches: 30, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
100 62 0.39
101 99 0.61
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGATCACATGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:64576304 original size:50 final size:50
Alignment explanation
Indices: 64576080--64576372 Score: 336
Period size: 50 Copynumber: 5.8 Consensus size: 50
64576070 ATTGTGAGAA
* * *** * *
64576080 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG-GTTAGGT
* *
64576132 CACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * * * * *
64576181 CGCATGTGTAGTACTAAGTTCAGGCTACTATGTGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAGGT
* **
64576232 CACATGTGTAGTACTAAATGCAGGCTACTACGTGTATTAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
*
64576282 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
** * *
64576332 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
64576373 GAACTTCGGT
Statistics
Matches: 203, Mismatches: 36, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
49 25 0.12
50 105 0.52
51 53 0.26
52 20 0.10
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:64576356 original size:151 final size:152
Alignment explanation
Indices: 64576080--64576369 Score: 460
Period size: 151 Copynumber: 1.9 Consensus size: 152
64576070 ATTGTGAGAA
** * * *
64576080 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAATGCAGGCTACTACGTGTTTAAGACAGTGTTAGGTCACATGTGTAGTA
*
64576145 CTAAGTGCAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTTCAGGCTACT
66 CTAAGTGCAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
*
64576210 ATGTGTACCCGATAGCTTCGAT
131 ATGCGTACCCGATAGCTTCGAT
*
64576232 CACATGTGTAGTACTAAATGCAGGCTACTACGTGTATT-AGA-TG-GTTAGGTCACATGTGTAGT
1 CACATGTGTAGTACTAAATGCAGGCTACTACGTGT-TTAAGACAGTGTTAGGTCACATGTGTAGT
*
64576294 ACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTTGCATGTGTAGTACTAAGTGCAGGCTA
65 ACTAAGTGCA-GCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
64576359 CTATGCGTACC
129 CTATGCGTACC
64576370 AGAGAACTTC
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
150 27 0.21
151 63 0.50
152 35 0.28
153 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (152 bp):
CACATGTGTAGTACTAAATGCAGGCTACTACGTGTTTAAGACAGTGTTAGGTCACATGTGTAGTA
CTAAGTGCAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
ATGCGTACCCGATAGCTTCGAT
Found at i:64576407 original size:151 final size:150
Alignment explanation
Indices: 64576126--64576407 Score: 402
Period size: 151 Copynumber: 1.9 Consensus size: 150
64576116 TAAGACAGTT
*
64576126 TTAGGTCACGTGTGTAGTACTAAGTGCAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTA
* * * * * * * * *
64576191 GTACTAAGTTCAGGCTACTATGTGTACCCGATAGCTTCGATCACATGTGTAGTACTAAATGCAGG
66 GTACTAAGTGCAGGCTACTATGCGTACCAGAGAACTTCGATCACAAGGGTAGTAATAAATACAGG
64576256 CTACTACGTGTATTAGATGG
131 CTACTACGTGTATTAGATGG
*
64576276 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTTGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCA-GCTACTACGTGTACCAGATTGTTAGGTCGCATGTGT
* * * * **
64576341 AGTACTAAGTGCAGGCTACTATGCGTACCAGAGAACTTCGGTTATAAGGGTGGTAATATGTACAG
65 AGTACTAAGTGCAGGCTACTATGCGTACCAGAGAACTTCGATCACAAGGGTAGTAATAAATACAG
64576406 GC
130 GC
64576408 CACCAGGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
150 27 0.24
151 87 0.76
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (150 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTA
GTACTAAGTGCAGGCTACTATGCGTACCAGAGAACTTCGATCACAAGGGTAGTAATAAATACAGG
CTACTACGTGTATTAGATGG
Found at i:64580609 original size:46 final size:45
Alignment explanation
Indices: 64580553--64580719 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 45
64580543 TTCATAGTCA
* *
64580553 ATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCCG
* * * *
64580599 ATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGCCG
* * * *
64580645 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAGT-GTGGCCA
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAGGCCG
64580693 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
64580720 AGCTCACAAT
Statistics
Matches: 101, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 50 0.50
47 29 0.29
48 21 0.21
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCCG
Found at i:64580715 original size:140 final size:139
Alignment explanation
Indices: 64580457--64580719 Score: 345
Period size: 140 Copynumber: 1.9 Consensus size: 139
64580447 TGCAGGTGCT
* ** * *
64580457 GATGCTATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGTCGATGCCATGTCCCAT
1 GATGCTATGTCCCAGACATGGTCTTACACAAGCACTA-CATATCAATGCCGATGCCATGTCCCAG
*
64580522 ACATGGTCTTACACTGACACTTTCATAGTCAATGCATGTCCCAGACATGTCTTACACTGGCTTAC
65 ACATGGTCTTACACTGA-ACTCTCATAGTCAATGCATGTCCCAGACATGTCTTACACTGGCTTAC
64580587 GTCTCGAGGTC
129 GTCTCGAGGTC
* *
64580598 GATGC-ATGTCCCAGACAT-GTCTTACACTAGCACT-CATCTCAATGCCGATGCCATGTCCCAGA
1 GATGCTATGTCCCAGACATGGTCTTACACAAGCACTACATATCAATGCCGATGCCATGTCCCAGA
* *
64580660 CATGGTCTTACATTG-GCTCTCATAGTGTGGCCAATGCATGTCCCAGACATGTCTTACACT
66 CATGGTCTTACACTGAACTCTCATA--GT---CAATGCATGTCCCAGACATGTCTTACACT
64580720 AGCTCACAAT
Statistics
Matches: 107, Mismatches: 10, Indels: 11
0.84 0.08 0.09
Matches are distributed among these distances:
135 7 0.07
137 39 0.36
139 14 0.13
140 42 0.39
141 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (139 bp):
GATGCTATGTCCCAGACATGGTCTTACACAAGCACTACATATCAATGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGAACTCTCATAGTCAATGCATGTCCCAGACATGTCTTACACTGGCTTACGT
CTCGAGGTC
Found at i:64584956 original size:21 final size:21
Alignment explanation
Indices: 64584908--64584948 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
64584898 TTACTCCAAG
64584908 AAAGCCGATTGATCCATCTCA
1 AAAGCCGATTGATCCATCTCA
64584929 AAAGCCGATTGATCCATCTC
1 AAAGCCGATTGATCCATCTC
64584949 TGAAGCCGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (21 bp):
AAAGCCGATTGATCCATCTCA
Found at i:64585111 original size:41 final size:41
Alignment explanation
Indices: 64585054--64585131 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
64585044 GAGATGTTTT
*
64585054 CTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAGGGG
1 CTTATTTAGTTATGAACTAAATACCCTAAATACCTAAGGGG
64585095 CTTATTTAGTTATGAACTAAATACCCTAAATACCTAA
1 CTTATTTAGTTATGAACTAAATACCCTAAATACCTAA
64585132 AGGGAATGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.33
Consensus pattern (41 bp):
CTTATTTAGTTATGAACTAAATACCCTAAATACCTAAGGGG
Found at i:64613685 original size:28 final size:28
Alignment explanation
Indices: 64613651--64613715 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
64613641 TCAGTGTACG
* *
64613651 AAATATTGAGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
64613679 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
64613707 AAATATTGA
1 AAATATTGA
64613716 ATGATTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:64613832 original size:39 final size:39
Alignment explanation
Indices: 64613788--64613892 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 39
64613778 GACTTTATAA
64613788 TGGTGTTATATCCGGGCT-AAGTCCCAAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAAGTCCCAAA-GCATTCGTGC
* ** * *
64613827 TGGTGTTATATCCGGGGTAAAGTCCCGCAGCCTTTGTGC
1 TGGTGTTATATCCGGGCTAAAGTCCCAAAGCATTCGTGC
* *
64613866 TGGTATTATATCCAGGCTTAAAGTCCC
1 TGGTGTTATATCCGGGC-TAAAGTCCC
64613893 GCATGCTTTG
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 39 0.70
40 17 0.30
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAAGTCCCAAAGCATTCGTGC
Found at i:64613888 original size:40 final size:39
Alignment explanation
Indices: 64613823--64613909 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 39
64613813 AAAGGCATTC
* *
64613823 GTGCTGGTGTTATATCCGGGGTAAAGTCCCGCA-GCCTTT
1 GTGCTGGTATTATATCCGGCGTAAAGTCCCGCATG-CTTT
*
64613862 GTGCTGGTATTATATCCAGGCTTAAAGTCCCGCATGCTTT
1 GTGCTGGTATTATATCC-GGCGTAAAGTCCCGCATGCTTT
*
64613902 GTGGTGGT
1 GTGCTGGT
64613910 GATTGGATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 16 0.38
40 25 0.60
41 1 0.02
ACGTcount: A:0.16, C:0.21, G:0.30, T:0.33
Consensus pattern (39 bp):
GTGCTGGTATTATATCCGGCGTAAAGTCCCGCATGCTTT
Found at i:64618209 original size:85 final size:85
Alignment explanation
Indices: 64618066--64618244 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
64618056 GGCCGGCCAT
64618066 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
64618131 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
64618151 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
64618216 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
64618236 GGGCATGGG
1 GAGCATGGG
64618245 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:64619573 original size:47 final size:47
Alignment explanation
Indices: 64619502--64620033 Score: 722
Period size: 47 Copynumber: 11.6 Consensus size: 47
64619492 TATTTGAATA
* *
64619502 AATGTGAAA--GTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
64619547 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
64619593 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
64619640 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
64619689 AATGTGAAAGTGTATATATGTGATAAGGCCGAATTGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
64619736 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
64619783 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
64619830 AATGTGAACA-TG--TATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
64619875 AATGTGAACA-TGTGTATGTGTGAT-AGGCCGAATGG-CAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
64619920 -ATGTGAACA-TG----CA--TGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
64619960 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
64620007 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
64620034 TCCCGAAGGG
Statistics
Matches: 453, Mismatches: 16, Indels: 34
0.90 0.03 0.07
Matches are distributed among these distances:
38 4 0.01
39 11 0.02
40 11 0.02
41 9 0.02
44 11 0.02
45 63 0.14
46 57 0.13
47 239 0.53
48 1 0.00
49 47 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:64619943 original size:224 final size:230
Alignment explanation
Indices: 64619502--64620033 Score: 712
Period size: 224 Copynumber: 2.3 Consensus size: 230
64619492 TATTTGAATA
* *
64619502 AATGTGAAA--GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * *
64619565 TGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
66 TGTGATAAGGCCGAATGCCAATGTGATGAATGTGAAAGTG-ATATATGAGATAAGGCCGAATGGC
* * *
64619630 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
130 CAATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
64619695 AAAGTGTATATATGTGATAAGGCCGAATTGCCAATGTGATG
194 AAAGTG---ACA-GTGATAAGGCCGAATGGCCAATGTGATG
*
64619736 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATAT
*
64619800 GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG-TATATGAGATAAGGCCGAATG
65 ATGTGATAAGGCCGAAT-GCCAATGTGATGAATGTGAA-AGTGATATATGAGATAAGGCCGAATG
* *
64619863 GCCAATGTGATGAATGTGAACA-TG-TGTATGTGTGAT-AGGCCGAATGG-CAATGTGATG-ATG
128 GCCAATGTGATGAATGTGAA-AGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
64619923 TGAACA-TG-CA-TGATAAGGCCGAATGGCCAATGTGATG
192 TGAA-AGTGACAGTGATAAGGCCGAATGGCCAATGTGATG
* * *
64619960 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
64620025 TGTGATAAG
66 TGTGATAAG
64620034 TCCCGAAGGG
Statistics
Matches: 270, Mismatches: 20, Indels: 26
0.85 0.06 0.08
Matches are distributed among these distances:
223 1 0.00
224 93 0.34
226 1 0.00
230 9 0.03
231 10 0.04
232 10 0.04
233 10 0.04
234 9 0.03
235 40 0.15
236 64 0.24
237 22 0.08
238 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (230 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGCCAATGTGATGAATGTGAAAGTGATATATGAGATAAGGCCGAATGGCC
AATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
AGTGACAGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:64619964 original size:271 final size:274
Alignment explanation
Indices: 64619502--64620033 Score: 722
Period size: 271 Copynumber: 1.9 Consensus size: 274
64619492 TATTTGAATA
* *
64619502 AATGTGAAAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 AATGTGAAAGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATATG
* * * * *
64619567 TGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65 AGATAAGGCCGAATGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
64619632 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
130 ATGTGATGAATGTGAAAGTG-----ACA-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
64619697 AGTGTATATATGTGATAAGGCCGAATTGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
189 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAA
64619762 GGCCGAATGGCCAATGTGATG
254 GGCCGAATGGCCAATGTGATG
* *
64619783 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG-TATA
1 AATGTGAA-A-GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGATATA
* *
64619846 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGAT-AGGCCGAATG
63 TGAGATAAGGCCGAAT-GCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATG
64619909 G-CAATGTGATG-ATGTGAACA-TG-CA-TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
126 GCCAATGTGATGAATGTGAA-AGTGACAGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
64619969 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
190 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
64620034 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 18, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
271 95 0.42
273 1 0.00
279 9 0.04
280 10 0.04
281 36 0.16
282 32 0.14
283 43 0.19
284 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (274 bp):
AATGTGAAAGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATGA
GATAAGGCCGAATGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
TGTGATGAATGTGAAAGTGACAGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGAA
TGGCCAATGTGATG
Found at i:64620005 original size:22 final size:22
Alignment explanation
Indices: 64619933--64620005 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
64619923 TGAACATGCA
64619933 TGATAAGGCCGAATGGCCAATG
1 TGATAAGGCCGAATGGCCAATG
* * ***
64619955 TGATGAATG-TGAAAGTGTATATATG
1 TGAT-AAGGCCG-AA-TGGCCA-ATG
64619980 TGATAAGGCCGAATGGCCAATG
1 TGATAAGGCCGAATGGCCAATG
64620002 TGAT
1 TGAT
64620006 GGATGTGGAA
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 12 0.33
23 8 0.22
24 8 0.22
25 8 0.22
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
TGATAAGGCCGAATGGCCAATG
Found at i:64636351 original size:24 final size:24
Alignment explanation
Indices: 64636324--64636370 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
64636314 ACCGGTTAGG
64636324 TTCCCGGCGGTGCTCCGGCGAGCT
1 TTCCCGGCGGTGCTCCGGCGAGCT
*
64636348 TTCCCGGCGGTGCTCCGGTGAGC
1 TTCCCGGCGGTGCTCCGGCGAGC
64636371 CATCCCAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.04, C:0.36, G:0.38, T:0.21
Consensus pattern (24 bp):
TTCCCGGCGGTGCTCCGGCGAGCT
Found at i:64636376 original size:24 final size:24
Alignment explanation
Indices: 64636325--64636376 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
64636315 CCGGTTAGGT
**
64636325 TCCCGGCGGTGCTCCGGCGAGCTT
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
64636349 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
64636373 TCCC
1 TCCC
64636377 AGAATATAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.06, C:0.40, G:0.35, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:64636761 original size:42 final size:42
Alignment explanation
Indices: 64636709--64636814 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 42
64636699 GGCTCTTGGT
* **
64636709 TGTGCAGGAGCCTTGGTG-ACCATCAGCACCTTGGTGCTCGGA
1 TGTGCGGGAGCCTTGG-GCACCATCAGCACCTTGGTGCAAGGA
*
64636751 TGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGA
1 TGTGCGGGAGCCTTGGGCACCATCAGCACCTTGGTGCAAGGA
* *
64636793 TGTGCGAGAGCC-TCGGCACCAT
1 TGTGCGGGAGCCTTGGGCACCAT
64636815 TGGCAACCTA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
41 10 0.18
42 47 0.82
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.21
Consensus pattern (42 bp):
TGTGCGGGAGCCTTGGGCACCATCAGCACCTTGGTGCAAGGA
Found at i:64636863 original size:43 final size:43
Alignment explanation
Indices: 64636752--64637363 Score: 640
Period size: 43 Copynumber: 14.6 Consensus size: 43
64636742 GTGCTCGGAT
* * ** **
64636752 GTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
64636794 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGACGTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64636836 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64636879 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64636922 GTGCGAGAGCCTC-GGCACCATCCGCACCCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64636964 GTGCGGGAGCCTCGGACACCCA-CGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * * ** * *
64637007 GTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCAATCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * * *
64637049 GTACGGGAGCCTCGGACACCATCCGCAAACTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
64637092 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCACC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTC
* * *
64637135 GTGCGGGAGTCTC-GGCACCATCAGC-ACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64637176 ATGCGGGAGCCTC-GGCACCATCAGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64637218 GTGCGGGAGCCTCGGGCACCATC-G-----T--G--CTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * *
64637251 GTACGGGAGCCTCGGACACCATCGGCAACTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64637294 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64637337 ATGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
64637364 CCTTGCTGCC
Statistics
Matches: 487, Mismatches: 57, Indels: 51
0.82 0.10 0.09
Matches are distributed among these distances:
33 23 0.05
34 3 0.01
35 1 0.00
37 1 0.00
39 1 0.00
40 2 0.00
41 49 0.10
42 148 0.30
43 254 0.52
44 5 0.01
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:64636953 original size:128 final size:127
Alignment explanation
Indices: 64636755--64637363 Score: 667
Period size: 128 Copynumber: 4.9 Consensus size: 127
64636745 CTCGGATGTG
* * ** ** * **
64636755 CGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGAT-GTGCGAGAGCCTCGGCACCATTGGC
1 CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCACCATCCGC
* * *
64636819 AACCTAGGACGTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTA
65 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTA
*
64636882 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCCGC
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCCGC
* *
64636947 ACCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCCA-CGGCAACCTAGGCCCTTGGTCGTA
65 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTCGTA
* * ** * * *
64637010 CGGGAGCCTCGGACACCATCGGCACCTTGGCAATCAGAT-GTACGGGAGCCTCGGACACCATCCG
1 CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGG-CACCATCCG
* * *
64637074 CAAACTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCACC-TGGTCGT
64 CAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGT
*
64637137 G
127 A
* * * * *
64637138 CGGGAGTCTC-GGCACCATCAGCACCTAGGCCCCTGGTCATGCGGGAGCCTCGGCACCATCAGCA
1 CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCCGCA
* *
64637202 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATC-G-----T--G--CTTAGAT-GTA
66 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTA
* * *
64637254 CGGGAGCCTCGGACACCATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCCG
* *
64637319 TAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCA
64 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
64637364 CCTTGCTGCC
Statistics
Matches: 411, Mismatches: 53, Indels: 41
0.81 0.10 0.08
Matches are distributed among these distances:
115 1 0.00
116 12 0.03
117 12 0.03
118 27 0.07
119 48 0.12
120 2 0.00
125 2 0.00
126 45 0.11
127 77 0.19
128 179 0.44
129 6 0.01
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.17
Consensus pattern (127 bp):
CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCCGCA
ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTA
Found at i:64636961 original size:85 final size:85
Alignment explanation
Indices: 64636794--64637363 Score: 629
Period size: 85 Copynumber: 6.8 Consensus size: 85
64636784 GTGCAAGGAT
* * * * *
64636794 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGACGTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
64636858 CGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* *
64636879 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
* *
64636944 CGCACCCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* *
64636964 GTGCGGGAGCCTCGGACACCCA-CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCA
* ** * *
64637028 TCGGC-ACCTTGGCAATCAGAT-
64 TCGGCAACCTAGGCCCT-TGGTC
* * * * *
64637049 GTACGGGAGCCTCGGACACCATCCGCAAACTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCA
64637113 TCGGCAACCTAGGCACC-TGGTC
64 TCGGCAACCTAGGC-CCTTGGTC
* * * *
64637135 GTGCGGGAGTCTC-GGCACCATCAGC-ACCTAGGCCCCTGGTCATGCGGGAGCCTCGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
* *
64637198 AGCAACCTAGGCCCCTGGTC
66 GGCAACCTAGGCCCTTGGTC
* *
64637218 GTGCGGGAGCCTCGGGCACCATC-G-----T--G--CTTAGAT-GTACGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGG-CACCA
*
64637272 TCGGCAACTTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* *
64637294 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
64637359 CGGCA
65 CGGCA
64637364 CCTTGCTGCC
Statistics
Matches: 409, Mismatches: 50, Indels: 51
0.80 0.10 0.10
Matches are distributed among these distances:
75 15 0.04
76 49 0.12
77 2 0.00
79 1 0.00
82 3 0.01
83 37 0.09
84 38 0.09
85 167 0.41
86 95 0.23
87 2 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:64637342 original size:119 final size:116
Alignment explanation
Indices: 64637138--64637360 Score: 338
Period size: 119 Copynumber: 1.9 Consensus size: 116
64637128 CCTGGTCGTG
*
64637138 CGGGAGTCTCGGCACCATCAGCACCTAGGCCCCTGGTCATGCGGGAGCCTCGGCACCATCAGCAA
1 CGGGAGCCTCGGCACCATCAGCACCTAGGCCCCTGGTCATGCGGGAGCCTCGGCACCATCAGCAA
*
64637203 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGTGCTTAGATGTA
66 CCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGTGCTTAGATGTA
* * * * *
64637254 CGGGAGCCTCGGACACCATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CGGGAGCCTCGG-CACCATCAGC-ACCTAGGCCCCTGGTCATGCGGGAGCCTC-GGCACCATCAG
* *
64637319 TAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCG
63 CAACCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCG
64637361 GCACCTTGCT
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
116 11 0.12
117 9 0.09
118 26 0.27
119 49 0.52
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (116 bp):
CGGGAGCCTCGGCACCATCAGCACCTAGGCCCCTGGTCATGCGGGAGCCTCGGCACCATCAGCAA
CCTAGGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGTGCTTAGATGTA
Found at i:64637389 original size:43 final size:42
Alignment explanation
Indices: 64637342--64637448 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 42
64637332 TGGTCATGCG
*
64637342 GGAGCCTCGGGCACCATCGGCACCTTGCTGCCTCGGATGTGCA
1 GGAGCCTCGGGCACCATAGGCACCTTGCTG-CTCGGATGTGCA
* * * * * * **
64637385 GGAGCCTCGAGCAGCATTGGCACTTTGGTGCTTGGATGTGTG
1 GGAGCCTCGGGCACCATAGGCACCTTGCTGCTCGGATGTGCA
*
64637427 GGAGCCTCGGACACCATAGGCA
1 GGAGCCTCGGGCACCATAGGCA
64637449 ACCTAGGACG
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
42 27 0.52
43 25 0.48
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.21
Consensus pattern (42 bp):
GGAGCCTCGGGCACCATAGGCACCTTGCTGCTCGGATGTGCA
Found at i:64637433 original size:42 final size:43
Alignment explanation
Indices: 64637338--64637514 Score: 130
Period size: 43 Copynumber: 4.1 Consensus size: 43
64637328 CCCTTGGTCA
*
64637338 TGCGGGAGCCTCGGGCACCATCGGCACCTTGCTGCCTCGGATG
1 TGCGGGAGCCTCGAGCACCATCGGCACCTTGCTGCCTCGGATG
* * * * * *
64637381 TGCAGGAGCCTCGAGCAGCATTGGCACTTTGGTG-CTTGGATG
1 TGCGGGAGCCTCGAGCACCATCGGCACCTTGCTGCCTCGGATG
* * * * *
64637423 TGTGGGAGCCTCG-GACACCATAGGCAACCTAG--GACGTTGGATG
1 TGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGCTG-CCTCGGATG
* ** * *
64637466 TGC-GGATGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGATG
1 TGCGGGA-GCCTCGAGCACCATCGGCACCTTGCTGCCTCGGATG
64637509 TGCGGG
1 TGCGGG
64637515 CTAAAGAAAA
Statistics
Matches: 103, Mismatches: 22, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
41 2 0.02
42 33 0.32
43 64 0.62
44 4 0.04
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (43 bp):
TGCGGGAGCCTCGAGCACCATCGGCACCTTGCTGCCTCGGATG
Found at i:64637467 original size:43 final size:42
Alignment explanation
Indices: 64637248--64637478 Score: 177
Period size: 43 Copynumber: 5.4 Consensus size: 42
64637238 ATCGTGCTTA
* *
64637248 GATGTACGGGAGCCTCGGACACCATCGGCAACTTAGGCCCTTG
1 GATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCTTG
* *
64637291 G-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTG
1 GAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCTTG
* * * *
64637334 G-TCATGCGGGAGCCTCGGGCACCATCGGC-ACCTTGCTGCCTCG
1 GAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAG--GCCTTG
* * * * * *
64637377 GATGTGCAGGAGCCTC-GAGCAGCATTGGC-ACTTTGGTGCTTG
1 GATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGG-CCTTG
* * *
64637419 GATGTGTGGGAGCCTCGGACACCATAGGCAACCTAGGACGTTG
1 GATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCTTG
64637462 GATGTGC-GGATGCCTCG
1 GATGTGCGGGA-GCCTCG
64637479 AGCAGCAGGG
Statistics
Matches: 153, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 35 0.23
43 115 0.75
44 2 0.01
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (42 bp):
GATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCTTG
Found at i:64641250 original size:42 final size:41
Alignment explanation
Indices: 64641193--64641291 Score: 119
Period size: 42 Copynumber: 2.4 Consensus size: 41
64641183 GGTTGTGCAG
* ** *
64641193 GAGCCTCGGTGACCATC-AGCACCTTGGTGCTCGGATGTGCGG
1 GAGCCTCGG-CACCATCGA-CACCTTGGTGCAAGGATGTGCGA
*
64641235 GAGCCCTTGGCACCATCGACACCTTGGTGCAAGGATGTGCGA
1 GAG-CCTCGGCACCATCGACACCTTGGTGCAAGGATGTGCGA
64641277 GAGCCTCGGCACCAT
1 GAGCCTCGGCACCAT
64641292 TGGCAACCTA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
41 11 0.22
42 32 0.65
43 6 0.12
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.19
Consensus pattern (41 bp):
GAGCCTCGGCACCATCGACACCTTGGTGCAAGGATGTGCGA
Found at i:64641429 original size:128 final size:128
Alignment explanation
Indices: 64641271--64642284 Score: 1135
Period size: 128 Copynumber: 7.9 Consensus size: 128
64641261 GTGCAAGGAT
* *
64641271 GTGCGAGAGCCTCGGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATC
* * *
64641336 GGCAACCTAGGCCCTTGGTCGTACAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64641399 GTGCGAGAGCCTCGGCACCATCCGTAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCCA-
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCA-CCAT
* * *
64641463 CGGCAACCTAAGCCCTTGGTCGTACGGGAGCCTCGGACACCCA-CGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * * *
64641527 GTACGGGAGCCTCGGACACCATCGG-TACCTTGGCACTTAGAT-GTACGGAATCCTCGGACACCA
1 GTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTT-GGTCGTACGGGAGCCTCGGGCACCA
* * * * *
64641590 TCGGTAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAACCTTGGCACTTGGT
64 TCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
64641654 C
128 C
* * * * *
64641655 GTGC-AGGAGTCTCGGCACTATCGGCAACCTAGGCCCCTT-GTCGTGCGAGAGCCT-TGGCACCA
1 GTGCGA-GAGCCTCGGCACCATCGGCAACCTAGG-CCCTTGGTCGTACGGGAGCCTCGGGCACCA
* * * *
64641717 TCGGTAACCTAGCCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
64641782 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATC
* * *
64641847 CGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
64641910 GTGCGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCAT
1 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCAT
* * * *
64641975 CGGC-ACCTAGG-CCTCTGGTCGTGCTGGAGCCTTGGGCACCATCGACAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** ** *
64642038 GTGCGGGAGCCTCGGGCACCATCAGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCA
1 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCA
*
64642101 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * ** *
64642166 ATGCGGGAGCCTCGGGCACCATCGGC-ACCT-TGCTGCCTCGGAT-GTGCGGGAGCCTCAAGCAG
1 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGC--CCTTGG-TCGTACGGGAGCCTCGGGCAC
* * ** * *
64642228 CATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
62 CATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
64642285 ACGTTGGATG
Statistics
Matches: 769, Mismatches: 94, Indels: 46
0.85 0.10 0.05
Matches are distributed among these distances:
126 5 0.01
127 155 0.20
128 505 0.66
129 104 0.14
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.18
Consensus pattern (128 bp):
GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATC
GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:64641436 original size:85 final size:85
Alignment explanation
Indices: 64641271--64642284 Score: 1110
Period size: 85 Copynumber: 11.9 Consensus size: 85
64641261 GTGCAAGGAT
* * * *
64641271 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
64641335 CGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * *
64641356 GTACAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
* *
64641421 CGTAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * *
64641441 GTACGGGAGCCTCGGACACCCA-CGGCAACCTAAGCCCTTGGTCGTACGGGAGCCTCGGACACCC
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CA-CC
64641505 A-CGGCAACCTAGGCCCTTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* * * * * * * * *
64641527 GTACGGGAGCCTCGGACACCATCGG-TACCTTGGCACTTAGAT-GTACGGAATCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGG-CACCA
*
64641590 TCGGTAACCTAGGCCCTTGGAT-
64 TCGGCAACCTAGGCCCTTGG-TC
* * * * * * *
64641612 GTGCGGAAGCCTCGGACACCATCGGCAACCTTGGCACTTGGTCGTGCAGGAGTCTCGGCACTATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
64641677 GGCAACCTAGGCCCCTT-GTC
66 GGCAACCTAGG-CCCTTGGTC
* * * * *
64641697 GTGCGAGAGCCT-TGGCACCATCGGTAACCTAGCCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
*
64641761 CGGCAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* *
64641782 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
* *
64641846 CCGCAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* *
64641867 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
*
64641932 CGGCAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * *
64641953 GTGCGGGATCCTCGGGCACCATCGGC-ACCTAGG-CCTCTGGTCGTGCTGGAGCCTTGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCC-TCGGCACCA
* *
64642016 TCGACAACCTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* ** ** *
64642038 GTGCGGGAGCCTCGGGCACCATCAGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCA
64642101 TCGGCAACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* *
64642123 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCAT
* *
64642188 CGGC-ACCT-TGCTGCCTCGGAT-
65 CGGCAACCTAGGC--CCTTGG-TC
** * * * **
64642209 GTGCGGGAGCCTCAAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCA
*
64642272 TAGGCAACCTAGG
64 TCGGCAACCTAGG
64642285 ACGTTGGATG
Statistics
Matches: 805, Mismatches: 93, Indels: 60
0.84 0.10 0.06
Matches are distributed among these distances:
84 51 0.06
85 474 0.59
86 273 0.34
87 7 0.01
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:64642307 original size:43 final size:43
Alignment explanation
Indices: 64641271--64642284 Score: 1150
Period size: 43 Copynumber: 23.8 Consensus size: 43
64641261 GTGCAAGGAT
* * *
64641271 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGACCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64641313 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64641356 GTACAGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64641399 GTGCGAGAGCCTC-GGCACCATCCGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64641441 GTACGGGAGCCTCGGACACCCA-CGGCAACCTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
* *
64641484 GTACGGGAGCCTCGGACACCCA-CGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
64641527 GTACGGGAGCCTCGGACACCATCGG-TACCTTGGCACTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * * *
64641569 GTACGGAATCCTCGGACACCATCGGTAACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
64641612 GTGCGGAAGCCTCGGACACCATCGGCAACCTTGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64641655 GTGCAGGAGTCTC-GGCACTATCGGCAACCTAGGCCCCTT-GTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTC
* * * * *
64641697 GTGCGAGAGCCT-TGGCACCATCGGTAACCTAGCCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64641739 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
64641782 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
64641824 GTGCGGGAGCCTCGGGCACCATCCGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64641867 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
64641910 GTGCGGGAGCGTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64641953 GTGCGGGATCCTCGGGCACCATCGGC-ACCTAGG-CCTCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* * * *
64641995 GTGCTGGAGCCTTGGGCACCATCGACAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** **
64642038 GTGCGGGAGCCTCGGGCACCATCAGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
64642080 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
64642123 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64642166 ATGCGGGAGCCTCGGGCACCATCGGC-ACCT-TGCTGCCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC--CCTTGG-TC
** * * * **
64642209 GTGCGGGAGCCTCAAGCAGCATTGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
64642251 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
64642285 ACGTTGGATG
Statistics
Matches: 847, Mismatches: 101, Indels: 47
0.85 0.10 0.05
Matches are distributed among these distances:
41 8 0.01
42 287 0.34
43 545 0.64
44 7 0.01
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:64655963 original size:24 final size:24
Alignment explanation
Indices: 64655888--64655965 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
64655878 CCGGTTAGGT
*
64655888 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* * **
64655912 TTCCGGCGGTGCTCCGACGAGCTT
1 TCCCGGCGGTGCTCCGGCGAGCCA
**
64655936 TCCCGGCGGTGCTCCGGTTAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
64655960 TCCCGG
1 TCCCGG
64655966 AATATAGAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.08, C:0.38, G:0.33, T:0.21
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:64656341 original size:42 final size:42
Alignment explanation
Indices: 64656287--64656392 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 42
64656277 GGCTCTTGGT
* **
64656287 TGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTGGTGCTCGGA
1 TGTGCGGGAGCCTCGG-GCACCATCAGCACCTTGGTGCAAGGA
* *
64656329 TGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGA
1 TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
*
64656371 TGTGCGAGAGCCTC-GGCACCAT
1 TGTGCGGGAGCCTCGGGCACCAT
64656393 TGGCAATCTA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
41 9 0.16
42 47 0.84
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (42 bp):
TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
Found at i:64656441 original size:43 final size:43
Alignment explanation
Indices: 64656378--64656994 Score: 761
Period size: 43 Copynumber: 14.5 Consensus size: 43
64656368 GGATGTGCGA
* * *
64656378 GAGCCTC-GGCACCATTGGCAATCTAGGACCTTGGTCGTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
64656420 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
* * *
64656463 GAGCCTCGGGCACCATCAGCAGCCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
*
64656506 GAGCCTCGGACACCCA-CGGCAACCTAGGCCCTTGGTCGTACGG
1 GAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTCGTACGG
* * * *
64656549 GAGCCTCGGACACCATCGGC-ACCTTGGCGCTTAGAT-GTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTACGG
* * *
64656591 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTACGG
* * * * * *
64656634 AAGCCTCGGACACCATCGGCAACCTCGGCACTTGGTCATGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
* * *
64656677 GAGCCTC-GGCACCATTGGCAACCTAGGCCCCTGGTCGTACGA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
* *
64656719 GAGCCTC-GGCACCATCGGTAACCTAGGCCCCTGGTCGTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
*
64656761 GAGCCTCGGGCACCATCGGC-ACCTAGG-CCTCTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTACGG
* * *
64656803 GAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
** **
64656846 GAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTACGG
* *
64656888 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
* * * *
64656931 GAGCCTCGGGCACCATCGGTAACCTAGGTCCTTGGTCGTGCAG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
64656974 GAGCCTCGGGCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCA
64656995 CCTTGCTGCC
Statistics
Matches: 503, Mismatches: 58, Indels: 27
0.86 0.10 0.05
Matches are distributed among these distances:
41 2 0.00
42 191 0.38
43 305 0.61
44 5 0.01
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (43 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGG
Found at i:64656641 original size:85 final size:85
Alignment explanation
Indices: 64656254--64656997 Score: 726
Period size: 85 Copynumber: 8.8 Consensus size: 85
64656244 GCCTCAGACA
* * ** * * ** *
64656254 CCTCGGACACCATCGACAAAATAGGCTCTTGGTTGTGC-AGGAGCCTCGGTGACCATCAGCACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGACACCATCGGCACCT
* ** *
64656318 TGGTGCTCGGAT-GTGCGGGAG
65 AGGCCCTTGG-TCGTGCGGGAG
* * ** ** * *
64656339 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGCCTCGG-CACCATTGGCAATC
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGACACCATCGGC-ACC
* *
64656401 TAGGACCTTGGTCGTACGGGAG
64 TAGGCCCTTGGTCGTGCGGGAG
* * * *
64656423 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCAGCAGCCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCA-CCT
64656488 AGGCCCTTGGTCGTGCGGGAG
65 AGGCCCTTGGTCGTGCGGGAG
* * *
64656509 CCTCGGACACCCA-CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCACCT
1 CCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCACCT
* * * *
64656573 TGGCGCTTAGAT-GTACGGGAG
65 AGGCCCTT-GGTCGTGCGGGAG
* *
64656594 CCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGAAAGCCTCGGACACCATCGGCAACC
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGACACCATCGGC-ACC
* * *
64656658 TCGGCACTTGGTCATGCGGGAG
64 TAGGCCCTTGGTCGTGCGGGAG
* * * *
64656680 CCTC-GGCACCATTGGCAACCTAGGCCCCTGGTCGTACGAGAGCCTCGG-CACCATCGGTAACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGG-CACCT
* *
64656743 AGGCCCCTGGTCGTACGGGAG
65 AGGCCCTTGGTCGTGCGGGAG
* * *
64656764 CCTCGGGCACCATCGGC-ACCTAGG-CCTCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACC
1 CCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGACACCATCGG-CACC
*
64656827 TAGGCCCCTGGTCGTGCGGGAG
64 TAGGCCCTTGGTCGTGCGGGAG
** ** * *
64656849 CCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACC
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGACACCATCGGC-ACC
64656912 TAGGCCCTTGGTCGTGCGGGAG
64 TAGGCCCTTGGTCGTGCGGGAG
* * *
64656934 CCTCGGGCACCATCGGTAACCTAGGTCCTTGGTCGTGC-AGGAGCCTCGGGCACCATCGGCACCT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGACACCATCGGCACCT
64656998 TGCTGCCTCA
Statistics
Matches: 557, Mismatches: 77, Indels: 50
0.81 0.11 0.07
Matches are distributed among these distances:
83 10 0.02
84 116 0.21
85 285 0.51
86 143 0.26
87 3 0.01
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (85 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCACCTA
GGCCCTTGGTCGTGCGGGAG
Found at i:64656953 original size:128 final size:128
Alignment explanation
Indices: 64656254--64656997 Score: 821
Period size: 128 Copynumber: 5.8 Consensus size: 128
64656244 GCCTCAGACA
* ** * * * *
64656254 CCTCGGACACCATCGACAAAATAGGCTCTTGGTTGTGCAGGAGCCTCGGTG-ACCATCAGC-ACC
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-GCACCATCGGCAACC
* ** * * * * ** ** *
64656317 TTGGTGCTCGGAT-GTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGATGTGCGAGAG
65 TAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAG
* * * *
64656381 CCTCGG-CACCATTGGCAATCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
*
64656445 AGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCAGCAGCCTAGGCCCTTGG-TCGTGCGGGAG
66 AGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCA-CCTAGGCCCTTGGAT-GTGCGGGAG
* *
64656509 CCTCGGACACCCA-CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGC-ACC
1 CCTCGGACA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
64656572 TTGGCGCTTAGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGAAA
65 TAGGCCCTT-GGTCGTACGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGATGTGCGGGA
64656636 G
128 G
* * * *
64656637 CCTCGGACACCATCGGCAACCTCGGCACTTGGTCATGCGGGAGCCTC-GGCACCATTGGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* * * * *
64656701 AGGCCCCTGGTCGTACGAGAGCCTC-GGCACCATCGGTAACCTAGGCCCCTGG-TCGTACGGGAG
66 AGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGAT-GTGCGGGAG
* *
64656764 CCTCGGGCACCATCGGC-ACCTAGG-CCTCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACC
1 CCTCGGACACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * ** ** *
64656827 TAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTCGTGCTTGGATGTACGGGAG
65 TAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAG
*
64656891 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* * *
64656956 AGGTCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCT
66 AGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCACCT
64656998 TGCTGCCTCA
Statistics
Matches: 527, Mismatches: 69, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
125 3 0.01
126 66 0.13
127 173 0.33
128 230 0.44
129 52 0.10
130 3 0.01
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (128 bp):
CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
AGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAG
Found at i:64664842 original size:24 final size:24
Alignment explanation
Indices: 64664775--64664842 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
64664765 GTTCCCAGTA
* **
64664775 GTGCTCCGGCGATCCATTTCGGCG
1 GTGCTCCGGCGACCCATCCCGGCG
* **
64664799 GTGCTCCGGCGAGCTTTCCCGGCG
1 GTGCTCCGGCGACCCATCCCGGCG
*
64664823 GTGCTCCGGTGACCCATCCC
1 GTGCTCCGGCGACCCATCCC
64664843 AGAATATAGA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.07, C:0.38, G:0.32, T:0.22
Consensus pattern (24 bp):
GTGCTCCGGCGACCCATCCCGGCG
Found at i:64665238 original size:42 final size:41
Alignment explanation
Indices: 64665182--64665279 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 41
64665172 GTTGTGTAGT
* ** *
64665182 AGCCTCGGTGACCATCAGCACCTTAGTGCTCGGATCTGCGGG
1 AGCCTCGG-CACCATCAGCACCTTAGTGCAAGGATCTGCGAG
* * * *
64665224 AGCCTTGGGCACCATCGGCACCTTGGTGCAAGGATGTGCGAG
1 AGCC-TCGGCACCATCAGCACCTTAGTGCAAGGATCTGCGAG
64665266 AGCCTCGGCACCAT
1 AGCCTCGGCACCAT
64665280 TGGCAATCTA
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
41 9 0.20
42 34 0.74
43 3 0.07
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (41 bp):
AGCCTCGGCACCATCAGCACCTTAGTGCAAGGATCTGCGAG
Found at i:64665390 original size:85 final size:85
Alignment explanation
Indices: 64665259--64665930 Score: 603
Period size: 85 Copynumber: 7.9 Consensus size: 85
64665249 GTGCAAGGAT
* * * * * *
64665259 GTGCGAGAGCCTC-GGCACCATTGGCAATCTAGGACCTTGGTCGTACGGGAGCCTCGGAAACCCA
1 GTGCGGGAGCCTCGGGCACCATCGG-TACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACA-CCA
*
64665323 -CGGCAACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCCTGGTC
* * * * * *
64665344 ATACGGGAGCCTCGGACACCATCGGTACCTTGGCGCTTAGAT-GTACGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCCCTT-GGTCGTACGGGAGCCTCGGACACCAT
*
64665408 CGGCAACCTAGGCCCTTGGAT-
65 CGGCAACCTAGGCCCCTGG-TC
** * * * * *
64665429 GTGCGAAAGCCTCGGACACCATCGGTAGCCTAGGCACTTGGTCGTGCAGGAGTCTCGG-CACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGTA-CCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCAT
*
64665493 CGGCAACCTAGGCCCCTAGTC
65 CGGCAACCTAGGCCCCTGGTC
* * * * *
64665514 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-TACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCAT
*
64665578 CAGCAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCCTGGTC
* ** * * * * *
64665599 GTGCGGGAGCGTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGCAGGATCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCG-GTACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCAT
64665664 CGGC-ACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCCTGGTC
* ** ** **
64665684 GTGCGGGAGCCTCGGGCACCATCGGCACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACTGT
1 GTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGACACCAT
*
64665748 CGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCCTGGTC
* * * *
64665769 GTGCGGGAGCCTTGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGT-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCAT
* *
64665834 CGGC-ACCT-TGCTGCCTCGGAT-
65 CGGCAACCTAGGC-CCCT-GG-TC
* ** * * * ** *
64665855 GTGCGGGAGCCTCGAGCAGTATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGACACCAT
*
64665919 AGGCAACCTAGG
65 CGGCAACCTAGG
64665931 ACATTGGATG
Statistics
Matches: 485, Mismatches: 81, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
84 71 0.15
85 271 0.56
86 141 0.29
87 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCCTGGTC
Found at i:64665502 original size:170 final size:170
Alignment explanation
Indices: 64665141--64665953 Score: 734
Period size: 170 Copynumber: 4.8 Consensus size: 170
64665131 GCCTCAGACA
* * * * * ** * ** *
64665141 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGTAGTAGCCTCGGTGACCATCAGCACCTT
1 CCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTT
* * * * * * * * ** ** *
64665206 AGTGCTCGGATCTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCAAGGATGTGCGAGAGCC
65 GGCGCTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCC
* * * *
64665270 TC-GGCACCATTGGCAATCTAGG-ACCTTGGTCGTACGGGAG
130 TCGGGCACCATCGGCAACCTAGGCA-CTTGGTCGTGCAGGAG
** * * * *
64665310 CCTCGGAAACCCA-CGGCAACCTAGGCCCTTGGTCATACGGGAGCCTCGGACACCATCGGTACCT
1 CCTCGGGCA-CCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCT
* **
64665374 TGGCGCTTAGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGAAAGC
64 TGGCGCTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGC
* * *
64665439 CTCGGACACCATCGGTAGCCTAGGCACTTGGTCGTGCAGGAG
129 CTCGGGCACCATCGGCAACCTAGGCACTTGGTCGTGCAGGAG
* * *
64665481 TCTC-GGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCT
1 CCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCT
* * * * * * *
64665544 AGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGG-TCGTGCGGGA
64 TGGCGCTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGA
* * * * *
64665607 GCGTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGCAGGAT
127 GCCTCGGGCACCATCGGCAACCTAGGCACTTGGTCGTGCAGGAG
* *
64665651 CCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTC
1 CCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTTG
* **
64665716 GTGCTTGGATGTACGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCC
66 GCGCTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCC
* * * * *
64665780 TTGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAG
130 TCGGGCACCATCGGCAACCTAGGCACTTGGTCGTGCAGGAG
* * ** *
64665821 CCTCGGGCACCATCGGCACCT-TGCTGCCTCGGAT-GTGCGGGAGCCTC-GAGCAGTATTGGCAC
1 CCTCGGGCACCATCGGCACCTAGGC-CCCT-GG-TCGTGCGGGAGCCTCGGA-CACCATCGGCAC
* * * * *
64665883 CTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACATTGGATGTGC-GGA
62 CTTGGCGCTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGGGA
64665947 TGCCTCG
127 -GCCTCG
64665954 AGCAGCAGGG
Statistics
Matches: 530, Mismatches: 97, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
169 93 0.18
170 298 0.56
171 136 0.26
172 3 0.01
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (170 bp):
CCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTTG
GCGCTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCT
CGGGCACCATCGGCAACCTAGGCACTTGGTCGTGCAGGAG
Found at i:64665953 original size:43 final size:43
Alignment explanation
Indices: 64665141--64665930 Score: 652
Period size: 43 Copynumber: 18.6 Consensus size: 43
64665131 GCCTCAGACA
* * * * ** *
64665141 CCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGTAGTAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
64665184 CCTCGGTG-ACCATCAGC-ACCTTAGTG--CTCGGATC-TGCGGGAG
1 CCTCGG-GCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAG
* * ** ** *
64665226 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * *
64665268 CCTC-GGCACCATTGGCAATCTAGGACCTTGGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
** * *
64665310 CCTCGGAAACCCA-CGGCAACCTAGGCCCTTGGTCATACGGGAG
1 CCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * * *
64665353 CCTCGGACACCATCGG-TACCTTGGCGCTTAGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAG
* **
64665395 CCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGAAAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * * *
64665438 CCTCGGACACCATCGGTAGCCTAGGCACTTGGTCGTGCAGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
64665481 TCTC-GGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
64665523 CCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
64665565 CCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * *
64665608 CGTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGCAGGAT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
64665651 CCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
** ** *
64665693 CCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* **
64665735 CCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
64665778 CCTTGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
64665821 CCTCGGGCACCATCGGC-ACCT-TGCTGCCTCGGAT-GTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGC--CCTTGG-TCGTGCGGGAG
* ** * * **
64665864 CCTCGAGCAGTATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* *
64665906 CCTCGGACACCATAGGCAACCTAGG
1 CCTCGGGCACCATCGGCAACCTAGG
64665931 ACATTGGATG
Statistics
Matches: 611, Mismatches: 110, Indels: 52
0.79 0.14 0.07
Matches are distributed among these distances:
40 1 0.00
41 17 0.03
42 276 0.45
43 311 0.51
44 6 0.01
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (43 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
Found at i:64665983 original size:43 final size:43
Alignment explanation
Indices: 64665813--64665989 Score: 155
Period size: 43 Copynumber: 4.1 Consensus size: 43
64665803 CCCTTGGTCA
* * * * *
64665813 TGCGGGAGCCTCGGGCACCATCGGCACCTTGCTGCCTCGGATG
1 TGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGATG
* * * *
64665856 TGCGGGAGCCTCGAGCAGTATTGGCACCTTGGTG-CTTGGATG
1 TGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGATG
* * * * *
64665898 TGCGGGAGCCTCG-GACACCATAGGCAACCTAGG-ACATTGGATG
1 TGCGGGAGCCTCGAG-CAGCATAGGCACCCT-GGTGCCTCGGATG
**
64665941 TGC-GGATGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGATG
1 TGCGGGA-GCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGATG
64665984 TGCGGG
1 TGCGGG
64665990 CTAAAGAAAA
Statistics
Matches: 107, Mismatches: 20, Indels: 13
0.76 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 35 0.33
43 68 0.64
44 3 0.03
ACGTcount: A:0.16, C:0.28, G:0.37, T:0.19
Consensus pattern (43 bp):
TGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGATG
Found at i:64672525 original size:24 final size:24
Alignment explanation
Indices: 64672455--64672525 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
64672445 GCCGGTTAGG
* *
64672455 TTCCCGGCGGTGCTCCGGCAATCCA
1 TTCCCGGCGGTGCTCCGGCGA-GCA
*
64672480 TT-CCGGCGGTGCTCCGGCGAGCT
1 TTCCCGGCGGTGCTCCGGCGAGCA
*
64672503 TTCCCGGCGGTGCTCCGGTGAGC
1 TTCCCGGCGGTGCTCCGGCGAGC
64672526 CATCTCAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
23 3 0.07
24 36 0.88
25 2 0.05
ACGTcount: A:0.07, C:0.37, G:0.35, T:0.21
Consensus pattern (24 bp):
TTCCCGGCGGTGCTCCGGCGAGCA
Found at i:64672978 original size:43 final size:43
Alignment explanation
Indices: 64672906--64673566 Score: 692
Period size: 43 Copynumber: 15.5 Consensus size: 43
64672896 GTGCAAGGAT
* * * * ** *
64672906 GTGCGAGAGCCTC-GGCACCTTTGGAAACCTAGAACTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
**
64672948 GTATGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
64672991 GTACGAGAGCCTCGGGCAGCATCGGCAATCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64673034 ATGCGAGAGCCTC-GGCACCATCTGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
64673076 GTGCGGGAGCCTCGGACAACATCAGAAACCTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
64673119 GTACGGGAGCCTCGGACACTATCGGC-ACCTTGGCGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
64673161 GTACGGGAGCCTCAGACACCATCGGTAACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
64673204 GTACGGAAGCCTCGGACACCATCGGCAACCTAGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
64673247 GTGCGGGAGTCTC-GGCACCATCGGCAACCTAGACCCCTGGTA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
64673289 GTGCGAGAGCCTC-GGCACCATCGGTAACCTAGGCCCCAGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
64673331 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64673374 GTGCGGGAGCATCGGGCACCATCGGCAACCTACGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * * * *
64673417 GTGTAGGATCCTCAGGAACCATCGGCAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64673460 GTGTGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
64673502 GTGCGGGAGCCTCAGGG-ACTATTGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTC-GGGCACCATCGGCAACCTAGGCCCTTGGTC
64673545 GTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCAT
64673567 TAGCACCTTC
Statistics
Matches: 528, Mismatches: 82, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
42 189 0.36
43 339 0.64
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:64673051 original size:85 final size:86
Alignment explanation
Indices: 64672954--64673566 Score: 677
Period size: 85 Copynumber: 7.2 Consensus size: 86
64672944 GGTCGTATGG
* *
64672954 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCAGCATCGGCAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAA
* * *
64673019 TCTAGGCCCTTGGTCATGCGA
66 CCTAGGCCCCTGGTCGTGCGA
* * * * * *
64673040 GAGCCTC-GGCACCATCTGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACAACATCAGAAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAA
** * *
64673104 CCTAGGCCTTTGGTCGTACGG
66 CCTAGGCCCCTGGTCGTGCGA
* * * * * * *
64673125 GAGCCTCGGACACTATCGGC-ACCTTGGCGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGTA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCATCGGCA
* *
64673188 ACCTAGGCCCTTGGAT-GTACG-
65 ACCTAGGCCCCTGG-TCGTGCGA
* * * *
64673209 GAAGCCTCGGACACCATCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTC-GGCACCATCGGCA
1 G-AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCA
* *
64673273 ACCTAGACCCCTGGTAGTGCGA
65 ACCTAGGCCCCTGGTCGTGCGA
* **
64673295 GAGCCTC-GGCACCATCGGTAACCTAGGCCCCAGGTCGTACGGGAGCCTCGGGCACCATCGGCAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAA
*
64673359 CCTAGGCCCCTGGTCGTGCGG
66 CCTAGGCCCCTGGTCGTGCGA
* * * *** * * *
64673380 GAGCATCGGGCACCATCGGCAACCTACGCCCCTGGTCGTGTAGGATCCTCAGGAACCATCGGCAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAA
* *
64673445 CCTAGGCCCCTAGTCGTGTGA
66 CCTAGGCCCCTGGTCGTGCGA
* * * *
64673466 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGG-ACTATTGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTC-GGGCACCATCGGCA
*
64673529 ACCTAGGCCCCTGGTCGTGCGG
65 ACCTAGGCCCCTGGTCGTGCGA
64673551 GAGCCTCGGGCACCAT
1 GAGCCTCGGGCACCAT
64673567 TAGCACCTTC
Statistics
Matches: 449, Mismatches: 67, Indels: 23
0.83 0.12 0.04
Matches are distributed among these distances:
84 37 0.08
85 283 0.63
86 129 0.29
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (86 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCCTGGTCGTGCGA
Found at i:64673084 original size:128 final size:128
Alignment explanation
Indices: 64672907--64673566 Score: 678
Period size: 128 Copynumber: 5.2 Consensus size: 128
64672897 TGCAAGGATG
* * * ** * *
64672907 TGCGAGAGCCTC-GGCACCTTTGGAAACCTAGAACTTTGGTCGTATGGGAGCCTCGGGCACCATC
1 TGCGAGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATC
* * * *
64672971 GGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCAGCATCGGCAATCTAGGCCCTTGGTCA
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA-CATCGGCAACCTAGGCCCCTGGTCA
* * * *
64673035 TGCGAGAGCCTC-GGCACCATCTGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACAACATC
1 TGCGAGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATC
* * * * * * * *
64673099 AGAAACCTAGGCCTTTGGTCGTACGGGAGCCTCGGACACTATCGGC-ACCTTGGCGCTTGG--A
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC-ATCGGCAACCTAGGCCCCTGGTCA
* * * * *
64673160 TGTACGGGAGCCTCAGACACCATCGGTAACCTAGGCCCTTGGAT-GTACGGAAGCCTCGGACACC
1 TG--CGAGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACC
* * *
64673224 ATCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTC-GGCACCATCGGCAACCTAGACCCCTGGT
63 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA-CATCGGCAACCTAGGCCCCTGGT
64673288 -A
127 CA
* **
64673289 GTGCGAGAGCCTC-GGCACCATCGGTAACCTAGGCCCCAGGTCGTACGGGAGCCTCGGGCACCAT
1 -TGCGAGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCAT
* * * *
64673353 CGGCAACCTAGGCCCCTGGTCGTGCGGGAGCATCGGGCACCATCGGCAACCTACGCCCCTGGTCG
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA-CATCGGCAACCTAGGCCCCTGGTCA
* * * * * ** *
64673418 TG-TAGGATCCTCAGGAACCATCGGCAACCTAGGCCCCTAGTCGTGTGAGAGCCTCGGGCACCAT
1 TGCGA-GAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCAT
* *
64673482 CGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGG-ACTATTGGCAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGGCAC-ATCGGCAACCTAGGCCCCTGGTC
*
64673545 G
128 A
* *
64673546 TGCGGGAGCCTCGGGCACCAT
1 TGCGAGAGCCTCAGGCACCAT
64673567 TAGCACCTTC
Statistics
Matches: 448, Mismatches: 67, Indels: 34
0.82 0.12 0.06
Matches are distributed among these distances:
125 3 0.01
126 1 0.00
127 106 0.24
128 283 0.63
129 53 0.12
130 2 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (128 bp):
TGCGAGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATC
GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACATCGGCAACCTAGGCCCCTGGTCA
Found at i:64673193 original size:213 final size:213
Alignment explanation
Indices: 64672943--64673566 Score: 715
Period size: 213 Copynumber: 2.9 Consensus size: 213
64672933 CCTAGAACTT
*
64672943 TGGTCGTATGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGC
1 TGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGC
* * * * *
64673008 AGCATCGGCAATCTAGGCCCTTGGTCATGCGAGAGCCTCGGCACCATCTGCAACCTAGGCCCTTG
66 ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCCTG
***
64673073 GTCGTGCGGGAGCCTCGGACAACATCAGAAACCTAGGCCTTTGGTCGTACGGGAGCCTCGGACAC
131 GTCGTGCGGGAGCCTCGG-CAACATCAGAAACCTAGGCCCCAGGTCGTACGGGAGCCTCGGACAC
* * * *
64673138 TATCGGC-ACCTTGGCGCT
195 CATCGGCAACCTAGGCCCC
* * *
64673156 TGGAT-GTACGGGAGCCTCAGACACCATCGGTAACCTAGGCCCTTGGAT-GTACG-GAAGCCTCG
1 TGG-TCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTACGAG-AGCCTCG
* * * * *
64673218 GACACCATCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTCGGCACCATCGGCAACCTAGACCC
63 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCC
* * * * * *
64673283 CTGGTAGTGCGAGAGCCTCGGCACCATCGGTAACCTAGGCCCCAGGTCGTACGGGAGCCTCGGGC
128 CTGGTCGTGCGGGAGCCTCGGCAACATCAGAAACCTAGGCCCCAGGTCGTACGGGAGCCTCGGAC
64673348 ACCATCGGCAACCTAGGCCCC
193 ACCATCGGCAACCTAGGCCCC
* * * * * *
64673369 TGGTCGTGCGGGAGCATCGGGCACCATCGGCAACCTACGCCCCTGGTCGT--GTAGGATCCTCAG
1 TGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACG-A-GAGCCTCGG
* * * *
64673432 GAACCATCGGCAACCTAGGCCCCTAGTCGTGTGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCC
64 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCC
* ** * * *
64673496 CTGGTCGTGCGGGAGCCTCAGG-GACTATTGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
128 CTGGTCGTGCGGGAGCCTC-GGCAAC-ATCAGAAACCTAGGCCCCAGGTCGTACGGGAGCCTCGG
*
64673560 GCACCAT
191 ACACCAT
64673567 TAGCACCTTC
Statistics
Matches: 346, Mismatches: 53, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
211 1 0.00
212 48 0.14
213 239 0.69
214 58 0.17
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (213 bp):
TGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGC
ACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCCTG
GTCGTGCGGGAGCCTCGGCAACATCAGAAACCTAGGCCCCAGGTCGTACGGGAGCCTCGGACACC
ATCGGCAACCTAGGCCCC
Found at i:64673702 original size:47 final size:47
Alignment explanation
Indices: 64673585--64674313 Score: 1278
Period size: 47 Copynumber: 15.3 Consensus size: 47
64673575 TCGTGCTTGG
64673585 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
64673634 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64673681 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64673728 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
64673777 ATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
64673826 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64673873 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64673920 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
64673969 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64674016 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64674063 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
64674112 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
64674159 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64674206 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
64674253 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
64674300 ATAAATGTGATAAG
1 ATATATGTGATAAG
64674314 TCCCGAAGGG
Statistics
Matches: 660, Mismatches: 14, Indels: 14
0.96 0.02 0.02
Matches are distributed among these distances:
47 426 0.65
49 234 0.35
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:64673780 original size:96 final size:94
Alignment explanation
Indices: 64673585--64674313 Score: 1278
Period size: 96 Copynumber: 7.6 Consensus size: 94
64673575 TCGTGCTTGG
64673585 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
64673650 CTAATGGCCGATGTGATGAATGTGAAAGTGT
64 CTAATGGCCGATGTGATGAATGTGAAAGTGT
64673681 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
64673746 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTG--T
*
64673777 ATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
64673842 CTAATGGCCGATGTGATGAATGTGAAAGTGT
64 CTAATGGCCGATGTGATGAATGTGAAAGTGT
64673873 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
64673938 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTG--T
64673969 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
64674034 AATGGCCGATGTGATGAATGTGAAAGTGT
66 AATGGCCGATGTGATGAATGTGAAAGTGT
64674063 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
64674128 CTAATGGCCGATGTGATGAATGTGAAAGTGT
64 CTAATGGCCGATGTGATGAATGTGAAAGTGT
*
64674159 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
64674224 AATGGCCGATGTGATGAATGTGAAAGTGT
66 AATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * * *
64674253 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64674314 TCCCGAAGGG
Statistics
Matches: 613, Mismatches: 12, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
94 241 0.39
96 325 0.53
98 47 0.08
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (94 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:64673876 original size:143 final size:142
Alignment explanation
Indices: 64673584--64674313 Score: 1261
Period size: 143 Copynumber: 5.1 Consensus size: 142
64673574 TTCGTGCTTG
64673584 GATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 GATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
64673649 CCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
64673712 ATGAATGTGAAAGT
129 ATGAATGTGAAAGT
64673726 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 G-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
*
64673791 GCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
63 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
64673856 GATGAATGTGAAAGT
128 GATGAATGTGAAAGT
64673871 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 G-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
64673936 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
65 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
64674001 TGAATGTGAAAGT
130 TGAATGTGAAAGT
64674014 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 G-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
64674079 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
65 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
64674144 TGAATGTGAAAGT
130 TGAATGTGAAAGT
*
64674157 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 G-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* * * * * *
64674222 CTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGA
65 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
*
64674285 TGGATGTGAAAGT
130 TGAATGTGAAAGT
*
64674298 GTATAAATGTGATAAG
1 G-ATATATGTGATAAG
64674314 TCCCGAAGGG
Statistics
Matches: 574, Mismatches: 11, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
141 54 0.09
142 1 0.00
143 425 0.74
145 94 0.16
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (142 bp):
GATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGT
Found at i:64674488 original size:37 final size:37
Alignment explanation
Indices: 64674432--64674510 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64674422 CCGAGCTCTA
* * *
64674432 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64674469 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64674506 AAGAC
1 AAGAC
64674511 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64688236 original size:13 final size:13
Alignment explanation
Indices: 64688218--64688242 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64688208 AAAAAAGAAT
64688218 GTCGCCTGGTAGG
1 GTCGCCTGGTAGG
64688231 GTCGCCTGGTAG
1 GTCGCCTGGTAG
64688243 CGCCTGGTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.24, G:0.44, T:0.24
Consensus pattern (13 bp):
GTCGCCTGGTAGG
Found at i:64689486 original size:20 final size:20
Alignment explanation
Indices: 64689457--64689494 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
64689447 CCATTTTTAA
* *
64689457 ATTTACATGGACCAAAATTG
1 ATTTAAATGGAACAAAATTG
64689477 ATTTAAATGGAACAAAAT
1 ATTTAAATGGAACAAAAT
64689495 GTTTTATCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (20 bp):
ATTTAAATGGAACAAAATTG
Found at i:64693112 original size:22 final size:22
Alignment explanation
Indices: 64693069--64693117 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
64693059 AAAGGCATCC
*
64693069 AAAAAGAAAAACAAAAGTACAA
1 AAAAAGAAAAACAAAAGAACAA
*
64693091 AAAAAGAAAAGCAATAA-AACAA
1 AAAAAGAAAAACAA-AAGAACAA
*
64693113 TAAAA
1 AAAAA
64693118 CAAAGGTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.78, C:0.08, G:0.08, T:0.06
Consensus pattern (22 bp):
AAAAAGAAAAACAAAAGAACAA
Found at i:64693684 original size:14 final size:13
Alignment explanation
Indices: 64693660--64693724 Score: 62
Period size: 13 Copynumber: 5.0 Consensus size: 13
64693650 AAAGAAAGAG
64693660 ATCAAAATAAAAA
1 ATCAAAATAAAAA
64693673 ATCAAAATTAAAAA
1 ATCAAAA-TAAAAA
* *
64693687 ATTAAAA-AATTAA
1 ATCAAAATAA-AAA
*
64693700 ATAAAAAT-AAAA
1 ATCAAAATAAAAA
*
64693712 ATAAAAATAAAAA
1 ATCAAAATAAAAA
64693725 TAAAAAAAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 12 0.27
13 20 0.45
14 12 0.27
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (13 bp):
ATCAAAATAAAAA
Found at i:64693687 original size:8 final size:8
Alignment explanation
Indices: 64693676--64693700 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
64693666 ATAAAAAATC
64693676 AAAATTAA
1 AAAATTAA
64693684 AAAATTAA
1 AAAATTAA
64693692 AAAATTAA
1 AAAATTAA
64693700 A
1 A
64693701 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATTAA
Found at i:64693693 original size:6 final size:6
Alignment explanation
Indices: 64693663--64693730 Score: 66
Period size: 6 Copynumber: 10.7 Consensus size: 6
64693653 GAAAGAGATC
* *
64693663 AAAATAA AAAATCA AAATTAA AAAATTAA AAAATT A-AATA AAAATA AAAATA
1 AAAAT-A AAAAT-A AAAAT-A AAAA-T-A AAAATA AAAATA AAAATA AAAATA
64693715 AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAA
64693731 AAGAAAGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
5 4 0.08
6 27 0.51
7 15 0.28
8 7 0.13
ACGTcount: A:0.79, C:0.01, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:64694922 original size:64 final size:63
Alignment explanation
Indices: 64694854--64695036 Score: 240
Period size: 64 Copynumber: 2.9 Consensus size: 63
64694844 TCACATCACA
* *
64694854 TTAGGAGCATTTCATTCACTTTGATCATAGTATCCTAATTATTTGACATCAGCATCACATCTAG
1 TTAGGAGCATTTGATTCA-TTTGATCATAGAATCCTAATTATTTGACATCAGCATCACATCTAG
** *
64694918 TTAGGAGCATTTGATTCATTTCGATCATAGCGTCCTAATTATTTGACATCATCATCACATCTAG
1 TTAGGAGCATTTGATTCATTT-GATCATAGAATCCTAATTATTTGACATCAGCATCACATCTAG
* * * * * *
64694982 TTAGGAGTACTTGATTCATTTTGATCATACAATCCTAATTAATTGGCATAAGCAT
1 TTAGGAGCATTTGATTCA-TTTGATCATAGAATCCTAATTATTTGACATCAGCAT
64695037 GATACATGAA
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
63 3 0.03
64 98 0.94
65 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (63 bp):
TTAGGAGCATTTGATTCATTTGATCATAGAATCCTAATTATTTGACATCAGCATCACATCTAG
Found at i:64695721 original size:44 final size:46
Alignment explanation
Indices: 64695638--64695733 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 46
64695628 AGCCATTAGC
** ** *
64695638 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAG-T
1 CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATTGAAGAT
64695682 CTTATCTTC-CTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCTCTGAGGTAGCAAGAG-AGCAGACTGAAGATTGAAGAT
64695727 CTTATCT
1 CTTATCT
64695734 CCTTAAGCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
43 1 0.02
44 33 0.75
45 10 0.23
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATTGAAGAT
Found at i:64695796 original size:177 final size:176
Alignment explanation
Indices: 64695235--64695792 Score: 825
Period size: 180 Copynumber: 3.1 Consensus size: 176
64695225 AAAGACGACA
* * * * *
64695235 AATCTTATCTCCATGTATCAGCAATAGAGCAGATTTTAGCCACTAACCATATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGCAATAGAGAAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAG
* *
64695300 CAAGAGAGCAGGTTGAAGATTG-AGTCTTATCTTCCTGAGGTAGCAAGGAACCTGACTGAAGATT
66 CAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
* * * **
64695364 -AAGGATCTTATCTCCCTCAGCAGTAGCAGAGCAGATCAAAGATGGCG
131 GAA-GATCTTATCTCCTTAAGCAGTTGTGGAGCAGATC-AAGATGGCG
* * *
64695411 AATCTTATCTCCATGTATCGGCAATAGAGTAGTTTTTAGCC-TCTAGCCTTATCTATCTGAGGTA
1 AATCTTATCTCCATGTATCGGCAATAGAGAAGATTTTAGCCAT-TAGCCTTATCTCTCTGAGGTA
* * *
64695475 GCAAGAGAGCAAGTTGAAGATGGTAGTCTTATCTTCCTAAGGTAGCAGCAAGGAAGCAGACTGAA
65 GCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGT---AGCAAGGAAGCAGACTGAA
*
64695540 GATTGAAGATCTTATCTCCTTAAGCAGTTGTGGAGCAGATGGAAGATGGCG
127 GATTGAAGATCTTATCTCCTTAAGCAGTTGTGGAGCAGAT-CAAGATGGCG
*
64695591 AATCTTATCTCCATGTATCGGCAATGGAGAAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGCAATAGAGAAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAG
**
64695656 CAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
64695721 GAAGATCTTATCTCCTTAAGCAGTTGTGGAGCAGATCAATGATGGCG
131 GAAGATCTTATCTCCTTAAGCAGTTGTGGAGCAGATCAA-GATGGCG
64695768 AATCTTATCTCCATGTATCGGCAAT
1 AATCTTATCTCCATGTATCGGCAAT
64695793 GGAGCAAATT
Statistics
Matches: 345, Mismatches: 28, Indels: 17
0.88 0.07 0.04
Matches are distributed among these distances:
176 79 0.23
177 109 0.32
180 154 0.45
181 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (176 bp):
AATCTTATCTCCATGTATCGGCAATAGAGAAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
GAAGATCTTATCTCCTTAAGCAGTTGTGGAGCAGATCAAGATGGCG
Found at i:64701005 original size:40 final size:40
Alignment explanation
Indices: 64700898--64701005 Score: 189
Period size: 40 Copynumber: 2.7 Consensus size: 40
64700888 TGGAAAAAAA
*
64700898 TATAACCGGGTTAAGTCCCGAAGGCATCCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
*
64700938 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
*
64700978 TATAACCGAGTTAAGTCCCGAAGGCATT
1 TATAACCGGGTTAAGTCCCGAAGGCATT
64701006 TGTACTGGTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
Found at i:64701027 original size:40 final size:40
Alignment explanation
Indices: 64700901--64701027 Score: 146
Period size: 40 Copynumber: 3.2 Consensus size: 40
64700891 AAAAAAATAT
* * * * *
64700901 AACCGGGTTAAGTCCCGAAGGCATCCGTGCGGGTTACTAT
1 AACCGAGTTAAGTCCCGAAGGCATTCGTACGGGTTATTAC
* * *
64700941 AACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
1 AACCGAGTTAAGTCCCGAAGGCATTCGTACGGGTTATTAC
* * *
64700981 AACCGAGTTAAGTCCCGAAGGCATTTGTACTGGTTGTTAC
1 AACCGAGTTAAGTCCCGAAGGCATTCGTACGGGTTATTAC
*
64701021 ATCCGAG
1 AACCGAG
64701028 CCAAATTCCG
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AACCGAGTTAAGTCCCGAAGGCATTCGTACGGGTTATTAC
Found at i:64708797 original size:40 final size:40
Alignment explanation
Indices: 64708742--64708858 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
64708732 TGGAAAAAAA
64708742 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
*
64708782 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
* *
64708822 TATAACCGGGTTAAGT-CCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
64708859 GTTACATCCG
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 19 0.26
40 55 0.74
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
Found at i:64709506 original size:14 final size:12
Alignment explanation
Indices: 64709457--64709510 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 12
64709447 ATAAAAACTC
64709457 ATATAAAATATA
1 ATATAAAATATA
64709469 ATATAATAATTATA
1 ATATAA-AA-TATA
* *
64709483 TTATAATA-ATA
1 ATATAAAATATA
64709494 ATATAAAAT-TA
1 ATATAAAATATA
64709505 AT-TAAA
1 ATATAAA
64709511 TAAAGAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
10 4 0.11
11 13 0.37
12 6 0.17
13 3 0.09
14 9 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATATAAAATATA
Found at i:64709585 original size:3 final size:3
Alignment explanation
Indices: 64709572--64709632 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
64709562 ATATATATTT
64709572 TAA TAA T-A TAA TAAA TAA TAA -AA TAA T-A TAA T-A TAA TAA T-A
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
64709613 TAA CTAAA TAA TAA AAA TAA
1 TAA -T-AA TAA TAA TAA TAA
64709633 AGTATATATA
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
2 10 0.21
3 31 0.65
4 5 0.10
5 2 0.04
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:64709743 original size:30 final size:29
Alignment explanation
Indices: 64709696--64709792 Score: 73
Period size: 28 Copynumber: 3.5 Consensus size: 29
64709686 TCATTAAAAT
*
64709696 AATATAATATATAATA-AAGATAATACAATA
1 AATATAA-A-ATAATATAAAATAATACAATA
64709726 AATATAAAATAATATAAAA-AGA-ACAATA
1 AATATAAAATAATATAAAATA-ATACAATA
* * *
64709754 AATATATAA-AATA-AATA-AATA-TATA
1 AATATAAAATAATATAAAATAATACAATA
*
64709779 AATAAAAAATAATA
1 AATATAAAATAATA
64709793 ATTTGATATT
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
25 11 0.19
26 9 0.16
27 4 0.07
28 21 0.37
29 5 0.09
30 7 0.12
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (29 bp):
AATATAAAATAATATAAAATAATACAATA
Found at i:64709774 original size:21 final size:21
Alignment explanation
Indices: 64709694--64709785 Score: 55
Period size: 21 Copynumber: 4.3 Consensus size: 21
64709684 AATCATTAAA
* *
64709694 ATAATATAATATATAATAAAGAT
1 ATAAAATAA-ATA-AATAAATAT
* *
64709717 AATACAATAAATATA-AAATAAT
1 -ATAAAATAAATAAATAAAT-AT
*
64709739 ATAAAA-AGAA-CAATAAATAT
1 ATAAAATA-AATAAATAAATAT
* *
64709759 ATAAAATAAATAAATATATAA
1 ATAAAATAAATAAATAAATAT
64709780 ATAAAA
1 ATAAAA
64709786 AATAATAATT
Statistics
Matches: 53, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
20 12 0.23
21 28 0.53
22 3 0.06
23 3 0.06
24 7 0.13
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
ATAAAATAAATAAATAAATAT
Found at i:64709784 original size:41 final size:42
Alignment explanation
Indices: 64709708--64709786 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
64709698 TATAATATAT
*
64709708 AATAAAGATAATACAATAAATATAAAATAATATAAAAAGAAC
1 AATAAAGATAATAAAATAAATATAAAATAATATAAAAAGAAC
*
64709750 AATAAATAT-ATAAAATAAATA-AATATATAA-ATAAAAA
1 AATAAAGATAATAAAATAAATATAA-A-ATAATATAAAAA
64709787 ATAATAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
40 2 0.06
41 19 0.58
42 12 0.36
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (42 bp):
AATAAAGATAATAAAATAAATATAAAATAATATAAAAAGAAC
Found at i:64709905 original size:27 final size:27
Alignment explanation
Indices: 64709874--64709984 Score: 82
Period size: 32 Copynumber: 3.7 Consensus size: 27
64709864 AAATTATAAT
64709874 AATAATAA-AAAAAAATTAATTTAAAATAA
1 AATAATAATAAAAAAATTAATTT--AA-AA
64709903 TAATAATAATAAATAAAATTATATTTAAAA
1 -AATAATAATAAA-AAAATTA-ATTTAAAA
* *
64709933 ATATAATATAATAAAATAAATTAGAAATTAATA
1 A-AT-A-ATAATAAAA-AAATT--AATTTAAAA
64709966 AATAATAA-AAAAAAATTAA
1 AATAATAATAAAAAAATTAA
64709985 AAAAAAAATT
Statistics
Matches: 70, Mismatches: 2, Indels: 22
0.74 0.02 0.23
Matches are distributed among these distances:
26 2 0.03
28 5 0.07
29 5 0.07
30 16 0.23
31 8 0.11
32 22 0.31
33 11 0.16
34 1 0.01
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (27 bp):
AATAATAATAAAAAAATTAATTTAAAA
Found at i:64709906 original size:33 final size:32
Alignment explanation
Indices: 64709863--64709955 Score: 118
Period size: 33 Copynumber: 2.9 Consensus size: 32
64709853 TAAATAAATA
*
64709863 AAAATTATAATAATAATAAAAAAAAATTAATTT
1 AAAATAATAATAATAAT-AAAAAAAATTAATTT
*
64709896 AAAATAATAATAATAATAAATAAAATTATATTT
1 AAAATAATAATAATAATAAAAAAAATTA-ATTT
*
64709929 AAAA-ATATAAT-ATAATAAAATAAATTA
1 AAAATA-ATAATAATAATAAAAAAAATTA
64709956 GAAATTAATA
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
32 25 0.46
33 29 0.54
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (32 bp):
AAAATAATAATAATAATAAAAAAAATTAATTT
Found at i:64709952 original size:21 final size:21
Alignment explanation
Indices: 64709694--64709952 Score: 63
Period size: 19 Copynumber: 11.9 Consensus size: 21
64709684 AATCATTAAA
* *
64709694 ATAATATAAT-ATATAATAAAG
1 ATAATATAATAAAATAA-AAAT
* *
64709715 ATAATACAAT-AAATATAAA-
1 ATAATATAATAAAATAAAAAT
* *
64709734 ATAATATAAAAAGAACAATAAAT
1 ATAATATAATAA-AATAA-AAAT
* *
64709757 AT-ATAAAAT-AAATAAATAT
1 ATAATATAATAAAATAAAAAT
*
64709776 ATAA-ATAA-AAAATAATAAT
1 ATAATATAATAAAATAAAAAT
* * * ** *
64709795 TTGATATTATTTAATAAATTAT
1 ATAATATAATAAAATAAA-AAT
64709817 AATAATTAATTATATAAAATAAAAGAAT
1 -ATAA-T-A-TA-ATAAAAT-AAA-AAT
*
64709845 AAGAATATTAA-ATAAATAAAAATT
1 AT-AATA-TAATA-AAATAAAAA-T
64709869 ATAATAATAATAAAA-AAAAAT
1 ATAAT-ATAATAAAATAAAAAT
* *
64709890 -TAATTTAA-AATAATAATAAT
1 ATAATATAATAA-AATAAAAAT
* **
64709910 AATAAATAAAATTATATTTAAAAAT
1 -AT-AATATAA-TA-AAATAAAAAT
64709935 ATAATATAATAAAATAAA
1 ATAATATAATAAAATAAA
64709953 TTAGAAATTA
Statistics
Matches: 170, Mismatches: 40, Indels: 56
0.64 0.15 0.21
Matches are distributed among these distances:
18 2 0.01
19 31 0.18
20 21 0.12
21 28 0.16
22 18 0.11
23 26 0.15
24 11 0.06
25 13 0.08
26 6 0.04
27 7 0.04
28 7 0.04
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (21 bp):
ATAATATAATAAAATAAAAAT
Found at i:64709971 original size:32 final size:32
Alignment explanation
Indices: 64709869--64710002 Score: 103
Period size: 33 Copynumber: 4.1 Consensus size: 32
64709859 AATAAAAATT
* *
64709869 ATAATAATAATAAAAAAAAATT-AATTTAAAATA
1 ATAAT-ATAATAAAATAAAATTAAAATTAAAA-A
* *
64709902 ATAATAATAAT-AAATAAAATTATATTTAAAAA
1 ATAAT-ATAATAAAATAAAATTAAAATTAAAAA
*
64709934 TATAATATAATAAAAT-AAATTAGAAATTAATAA
1 -ATAATATAATAAAATAAAATTA-AAATTAAAAA
* * **
64709967 ATAATAAAAAAAAATTAAAAAAAAAATTAAATAA
1 ATAATATAATAAAA-TAAAATTAAAATTAAA-AA
64710001 AT
1 AT
64710003 TTAATCATAT
Statistics
Matches: 84, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
32 33 0.39
33 43 0.51
34 8 0.10
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.30
Consensus pattern (32 bp):
ATAATATAATAAAATAAAATTAAAATTAAAAA
Found at i:64709989 original size:12 final size:12
Alignment explanation
Indices: 64709972--64709997 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64709962 AATAAATAAT
64709972 AAAAAAAAATTA
1 AAAAAAAAATTA
64709984 AAAAAAAAATTA
1 AAAAAAAAATTA
64709996 AA
1 AA
64709998 TAAATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAAAAAATTA
Found at i:64710025 original size:26 final size:29
Alignment explanation
Indices: 64709987--64710057 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 29
64709977 AAAATTAAAA
64709987 AAAAAATTAAATAAATTTA-ATCA-TAT-T
1 AAAAAATT-AATAAATTTATATCAGTATAT
64710014 AAAAAATTAATAAATTTATATCAGTATAGT
1 AAAAAATTAATAAATTTATATCAGTATA-T
64710044 AAAAAATATAATAA
1 AAAAAAT-TAATAA
64710058 TAAGATAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
26 10 0.26
27 12 0.31
28 3 0.08
30 8 0.21
31 6 0.15
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (29 bp):
AAAAAATTAATAAATTTATATCAGTATAT
Found at i:64710180 original size:28 final size:28
Alignment explanation
Indices: 64710127--64710235 Score: 91
Period size: 28 Copynumber: 3.8 Consensus size: 28
64710117 AATAAAAAAA
*
64710127 AAAATATATAAATAAATAATACATAATTTAT
1 AAAATATAT-AATAAA-AA-ATATAATTTAT
64710158 AAGAATATATAA-AAAGAAA-ATAATATT-T
1 AA-AATATATAATAAA-AAATATAAT-TTAT
*
64710186 AAAATAT-TAATAAAAAATAAAATTATAT
1 AAAATATATAATAAAAAATATAATT-TAT
* *
64710214 AAAATATATAATATAATATATA
1 AAAATATATAATAAAAAATATA
64710236 TTAAAAAAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
26 7 0.11
27 13 0.20
28 16 0.24
29 14 0.21
30 5 0.08
31 4 0.06
32 7 0.11
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (28 bp):
AAAATATATAATAAAAAATATAATTTAT
Found at i:64710186 original size:30 final size:28
Alignment explanation
Indices: 64710127--64710224 Score: 94
Period size: 32 Copynumber: 3.4 Consensus size: 28
64710117 AATAAAAAAA
*
64710127 AAAATATATAAATAAATAATACATAATTTAT
1 AAAATATATAAA-AAAAAATA-AT-ATTTAT
64710158 AAGAATATATAAAAAGAAAATAATA-TT-T
1 AA-AATATATAAAAA-AAAATAATATTTAT
* *
64710186 AAAATAT-TAATAAAAAATAAAATTATAT
1 AAAATATATAAAAAAAAATAATATT-TAT
64710214 AAAATATATAA
1 AAAATATATAA
64710225 TATAATATAT
Statistics
Matches: 58, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
25 8 0.14
26 6 0.10
27 6 0.10
28 11 0.19
29 5 0.09
30 1 0.02
31 6 0.10
32 15 0.26
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (28 bp):
AAAATATATAAAAAAAAATAATATTTAT
Found at i:64710241 original size:34 final size:35
Alignment explanation
Indices: 64710188--64710279 Score: 95
Period size: 34 Copynumber: 2.7 Consensus size: 35
64710178 TAATATTTAA
* *
64710188 AATAT-TAATAA-AAAATAAAATTATATAA-AATAT
1 AATATATAATAATATAATAAAATAAT-TAATAATAT
* *
64710221 -ATAATATAAT-ATATATTAAAAAAATTAATAATAT
1 AAT-ATATAATAATATAATAAAATAATTAATAATAT
64710255 AATATATAATAATATAATAAAATAA
1 AATATATAATAATATAATAAAATAA
64710280 AAAGTATTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
32 2 0.04
33 6 0.13
34 25 0.53
35 14 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (35 bp):
AATATATAATAATATAATAAAATAATTAATAATAT
Found at i:64710397 original size:36 final size:34
Alignment explanation
Indices: 64710312--64710405 Score: 93
Period size: 34 Copynumber: 2.7 Consensus size: 34
64710302 AAAATATTAA
* * * *
64710312 ATAATATAAATATTAATACATAAATTTAATAATT
1 ATAATATAAAAATTAAAATAAAAATTTAATAATT
64710346 ATAATATAAAAATTAAGAAGTAAAAATTTAAT-A-T
1 ATAATATAAAAATTAA-AA-TAAAAATTTAATAATT
*
64710380 ATATATATATAATATTAAAATAAAAA
1 ATA-ATATA-AAAATTAAAATAAAAA
64710406 AAAATAGGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
34 25 0.49
35 9 0.18
36 17 0.33
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (34 bp):
ATAATATAAAAATTAAAATAAAAATTTAATAATT
Found at i:64710558 original size:63 final size:62
Alignment explanation
Indices: 64710491--64710671 Score: 162
Period size: 63 Copynumber: 2.9 Consensus size: 62
64710481 TATTTTTAAT
* *
64710491 TATATAAAATAATAGTAATAAGTTAAT-TAATT-TTTAATAATAATAAACATAATATAAAAATAA
1 TATATAAAATAATAATAATAA-TAAATAT-ATTATTTAATAATAATAAA-ATAATATAAAAATAA
* * *
64710554 TATATAATATAATAATTATAATAAATATATTATTTAATACTAATAAAATAATATAAAACAT-A
1 TATATAAAATAATAATAATAATAAATATATTATTTAATAATAATAAAATAATATAAAA-ATAA
* * * *
64710616 TA-ATTAAAA-ATTAATAAT-ATAAAAATTTTAATTAAT-ATAA-AAATATACATATAAAA
1 TATA-TAAAATAATAATAATAATAAATATATTATTTAATAATAATAAA-ATA-ATATAAAA
64710672 CACTAAAAAT
Statistics
Matches: 100, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
58 3 0.03
59 6 0.06
60 23 0.23
61 8 0.08
62 25 0.25
63 35 0.35
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (62 bp):
TATATAAAATAATAATAATAATAAATATATTATTTAATAATAATAAAATAATATAAAAATAA
Found at i:64710605 original size:30 final size:29
Alignment explanation
Indices: 64710518--64710611 Score: 80
Period size: 30 Copynumber: 3.0 Consensus size: 29
64710508 ATAAGTTAAT
*
64710518 TAATTTTTAATAATAATAAACATAATATAAAAA
1 TAATATTTAAT-ATAATAAA-AT-A-ATAAAAA
* * *
64710551 TAATATATAATATAATAATTATAATAAATA
1 TAATATTTAATATAATAA-AATAATAAAAA
*
64710581 TATTATTTAATACTAATAAAATAATATAAAA
1 TAATATTTAATA-TAATAAAATAATA-AAAA
64710612 CATATAATTA
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
30 22 0.44
31 10 0.20
32 9 0.18
33 9 0.18
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (29 bp):
TAATATTTAATATAATAAAATAATAAAAA
Found at i:64710618 original size:14 final size:15
Alignment explanation
Indices: 64710600--64710671 Score: 64
Period size: 14 Copynumber: 4.8 Consensus size: 15
64710590 ATACTAATAA
64710600 AATAATATAAAACA-T
1 AATAATATAAAA-ATT
64710615 -ATAAT-TAAAAATT
1 AATAATATAAAAATT
64710628 AATAATATAAAAATTTT
1 AATAATATAAAAA--TT
64710645 AATTAATATAAAAA-T
1 AA-TAATATAAAAATT
64710660 -ATACATATAAAA
1 AATA-ATATAAAA
64710672 CACTAAAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.02
13 8 0.16
14 19 0.38
15 7 0.14
17 4 0.08
18 11 0.22
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAATATAAAAATT
Found at i:64710630 original size:102 final size:98
Alignment explanation
Indices: 64710451--64710638 Score: 222
Period size: 102 Copynumber: 1.9 Consensus size: 98
64710441 TAAAAAACAG
* *
64710451 ATAAAATATAATATATATAATTTATATATATATTTTTAATTATATAAAATAATAGTAATAAGTTA
1 ATAAAATATAATATATATAATTTATAAATATATTTTTAATTATATAAAATAATAGTAATAAATTA
***
64710516 ATTAATTTTTAATAATAATAAACATAATATAAAA
66 ATTAAAAATTAATAAT-ATAAACATAATATAAAA
*
64710550 ATAATATATAATATA-ATAATTATAATAAATATATTATTTAA-TACTAATAAAATAATA-TAA-A
1 ATAAAATATAATATATATAATT-T-ATAAATATATT-TTTAATTA-T-ATAAAATAATAGTAATA
64710611 ACATATAATTAAAAATTAATAATATAAA
61 A-AT-TAATTAAAAATTAATAATATAAA
64710639 AATTTTAATT
Statistics
Matches: 76, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
98 6 0.08
99 15 0.20
100 14 0.18
101 15 0.20
102 26 0.34
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (98 bp):
ATAAAATATAATATATATAATTTATAAATATATTTTTAATTATATAAAATAATAGTAATAAATTA
ATTAAAAATTAATAATATAAACATAATATAAAA
Found at i:64710651 original size:60 final size:63
Alignment explanation
Indices: 64710524--64710688 Score: 159
Period size: 60 Copynumber: 2.7 Consensus size: 63
64710514 TAATTAATTT
* * *
64710524 TTAATAATAATAAACATAATATAAAA-ATAATATATAATATAATAATTATAATAAATATATTAT
1 TTAAT-ATAATAAACATAATATAAAACATAATATATAATATAATAATAATAATAAAAATATTAA
*
64710587 TTAATACTAATAAA-ATAATATAAAACAT-ATA-ATTAA-A-AATTAATAAT-ATAAAAATTTTA
1 TTAATA-TAATAAACATAATATAAAACATAATATA-TAATATAA-TAATAATAATAAAAATATTA
64710646 A
63 A
* *
64710647 TTAATATAA-AAATATACATATAAAACACTAA-AAATAATATAA
1 TTAATATAATAAACATA-ATATAAAACA-TAATATATAATATAA
64710689 ATATATCAAA
Statistics
Matches: 87, Mismatches: 4, Indels: 22
0.77 0.04 0.19
Matches are distributed among these distances:
58 3 0.03
59 6 0.07
60 28 0.32
61 13 0.15
62 21 0.24
63 16 0.18
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (63 bp):
TTAATATAATAAACATAATATAAAACATAATATATAATATAATAATAATAATAAAAATATTAA
Found at i:64710928 original size:26 final size:26
Alignment explanation
Indices: 64710858--64711000 Score: 82
Period size: 26 Copynumber: 5.5 Consensus size: 26
64710848 AAAACTTTTA
*
64710858 AAAATTATAAAAAAAAAA-AAATATAT
1 AAAA-TATAAAAAAAAAATAAAAATAT
* ** *
64710884 TATTTATAAAAAAATAATAAAAATAT
1 AAAATATAAAAAAAAAATAAAAATAT
* * *
64710910 AAAATATAAAAAAAAAATATAGATTT
1 AAAATATAAAAAAAAAATAAAAATAT
* * *
64710936 ACAATA-ATAAAATAAAAT-AAATTAT
1 AAAATATA-AAAAAAAAATAAAAATAT
*
64710961 ATAATA-AAAATAATAATAATAAAAA-AT
1 AAAATATAAAA-AA-AA-AATAAAAATAT
64710988 -AAATAATAAAAAA
1 AAAAT-ATAAAAAA
64711001 TAATATATAA
Statistics
Matches: 87, Mismatches: 22, Indels: 15
0.70 0.18 0.12
Matches are distributed among these distances:
24 3 0.03
25 23 0.26
26 46 0.53
27 8 0.09
28 7 0.08
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.27
Consensus pattern (26 bp):
AAAATATAAAAAAAAAATAAAAATAT
Found at i:64710942 original size:24 final size:24
Alignment explanation
Indices: 64710859--64710979 Score: 69
Period size: 24 Copynumber: 5.1 Consensus size: 24
64710849 AAACTTTTAA
64710859 AAATTATA-AA-AAAAAA-AAAAT
1 AAATTATACAATAAAAAATAAAAT
* **
64710880 ATATTAT-TTATAAAAAAATAATAA-
1 AAATTATACAAT-AAAAAATAA-AAT
* *
64710904 AAA-TATAAAATATAAAAAAAAAAT
1 AAATTATACAATA-AAAAATAAAAT
64710928 ATAGATT-TACAATAATAAAATAAAAT
1 A-A-ATTATACAATAA-AAAATAAAAT
*
64710954 AAATTATATAAT-AAAAATAATAAT
1 AAATTATACAATAAAAAATAA-AAT
64710978 AA
1 AA
64710980 TAAAAAATAA
Statistics
Matches: 77, Mismatches: 9, Indels: 25
0.69 0.08 0.23
Matches are distributed among these distances:
21 7 0.09
23 19 0.25
24 23 0.30
25 10 0.13
26 17 0.22
27 1 0.01
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.28
Consensus pattern (24 bp):
AAATTATACAATAAAAAATAAAAT
Found at i:64711009 original size:79 final size:82
Alignment explanation
Indices: 64710896--64711052 Score: 193
Period size: 78 Copynumber: 2.0 Consensus size: 82
64710886 TTTATAAAAA
* *
64710896 AATAATAAAAATATAAAATATAAAAAAAAAATATAGATTTACA-ATAATAAAATAAAAT-AAATT
1 AATAATAAAAATATAAAATATAAAAAAAAAATATA-ATATA-ATATAACAAAATAAAATGAAATT
64710959 -A-T-ATAATAAAAATAAT
64 AATTAATAATAAAAATAAT
* *
64710975 AATAATAAAAA-AT-AAATAATAAAAAATAATATATAATATAATATAACAAAATATAATGAAATT
1 AATAATAAAAATATAAAAT-ATAAAAAA-AAAATATAATATAATATAACAAAATAAAATGAAATT
64711038 AATTAATAATAAAAA
64 AATTAATAATAAAAA
64711053 AGTTATAATA
Statistics
Matches: 67, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
77 5 0.07
78 27 0.40
79 23 0.34
80 1 0.01
81 1 0.01
82 10 0.15
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (82 bp):
AATAATAAAAATATAAAATATAAAAAAAAAATATAATATAATATAACAAAATAAAATGAAATTAA
TTAATAATAAAAATAAT
Found at i:64711010 original size:14 final size:15
Alignment explanation
Indices: 64710897--64711007 Score: 86
Period size: 14 Copynumber: 7.2 Consensus size: 15
64710887 TTATAAAAAA
64710897 ATAATAAAAATATAAAAT
1 ATAATAAAAA-AT--AAT
64710915 ATAA-AAAAAA-AAT
1 ATAATAAAAAATAAT
** *
64710928 ATAGATTTACAATAAT
1 ATA-ATAAAAAATAAT
* *
64710944 AAAATAAAATAAATTAT
1 ATAAT-AAA-AAATAAT
64710961 ATAAT-AAAAATAAT
1 ATAATAAAAAATAAT
64710975 AATAATAAAAAATAA-
1 -ATAATAAAAAATAAT
64710990 ATAATAAAAAATAAT
1 ATAATAAAAAATAAT
64711005 ATA
1 ATA
64711008 TAATATAATA
Statistics
Matches: 75, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
13 6 0.08
14 21 0.28
15 15 0.20
16 15 0.20
17 14 0.19
18 4 0.05
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.27
Consensus pattern (15 bp):
ATAATAAAAAATAAT
Found at i:64711020 original size:17 final size:16
Alignment explanation
Indices: 64710889--64711012 Score: 79
Period size: 15 Copynumber: 8.2 Consensus size: 16
64710879 TATATTATTT
64710889 ATAAAAA-AATA-ATA
1 ATAAAAATAATATATA
* *
64710903 A-AAATATAAAATATA
1 ATAAAAATAATATATA
* *
64710918 A-AAAAAAAATATAGA
1 ATAAAAATAATATATA
* * *
64710933 TTTACAATAATA-A-A
1 ATAAAAATAATATATA
64710947 AT-AAAATAAATTATATA
1 ATAAAAAT-AA-TATATA
64710964 ATAAAAATAATA-ATA
1 ATAAAAATAATATATA
*
64710979 AT-AAAA-AATAAATA
1 ATAAAAATAATATATA
64710993 ATAAAAAATAATATATA
1 AT-AAAAATAATATATA
64711010 ATA
1 ATA
64711013 TAATATAACA
Statistics
Matches: 85, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
13 12 0.14
14 17 0.20
15 22 0.26
16 15 0.18
17 14 0.16
18 5 0.06
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.27
Consensus pattern (16 bp):
ATAAAAATAATATATA
Found at i:64711049 original size:53 final size:50
Alignment explanation
Indices: 64710938--64711067 Score: 131
Period size: 51 Copynumber: 2.5 Consensus size: 50
64710928 ATAGATTTAC
*
64710938 AATAATAAAATAA-AATAAATTATATAATAAAAATAATAATAATAAAAAATA
1 AATAATAAAA-AATAAT-AATAATATAATAAAAATAATAATAATAAAAAATA
* *
64710989 AATAATAAAAAATAATATATAATATAATATAACAA-AAT-ATAATGAAATTAATT
1 AATAATAAAAAATAATA-ATAATATAATA-AA-AATAATAATAAT-AAA-AAATA
*
64711042 AATAATAAAAAAGTTATAATAATATA
1 AATAATAAAAAA-TAATAATAATATA
64711068 TATGATATAA
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
50 3 0.04
51 28 0.41
52 8 0.12
53 25 0.37
54 4 0.06
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.30
Consensus pattern (50 bp):
AATAATAAAAAATAATAATAATATAATAAAAATAATAATAATAAAAAATA
Found at i:64711065 original size:3 final size:3
Alignment explanation
Indices: 64710938--64711017 Score: 59
Period size: 3 Copynumber: 28.3 Consensus size: 3
64710928 ATAGATTTAC
* *
64710938 AAT AAT AA- AAT AA- AAT AA- ATT ATAT AAT AAA AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
64710981 AA- AA- AAT AAAT AAT AA- AA- AAT AAT ATAT AAT -AT AAT A
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A
64711018 TAACAAAATA
Statistics
Matches: 64, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
2 15 0.23
3 41 0.64
4 8 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:64711216 original size:19 final size:19
Alignment explanation
Indices: 64711180--64711390 Score: 68
Period size: 18 Copynumber: 11.5 Consensus size: 19
64711170 AAATATAAAT
*
64711180 ATAATATACAAATA-AATAA
1 ATAATATA-ATATATAATAA
64711199 ATAATATAATATATAATAA
1 ATAATATAATATATAATAA
*
64711218 TTAAGT-TAATA-A-AATCTAA
1 ATAA-TATAATATATAA--TAA
*
64711237 A-AATATTATAT-TAATAA
1 ATAATATAATATATAATAA
64711254 A-AA-ATAATAT-TAAATAA
1 ATAATATAATATAT-AATAA
* * *
64711271 A-AATAAAAAATTTAA-ATA
1 ATAATATAATATATAATA-A
64711289 A-AATATAATATCAT--TAA
1 ATAATATAATAT-ATAATAA
* *
64711306 ATAATAAAATAATATTATAA
1 ATAATATAAT-ATATAATAA
*
64711326 CCAAAATATAATAATATAA-AA
1 --ATAATATAAT-ATATAATAA
64711347 A-AATATAA-AT-TAATAA
1 ATAATATAATATATAATAA
64711363 TATTAATAATAAT-TA-AA-AA
1 -A-TAAT-ATAATATATAATAA
64711382 ATAATATAA
1 ATAATATAA
64711391 ATAAAATTTA
Statistics
Matches: 152, Mismatches: 14, Indels: 55
0.69 0.06 0.25
Matches are distributed among these distances:
15 3 0.02
16 15 0.10
17 25 0.16
18 46 0.30
19 36 0.24
20 11 0.07
21 2 0.01
22 14 0.09
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAATATAATATATAATAA
Done.