Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 209 of 325
Found at i:64939470 original size:28 final size:28
Alignment explanation
Indices: 64939430--64939496 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
64939420 TGTACAGTAT
* * *
64939430 TTAGTGTGTGAGATATCAAGTGTGGTAC
1 TTAGTGTGCGAGATATCAAGTATGGCAC
*
64939458 TTAGTGTGCGAGATATCGAGTATGGCAC
1 TTAGTGTGCGAGATATCAAGTATGGCAC
64939486 TTAGTGTGCGA
1 TTAGTGTGCGA
64939497 CGCATTGAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.24, C:0.10, G:0.33, T:0.33
Consensus pattern (28 bp):
TTAGTGTGCGAGATATCAAGTATGGCAC
Found at i:64941225 original size:40 final size:40
Alignment explanation
Indices: 64941188--64941372 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
64941178 GCTACTCGTT
*
64941188 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
64941228 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
64941268 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
64941307 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
64941348 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64941373 CATCATTCGA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.63
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:64941288 original size:79 final size:81
Alignment explanation
Indices: 64941190--64941372 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
64941180 TACTCGTTCA
* **
64941190 AATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
64941253 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
64941270 AATGCCTTCGGG-CTTAGCCC-GAAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
64941333 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
64941349 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
64941373 CATCATTCGA
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
78 5 0.06
79 56 0.64
80 24 0.28
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:64959966 original size:37 final size:37
Alignment explanation
Indices: 64959908--64959983 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
64959898 TTATGAAGTT
* *
64959908 TTACCCGGACATAATCTCCACACGAAGTTATCGGGTC
1 TTACCCGGACAAAATCTCCACACGAAGTCATCGGGTC
*
64959945 TTACCCGGACAAAAT-TCCCACACGTAGTCATCGGGTC
1 TTACCCGGACAAAATCT-CCACACGAAGTCATCGGGTC
64959982 TT
1 TT
64959984 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
36 1 0.03
37 34 0.97
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TTACCCGGACAAAATCTCCACACGAAGTCATCGGGTC
Found at i:64960180 original size:47 final size:47
Alignment explanation
Indices: 64960102--64960307 Score: 295
Period size: 47 Copynumber: 4.4 Consensus size: 47
64960092 CCCTTCAGGA
* * * * * * *
64960102 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64960149 CCTGTCACATAAATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64960196 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64960243 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64960290 CTTATCACACATATACAC
1 CTTATCACATATATACAC
64960308 ATCGGGAAGC
Statistics
Matches: 142, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 142 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64961837 original size:37 final size:37
Alignment explanation
Indices: 64961787--64961865 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
64961777 TTATTACGAA
* *
64961787 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
* *
64961824 GTCTTACCCGGACAAAATTCCCACTCGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
64961861 GTCTT
1 GTCTT
64961866 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:64962060 original size:47 final size:47
Alignment explanation
Indices: 64961982--64962468 Score: 798
Period size: 47 Copynumber: 10.4 Consensus size: 47
64961972 GCCCTTCGGA
* * * * * * *
64961982 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64962029 CCTGTCACATAAATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64962076 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64962123 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64962170 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64962217 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64962264 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64962309 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64962356 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64962403 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64962450 CTTATCACACATATACACT
1 CTTATCACATATATACACT
64962469 GTCTTGGCTG
Statistics
Matches: 415, Mismatches: 23, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
45 44 0.11
47 371 0.89
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64962391 original size:233 final size:234
Alignment explanation
Indices: 64961982--64962468 Score: 832
Period size: 233 Copynumber: 2.1 Consensus size: 234
64961972 GCCCTTCGGA
** * * * * *
64961982 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATAAATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACAT-AATACAC
64962047 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
64962112 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
130 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
*
64962177 CACATATACACTTTCACATTCATCACATCGGCTATTAGGC
195 CACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64962217 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-ATACACT
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATAATACACT
*
64962281 TTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
64962346 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
131 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
*
64962411 ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
64962450 CTTATCACACATATACACT
1 CTTATCACACATATACACT
64962469 GTCTTGGCTG
Statistics
Matches: 238, Mismatches: 14, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
233 191 0.80
235 47 0.20
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (234 bp):
CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATAATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64970900 original size:38 final size:38
Alignment explanation
Indices: 64970809--64970918 Score: 157
Period size: 38 Copynumber: 2.9 Consensus size: 38
64970799 CGAATACACG
* * * * *
64970809 TCACCAGCATGATTGCTCTTCGGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGACTTAGC-CCGATACA
*
64970848 TCACTAGCACGAATGCTCTTCGGACTTAGCCCGATACA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGATACA
64970886 TCACTAGCATGAATGCTCTTCGGACTTAGCCCG
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCG
64970919 GATTTAGTAA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 38 0.59
39 26 0.41
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (38 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGATACA
Found at i:64970904 original size:77 final size:78
Alignment explanation
Indices: 64970809--64970954 Score: 197
Period size: 77 Copynumber: 1.9 Consensus size: 78
64970799 CGAATACACG
* * * *
64970809 TCACCAGCATGATTGCTCTTCGGATTTAGCACGGATATA-TCACTAGCACGAATGCTCTTCGGA-
1 TCACCAGCATGAATGCTCTTCGGACTTAGCACGGATATAGTAACTAGCACCAATGC-CTTCGGAT
64970872 CTTAGCCCGATACA
65 CTTAGCCCGATACA
* * * *
64970886 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGATC
1 TCACCAGCATGAATGCTCTTCGGACTTAGCACGGATATAGTAACTAGCACCAATGCCTTCGGATC
64970951 TTAG
66 TTAG
64970955 TCCGGATATG
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
77 41 0.69
78 18 0.31
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (78 bp):
TCACCAGCATGAATGCTCTTCGGACTTAGCACGGATATAGTAACTAGCACCAATGCCTTCGGATC
TTAGCCCGATACA
Found at i:64970954 original size:40 final size:39
Alignment explanation
Indices: 64970826--64971000 Score: 137
Period size: 40 Copynumber: 4.5 Consensus size: 39
64970816 CATGATTGCT
* * *
64970826 CTTCGGATTTAGCACGGATATA-TCAC-TAGCACGAATGC
1 CTTCGGACTTAGCCCGGATATAGTAACTTAGCAC-AATGC
* * *
64970864 TCTTCGGACTTAGCCC-GATACA-TCAC-TAGCATGAATGC
1 -CTTCGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* *
64970902 TCTTCGGACTTAGCCCGGATTTAGTAAC-TCGCACCAATGC
1 -CTTCGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* * * *
64970942 CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGA-CTTAGCCCGGATATAGTAACTTAGCACAATGC
64970982 CTTCGGGACTTAGCCCGGA
1 CTTC-GGACTTAGCCCGGA
64971001 CATCATTCGA
Statistics
Matches: 113, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
38 35 0.31
39 24 0.21
40 47 0.42
41 7 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CTTCGGACTTAGCCCGGATATAGTAACTTAGCACAATGC
Found at i:64971344 original size:29 final size:29
Alignment explanation
Indices: 64971305--64971383 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
64971295 CTTAATAATC
*
64971305 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
64971335 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
64971364 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
64971384 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:64971426 original size:43 final size:43
Alignment explanation
Indices: 64971365--64971467 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
64971355 TGCATTTCAA
64971365 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
64971408 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
64971451 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
64971468 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:64973383 original size:37 final size:37
Alignment explanation
Indices: 64973333--64973411 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
64973323 TTATTACGAA
* *
64973333 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
64973370 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
64973407 GTCTT
1 GTCTT
64973412 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:64973608 original size:47 final size:47
Alignment explanation
Indices: 64973530--64974059 Score: 925
Period size: 47 Copynumber: 11.3 Consensus size: 47
64973520 CCCTTCGGGA
* * * * * * *
64973530 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64973577 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64973624 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64973671 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64973718 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64973765 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64973812 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64973859 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64973906 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64973953 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64974000 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64974047 CTTATCACATATA
1 CTTATCACATATA
64974060 CACTGTCTTG
Statistics
Matches: 464, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 464 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64977362 original size:27 final size:27
Alignment explanation
Indices: 64977331--64977383 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
64977321 CCTCGCTGCA
*
64977331 ATCTGGTGGCCTAGCCACAATATCTGT
1 ATCTGGTGACCTAGCCACAATATCTGT
* * *
64977358 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGACCTAGCCACAATATCTG
64977384 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
ATCTGGTGACCTAGCCACAATATCTGT
Found at i:64989816 original size:30 final size:30
Alignment explanation
Indices: 64989782--64989839 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
64989772 TTTTCGTGCA
* *
64989782 TAGGGATAAAATGGTCATTTTGCCAAAGTC
1 TAGGGACAAAATGGTCATTTTACCAAAGTC
*
64989812 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGACAAAATGGTCATTTTACCAAAG
64989840 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAATGGTCATTTTACCAAAGTC
Found at i:64990299 original size:44 final size:44
Alignment explanation
Indices: 64990176--64990299 Score: 126
Period size: 46 Copynumber: 2.8 Consensus size: 44
64990166 GGATTACTTG
* *
64990176 TGTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACAATA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATA
* * * ** *
64990220 TAATAACTAGTGTAAGACGTGTCTGGGACGCGCATCGGCTA-AGAGT-
1 T-GT-GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-A-TA
64990266 TGTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATC
64990300 CGCACGTATA
Statistics
Matches: 63, Mismatches: 13, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
44 28 0.44
45 3 0.05
46 31 0.49
47 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (44 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATA
Found at i:64991149 original size:55 final size:55
Alignment explanation
Indices: 64991077--64991194 Score: 173
Period size: 55 Copynumber: 2.1 Consensus size: 55
64991067 GCACTTAAAA
* * ** * *
64991077 TTTAAAGTCAGTGTTGTACATGGGCAGGCCACACGGGCGTGTGTCATGGTCGTGT
1 TTTAAAGTCAATATTGTACACAGGCAGGCCACACGGGCGTGTGTCATAGCCGTGT
*
64991132 TTTAAAGTCAATATTGTACACAGGTAGGCCACACGGGCGTGTGTCATAGCCGTGT
1 TTTAAAGTCAATATTGTACACAGGCAGGCCACACGGGCGTGTGTCATAGCCGTGT
64991187 TTTAAAGT
1 TTTAAAGT
64991195 TAGTGTTGCA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (55 bp):
TTTAAAGTCAATATTGTACACAGGCAGGCCACACGGGCGTGTGTCATAGCCGTGT
Found at i:64991243 original size:20 final size:20
Alignment explanation
Indices: 64991218--64991262 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
64991208 GGGTTAAGGG
64991218 CACGGGCGTGTCCCAAGCCA
1 CACGGGCGTGTCCCAAGCCA
64991238 CACGGGCGTGTCCCAAGCCA
1 CACGGGCGTGTCCCAAGCCA
64991258 CACGG
1 CACGG
64991263 TCTATAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.20, C:0.40, G:0.31, T:0.09
Consensus pattern (20 bp):
CACGGGCGTGTCCCAAGCCA
Found at i:64995100 original size:27 final size:27
Alignment explanation
Indices: 64995068--64995356 Score: 283
Period size: 27 Copynumber: 10.7 Consensus size: 27
64995058 TACATCACAT
* *
64995068 AGGGCAAAACAGTCATCTTACCATATG
1 AGGGCAAAACAGTCATTTTACCATATA
* * * * * *
64995095 GGGGCAAAATAATTATCTTACTATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* *
64995122 AGAGCAAAACAGTCATTTCACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* *
64995149 AGGGCAAAATAGTCATTTTACTATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* * *
64995176 AGGGCAAAATATTC-TTCTTACCACATA
1 AGGGCAAAACAGTCATT-TTACCATATA
* * * * *
64995203 AGAGCAAAATAGTCATTTCACCACAGA
1 AGGGCAAAACAGTCATTTTACCATATA
*
64995230 AGGGCAAAACAGTCATTTTACTATATTA
1 AGGGCAAAACAGTCATTTTACCATA-TA
* * * * *
64995258 GGGGTAAAATAATTATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
*
64995285 AGGGCAAAACAATCATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
*
64995312 AGGGCAAAACTGTCATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* *
64995339 AGGGCAAATCAATCATTT
1 AGGGCAAAACAGTCATTT
64995357 AGTCAATTCA
Statistics
Matches: 213, Mismatches: 46, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
26 2 0.01
27 189 0.89
28 22 0.10
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.28
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCATATA
Found at i:64995204 original size:81 final size:81
Alignment explanation
Indices: 64995068--64995346 Score: 355
Period size: 81 Copynumber: 3.4 Consensus size: 81
64995058 TACATCACAT
* ** * *
64995068 AGGGCAAAACAGTCATCTTACCATATGGGGGCAAAATAATTATCTTACTATATAAGAGCAAAACA
1 AGGGCAAAACAGTCATTTTACCATATAAGGGCAAAATAATTTTCTTACCATATAAGAGCAAAACA
64995133 GTCATTTCACCATATA
66 GTCATTTCACCATATA
* * * *
64995149 AGGGCAAAATAGTCATTTTACTATATAAGGGCAAAAT-ATTCTTCTTACCACATAAGAGCAAAAT
1 AGGGCAAAACAGTCATTTTACCATATAAGGGCAAAATAATT-TTCTTACCATATAAGAGCAAAAC
* *
64995213 AGTCATTTCACCACAGA
65 AGTCATTTCACCATATA
* * * *
64995230 AGGGCAAAACAGTCATTTTACTATATTAGGGGTAAAATAATTATT-TTACCATATAAGGGCAAAA
1 AGGGCAAAACAGTCATTTTACCATA-TAAGGGCAAAATAATT-TTCTTACCATATAAGAGCAAAA
* *
64995294 CAATCATTTTACCATATA
64 CAGTCATTTCACCATATA
*
64995312 AGGGCAAAACTGTCATTTTACCATATAAGGGCAAA
1 AGGGCAAAACAGTCATTTTACCATATAAGGGCAAA
64995347 TCAATCATTT
Statistics
Matches: 169, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
80 3 0.02
81 98 0.58
82 63 0.37
83 5 0.03
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (81 bp):
AGGGCAAAACAGTCATTTTACCATATAAGGGCAAAATAATTTTCTTACCATATAAGAGCAAAACA
GTCATTTCACCATATA
Found at i:64995306 original size:109 final size:108
Alignment explanation
Indices: 64995125--64995356 Score: 279
Period size: 109 Copynumber: 2.1 Consensus size: 108
64995115 CTATATAAGA
* * * *
64995125 GCAAAACAGTCATTTCACCATATAAGGGCAAAATAGTCATTTTACTATATAAGGGCAAAATATTC
1 GCAAAACAGTCATTTCACCATATAAGGGCAAAATAATCATTTTACCATATAAGGGCAAAACAATC
64995190 TTCTTACCACATAAGAGCAAAA-TAGTCATTTCACCACAGAAGG
66 TTCTTACCACATAAGAGCAAAACT-GTCATTTCACCACAGAAGG
* * * * *
64995233 GCAAAACAGTCATTTTACTATATTAGGGGTAAAATAATTATTTTACCATATAAGGGCAAAACAAT
1 GCAAAACAGTCATTTCACCATA-TAAGGGCAAAATAATCATTTTACCATATAAGGGCAAAACAAT
* * * * *
64995298 CATT-TTACCATATAAGGGCAAAACTGTCATTTTACCATATAAGG
65 C-TTCTTACCACATAAGAGCAAAACTGTCATTTCACCACAGAAGG
* *
64995342 GCAAATCAATCATTT
1 GCAAAACAGTCATTT
64995357 AGTCAATTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
108 20 0.19
109 82 0.78
110 3 0.03
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (108 bp):
GCAAAACAGTCATTTCACCATATAAGGGCAAAATAATCATTTTACCATATAAGGGCAAAACAATC
TTCTTACCACATAAGAGCAAAACTGTCATTTCACCACAGAAGG
Found at i:64999863 original size:27 final size:27
Alignment explanation
Indices: 64999833--64999932 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 27
64999823 GGAAAAATAG
*
64999833 TCATTTTACCTCACAAGGGCAAAACCA
1 TCATTTTACCTCATAAGGGCAAAACCA
* **
64999860 TCATTTTACCAT-ATAAGGGCAAAGCTG
1 TCATTTTACC-TCATAAGGGCAAAACCA
* *
64999887 TCATTTTAACACATAAGGGCAAAA-CA
1 TCATTTTACCTCATAAGGGCAAAACCA
* *
64999913 GTCAGTTTACCTTAT-AGGGC
1 -TCATTTTACCTCATAAGGGC
64999933 TATTACAGTC
Statistics
Matches: 57, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
26 5 0.09
27 51 0.89
28 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (27 bp):
TCATTTTACCTCATAAGGGCAAAACCA
Found at i:64999940 original size:27 final size:27
Alignment explanation
Indices: 64999910--65000003 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
64999900 TAAGGGCAAA
* *
64999910 ACAGTCAGTTTACCTTATAGGGCTATT
1 ACAGTCATTTTACCCTATAGGGCTATT
*
64999937 ACAGTCATTTTACCCTATAGGGGTATT
1 ACAGTCATTTTACCCTATAGGGCTATT
* *
64999964 TCAGTCATTTTATCCTATGAGGG-TACTT
1 ACAGTCATTTTACCCTAT-AGGGCTA-TT
*
64999992 -CAATCATTTTAC
1 ACAGTCATTTTAC
65000004 AAATCGGGGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
27 52 0.90
28 6 0.10
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (27 bp):
ACAGTCATTTTACCCTATAGGGCTATT
Found at i:65000434 original size:27 final size:27
Alignment explanation
Indices: 65000337--65000441 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
65000327 TCATCCTATG
* *
65000337 TAAGGGAAAAATAGTCATTTTACCTCA
1 TAAGGGCAAAATAGTCATTTTACCACA
* *
65000364 TAAGGGCAAAACCA-TCATTTTACCATA
1 TAAGGGCAAAA-TAGTCATTTTACCACA
* *
65000391 TAAGGGCAAAGCT-GTCATTTTAACACA
1 TAAGGGCAAA-ATAGTCATTTTACCACA
*
65000418 TAAGGGCAAAATAGTCAGTTTACC
1 TAAGGGCAAAATAGTCATTTTACC
65000442 TTATAGGGCT
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.02
27 61 0.97
28 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (27 bp):
TAAGGGCAAAATAGTCATTTTACCACA
Found at i:65000460 original size:27 final size:25
Alignment explanation
Indices: 65000430--65000521 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 25
65000420 AGGGCAAAAT
*
65000430 AGTCAGTTTACCTTATAGGGCTATTAC
1 AGTCATTTTACCTTATAGGG-TATT-C
*
65000457 AGTCATTTTACCCTATAGGGGTATTTC
1 AGTCATTTTACCTTATA-GGGTA-TTC
*
65000484 AGTCATTTTATCTTATGAGGGTACTTC
1 AGTCATTTTACCTTAT-AGGGTA-TTC
65000511 AGTCATTTTAC
1 AGTCATTTTAC
65000522 AAATCGGGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
27 50 0.89
28 6 0.11
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (25 bp):
AGTCATTTTACCTTATAGGGTATTC
Found at i:65000546 original size:518 final size:521
Alignment explanation
Indices: 64999563--65000608 Score: 1963
Period size: 518 Copynumber: 2.0 Consensus size: 521
64999553 ACACTCCATA
64999563 TGGGGATATAATCAACCCACCCATCCCTACACTCTAGAATTAGGACCGGTTGCAGCACTAAACAG
1 TGGGGATATAATCAACCCACCCATCCCTACACTCTAGAATTAGGACCGGTTGCAGCACTAAACAG
*
64999628 TATTTGTAGCAGTGCTGCCACTATAATAGGCTCAGAGCCATCAGTGATTTGCAGCAGAGCTGCCA
66 TATTTGCAGCAGTGCTGCCACTATAATAGGCTCAGAGCCATCAGTGATTTGCAGCAGAGCTGCCA
64999693 GTACAGCACACTTCCTCCAATCATATATAAACCCATCCCCATCCCCATGCAATGCATCATGCAAC
131 GTACAGCACACTTCCTCCAATCATATATAAA--CA-CCCCATCCCCATGCAATGCATCATGCAAC
64999758 ATGTCATGTCATATCATAATATTAAACATACATAACATAGGGGCAAAATAGTCATCCTACGTAAG
193 ATGTCATGTCATATCATAATATTAAACATACATAACATAGGGGCAAAATAGTCATCCTACGTAAG
64999823 GGAAAAATAGTCATTTTACCTCACAAGGGCAAAACCATCATTTTACCATATAAGGGCAAAGCTGT
258 GGAAAAATAGTCATTTTACCTCACAAGGGCAAAACCATCATTTTACCATATAAGGGCAAAGCTGT
64999888 CATTTTAACACATAAGGGCAAAACAGTCAGTTTACCTTATAGGGCTATTACAGTCATTTTACCCT
323 CATTTTAACACATAAGGGCAAAACAGTCAGTTTACCTTATAGGGCTATTACAGTCATTTTACCCT
64999953 ATAGGGGTATTTCAGTCATTTTATCCTATGAGGGTACTTCAATCATTTTACAAATCGGGGTCTTA
388 ATAGGGGTATTTCAGTCATTTTATCCTATGAGGGTACTTCAATCATTTTACAAATCGGGGTCTTA
65000018 ATGACCAAACAGATGGTCCATCGTCGCCTTGAGCGACTTAAGTAACCTACACAGACAAAACGGTG
453 ATGACCAAACAGATGGTCCATCGTCGCCTTGAGCGACTTAAGTAACCTACACAGACAAAACGGTG
65000083 CAAG
518 CAAG
65000087 TGGGGATATAATCAACCCACCCATCCCTACACTCTAGAATTAGGACCGGTTGCAGCACTAAACAG
1 TGGGGATATAATCAACCCACCCATCCCTACACTCTAGAATTAGGACCGGTTGCAGCACTAAACAG
* *
65000152 TATTTGCAGCAGTGCTGCTAGTATAATAGGCTCAGAGCCATCAGTGATTTGCAGCAGAGCTGCCA
66 TATTTGCAGCAGTGCTGCCACTATAATAGGCTCAGAGCCATCAGTGATTTGCAGCAGAGCTGCCA
65000217 GTACAGCACACTTCCTCCAATCATATAT-AA-A-CCCATCCCCATGCAATGCATCATGCAACATG
131 GTACAGCACACTTCCTCCAATCATATATAAACACCCCATCCCCATGCAATGCATCATGCAACATG
*
65000279 TCATGTCATATCATAATATTAAACATACATAACATAGGGGCAAAATAGTCATCCTATGTAAGGGA
196 TCATGTCATATCATAATATTAAACATACATAACATAGGGGCAAAATAGTCATCCTACGTAAGGGA
*
65000344 AAAATAGTCATTTTACCTCATAAGGGCAAAACCATCATTTTACCATATAAGGGCAAAGCTGTCAT
261 AAAATAGTCATTTTACCTCACAAGGGCAAAACCATCATTTTACCATATAAGGGCAAAGCTGTCAT
*
65000409 TTTAACACATAAGGGCAAAATAGTCAGTTTACCTTATAGGGCTATTACAGTCATTTTACCCTATA
326 TTTAACACATAAGGGCAAAACAGTCAGTTTACCTTATAGGGCTATTACAGTCATTTTACCCTATA
* *
65000474 GGGGTATTTCAGTCATTTTATCTTATGAGGGTACTTCAGTCATTTTACAAATCGGGGTCTTAATG
391 GGGGTATTTCAGTCATTTTATCCTATGAGGGTACTTCAATCATTTTACAAATCGGGGTCTTAATG
*
65000539 ACCAAACAGATGGTCCATCGTCGCCTTGAGCGACTTAAGTAACCTACACAGACATAACGGTGCAA
456 ACCAAACAGATGGTCCATCGTCGCCTTGAGCGACTTAAGTAACCTACACAGACAAAACGGTGCAA
65000604 G
521 G
65000605 TGGG
1 TGGG
65000609 CCTAAGGCCC
Statistics
Matches: 513, Mismatches: 9, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
518 355 0.69
520 1 0.00
523 2 0.00
524 155 0.30
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (521 bp):
TGGGGATATAATCAACCCACCCATCCCTACACTCTAGAATTAGGACCGGTTGCAGCACTAAACAG
TATTTGCAGCAGTGCTGCCACTATAATAGGCTCAGAGCCATCAGTGATTTGCAGCAGAGCTGCCA
GTACAGCACACTTCCTCCAATCATATATAAACACCCCATCCCCATGCAATGCATCATGCAACATG
TCATGTCATATCATAATATTAAACATACATAACATAGGGGCAAAATAGTCATCCTACGTAAGGGA
AAAATAGTCATTTTACCTCACAAGGGCAAAACCATCATTTTACCATATAAGGGCAAAGCTGTCAT
TTTAACACATAAGGGCAAAACAGTCAGTTTACCTTATAGGGCTATTACAGTCATTTTACCCTATA
GGGGTATTTCAGTCATTTTATCCTATGAGGGTACTTCAATCATTTTACAAATCGGGGTCTTAATG
ACCAAACAGATGGTCCATCGTCGCCTTGAGCGACTTAAGTAACCTACACAGACAAAACGGTGCAA
G
Found at i:65001243 original size:40 final size:40
Alignment explanation
Indices: 65001199--65001278 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
65001189 AGTGTTAGAA
65001199 AAACCCTTAACAACCACCTAACCAAAAAATCGACTACCAC
1 AAACCCTTAACAACCACCTAACCAAAAAATCGACTACCAC
*
65001239 AAACCCTTAACAACCACCTAACCGAAAAATCGACTACCAC
1 AAACCCTTAACAACCACCTAACCAAAAAATCGACTACCAC
65001279 TTGCCTTAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.46, C:0.38, G:0.04, T:0.12
Consensus pattern (40 bp):
AAACCCTTAACAACCACCTAACCAAAAAATCGACTACCAC
Found at i:65005075 original size:46 final size:46
Alignment explanation
Indices: 65005008--65005182 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
65004998 TGTAACCCGC
65005008 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
65005054 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * *
65005104 --TTCA-CGAACTCGGACTCAACTCAACGA-CTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGC-TCGGGCGTTCGCAT
*
65005147 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
65005183 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 15, Indels: 22
0.74 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 60 0.58
47 25 0.24
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:65005123 original size:93 final size:93
Alignment explanation
Indices: 65005016--65005186 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
65005006 GCCCATAAGT
* *
65005016 GAACTCGGACTCAACTCAACGAGC-TCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGA-CTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65005080 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
*
65005109 GAACTCGGACTCAACTCAACGACTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGACTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65005174 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65005187 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGACTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:65005640 original size:30 final size:30
Alignment explanation
Indices: 65005606--65005664 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
65005596 ATTTAATATG
65005606 AACTTTGGAAAAATTACACTTTTGCCCCTT
1 AACTTTGGAAAAATTACACTTTTGCCCCTT
*** *
65005636 AACTTTTTCATAATTACACTTTTGCCCCT
1 AACTTTGGAAAAATTACACTTTTGCCCCT
65005665 AGGCTCGAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.41
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTT
Found at i:65007229 original size:38 final size:38
Alignment explanation
Indices: 65007178--65007263 Score: 136
Period size: 38 Copynumber: 2.3 Consensus size: 38
65007168 ATATTTGATG
* *
65007178 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
*
65007216 TATATCCGGGTTAAATCCCGTAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
*
65007254 TATATTCGGG
1 TATATCCGGG
65007264 CCTTTGAGCC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
Found at i:65007311 original size:45 final size:45
Alignment explanation
Indices: 65007256--65007473 Score: 237
Period size: 45 Copynumber: 4.9 Consensus size: 45
65007246 GCTGGTATTA
* *
65007256 TATTCGGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * **
65007301 TATTTGGGCCTTTGAGCCTAGCAGGCTATTATGCTAGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * *
65007346 TATTCGAGCCTTTGAGCCCAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * * *
65007391 TATTCGGG-CTTTCGAGCCTCGCAGGCTATAATGCAGGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA-CAC
* * * *
65007436 TAATCGGGTC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
65007474 TTTGAGAAAA
Statistics
Matches: 148, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
43 11 0.07
44 16 0.11
45 119 0.80
46 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:65012421 original size:22 final size:22
Alignment explanation
Indices: 65012395--65012472 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
65012385 CTACAAATAT
65012395 AAAATAATTAGGTAGGAAACAA
1 AAAATAATTAGGTAGGAAACAA
* ** *
65012417 AAAATAAAACTTAAGTAAAAAAAATA
1 AAAAT--AA-TTAGGTAGGAAACA-A
*
65012443 GAAAATAATTAGGTAGGAAACAG
1 -AAAATAATTAGGTAGGAAACAA
65012466 AAAATAA
1 AAAATAA
65012473 AACTTAAGTA
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
22 12 0.29
24 12 0.29
25 12 0.29
26 1 0.02
27 5 0.12
ACGTcount: A:0.64, C:0.04, G:0.14, T:0.18
Consensus pattern (22 bp):
AAAATAATTAGGTAGGAAACAA
Found at i:65012442 original size:49 final size:49
Alignment explanation
Indices: 65012389--65012487 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
65012379 CTTAAACTAC
*
65012389 AAATATAAAATAATTAGGTAGGAAACAAAAAATAAAACTTAAGTAAAAA
1 AAATAGAAAATAATTAGGTAGGAAACAAAAAATAAAACTTAAGTAAAAA
*
65012438 AAATAGAAAATAATTAGGTAGGAAACAGAAAATAAAACTTAAGTAAAAA
1 AAATAGAAAATAATTAGGTAGGAAACAAAAAATAAAACTTAAGTAAAAA
65012487 A
1 A
65012488 CTGTCCATAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.19
Consensus pattern (49 bp):
AAATAGAAAATAATTAGGTAGGAAACAAAAAATAAAACTTAAGTAAAAA
Found at i:65012730 original size:21 final size:21
Alignment explanation
Indices: 65012674--65012731 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
65012664 TTCAAGACTG
*
65012674 TGTCTCAACATCCTCTAGCTA
1 TGTCTCAACATCCTTTAGCTA
*
65012695 TGTCTTAACATCCTTTAGCTA
1 TGTCTCAACATCCTTTAGCTA
*
65012716 TGTCGCAACATCCTTT
1 TGTCTCAACATCCTTT
65012732 GGTTGTGTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.29, G:0.10, T:0.38
Consensus pattern (21 bp):
TGTCTCAACATCCTTTAGCTA
Found at i:65023138 original size:26 final size:26
Alignment explanation
Indices: 65023087--65023165 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
65023077 GGTAATGAAT
*
65023087 TAACTTGTATAACTTGAATAGATATA
1 TAACTTGTATAACTTGAATGGATATA
*
65023113 TAACTTGTATAACTTGAATGGTTATA
1 TAACTTGTATAACTTGAATGGATATA
* * * * *
65023139 TGATTTTTATAGCTTGAATGGCTATA
1 TAACTTGTATAACTTGAATGGATATA
65023165 T
1 T
65023166 GATTTGTACA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.43
Consensus pattern (26 bp):
TAACTTGTATAACTTGAATGGATATA
Found at i:65033208 original size:93 final size:93
Alignment explanation
Indices: 65033086--65033257 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
65033076 CGCCCATAAG
* **
65033086 CGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
65033151 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * * *
65033179 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCTCATCTATAAGTGAACTCGGACTCAACTGA
1 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
65033244 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
65033258 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:65033247 original size:46 final size:45
Alignment explanation
Indices: 65033080--65033253 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
65033070 GTAACCCGCC
* * ** *
65033080 CATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
* *
65033125 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCACAT
* *
65033175 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCTCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
* *
65033218 CTATAAGTGAACTCGGACTCAACTGAACGAGTTCGG
1 C-ATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
65033254 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 3 0.03
46 58 0.55
47 27 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
Found at i:65038518 original size:54 final size:54
Alignment explanation
Indices: 65038460--65038687 Score: 196
Period size: 54 Copynumber: 4.2 Consensus size: 54
65038450 ACCTAAGGGT
* * *
65038460 AAAATAGTTATTTTACCTCATAATGGAAAAATCGTCATTTTATCACATAAGGCC
1 AAAATAGTCATTTTACCTCATAAGGGCAAAATCGTCATTTTATCACATAAGGCC
* * **
65038514 AAAATCGTTATTTTA--TCAATTAAGGGCAAAATCGTCATTTTATCACATAA-GAA
1 AAAATAGTCATTTTACCTC-A-TAAGGGCAAAATCGTCATTTTATCACATAAGGCC
* * * ** * * *
65038567 AAAATAGTCATTTTGCCACATAAGGGCAAGATTATCATTTTA-CGTCATGAGGGC
1 AAAATAGTCATTTTACCTCATAAGGGCAAAATCGTCATTTTATC-ACATAAGGCC
* * * * *
65038621 AAAACAGTCATTTTACCTCATGAGGCCAAAATAGTCATTTTATCTCATAAGGGCC
1 AAAATAGTCATTTTACCTCATAAGGGCAAAATCGTCATTTTATCACATAA-GGCC
*
65038676 -AAATTGTCATTT
1 AAAATAGTCATTT
65038688 CATCGATTAA
Statistics
Matches: 138, Mismatches: 28, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
52 3 0.02
53 37 0.27
54 93 0.67
55 5 0.04
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (54 bp):
AAAATAGTCATTTTACCTCATAAGGGCAAAATCGTCATTTTATCACATAAGGCC
Found at i:65038716 original size:55 final size:54
Alignment explanation
Indices: 65038648--65038773 Score: 135
Period size: 55 Copynumber: 2.3 Consensus size: 54
65038638 TCATGAGGCC
* * * *** *
65038648 AAAATAGTCATTTTATCTCATAAGGGCCAAATTGTCATTTCATCGATTAAAGGAA
1 AAAATTGTCATTTTATCACATAAGGGCAAAACCATCATTTCATCAATT-AAGGAA
** * **
65038703 AAAATTGTCATTTTGCCACATAAGGGCAAAACCATCATTTTATCAATTAAGGGT
1 AAAATTGTCATTTTATCACATAAGGGCAAAACCATCATTTCATCAATTAAGGAA
65038757 AAAATTGTCATTTTATC
1 AAAATTGTCATTTTATC
65038774 GATTAAGGGT
Statistics
Matches: 57, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
54 19 0.33
55 38 0.67
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.34
Consensus pattern (54 bp):
AAAATTGTCATTTTATCACATAAGGGCAAAACCATCATTTCATCAATTAAGGAA
Found at i:65038772 original size:27 final size:26
Alignment explanation
Indices: 65038453--65038782 Score: 168
Period size: 27 Copynumber: 12.2 Consensus size: 26
65038443 TCTTACCACC
* *
65038453 TAAGGGTAAAATAGTTATTTTACCTC-A
1 TAAGGGCAAAATAGTCATTTTA--TCAA
* * *
65038480 TAATGGAAAAATCGTCATTTTATCACA
1 TAAGGGCAAAATAGTCATTTTATCA-A
* * *
65038507 TAAGGCCAAAATCGTTATTTTATCAA
1 TAAGGGCAAAATAGTCATTTTATCAA
*
65038533 TTAAGGGCAAAATCGTCATTTTATCACA
1 -TAAGGGCAAAATAGTCATTTTATCA-A
** **
65038561 TAA-GAAAAAATAGTCATTTTGCCACA
1 TAAGGGCAAAATAGTCATTTTATCA-A
*
65038587 TAAGGGCAAGATTA-TCATTTTACGTC-A
1 TAAGGGCAA-AATAGTCATTTTA--TCAA
* *
65038614 TGAGGGCAAAACAGTCATTTTACCTC-A
1 TAAGGGCAAAATAGTCATTTTA--TCAA
* * *
65038641 TGAGGCCAAAATAGTCATTTTATCTCA
1 TAAGGGCAAAATAGTCATTTTATC-AA
* * * *
65038668 TAAGGGCCAAATTGTCATTTCATCGAT
1 TAAGGGCAAAATAGTCATTTTATC-AA
** * **
65038695 TAAAGGAAAAAATTGTCATTTTGCCACA
1 T-AAGGGCAAAATAGTCATTTTATCA-A
*
65038723 TAAGGGCAAAACCA-TCATTTTATCAA
1 TAAGGGCAAAA-TAGTCATTTTATCAA
* * *
65038749 TTAAGGGTAAAATTGTCATTTTATCGAT
1 -TAAGGGCAAAATAGTCATTTTATC-AA
65038777 TAAGGG
1 TAAGGG
65038783 TCCAGGTACG
Statistics
Matches: 235, Mismatches: 51, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
25 4 0.02
26 25 0.11
27 182 0.77
28 23 0.10
29 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (26 bp):
TAAGGGCAAAATAGTCATTTTATCAA
Found at i:65041042 original size:29 final size:31
Alignment explanation
Indices: 65040967--65041070 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 31
65040957 GGTTTTAAAA
* * * * *
65040967 TATCAGGTACTACGTACTGGTGATTATATTA
1 TATCAGGTACTATGTACCGATGCTTATATTG
*
65040998 TATTAGGTACTATGTACCGATGAC-TATA-T-
1 TATCAGGTACTATGTACCGATG-CTTATATTG
* *
65041027 TATCAGGTACTTTGTATCGATGCTTATATTG
1 TATCAGGTACTATGTACCGATGCTTATATTG
65041058 TATCAGGTACTAT
1 TATCAGGTACTAT
65041071 ATGCCAGTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 1 0.02
29 23 0.38
30 2 0.03
31 34 0.57
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.40
Consensus pattern (31 bp):
TATCAGGTACTATGTACCGATGCTTATATTG
Found at i:65047308 original size:17 final size:17
Alignment explanation
Indices: 65047274--65047308 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
65047264 CAACTAAAAC
**
65047274 TTAATTTATTATTTATA
1 TTAATTTATTATAAATA
65047291 TTAATTTATTATAAATA
1 TTAATTTATTATAAATA
65047308 T
1 T
65047309 ATCTACTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTAATTTATTATAAATA
Found at i:65047319 original size:28 final size:29
Alignment explanation
Indices: 65047287--65047352 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 29
65047277 ATTTATTATT
*
65047287 TATATTAATTTATTATAAATAT-ATCTAC
1 TATATTAATTTATTATAAATATAATCTAA
* *
65047315 TATA-TAATTTATTTTTAATATAATCTAA
1 TATATTAATTTATTATAAATATAATCTAA
65047343 TATATATAAT
1 TATAT-TAAT
65047353 ATCATTCACT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 15 0.47
28 13 0.41
30 4 0.12
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (29 bp):
TATATTAATTTATTATAAATATAATCTAA
Found at i:65066812 original size:28 final size:28
Alignment explanation
Indices: 65066779--65066874 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
65066769 ATAAATATAT
65066779 GCACTATGTGTGCGAAATTATTAACCGA
1 GCACTATGTGTGCGAAATTATTAACCGA
* * **
65066807 GCACTATGTGTGCTAGATCGGGTGTAA--G-
1 GCACTATGTGTGCGAAAT--TAT-TAACCGA
65066835 GCACTATGTGTGCGAAATTATTAACCGA
1 GCACTATGTGTGCGAAATTATTAACCGA
65066863 GCACTATGTGTG
1 GCACTATGTGTG
65066875 TGAGATCGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 44 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAAATTATTAACCGA
Found at i:65066894 original size:28 final size:28
Alignment explanation
Indices: 65066807--65066904 Score: 87
Period size: 28 Copynumber: 3.5 Consensus size: 28
65066797 TATTAACCGA
65066807 GCACTATGTGTGCT-AGATCGGGTGTAAG
1 GCACTATGTGTG-TGAGATCGGGTGTAAG
* * **
65066835 GCACTATGTGTGCGAAAT--TAT-TAACCG
1 GCACTATGTGTGTGAGATCGGGTGTAA--G
65066862 AGCACTATGTGTGTGAGATCGGGTGTAAG
1 -GCACTATGTGTGTGAGATCGGGTGTAAG
*
65066891 GCACTGTGTGTGTG
1 GCACTATGTGTGTG
65066905 CGAAATTATT
Statistics
Matches: 54, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 44 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.22, C:0.14, G:0.34, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGTGAGATCGGGTGTAAG
Found at i:65066910 original size:58 final size:56
Alignment explanation
Indices: 65066779--65066914 Score: 229
Period size: 56 Copynumber: 2.4 Consensus size: 56
65066769 ATAAATATAT
65066779 GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCTAGATCGGGTGTAAG
1 GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCTAGATCGGGTGTAAG
65066835 GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTG-TGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCT-AGATCGGGTGTAAG
*
65066891 GCACTGTGTGTGTGCGAAATTATT
1 GCAC--TATGTGTGCGAAATTATT
65066915 TAGGGAATAT
Statistics
Matches: 76, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
55 1 0.01
56 58 0.76
58 17 0.22
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (56 bp):
GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCTAGATCGGGTGTAAG
Found at i:65072272 original size:40 final size:40
Alignment explanation
Indices: 65072214--65072383 Score: 286
Period size: 40 Copynumber: 4.2 Consensus size: 40
65072204 GAAACAACAA
*
65072214 GCACGAATGCCTTTGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
*
65072254 GCACGAATGCCTTCGGGACTTAACCCGATTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
* * *
65072294 GCACGAATGCCTCCGGGGCTTAACCCGGTTATAATAACCT
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
65072334 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
*
65072374 GCACAAATGC
1 GCACGAATGC
65072384 TATTGTAACA
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 120 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
Found at i:65073858 original size:37 final size:37
Alignment explanation
Indices: 65073808--65073923 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
65073798 TTATTACGAA
* * *
65073808 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
*
65073845 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
65073882 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
65073919 GTCTT
1 GTCTT
65073924 TAGAGCTCGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
Found at i:65074216 original size:49 final size:49
Alignment explanation
Indices: 65074042--65074460 Score: 678
Period size: 47 Copynumber: 8.8 Consensus size: 49
65074032 CCCTTCGGGA
* * * * *
65074042 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65074089 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65074136 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65074183 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65074232 CTTATCAC--ATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65074279 CTTATCAC--ATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65074326 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65074375 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65074424 CTTATCCCATATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATATACACTTTCACATTCATCACAT
65074461 AGAATCCTAA
Statistics
Matches: 352, Mismatches: 14, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 181 0.51
49 170 0.48
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65074311 original size:143 final size:143
Alignment explanation
Indices: 65074042--65074460 Score: 698
Period size: 143 Copynumber: 2.9 Consensus size: 143
65074032 CCCTTCGGGA
* * * * * * *
65074042 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65074105 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65074170 TCGGCCATTAGGC
131 TCGGCCATTAGGC
65074183 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
65074248 AATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65074313 TCGGCCATTAGGC
131 TCGGCCATTAGGC
65074326 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
65074391 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCCCATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATATATACACTTTCACATTCAT
65074456 CACAT
127 CACAT
65074461 AGAATCCTAA
Statistics
Matches: 260, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
141 10 0.04
142 1 0.00
143 178 0.68
145 43 0.17
147 28 0.11
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:65074543 original size:192 final size:189
Alignment explanation
Indices: 65074093--65074460 Score: 542
Period size: 192 Copynumber: 1.9 Consensus size: 189
65074083 CTCGGCCCTG
* * * * *
65074093 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT--ATATACACTT
1 TCACAAATATACACTTTCACGTT-ATCACATCGACAATTAGGCCTTATCACATACACATACACTT
65074156 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
65 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
* *
65074221 GGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTA
130 GGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATCAG-CA-TAGGCCTAA
* * * * *
65074283 TCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACAAATATACACTTTCACGTT-ATCACATCGACAATTAGGCCTTATCACATACACATACACTT
65074348 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
65 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
* *
65074413 GGCCATTAGGCCTTATCCCATATATATACACTTTCACATTCATCACAT
130 GGCCATTAGGCCTTAT--CACATATATACAATTTCACATTCATCACAT
65074461 AGAATCCTAA
Statistics
Matches: 171, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
190 52 0.30
192 91 0.53
194 28 0.16
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (189 bp):
TCACAAATATACACTTTCACGTTATCACATCGACAATTAGGCCTTATCACATACACATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATCAGCATAGGCCTAA
Found at i:65083428 original size:93 final size:93
Alignment explanation
Indices: 65083316--65083487 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
65083306 CGCCCATAAG
***
65083316 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
65083381 ACGAGTTCGGATGCCTAGTTACACCTCA
66 ACAAGTTCGGATGCCTAGTTACACCTCA
*
65083409 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65083474 ACAAGTTCGGATGC
66 ACAAGTTCGGATGC
65083488 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACACCTCA
Found at i:65083484 original size:46 final size:46
Alignment explanation
Indices: 65083309--65083484 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
65083299 TGTAACCCGC
* ***
65083309 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
65083355 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACA-
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
65083404 CC-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
65083448 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
65083485 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:65090519 original size:93 final size:93
Alignment explanation
Indices: 65090407--65090578 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
65090397 CGCCCATAAG
* *
65090407 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65090472 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
65090500 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65090565 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
65090579 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:65090575 original size:46 final size:46
Alignment explanation
Indices: 65090400--65090575 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
65090390 TGTAACCCGC
* * *
65090400 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
65090446 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
65090496 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
65090539 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
65090576 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:65095431 original size:11 final size:11
Alignment explanation
Indices: 65095415--65095444 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
65095405 ATGCTTAATA
65095415 CCATTTTCATT
1 CCATTTTCATT
65095426 CCATTTTCATT
1 CCATTTTCATT
65095437 CCAATTTT
1 CC-ATTTT
65095445 ACTCCATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.20, C:0.27, G:0.00, T:0.53
Consensus pattern (11 bp):
CCATTTTCATT
Found at i:65099985 original size:33 final size:33
Alignment explanation
Indices: 65099948--65100014 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
65099938 ACCATAATCA
65099948 CTAAACCCACAACCTACTTATCCATGATCAAAC
1 CTAAACCCACAACCTACTTATCCATGATCAAAC
65099981 CTAAACCCACAACCTACTTATCCATGATCAAAC
1 CTAAACCCACAACCTACTTATCCATGATCAAAC
65100014 C
1 C
65100015 ATGTCCCTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.39, C:0.37, G:0.03, T:0.21
Consensus pattern (33 bp):
CTAAACCCACAACCTACTTATCCATGATCAAAC
Found at i:65130485 original size:34 final size:34
Alignment explanation
Indices: 65130447--65130521 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
65130437 TATCCTTTGG
*
65130447 GGGTTTTCAAATCGATTGTTCTCATTCTCTAGTA
1 GGGTTTTCAAATCGATTGCTCTCATTCTCTAGTA
*
65130481 GGGTTTTTAAATCGATTGCTCTCATTCTCTAGTA
1 GGGTTTTCAAATCGATTGCTCTCATTCTCTAGTA
65130515 GTGGTTT
1 G-GGTTT
65130522 ACACTACGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (34 bp):
GGGTTTTCAAATCGATTGCTCTCATTCTCTAGTA
Found at i:65131964 original size:37 final size:37
Alignment explanation
Indices: 65131914--65131992 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
65131904 TTATAACGAA
* * *
65131914 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAACTCATCGG
*
65131951 GTCTTACCCGGACAAAATTCCCACACGTACTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAACTCATCGG
65131988 GTCTT
1 GTCTT
65131993 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAACTCATCGG
Found at i:65132189 original size:47 final size:47
Alignment explanation
Indices: 65132111--65132505 Score: 673
Period size: 47 Copynumber: 8.4 Consensus size: 47
65132101 CCCTTCGGGA
* * * * * * *
65132111 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65132158 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65132205 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65132252 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65132299 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65132346 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65132393 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65132440 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65132487 CTTATCACATATATACACT
1 CTTATCACATATATACACT
65132506 GTCTTGGCTG
Statistics
Matches: 331, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 331 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65136717 original size:40 final size:40
Alignment explanation
Indices: 65136666--65136762 Score: 110
Period size: 40 Copynumber: 2.4 Consensus size: 40
65136656 CTATCTCGGT
* *
65136666 ATCGCATACTTAGTGCCTCA-TATAGCCT-AAGCTATTCCAT
1 ATCGCACACTTAGTGCCT-ATTATAG-CTGAAGCTATTCCAA
* *
65136706 TTCGCACACTTAGTG-CTATTTATAGCTGAAGCTATTTCAA
1 ATCGCACACTTAGTGCCTA-TTATAGCTGAAGCTATTCCAA
65136746 ATCGCACACTTAGTGCC
1 ATCGCACACTTAGTGCC
65136763 GAACATAGTC
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
38 1 0.02
39 4 0.08
40 42 0.88
41 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCTATTATAGCTGAAGCTATTCCAA
Found at i:65139243 original size:21 final size:22
Alignment explanation
Indices: 65139210--65139264 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
65139200 ATGGCCTCTA
* *
65139210 ACACAGGCATGTCCCATGG-TC
1 ACACGGGCGTGTCCCATGGATC
* *
65139231 ACACGGGTGTGTCCCTTGGATC
1 ACACGGGCGTGTCCCATGGATC
*
65139253 ATACGGGCGTGT
1 ACACGGGCGTGT
65139265 GAGCGCTGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (22 bp):
ACACGGGCGTGTCCCATGGATC
Found at i:65146241 original size:42 final size:43
Alignment explanation
Indices: 65146188--65146268 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
65146178 TCTGAACTCA
* **
65146188 TTCACCGGCA-TTTCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
65146230 TTCACTGGCATTTTAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTTTAGCCTGCTAGGCCCGAAGCCCGATA
65146269 ATATTATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 9 0.26
43 25 0.74
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (43 bp):
TTCACCGGCATTTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:65146496 original size:28 final size:28
Alignment explanation
Indices: 65146435--65146506 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
65146425 TTGATATTTT
* *
65146435 GCACATTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
65146463 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
65146491 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
65146507 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:65155620 original size:246 final size:246
Alignment explanation
Indices: 65155178--65155681 Score: 983
Period size: 246 Copynumber: 2.1 Consensus size: 246
65155168 GCAATCTATT
* *
65155178 CAAA-TCACTAGATTCAATTATGACTATTTCATTATTCTTTCATCTTAAATCAATAATTTTTCGT
1 CAAACTCAGTAGATTCAATTATGACTATTTCATTATTCTTGCATCTTAAATCAATAATTTTTCGT
65155242 TTGCAGTTCACCACAGCATCATGCAAAGTTAACCAATCCATACCCAGAATTACATTAAATTCATC
66 TTGCAGTTCACCACAGCATCATGCAAAGTTAACCAATCCATACCCAGAATTACATTAAATTCATC
65155307 AAAAGGTAACAACATCAGATTAGCTGGAAAATAAGTGTCTCGAAACATTAACGGACAATTCCTGC
131 AAAAGGTAACAACATCAGATTAGCTGGAAAATAAGTGTCTCGAAACATTAACGGACAATTCCTGC
65155372 ATACTTTATCAACCAGAACACATCTGGCTAGAGGGTTCGAAACTCTAATTA
196 ATACTTTATCAACCAGAACACATCTGGCTAGAGGGTTCGAAACTCTAATTA
65155423 CAAACTCAGTAGATTCAATTATGACTATTTCATTATTCTTGCATCTTAAATCAATAATTTTTCGT
1 CAAACTCAGTAGATTCAATTATGACTATTTCATTATTCTTGCATCTTAAATCAATAATTTTTCGT
65155488 TTGCAGTTCACCACAGCATCATGCAAAGTTAACCAATCCATACCCAGAATTACATTAAATTCATC
66 TTGCAGTTCACCACAGCATCATGCAAAGTTAACCAATCCATACCCAGAATTACATTAAATTCATC
65155553 AAAAGGTAACAACATCAGATTAGCTGGAAAATAAGTGTCTCGAAACATTAACGGACAATTCCTGC
131 AAAAGGTAACAACATCAGATTAGCTGGAAAATAAGTGTCTCGAAACATTAACGGACAATTCCTGC
65155618 ATACTTTATCAACCAGAACACATCTGGCTAGAGGGTTCGAAACTCTAATTA
196 ATACTTTATCAACCAGAACACATCTGGCTAGAGGGTTCGAAACTCTAATTA
65155669 CAAACTCAGTAGA
1 CAAACTCAGTAGA
65155682 CTCTACAGGC
Statistics
Matches: 256, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
245 4 0.02
246 252 0.98
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (246 bp):
CAAACTCAGTAGATTCAATTATGACTATTTCATTATTCTTGCATCTTAAATCAATAATTTTTCGT
TTGCAGTTCACCACAGCATCATGCAAAGTTAACCAATCCATACCCAGAATTACATTAAATTCATC
AAAAGGTAACAACATCAGATTAGCTGGAAAATAAGTGTCTCGAAACATTAACGGACAATTCCTGC
ATACTTTATCAACCAGAACACATCTGGCTAGAGGGTTCGAAACTCTAATTA
Found at i:65160209 original size:127 final size:126
Alignment explanation
Indices: 65159990--65160285 Score: 353
Period size: 127 Copynumber: 2.3 Consensus size: 126
65159980 GAAAAAATTG
* * * *
65159990 AAACCCAGCACGGTATGGCATGATTCCTCGAATTTCCAAACATTGAACATTGTCTTGCTTTAGAA
1 AAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGACTTGCTTTAGAA
* *
65160055 TTTATAAAACACGAGTAAAATACCAAAGGAATATTCAATTATTTGGAACAAACCGG-AAATCA
66 CTTAGAAAACACGAGTAAAATACCAAAGGAATATTCAATTATTTGG-ACAAA-CGGAAAATCA
** *
65160117 AAACCCAGTGCGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGACTTGTTTTAGAA
1 AAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGACTTGCTTTAGAA
** * ** ** * *
65160182 CTTAGAAAGTACG-GATGAAATTTCAAAGGAATATTTGATTATTTGGTCAAACGGAAAATCG
66 CTTAGAAAACACGAG-TAAAATACCAAAGGAATATTCAATTATTTGGACAAACGGAAAATCA
* * * *
65160243 AAACCCAGCACGGTAGAGCACGATTCCTCGAGTTCCCAAACAT
1 AAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACAT
65160286 CAATTATTAC
Statistics
Matches: 143, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
125 3 0.02
126 47 0.33
127 93 0.65
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.26
Consensus pattern (126 bp):
AAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGACTTGCTTTAGAA
CTTAGAAAACACGAGTAAAATACCAAAGGAATATTCAATTATTTGGACAAACGGAAAATCA
Found at i:65162509 original size:21 final size:19
Alignment explanation
Indices: 65162485--65162523 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
65162475 CGTGTACGGG
*
65162485 GGCTGTGCGCTGGCGTATGGA
1 GGCTGGGCG-TGGC-TATGGA
65162506 GGCTGGGCGTGGCTATGG
1 GGCTGGGCGTGGCTATGG
65162524 TGCCAGGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 4 0.24
21 8 0.47
ACGTcount: A:0.08, C:0.18, G:0.51, T:0.23
Consensus pattern (19 bp):
GGCTGGGCGTGGCTATGGA
Found at i:65163996 original size:68 final size:68
Alignment explanation
Indices: 65163849--65164004 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
65163839 AGCCGATTTG
* * * * *
65163849 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
65163914 TATC
65 TATA
* *
65163918 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
65163980 ATATAGTA
62 ATATA-TA
65163988 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
65164005 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:65165278 original size:14 final size:14
Alignment explanation
Indices: 65165259--65165288 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
65165249 AGCTTTTAAT
*
65165259 CTGCTCTACTGCAA
1 CTGCTCCACTGCAA
65165273 CTGCTCCACTGCAA
1 CTGCTCCACTGCAA
65165287 CT
1 CT
65165289 TCAAGGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.13, T:0.27
Consensus pattern (14 bp):
CTGCTCCACTGCAA
Found at i:65165511 original size:46 final size:44
Alignment explanation
Indices: 65165273--65165843 Score: 370
Period size: 45 Copynumber: 12.7 Consensus size: 44
65165263 TCTACTGCAA
* * * * *
65165273 CTGCTCCACTGCAACTTCAAGGAGATACGGTTCGTGTATTTTTATC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGATT-G-GTAATTTTATC
* * * *
65165319 CTGCTCTACTGCAACTTCAGAGAGATAAGGATTGTTACTTCGT-T-
1 CTGCTCTACTGCAACTTCAGGGAGATAA-GATTGGTAATT-TTATC
* * ** * ** *
65165363 CTACTCCACTGCAACTTCAGGGAGATAAGATCTACTAACTTCGTT
1 CTGCTCTACTGCAACTTCAGGGAGATAAGAT-TGGTAATTTTATC
* * ** * *
65165408 CTGCTCCATTGCAACTTCAGGGAGATAAGATCTACTAACTTCAGT-
1 CTGCTCTACTGCAACTTCAGGGAGATAAGAT-TGGTAATTTTA-TC
* * *
65165453 CTGCTCCACTGCAACTTCAGGAAGATGAGACTTGGGTAATTTTATC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGA-TT-GGTAATTTTATC
* * * *
65165499 CTGCTCTACTGCAACTTCAGAGAGATAAGGATTGTTACTTTGAT-
1 CTGCTCTACTGCAACTTCAGGGAGATAA-GATTGGTAATTTTATC
* * * *
65165543 CTGCT-TCACTACAACTTCAGGGAGATAAGATCTGTTAACTTCAGT-
1 CTGCTCT-ACTGCAACTTCAGGGAGATAAGAT-TGGTAATTTTA-TC
* *
65165588 CTGCTCTACTGCAACTTTAGGGAGATGAGACTTGGGTAATTTTATC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGA-TT-GGTAATTTTATC
* * * * **
65165634 CTACTCTACTGCAACTTCAGAGAGATAAGGATTGTTACTTCGAT-
1 CTGCTCTACTGCAACTTCAGGGAGATAA-GATTGGTAATTTTATC
* * * *
65165678 ATGCTCTACTGCAACTCCAGGGAGATAAGATCTGCTAACTTTAGTC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGAT-TGGTAATTTTA-TC
* *
65165724 C-GCTCCACTGCAACTTCAGGGAGATGAGACTTGGGTAATTTTATC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGA-TT-GGTAATTTTATC
** ** *
65165769 CTGCTCTACTGCAACTTCAAAGAGATAAGGATT-GTGGCTTTGAT-
1 CTGCTCTACTGCAACTTCAGGGAGATAA-GATTGGT-AATTTTATC
* * *
65165813 CTGCTCCACTGCAACTTCAGGGGGACAAGAT
1 CTGCTCTACTGCAACTTCAGGGAGATAAGAT
65165844 CTGCTATCTT
Statistics
Matches: 419, Mismatches: 80, Indels: 55
0.76 0.14 0.10
Matches are distributed among these distances:
43 13 0.03
44 117 0.28
45 152 0.36
46 128 0.31
47 9 0.02
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (44 bp):
CTGCTCTACTGCAACTTCAGGGAGATAAGATTGGTAATTTTATC
Found at i:65165515 original size:180 final size:180
Alignment explanation
Indices: 65165273--65165613 Score: 501
Period size: 180 Copynumber: 1.9 Consensus size: 180
65165263 TCTACTGCAA
* * *
65165273 CTGCTCCACTGCAACTTCAAGGAGATACGGTTCGTGTATTTTTATCCTGCTCTACTGCAACTTCA
1 CTGCTCCACTGCAACTTCAAGGAGATACGCTTCGGGTAATTTTATCCTGCTCTACTGCAACTTCA
* *
65165338 GAGAGATAAGGATTGTTACTTCGTTCTACTCCACTGCAACTTCAGGGAGATAAGATCTACTAACT
66 GAGAGATAAGGATTGTTACTTCGATCTACTCCACTACAACTTCAGGGAGATAAGATCTACTAACT
*
65165403 TC-GTTCTGCTCCATTGCAACTTCAGGGAGATAAGATCTACTAACTTCAGT
131 TCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTAACTTCAGT
65165453 CTGCTCCACTGCAACTTC-AGGAAGATGA-GACTT-GGGTAATTTTATCCTGCTCTACTGCAACT
1 CTGCTCCACTGCAACTTCAAGG-AGAT-ACG-CTTCGGGTAATTTTATCCTGCTCTACTGCAACT
* * * **
65165515 TCAGAGAGATAAGGATTGTTACTTTGATCTGCTTCACTACAACTTCAGGGAGATAAGATCTGTTA
63 TCAGAGAGATAAGGATTGTTACTTCGATCTACTCCACTACAACTTCAGGGAGATAAGATCTACTA
* *
65165580 ACTTCAGTCTGCTCTACTGCAACTTTAGGGAGAT
128 ACTTCAGTCTGCTCCACTGCAACTTCAGGGAGAT
65165614 GAGACTTGGG
Statistics
Matches: 144, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
179 3 0.02
180 137 0.95
181 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (180 bp):
CTGCTCCACTGCAACTTCAAGGAGATACGCTTCGGGTAATTTTATCCTGCTCTACTGCAACTTCA
GAGAGATAAGGATTGTTACTTCGATCTACTCCACTACAACTTCAGGGAGATAAGATCTACTAACT
TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACTAACTTCAGT
Found at i:65165546 original size:135 final size:135
Alignment explanation
Indices: 65165363--65165930 Score: 759
Period size: 135 Copynumber: 4.2 Consensus size: 135
65165353 TTACTTCGTT
* * * * * *
65165363 CTACTCCACTGCAACTTCAGGGAGATAA-GATCTACTAACTTCGTTCTGCTCCATTGCAACTTCA
1 CTACTCTACTGCAACTTCAGAGAGATAAGGAT-T-GTTACTTCGATCTGCTCCACTGCAACTTCA
* *
65165427 GGGAGATAAGATCTACTAACTTCAGTCTGCTCCACTGCAACTTCAGGAAGATGAGACTTGGGTAA
64 GGGAGATAAGATCTGCTAACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATGAGACTTGGGTAA
65165492 TTTTATC
129 TTTTATC
* * * *
65165499 CTGCTCTACTGCAACTTCAGAGAGATAAGGATTGTTACTTTGATCTGCTTCACTACAACTTCAGG
1 CTACTCTACTGCAACTTCAGAGAGATAAGGATTGTTACTTCGATCTGCTCCACTGCAACTTCAGG
* * *
65165564 GAGATAAGATCTGTTAACTTCAGTCTGCTCTACTGCAACTTTAGGGAGATGAGACTTGGGTAATT
66 GAGATAAGATCTGCTAACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATGAGACTTGGGTAATT
65165629 TTATC
131 TTATC
* * *
65165634 CTACTCTACTGCAACTTCAGAGAGATAAGGATTGTTACTTCGATATGCTCTACTGCAACTCCAGG
1 CTACTCTACTGCAACTTCAGAGAGATAAGGATTGTTACTTCGATCTGCTCCACTGCAACTTCAGG
* *
65165699 GAGATAAGATCTGCTAACTTTAGTCCGCTCCACTGCAACTTCAGGGAGATGAGACTTGGGTAATT
66 GAGATAAGATCTGCTAACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATGAGACTTGGGTAATT
65165764 TTATC
131 TTATC
* * ** *
65165769 CTGCTCTACTGCAACTTCAAAGAGATAAGGATTGTGGCTTTGATCTGCTCCACTGCAACTTCAGG
1 CTACTCTACTGCAACTTCAGAGAGATAAGGATTGTTACTTCGATCTGCTCCACTGCAACTTCAGG
* * * * * *
65165834 GGGACAAGATCTGCTATCTTCCA-TCTGCTCCACTGTAACTTTAGGGAGATGAGACTT-GCT-AT
66 GAGATAAGATCTGCTAACTT-CAGTCTGCTCCACTGCAACTTCAGGGAGATGAGACTTGGGTAAT
* *
65165896 TTCAAC
130 TTTATC
*
65165902 CTACTCTATTGCAACGTT-AGAGAGATAAG
1 CTACTCTACTGCAAC-TTCAGAGAGATAAG
65165931 ATTTGCTATG
Statistics
Matches: 381, Mismatches: 48, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
133 29 0.08
134 4 0.01
135 318 0.83
136 27 0.07
137 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (135 bp):
CTACTCTACTGCAACTTCAGAGAGATAAGGATTGTTACTTCGATCTGCTCCACTGCAACTTCAGG
GAGATAAGATCTGCTAACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATGAGACTTGGGTAATT
TTATC
Found at i:65176806 original size:20 final size:20
Alignment explanation
Indices: 65176781--65176819 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65176771 GGATTTTCGT
* *
65176781 AATTTTTGAGAATTTGGTAA
1 AATTTTTAAAAATTTGGTAA
65176801 AATTTTTAAAAATTTGGTA
1 AATTTTTAAAAATTTGGTA
65176820 TTTGGTTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (20 bp):
AATTTTTAAAAATTTGGTAA
Found at i:65178488 original size:13 final size:13
Alignment explanation
Indices: 65178470--65178497 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
65178460 ATAAAGTGCG
65178470 TTAAAATCATTGT
1 TTAAAATCATTGT
65178483 TTAAAATCATTGT
1 TTAAAATCATTGT
65178496 TT
1 TT
65178498 TGGGCCCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (13 bp):
TTAAAATCATTGT
Found at i:65178682 original size:10 final size:10
Alignment explanation
Indices: 65178667--65178704 Score: 67
Period size: 10 Copynumber: 3.7 Consensus size: 10
65178657 TTTGATATAA
65178667 ATGATATGAC
1 ATGATATGAC
65178677 ATGATATGAC
1 ATGATATGAC
65178687 ATGATATGCAC
1 ATGATATG-AC
65178698 ATGATAT
1 ATGATAT
65178705 ATGCATTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (10 bp):
ATGATATGAC
Found at i:65178701 original size:21 final size:19
Alignment explanation
Indices: 65178659--65178705 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
65178649 CATGAGATTT
65178659 TGATATAAATGATATGACA
1 TGATATAAATGATATGACA
*
65178678 TGATATGACATGATATGCACA
1 TGATAT-AAATGATATG-ACA
65178699 TGATATA
1 TGATATA
65178706 TGCATTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 6 0.24
20 10 0.40
21 9 0.36
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.32
Consensus pattern (19 bp):
TGATATAAATGATATGACA
Found at i:65178786 original size:25 final size:24
Alignment explanation
Indices: 65178752--65178822 Score: 88
Period size: 25 Copynumber: 2.9 Consensus size: 24
65178742 AGGAAGTGCA
* *
65178752 AAAAGAGCTTTGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCTAGTTAACC
* *
65178776 GAAAAGGGCTTTGCCCCAGTTAATC
1 -AAAAGGGCTTTGCCCTAGTTAACC
65178801 AAAAGGGGCTTTGCCCTAGTTA
1 AAAA-GGGCTTTGCCCTAGTTA
65178823 TTAAAAGAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 4 0.10
25 36 0.90
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTAACC
Found at i:65178828 original size:24 final size:24
Alignment explanation
Indices: 65178758--65178834 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 24
65178748 TGCAAAAAGA
*
65178758 GCTTTGCCCTAGTTTACCGAAAA-GG
1 GCTTTGCCCTAG-TTATC-AAAAGGG
*
65178783 GCTTTGCCCCAGTTAATCAAAAGGG
1 GCTTTGCCCTAGTT-ATCAAAAGGG
* *
65178808 GCTTTGCCCTAGTTATTAAAAGAG
1 GCTTTGCCCTAGTTATCAAAAGGG
65178832 GCT
1 GCT
65178835 AGGCCTCCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
24 17 0.38
25 28 0.62
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
GCTTTGCCCTAGTTATCAAAAGGG
Found at i:65184811 original size:20 final size:20
Alignment explanation
Indices: 65184786--65184824 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65184776 GGATTTTCGT
* *
65184786 AATTTTTGAGAATTTGGTAA
1 AATTTTTAAAAATTTGGTAA
65184806 AATTTTTAAAAATTTGGTA
1 AATTTTTAAAAATTTGGTA
65184825 TTTGGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (20 bp):
AATTTTTAAAAATTTGGTAA
Found at i:65186711 original size:11 final size:11
Alignment explanation
Indices: 65186684--65186725 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
65186674 GATTTTGATA
65186684 TACATGATATG
1 TACATGATATG
65186695 -ACATGATATG
1 TACATGATATG
65186705 TACATGATATG
1 TACATGATATG
*
65186716 CACATGATAT
1 TACATGATAT
65186726 ACGCATGAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 10 0.34
11 19 0.66
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (11 bp):
TACATGATATG
Found at i:65186723 original size:22 final size:22
Alignment explanation
Indices: 65186681--65186761 Score: 94
Period size: 22 Copynumber: 3.7 Consensus size: 22
65186671 TGAGATTTTG
65186681 ATATACATGATATG-ACATGAT
1 ATATACATGATATGCACATGAT
*
65186702 ATGTACATGATATGCACATGAT
1 ATATACATGATATGCACATGAT
** *
65186724 ATACGCATGAGATGCACATGAT
1 ATATACATGATATGCACATGAT
*
65186746 ATACT-CATTATATGCA
1 ATA-TACATGATATGCA
65186762 TGGGCTGGGT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
21 13 0.26
22 37 0.74
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (22 bp):
ATATACATGATATGCACATGAT
Found at i:65186732 original size:11 final size:11
Alignment explanation
Indices: 65186685--65186749 Score: 60
Period size: 11 Copynumber: 6.0 Consensus size: 11
65186675 ATTTTGATAT
*
65186685 ACATGATAT-G
1 ACATGATATAC
**
65186695 ACATGATATGT
1 ACATGATATAC
*
65186706 ACATGATATGC
1 ACATGATATAC
65186717 ACATGATATAC
1 ACATGATATAC
* * *
65186728 GCATGAGATGC
1 ACATGATATAC
65186739 ACATGATATAC
1 ACATGATATAC
65186750 TCATTATATG
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
10 9 0.20
11 36 0.80
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (11 bp):
ACATGATATAC
Found at i:65186829 original size:25 final size:25
Alignment explanation
Indices: 65186793--65186865 Score: 128
Period size: 25 Copynumber: 2.9 Consensus size: 25
65186783 GGAGGAAGTG
*
65186793 CAAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTAAC
*
65186818 CGAAAAGGGCTTTGCCCCAGTTAAC
1 CAAAAAGGGCTTTGCCCCAGTTAAC
65186843 CAAAAAGGGCTTTGCCCCAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
65186866 TTAAAAGAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAC
Found at i:65186888 original size:50 final size:50
Alignment explanation
Indices: 65186793--65186890 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
65186783 GGAGGAAGTG
**
65186793 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTAAC
1 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTAAC
**
65186843 CAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTTA
65186891 TATGATAAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
48 5 0.12
49 10 0.24
50 27 0.64
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (50 bp):
CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTAAC
Found at i:65188676 original size:127 final size:125
Alignment explanation
Indices: 65188520--65188822 Score: 401
Period size: 127 Copynumber: 2.4 Consensus size: 125
65188510 TCCAACAAAA
* * *
65188520 AAAAAACAAAACCCAGCATGTAGGGCACGATTTCTCGAATTTCCAAACATTGAACATTGCATTGT
1 AAAAATCAAAACCCAGCACGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCATTGT
* *
65188585 TTTAGAATTTATAAAACACGAGTGAAATACCAAAGGAATATTCAATTATTTGGAACAAACCG
66 TTTAGAATTTAGAAAACACGAATGAAATACCAAAGGAATATTCAATTATTTGG-ACAAA-CG
* * * *
65188647 -GAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTGCCTTG
1 AAAAATCAAAACCCAGCACG-TAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCATTG
** ** ** *
65188711 TTTTAGAATTTAGAAAGTACGAATGAAATTTCAAAGGAATATTTGATTATTTGGTCAAACG
65 TTTTAGAATTTAGAAAACACGAATGAAATACCAAAGGAATATTCAATTATTTGGACAAACG
* *
65188772 AAAAATCAAAACCCAGCACGGTAGGGCACGATTCCTCGAGTTCCCAAACAT
1 AAAAATCAAAACCCAGCAC-GTAGGGCACGATTCCTCGAATTTCCAAACAT
65188823 CAATTATTAC
Statistics
Matches: 152, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
125 2 0.01
126 62 0.41
127 88 0.58
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (125 bp):
AAAAATCAAAACCCAGCACGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCATTGT
TTTAGAATTTAGAAAACACGAATGAAATACCAAAGGAATATTCAATTATTTGGACAAACG
Found at i:65198120 original size:83 final size:83
Alignment explanation
Indices: 65198018--65198183 Score: 269
Period size: 83 Copynumber: 2.0 Consensus size: 83
65198008 CAAATACACT
* *
65198018 TGATTTATCATCATATTCAACCATAATCAATTATATATACGATCTATGTAAAATTCAAGCATCAA
1 TGATTTATCATCATATTCAACCATAATAAATTATATATACAATCTATGTAAAATTCAAGCATCAA
*
65198083 AAACATATTTGTAGCATC
66 AAACATATTTGTAACATC
* * *
65198101 TGATTTATCATCGTTTTCAACCATAATAAATTATATATACAATCTATGTATAATTCAAGCATCAA
1 TGATTTATCATCATATTCAACCATAATAAATTATATATACAATCTATGTAAAATTCAAGCATCAA
*
65198166 AAATATATTTGTAACATC
66 AAACATATTTGTAACATC
65198184 ATGTTTTACG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 76 1.00
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.37
Consensus pattern (83 bp):
TGATTTATCATCATATTCAACCATAATAAATTATATATACAATCTATGTAAAATTCAAGCATCAA
AAACATATTTGTAACATC
Found at i:65199365 original size:25 final size:25
Alignment explanation
Indices: 65199317--65199365 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
65199307 GAGCACACTC
* **
65199317 TTGAGCCATGCATCAGGATGCTTAG
1 TTGAGCCATGCAACAGGACACTTAG
*
65199342 TTGAGCCATGTAACAGGACACTTA
1 TTGAGCCATGCAACAGGACACTTA
65199366 TCCAGGCTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
TTGAGCCATGCAACAGGACACTTAG
Found at i:65205454 original size:3 final size:3
Alignment explanation
Indices: 65205441--65205525 Score: 56
Period size: 3 Copynumber: 28.3 Consensus size: 3
65205431 GAGGGCATAT
*
65205441 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATTT ATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA A-TA ATA -AT-A -ATA ATA
*
65205485 ATA ATA ATA AT- ATAA ATA ATA GTA A-A ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
65205526 AACGAAGCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 22
0.71 0.05 0.24
Matches are distributed among these distances:
2 11 0.17
3 45 0.68
4 8 0.12
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:65205467 original size:18 final size:18
Alignment explanation
Indices: 65205437--65205525 Score: 83
Period size: 18 Copynumber: 4.7 Consensus size: 18
65205427 TGGAGAGGGC
65205437 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
*
65205455 ATATAAATAATAATTTATA
1 ATATAAATAATAA-TAATA
*
65205474 CATGAGAAATAATAATAATA
1 -AT-ATAAATAATAATAATA
*
65205494 ATATAAATAATAGTAA-A
1 ATATAAATAATAATAATA
65205511 ATAATAAAATAATAA
1 AT-AT-AAATAATAA
65205526 AACGAAGCTC
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
17 6 0.10
18 23 0.39
19 14 0.24
20 6 0.10
21 10 0.17
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:65205525 original size:8 final size:8
Alignment explanation
Indices: 65205481--65205527 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
65205471 ATACATGAGA
65205481 AATAATAAT
1 AATAA-AAT
*
65205490 AATAATAT
1 AATAAAAT
*
65205498 AA-ATAAT
1 AATAAAAT
*
65205505 AGTAAAAT
1 AATAAAAT
65205513 AATAAAAT
1 AATAAAAT
65205521 AATAAAA
1 AATAAAA
65205528 CGAAGCTCTC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
7 4 0.13
8 22 0.71
9 5 0.16
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (8 bp):
AATAAAAT
Found at i:65205880 original size:20 final size:21
Alignment explanation
Indices: 65205857--65205952 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 21
65205847 TTCTTTCCAA
65205857 AAAAACAAAAAAA-CACCTCC
1 AAAAACAAAAAAACCACCTCC
* *
65205877 AAAAAAAAAAAAACCTCCTCC
1 AAAAACAAAAAAACCACCTCC
**
65205898 -AAAACAAAGAACAATCCTTCTCC
1 AAAAACAAA-AA-AA-CCACCTCC
* * *
65205921 AAAAAACCAAAAACCCACCCCC
1 -AAAAACAAAAAAACCACCTCC
65205943 TAAAAACAAA
1 -AAAAACAAA
65205953 GTCTTGAATG
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
20 19 0.32
21 8 0.14
22 15 0.25
23 8 0.14
24 2 0.03
25 7 0.12
ACGTcount: A:0.59, C:0.31, G:0.01, T:0.08
Consensus pattern (21 bp):
AAAAACAAAAAAACCACCTCC
Found at i:65205886 original size:18 final size:19
Alignment explanation
Indices: 65205858--65205894 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
65205848 TCTTTCCAAA
*
65205858 AAAACAAAAAAACACCTCC
1 AAAACAAAAAAAAACCTCC
65205877 AAAA-AAAAAAAAACCTCC
1 AAAACAAAAAAAAACCTCC
65205895 TCCAAAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.68, C:0.27, G:0.00, T:0.05
Consensus pattern (19 bp):
AAAACAAAAAAAAACCTCC
Found at i:65205924 original size:23 final size:21
Alignment explanation
Indices: 65205852--65205935 Score: 78
Period size: 21 Copynumber: 3.9 Consensus size: 21
65205842 TAACCTTCTT
* *
65205852 TCCAAAAAAACAAAAAAACACC
1 TCCAAAAAAA-AAAAAACCTCC
65205874 TCCAAAAAAAAAAAAACCTCC
1 TCCAAAAAAAAAAAAACCTCC
* * *
65205895 TCCAAAACAAAGAACAATCCTTC
1 TCCAAAA-AAA-AAAAAACCTCC
**
65205918 TCCAAAAAACCAAAAACC
1 TCCAAAAAAAAAAAAACC
65205936 CACCCCCTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
21 21 0.41
22 15 0.29
23 15 0.29
ACGTcount: A:0.60, C:0.30, G:0.01, T:0.10
Consensus pattern (21 bp):
TCCAAAAAAAAAAAAACCTCC
Found at i:65206090 original size:4 final size:4
Alignment explanation
Indices: 65206081--65206111 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
65206071 GGCCAAGGTT
65206081 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
65206112 TGTGTTTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:65206498 original size:44 final size:44
Alignment explanation
Indices: 65206450--65207132 Score: 530
Period size: 44 Copynumber: 15.5 Consensus size: 44
65206440 CTTCGATCCA
* * *
65206450 TTCCCTGTAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
* * * * **
65206494 TTCCCTATAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTAC
1 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTC-AACTTG
** * * * * * * *
65206538 TTCATTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TTCG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT-G
* *
65206582 TTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
*
65206626 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
* * *
65206670 TTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TG
1 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTTG
* * * * * * * * * *
65206713 CTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCGATTTG
1 -TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
* * * *
65206758 TTCTCTATAAGCACAGGGATGTCAAATCTGTTGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
*
65206802 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
* * * *
65206846 -TCCCTATAATCACAGGGATGCC--ATGCTGAAATCTTTGATC-TG
1 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTTG
** * * * * * * * *
65206888 CTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCG
1 -TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-TG
* *
65206933 TTCCCTATAAGCACAGGGATTCCAAATCTGATGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
* * *
65206977 TTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TG
1 TTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTTG
* * * * * * * * *
65207020 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTG
1 -TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
* *
65207065 TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
65207109 TTCCCTATAAGCACAGGGATGCCA
1 TTCCCTATAAGCACAGGGATGCCA
65207133 TGCTGAAATC
Statistics
Matches: 498, Mismatches: 114, Indels: 54
0.75 0.17 0.08
Matches are distributed among these distances:
41 2 0.00
42 13 0.03
43 48 0.10
44 395 0.79
45 32 0.06
46 8 0.02
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (44 bp):
TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTG
Found at i:65206725 original size:176 final size:176
Alignment explanation
Indices: 65206450--65207000 Score: 960
Period size: 176 Copynumber: 3.1 Consensus size: 176
65206440 CTTCGATCCA
* *
65206450 TTCCCTGTAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
* * * *
65206515 TCATGCTGAAATCTTCGATCTACTTCATTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
66 CCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
65206580 CGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTG
131 CGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTG
65206626 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
*
65206691 CCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCGATT
66 CCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
* * *
65206756 TGTTCTCTATAAGCACAGGGATGTCAAATCTGTTGTTTTCAACTTG
131 CGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTG
*
65206802 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG-TCCCTATAATCACAGGGATG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
* *
65206866 CCATGCTGAAATCTTTGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATC
66 CCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
* *
65206931 CGTTCCCTATAAGCACAGGGATTCCAAATCTGATGTTTTCAACTTG
131 CGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTG
65206977 TTCCCTATAAGCACAGGGATGCCA
1 TTCCCTATAAGCACAGGGATGCCA
65207001 TGCTGAAATC
Statistics
Matches: 356, Mismatches: 19, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
175 146 0.41
176 210 0.59
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (176 bp):
TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
CCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATT
CGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTG
Found at i:65207036 original size:132 final size:132
Alignment explanation
Indices: 65206801--65207155 Score: 640
Period size: 132 Copynumber: 2.7 Consensus size: 132
65206791 TTTTCAACTT
*
65206801 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTG-TCCCTATAATCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
*
65206865 GCCATGCTGAAATCTTTGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
66 GCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
65206930 CC
131 CC
*
65206932 GTTCCCTATAAGCACAGGGATTCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
65206997 GCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
66 GCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
**
65207062 TT
131 CC
*
65207064 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
*
65207129 GCCATGCTGAAATCTTCGATCTGCTTC
66 GCCATGCTGAAATCTTTGATCTGCTTC
65207156 TCTGCAACTT
Statistics
Matches: 215, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
131 44 0.20
132 171 0.80
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
GCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
CC
Found at i:65207283 original size:68 final size:68
Alignment explanation
Indices: 65207199--65207397 Score: 294
Period size: 68 Copynumber: 2.9 Consensus size: 68
65207189 TCTTCTTCCA
* * * *
65207199 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
65207264 -TT
66 CCT
*
65207266 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
65207331 TCCT
65 TCCT
* * *
65207335 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTACAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
65207398 AATTTGTAAT
Statistics
Matches: 120, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
67 6 0.05
68 113 0.94
69 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:65207638 original size:132 final size:131
Alignment explanation
Indices: 65207502--65208634 Score: 1497
Period size: 132 Copynumber: 8.6 Consensus size: 131
65207492 TAAATTCAAC
* * * *
65207502 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTTAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * * **
65207567 GGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCCTAGGGGGTTAAAGCGCATCATTTTTT
66 GG-TTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65207632 AT
130 AT
* *
65207634 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGTCAGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
65207699 GGTTTAAGGCTTGTAAATTCGACTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
66 GG-TTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65207764 AT
130 AT
* * * *
65207766 CTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCAGCCTGCTACCTTACTACTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-G
* * * * **
65207831 GGGTTAAGGCTTGTAAATTTGGCCTGTTACCCTATTGCTTAGGGGGTTAAAGCCCATCATTTTTT
65 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65207896 AT
130 AT
* *
65207898 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAAT-TTCAGCCAGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
65207962 GGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
66 GG-TTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65208027 AT
130 AT
*
65208029 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTTAGCCTGTTACCCTACTGCTTAAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-AG
*
65208094 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65208159 AT
130 AT
* * * *
65208161 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTGCTGCTTAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAG
* * * * * * *
65208223 GGAGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACTGATTA-GGGGTTTAAGACCCTTCGTC
65 GG-GTTAAGGCT-TGTAAATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATC
65208284 TTCGAT
126 TTCGAT
* *
65208290 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGTC-GTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-G
* *
65208354 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTAAAAGCCCATCATCTTCG
65 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65208419 AT
130 AT
* * *
65208421 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTACTGCTTAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAG
* * * * * * * *
65208483 GGAGATAA-G-ATCTACAATTCGG-TCTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTC
65 GG-GTTAAGGCTTGTA-AATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATC
65208544 TTCGAT
126 TTCGAT
*
65208550 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
65208615 GGCTTAAGGCTTGTGAATTC
66 GG-TTAAGGCTTGTAAATTC
65208635 ACTGATTCTA
Statistics
Matches: 886, Mismatches: 86, Indels: 58
0.86 0.08 0.06
Matches are distributed among these distances:
128 23 0.03
129 151 0.17
130 73 0.08
131 224 0.25
132 404 0.46
133 11 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (131 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGA
T
Found at i:65207701 original size:44 final size:44
Alignment explanation
Indices: 65207415--65208622 Score: 703
Period size: 44 Copynumber: 27.6 Consensus size: 44
65207405 AATTTCCAGC
* * ** ** *
65207415 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCAT-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCG-T
* * * * **
65207459 CTATTTCCCAACTGCTTAAGGGGTTAAGATCTGTAAA--TTCAAC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-GT
* * * *
65207502 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTTAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATC-TTCGT
* * *
65207547 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAA--TTCGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAATCTTCGT
* * * * * **
65207589 CTTGTTACCCTACTGCCTAGGGGGTTAA-AGC-GCATCATTTTTTAT
1 C-TGTTACCCTACTGCTTAGGGGGTTAAGATCTG--TAAATCTTCGT
*
65207634 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-GT
* * * *
65207679 CAGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAA--TTCGA
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAATCTTCGT
* ** * *
65207721 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGC-CCATCATCTTTGAT
1 C-TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTA-AATCTTCG-T
* * *
65207766 CTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-GT
* * * * * *
65207811 CTGCTACCTTACTACTTAGGGGGTTAAG-GCTTGTAAAT-TTGGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAATCTTCGT
* * ** * * * **
65207854 CTGTTACCCTATTGCTTAGGGGGTTAA-AGCCCATCATTTTTTAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTGTAAATCTTCGT
* * *
65207898 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAAT-TTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-GT
* * * *
65207942 CAGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAA--TTCGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAATCTTCGT
* ** * *
65207984 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGC-CCATCATCTTTGAT
1 C-TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTA-AATCTTCG-T
* * *
65208029 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTTAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATC-TTCGT
* * *
65208074 CTGTTACCCTACTGCTTAAGGGGTTAAG-GCTTGTAAAT-TT-GG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAATCTTCGT
* ** *
65208116 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGC-CCATCATCTTCGAT
1 C-TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTA-AATCTTCG-T
* *
65208161 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCG-T
* * * * *
65208204 CTGTTTCCCTGCTGCTTAGGGAGATAAGATCTG-CAA--TTCGGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-GT
* * * **
65208246 CTGTTACCCTACTGATTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTGTAAATCTTCG-T
* *
65208290 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-GT
* *
65208335 C-GTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAAT-TT-GG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAATCTTCGT
* * ** *
65208376 CTTGTTACCCTACTGCTTAGGGGG-TAAAAGC-CCATCATCTTCGAT
1 C-TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTA-AATCTTCG-T
* *
65208421 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCG-T
* * *
65208464 CTGTTTCCCTACTGCTTAGGGAGATAAGATC--TACAA--TTCGGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTA-AATCTTC-GT
* * * * **
65208506 CTGTTACCCTACCGATTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTGTAAATCTTCG-T
* *
65208550 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-GT
* *
65208595 CTGTTACCCTATTGCTTAGGGGCTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
65208623 GCTTGTGAAT
Statistics
Matches: 904, Mismatches: 178, Indels: 163
0.73 0.14 0.13
Matches are distributed among these distances:
41 7 0.01
42 74 0.08
43 299 0.33
44 318 0.35
45 195 0.22
46 11 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCGT
Found at i:65207729 original size:175 final size:175
Alignment explanation
Indices: 65207416--65207748 Score: 436
Period size: 175 Copynumber: 1.9 Consensus size: 175
65207406 ATTTCCAGCC
* * *
65207416 TGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
1 TGTTACCCTACTACCTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
* * * **
65207481 GTTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTTAG
66 GTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAATCTCGAG
*
65207546 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCGGCT
131 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTCGGCT
* * * ** * * *
65207591 TGTTACCCTACTGCCTAGGGGGTTAAAGCGCATCATTTTTTATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTACCTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
** * *
65207656 GTTAAGATCTGTAAATCTTCAGTCAGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAAT-TCG
66 GTTAAGATCTGTAAA--TTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAATCTCG
*
65207720 A-CTTGTTACCCTACTGCTTAGGGGGTTAA
129 AGCCTGTTACCCTACTGCTTAGGGGGTTAA
65207749 AGCCCATCAT
Statistics
Matches: 134, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
175 95 0.71
176 2 0.01
177 37 0.28
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (175 bp):
TGTTACCCTACTACCTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
GTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAATCTCGAG
CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTCGGCT
Found at i:65208408 original size:260 final size:265
Alignment explanation
Indices: 65207502--65208633 Score: 1557
Period size: 260 Copynumber: 4.3 Consensus size: 265
65207492 TAAATTCAAC
* * * *
65207502 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTTAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * * * * **
65207567 GGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCCTAGGGGGTTAAAGCGCATCATTTTTT
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
*
65207632 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGTCAGTTACCCTACTGCTTA
131 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATCTTCAGTCAGTTACCCTACTGCTTA
* * *
65207697 GGGGTTTAAGGCTTGTAAATTC-GACTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCT
196 GGGGTATAAGGCTTGTAAATTCGGTCTTGTTACCCTACTGATTAGGGGGTTAAAGCCCATCATCT
*
65207761 TTGAT
261 TCGAT
* * * *
65207766 CTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCAGCCTGCTACCTTACTACTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * * **
65207831 GGGTTAAGGCTTGTAAATTTGGCCTGTTACCCTATTGCTTAGGGGGTTAAAGCCCATCATTTTTT
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
*
65207896 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAAT-TTCAGCCAGTTACCCTACTGCTTA
131 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATCTTCAGTCAGTTACCCTACTGCTTA
* *
65207960 GGGGTTTAAGGCTTGTAAATTCGG-CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCT
196 GGGGTATAAGGCTTGTAAATTCGGTCTTGTTACCCTACTGATTAGGGGGTTAAAGCCCATCATCT
*
65208024 TTGAT
261 TCGAT
* *
65208029 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTTAGCCTGTTACCCTACTGCTTAAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
65208094 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
* * * *
65208159 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTGCTGCTT
131 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATCTTCAG-TCAGTTACCCTACTGCTT
* * * *
65208221 AGGGAG-ATAA-GATCTG-CAATTCGGTC-TGTTACCCTACTGATTA-GGGGTTTAAGACCCTTC
195 AGGG-GTATAAGGCT-TGTAAATTCGGTCTTGTTACCCTACTGATTAGGGGGTTAAAG-CCCATC
*
65208281 GTCTTCGAT
257 ATCTTCGAT
* *
65208290 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGTC-GTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
65208354 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTAAAAGCCCATCATCTTCG
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
* * *
65208419 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTACTGCTT
131 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATCTTCAG-TCAGTTACCCTACTGCTT
* * * * *
65208481 AGGGAG-ATAA-G-ATCTACAATTCGGTC-TGTTACCCTACCGATTA-GGGGTTTAAGACCCTTC
195 AGGG-GTATAAGGCTTGTA-AATTCGGTCTTGTTACCCTACTGATTAGGGGGTTAAAG-CCCATC
*
65208541 GTCTTCGAT
257 ATCTTCGAT
*
65208550 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
65208615 GGCTTAAGGCTTGTGAATT
66 GGGTTAAGGCTTGTAAATT
65208634 CACTGATTCT
Statistics
Matches: 803, Mismatches: 55, Indels: 23
0.91 0.06 0.03
Matches are distributed among these distances:
258 1 0.00
260 257 0.32
261 117 0.15
262 28 0.03
263 244 0.30
264 156 0.19
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (265 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATCTTCAGTCAGTTACCCTACTGCTTA
GGGGTATAAGGCTTGTAAATTCGGTCTTGTTACCCTACTGATTAGGGGGTTAAAGCCCATCATCT
TCGAT
Found at i:65208474 original size:87 final size:87
Alignment explanation
Indices: 65207415--65208576 Score: 599
Period size: 87 Copynumber: 13.3 Consensus size: 87
65207405 AATTTCCAGC
* * * * * * *
65207415 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTACCCTACTGCTTAGGG
** * *
65207480 GGTTAAGATCTGT-AAATTCAAC
66 GGTTAAGATCT-TCATCTTCGAT
* *** * *
65207502 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATC-T-TTAG-CCTGTTACCCTACTGCTT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-A---GCCCATCATCTTCGATCTGTTACCCTACTGCTT
* * * ** *
65207564 AGGGGTTTAAG-GCTTGTAAATTCG-G
62 AGGGGGTTAAGATCTT-CATCTTCGAT
* * * ** *
65207589 CTTGTTACCCTACTGCCTAGGGGGTTAAAGCGCATCATTTTTTATCTGTTTCCCTACTGCTTAGG
1 C-TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTACCCTACTGCTTAGG
*
65207654 GGGTTAAGATCTGTAAATCTTC-AGT
65 GGGTTAAGATCT-T-CATCTTCGA-T
* * * *** **
65207679 CAGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTCGA-CTTGTTACCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC-TGTTACCCTACTGCTTAGG
** * *
65207742 GGGTTAAAGCCCATCATCTTTGAT
65 GGGTT-AAGATCTTCATCTTCGAT
* * * ** * * * * *
65207766 CTGTTTCCCTACTGCTTAGAGGGTT-AAGATCTGTAAATCTTC-AGCCTGCTACCTTACTACTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTACCCTACTGCTTA
* * ** * **
65207829 GGGGGTTAAG-GCTTGTAAATTTGGC
63 GGGGGTTAAGATCTT-CATCTTCGAT
* * ** *
65207854 CTGTTACCCTATTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTACCCTACTGCTTAGGG
* *
65207919 GGTTAAGATCTATAAAT-TTC-AGC
66 GGTTAAGATCT-T-CATCTTCGA-T
* * * *** ** *
65207942 CAGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTCG-GCTTGTTACCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC-TGTTACCCTACTGCTTAGG
** * *
65208005 GGGTTAAAGCCCATCATCTTTGAT
65 GGGTT-AAGATCTTCATCTTCGAT
* * ** * * *
65208029 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTT-TAGCCTGTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTACCCTACTGCTTA
* * * * *
65208092 AGGGGTTAAG-GCTTGTAAAT-TTGGCT
63 GGGGGTTAAGATC-T-T-CATCTTCGAT
*
65208118 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTACCCTACTGCTTAGGG
65208182 GGTTAAGATCTTCATCTTCGAT
66 GGTTAAGATCTTCATCTTCGAT
* * * * ** * * *
65208204 CTGTTTCCCTGCTGCTTAGGGAGAT-AAGATC-TGCA-ATTCGGTCTGTTACCCTACTGATTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTACCCTACTGCTTAGG
* * *
65208266 GGTTTAAGACCCTTCGTCTTCGAT
65 GGGTTAAGA-TCTTCATCTTCGAT
* * * ** *
65208290 CTATTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC-AGTC-GTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTACCCTACTGCTTA
* * * *
65208352 GGGGGTTAAG-GCTTGTAAAT-TTGGCT
63 GGGGGTTAAGATC-T-T-CATCTTCGAT
* *
65208378 -TGTTACCCTACTGCTTAGGGGGTAAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTACCCTACTGCTTAGGG
65208442 GGTTAAGATCTTCATCTTCGAT
66 GGTTAAGATCTTCATCTTCGAT
* * * ** * * * *
65208464 CTGTTTCCCTACTGCTTAGGGAGAT-AAGATC-TACA-ATTCGGTCTGTTACCCTACCGATTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTACCCTACTGCTTAGG
* * *
65208526 GGTTTAAGACCCTTCGTCTTCGAT
65 GGGTTAAGA-TCTTCATCTTCGAT
*
65208550 CTGTTTCCCTACTGCTTAGGGGGTTAA
1 CTGTTACCCTACTGCTTAGGGGGTTAA
65208577 GATCTGTAAA
Statistics
Matches: 816, Mismatches: 196, Indels: 126
0.72 0.17 0.11
Matches are distributed among these distances:
84 4 0.00
85 68 0.08
86 112 0.14
87 294 0.36
88 220 0.27
89 108 0.13
90 6 0.01
91 4 0.00
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (87 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTACCCTACTGCTTAGGG
GGTTAAGATCTTCATCTTCGAT
Found at i:65215208 original size:40 final size:40
Alignment explanation
Indices: 65215149--65215356 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
65215139 CATTTGAATG
* *
65215149 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
65215189 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
65215229 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
65215269 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * *
65215309 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
65215349 ATATCCGG
1 ATATCCGG
65215357 CTAAATTCCG
Statistics
Matches: 150, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
39 2 0.01
40 145 0.97
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:65223329 original size:27 final size:27
Alignment explanation
Indices: 65223295--65223472 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
65223285 TAAATTGTAC
*
65223295 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
65223322 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
65223348 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
65223376 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
65223403 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
65223431 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
65223458 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65223473 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:65223356 original size:54 final size:55
Alignment explanation
Indices: 65223295--65223472 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
65223285 TAAATTGTAC
* **
65223295 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
65223350 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
65223403 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
65223458 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65223473 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:65239233 original size:19 final size:20
Alignment explanation
Indices: 65239211--65239251 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
65239201 TATTTTAATT
65239211 TTTTATA-AAT-TCTGAAAAA
1 TTTTATATAATCTCT-AAAAA
65239230 TTTTATATAATCTCTAAAAA
1 TTTTATATAATCTCTAAAAA
65239250 TT
1 TT
65239252 AATTAAGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 10 0.50
21 3 0.15
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (20 bp):
TTTTATATAATCTCTAAAAA
Found at i:65242926 original size:26 final size:26
Alignment explanation
Indices: 65242897--65243004 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
65242887 TGGTACAGAT
65242897 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
65242923 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65242949 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
65242975 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65243001 TGAT
1 TGAT
65243005 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65250004 original size:26 final size:26
Alignment explanation
Indices: 65249975--65250082 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
65249965 TGGTACAAAT
65249975 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
65250001 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65250027 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
65250053 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65250079 TGAT
1 TGAT
65250083 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65250676 original size:20 final size:23
Alignment explanation
Indices: 65250634--65250680 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
65250624 GTTTTTGGTT
65250634 TTTTGGAGAAGGATTGTTCTTTG
1 TTTTGGAGAAGGATTGTTCTTTG
*
65250657 TTTTGGAGGAGG-TT-TT-TTTG
1 TTTTGGAGAAGGATTGTTCTTTG
65250677 TTTT
1 TTTT
65250681 TTGGAGTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 2 0.09
22 2 0.09
23 11 0.48
ACGTcount: A:0.13, C:0.02, G:0.30, T:0.55
Consensus pattern (23 bp):
TTTTGGAGAAGGATTGTTCTTTG
Found at i:65250685 original size:22 final size:22
Alignment explanation
Indices: 65250606--65250703 Score: 69
Period size: 22 Copynumber: 4.5 Consensus size: 22
65250596 CATTCAAGAC
* * * *
65250606 TTTGTTTTTAGGGGGTGGGTTT
1 TTTGTTTTTTGGAGGAGGTTTT
* *
65250628 TTGGTTTTTTGGAGAAGGATTGTT
1 TTTGTTTTTTGGAGGAGG-TT-TT
65250652 CTTTG--TTTTGGAGGAGGTTTT
1 -TTTGTTTTTTGGAGGAGGTTTT
*
65250673 TTTGTTTTTTGGAGTTA--TTTT
1 TTTGTTTTTTGGAG-GAGGTTTT
65250694 TTTGTTTTTT
1 TTTGTTTTTT
65250704 TGAAAAGAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
20 4 0.07
21 16 0.26
22 23 0.38
23 13 0.21
24 2 0.03
25 3 0.05
ACGTcount: A:0.09, C:0.01, G:0.30, T:0.60
Consensus pattern (22 bp):
TTTGTTTTTTGGAGGAGGTTTT
Found at i:65251038 original size:3 final size:3
Alignment explanation
Indices: 65251024--65251112 Score: 71
Period size: 3 Copynumber: 29.3 Consensus size: 3
65251014 GAGCTTTGTT
* *
65251024 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
65251068 TTA TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA
1 TTA TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
65251112 T
1 T
65251113 ATATGCCCTC
Statistics
Matches: 71, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
2 7 0.10
3 55 0.77
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:65251068 original size:30 final size:30
Alignment explanation
Indices: 65251024--65251116 Score: 102
Period size: 30 Copynumber: 3.0 Consensus size: 30
65251014 GAGCTTTGTT
*
65251024 TTATTATTTTATTATTTTTACTATTATTTA
1 TTATTATTTTATTATTTTTACTATTATATA
65251054 -TATTATTATTATTATTATTT-CTCATGTATATA
1 TTATTATT-TTATTATT-TTTACT-AT-TATATA
*
65251086 TTATTATTTATATTATTATTA-TATTATATA
1 TTATTATTT-TATTATTTTTACTATTATATA
65251116 T
1 T
65251117 GCCCTCTCCA
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
29 7 0.13
30 17 0.31
31 7 0.13
32 9 0.17
33 14 0.26
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (30 bp):
TTATTATTTTATTATTTTTACTATTATATA
Found at i:65254083 original size:40 final size:40
Alignment explanation
Indices: 65254022--65254268 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
65254012 CGGAATTTAG
* * * *
65254022 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
65254062 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
65254102 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
65254142 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
65254182 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
65254222 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
65254262 CCGGATA
1 CCGGATA
65254269 TCATTCAAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 182 0.97
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:65261507 original size:27 final size:27
Alignment explanation
Indices: 65261477--65261654 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
65261467 ATATTAAGTC
* *
65261477 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
65261504 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
65261532 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
65261559 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
65261586 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
65261613 CGCACACTTACTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
65261640 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65261655 GTAAAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 103 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:65261561 original size:55 final size:54
Alignment explanation
Indices: 65261477--65261654 Score: 223
Period size: 54 Copynumber: 3.3 Consensus size: 54
65261467 ATATTAAGTC
* * *
65261477 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
65261532 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** * *
65261586 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTACTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
65261640 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65261655 GTAAAATTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 59 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:65261645 original size:81 final size:82
Alignment explanation
Indices: 65261498--65261653 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 82
65261488 TGCTATATAA
* * *
65261498 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTACTGCAACATAGTCAAATCGCA
65261563 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
65261580 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTACTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTACTGCAACATAGTCAAATCGC
65261643 ACACTTAGTGC
65 ACACTTAGTGC
65261654 TGTAAAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 42 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTACTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Done.