Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 210 of 325
Found at i:65264991 original size:33 final size:34
Alignment explanation
Indices: 65264938--65265003 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
65264928 CCACACTATC
* *
65264938 ACTGTATAGGGCTAAGGCCCAGACTG-TACTGTT
1 ACTGAATAGGGCTAAGGCCCAGACCGTTACTGTT
65264971 ACTGAATAGGGCTCAA-GCCCAGACCGTTACTGT
1 ACTGAATAGGGCT-AAGGCCCAGACCGTTACTGT
65265004 ATGCACTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 21 0.72
34 8 0.28
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (34 bp):
ACTGAATAGGGCTAAGGCCCAGACCGTTACTGTT
Found at i:65265890 original size:13 final size:13
Alignment explanation
Indices: 65265868--65265900 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
65265858 AAGGGTTTGT
65265868 TTAT-TAAACTAA
1 TTATCTAAACTAA
65265880 TTATCTAAACTAA
1 TTATCTAAACTAA
*
65265893 TTAACTAA
1 TTATCTAA
65265901 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:65268227 original size:26 final size:26
Alignment explanation
Indices: 65268196--65268270 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
65268186 TTTGCCACAT
* *
65268196 ATACTGTTATTAGCAGCTTTGTTGTG
1 ATACTGTTATTAGCAGCTTTGCTATG
* *
65268222 ATACTGTTACTAGTC-GTTTTGCTATG
1 ATACTGTTATTAG-CAGCTTTGCTATG
* *
65268248 ATACTGTTATTGGCAGCCTTGCT
1 ATACTGTTATTAGCAGCTTTGCT
65268271 GCAATATTGA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
25 1 0.03
26 37 0.95
27 1 0.03
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (26 bp):
ATACTGTTATTAGCAGCTTTGCTATG
Found at i:65268430 original size:33 final size:33
Alignment explanation
Indices: 65268375--65268438 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
65268365 CATTATTGTA
* *
65268375 CTGTATTGATACTGTATTGGGCTAAGGCCCACT
1 CTGTATTGATACTGAATAGGGCTAAGGCCCACT
* * *
65268408 CTGTATTGTTTCTGAATAGGGCTCAGGCCCA
1 CTGTATTGATACTGAATAGGGCTAAGGCCCA
65268439 GACTGTCACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (33 bp):
CTGTATTGATACTGAATAGGGCTAAGGCCCACT
Found at i:65271439 original size:44 final size:41
Alignment explanation
Indices: 65271373--65271513 Score: 131
Period size: 42 Copynumber: 3.3 Consensus size: 41
65271363 GGAACGTTGA
* *
65271373 CATCGATCTGAGATATCGTGTAAGACCGTGTCTGGGACACAGG
1 CATCGATCT--GATTTCGTGTAAGACCATGTCTGGGACACAGG
* * *
65271416 CCTCGATTTGAAATTTACGTGTAAGACCATGTCTGAGACATC-GG
1 CATCGATCTG--ATTT-CGTGTAAGACCATGTCTGGGACA-CAGG
* * *
65271460 CATCGTATCTGATTTCGTATAAGACCCTGTCTGGGACAGAGG
1 CATCG-ATCTGATTTCGTGTAAGACCATGTCTGGGACACAGG
65271502 CATCGATACTGA
1 CATCGAT-CTGA
65271514 ATTACATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
41 3 0.04
42 31 0.39
43 14 0.17
44 27 0.34
45 5 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (41 bp):
CATCGATCTGATTTCGTGTAAGACCATGTCTGGGACACAGG
Found at i:65271491 original size:42 final size:43
Alignment explanation
Indices: 65271373--65271529 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
65271363 GGAACGTTGA
* * * * *
65271373 CATCGAT-CTGAGATATCGTGTAAGACCGTGTCTGGGACACAGG
1 CATCGATACTGA-ATTTCGTATAAGACCATGTCTGAGACAGAGG
* * * **
65271416 CCTCGAT-TTGAAATTTACGTGTAAGACCATGTCTGAGACATCGG
1 CATCGATACTG-AATTT-CGTATAAGACCATGTCTGAGACAGAGG
* *
65271460 CATCG-TATCTG-ATTTCGTATAAGACCCTGTCTGGGACAGAGG
1 CATCGATA-CTGAATTTCGTATAAGACCATGTCTGAGACAGAGG
* *
65271502 CATCGATACTGAATTACATATAAGACCA
1 CATCGATACTGAATTTCGTATAAGACCA
65271530 CGTCCGGGAC
Statistics
Matches: 91, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
42 30 0.33
43 31 0.34
44 28 0.31
45 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (43 bp):
CATCGATACTGAATTTCGTATAAGACCATGTCTGAGACAGAGG
Found at i:65278690 original size:27 final size:24
Alignment explanation
Indices: 65278645--65278693 Score: 62
Period size: 27 Copynumber: 1.9 Consensus size: 24
65278635 ACGACAAAAT
*
65278645 TAAATCACAAAAATTTCACAGATA
1 TAAATCACAAAAATATCACAGATA
65278669 TAAATTCACACAAAATAATCACAGA
1 TAAA-TCACA-AAAAT-ATCACAGA
65278694 AAATAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 5 0.24
26 5 0.24
27 7 0.33
ACGTcount: A:0.55, C:0.18, G:0.04, T:0.22
Consensus pattern (24 bp):
TAAATCACAAAAATATCACAGATA
Found at i:65281603 original size:27 final size:26
Alignment explanation
Indices: 65281573--65281663 Score: 101
Period size: 26 Copynumber: 3.5 Consensus size: 26
65281563 ATACTATTTT
* *
65281573 TGGTGGCTTTGCCACATATACTGTTAC
1 TGGTAGCTTTGCCAC-GATACTGTTAC
*
65281600 TGGTAGCTTTGCTACGATACTGTTAC
1 TGGTAGCTTTGCCACGATACTGTTAC
* * * *
65281626 TGGAAGCTTTTCTATGATACTGTTAC
1 TGGTAGCTTTGCCACGATACTGTTAC
*
65281652 TGGTAGCGTTGC
1 TGGTAGCTTTGC
65281664 TATGATATTG
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
26 42 0.76
27 13 0.24
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (26 bp):
TGGTAGCTTTGCCACGATACTGTTAC
Found at i:65281626 original size:26 final size:26
Alignment explanation
Indices: 65281590--65281670 Score: 126
Period size: 26 Copynumber: 3.1 Consensus size: 26
65281580 TTTGCCACAT
*
65281590 ATACTGTTACTGGTAGCTTTGCTACG
1 ATACTGTTACTGGTAGCTTTGCTATG
* *
65281616 ATACTGTTACTGGAAGCTTTTCTATG
1 ATACTGTTACTGGTAGCTTTGCTATG
*
65281642 ATACTGTTACTGGTAGCGTTGCTATG
1 ATACTGTTACTGGTAGCTTTGCTATG
65281668 ATA
1 ATA
65281671 TTGGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (26 bp):
ATACTGTTACTGGTAGCTTTGCTATG
Found at i:65284148 original size:39 final size:40
Alignment explanation
Indices: 65284103--65284270 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
65284093 CGGGGTTTAG
* * *
65284103 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
65284142 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
65284182 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
65284222 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
65284263 CCGGATAT
1 CCGGATAT
65284271 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:65284253 original size:41 final size:40
Alignment explanation
Indices: 65284126--65284270 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
65284116 CTCGCACAAG
* * * * *
65284126 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
65284166 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
65284206 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
65284247 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
65284271 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:65286041 original size:39 final size:40
Alignment explanation
Indices: 65285996--65286163 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
65285986 CGGGGTTTAG
* * *
65285996 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
65286035 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
65286075 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
65286115 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
65286156 CCGGATAT
1 CCGGATAT
65286164 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:65286146 original size:41 final size:40
Alignment explanation
Indices: 65286019--65286163 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
65286009 CTCGCACAAG
* * * * *
65286019 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
65286059 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
65286099 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
65286140 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
65286164 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:65305103 original size:37 final size:37
Alignment explanation
Indices: 65305053--65305131 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65305043 TTATTACGAA
* * *
65305053 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
65305090 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
65305127 GTCTT
1 GTCTT
65305132 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:65305458 original size:47 final size:47
Alignment explanation
Indices: 65305249--65305714 Score: 842
Period size: 47 Copynumber: 9.7 Consensus size: 47
65305239 GCCCTTCGGG
*
65305249 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
65305299 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
65305348 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
65305397 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65305444 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65305491 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65305538 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
65305585 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65305632 ACTTTCACATTCATCACATCGGCCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCC-ATTAGGCCTTATCACATATATAC
65305680 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
65305715 CTATCATTTC
Statistics
Matches: 412, Mismatches: 3, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
47 230 0.56
48 46 0.11
49 132 0.32
50 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:65309154 original size:40 final size:40
Alignment explanation
Indices: 65309109--65309421 Score: 295
Period size: 40 Copynumber: 7.9 Consensus size: 40
65309099 CCGAATAACG
* * *
65309109 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
65309149 ACACCAG-ACGAATGCTCATT--GG--TTAGCAGCGGATATA
1 TCACTAGCATGAATGCTC-TTCGGGACTTAGC-CCGGATATA
* * *
65309186 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
65309226 TCACTAGCACGGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCA-TGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
65309267 TCACTAGCATG-ATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
65309306 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** * *
65309346 GTAACTCGCACCAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCACTAGCATGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
65309387 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
65309422 CATCATTCGA
Statistics
Matches: 229, Mismatches: 30, Indels: 28
0.80 0.10 0.10
Matches are distributed among these distances:
36 4 0.02
37 15 0.07
38 12 0.05
39 49 0.21
40 88 0.38
41 61 0.27
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:65309765 original size:29 final size:29
Alignment explanation
Indices: 65309726--65309804 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
65309716 CTTAATAATC
*
65309726 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
65309756 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
65309785 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
65309805 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:65309847 original size:43 final size:43
Alignment explanation
Indices: 65309786--65309888 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
65309776 TGCATTTCAA
65309786 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
65309829 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
65309872 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
65309889 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:65311790 original size:37 final size:37
Alignment explanation
Indices: 65311740--65311818 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65311730 TTATTACGAA
* * *
65311740 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
65311777 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
65311814 GTCTT
1 GTCTT
65311819 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:65312135 original size:47 final size:47
Alignment explanation
Indices: 65311936--65312392 Score: 839
Period size: 47 Copynumber: 9.7 Consensus size: 47
65311926 GCCCTTCGGG
*
65311936 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
65311986 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
65312034 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65312080 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65312127 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65312174 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65312221 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65312268 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65312315 ACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65312361 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
65312393 ATACTATCAT
Statistics
Matches: 405, Mismatches: 0, Indels: 7
0.98 0.00 0.02
Matches are distributed among these distances:
46 86 0.21
47 233 0.58
48 54 0.13
49 28 0.07
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:65318654 original size:43 final size:43
Alignment explanation
Indices: 65318606--65318770 Score: 203
Period size: 43 Copynumber: 3.9 Consensus size: 43
65318596 ACCGAGATGG
* *
65318606 GATTACATGTAAGAACATGTCTAGGACATTGGCATTG-TACTAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTTA-TAT
65318649 GATTACATGTAAGACCATGTCTGGGACATTGGCA-TGTTATAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTTATAT
* * *
65318691 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATTGATATGA-
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTTAT-AT
* * * *
65318734 GATAACATGTAAGACTATATCTGGGATA-TGGCATTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
65318771 ATGAGCTTTA
Statistics
Matches: 107, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
42 45 0.42
43 61 0.57
44 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTTATAT
Found at i:65318757 original size:85 final size:84
Alignment explanation
Indices: 65318613--65318767 Score: 215
Period size: 85 Copynumber: 1.8 Consensus size: 84
65318603 TGGGATTACA
* *
65318613 TGTAAGAACATGTCTAGGACATTGGCATTGTACTATGATTACATGTAAGACCATGTCTGGGACAT
1 TGTAAGAACATGTCTAGGACATTGGCATTGTACTATGATAACATGTAAGACCATATCTGGGACA-
65318678 TGGCATGTTATATGATTTCG
65 TGGCATGTTATATGATTTCG
* * * *
65318698 TGTAAGACCATGTCTGGGACATTGGCATTG-A-TATGAGATAACATGTAAGACTATATCTGGGAT
1 TGTAAGAACATGTCTAGGACATTGGCATTGTACTAT--GATAACATGTAAGACCATATCTGGGAC
65318761 ATGGCAT
64 ATGGCAT
65318768 TGTATGAGCT
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
83 3 0.05
84 7 0.11
85 52 0.84
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (84 bp):
TGTAAGAACATGTCTAGGACATTGGCATTGTACTATGATAACATGTAAGACCATATCTGGGACAT
GGCATGTTATATGATTTCG
Found at i:65328200 original size:38 final size:38
Alignment explanation
Indices: 65328135--65328247 Score: 136
Period size: 38 Copynumber: 2.9 Consensus size: 38
65328125 ATTTGATGTG
*
65328135 TATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCTGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
* **
65328175 TATCTGGGTTAAATCCCGCATGCTTCGTGCTGGTATTA
1 TATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * *
65328213 TATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTA
1 TATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
65328248 TTATATTTGG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 51 0.80
39 5 0.08
40 8 0.12
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (38 bp):
TATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:65328248 original size:38 final size:38
Alignment explanation
Indices: 65328151--65328253 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
65328141 GGCTTAAAGA
** * *
65328151 CCCGCAGGCTTCGTGCTGGTAAAATATCTGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
*
65328189 CCCGCATGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* *
65328227 CCCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
65328254 TTGGGCCTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:65328328 original size:43 final size:43
Alignment explanation
Indices: 65328251--65328332 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
65328241 GCTGGTATTA
* * * **
65328251 TATTTGGGCCTTCATGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGATGTG
*
65328294 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGA
65328333 AATGATATGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:65331091 original size:21 final size:21
Alignment explanation
Indices: 65331065--65331135 Score: 108
Period size: 21 Copynumber: 3.4 Consensus size: 21
65331055 TATAATGAGT
* **
65331065 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATGTC
65331086 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATGTC
65331107 ATATCATGT-CATATCATGTC
1 ATATCATGTGCATATCATGTC
65331127 ATATCATGT
1 ATATCATGT
65331136 ATATCAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 20 0.43
21 27 0.57
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATGTGCATATCATGTC
Found at i:65331109 original size:10 final size:10
Alignment explanation
Indices: 65331065--65331141 Score: 102
Period size: 10 Copynumber: 7.6 Consensus size: 10
65331055 TATAATGAGT
65331065 ATATCATGTGC
1 ATATCATGT-C
* **
65331076 ATCTCATAAC
1 ATATCATGTC
65331086 ATATCATGTGC
1 ATATCATGT-C
65331097 ATATCATGTC
1 ATATCATGTC
65331107 ATATCATGTC
1 ATATCATGTC
65331117 ATATCATGTC
1 ATATCATGTC
65331127 ATATCATGT-
1 ATATCATGTC
65331136 ATATCA
1 ATATCA
65331142 AAATCTCATG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
9 6 0.10
10 37 0.63
11 16 0.27
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.38
Consensus pattern (10 bp):
ATATCATGTC
Found at i:65331113 original size:5 final size:5
Alignment explanation
Indices: 65331065--65331133 Score: 57
Period size: 5 Copynumber: 13.4 Consensus size: 5
65331055 TATAATGAGT
* * * * * *
65331065 ATATC ATGTGC ATCTC ATAAC ATATC ATGTGC ATATC ATGTC ATATC ATGTC
1 ATATC ATAT-C ATATC ATATC ATATC ATAT-C ATATC ATATC ATATC ATATC
*
65331117 ATATC ATGTC ATATC AT
1 ATATC ATATC ATATC AT
65331134 GTATATCAAA
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
5 41 0.84
6 8 0.16
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (5 bp):
ATATC
Found at i:65333018 original size:20 final size:20
Alignment explanation
Indices: 65332995--65333033 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65332985 CACAACCAAA
*
65332995 TACCAAATTTTTAAAAATTT
1 TACCAAATTCTTAAAAATTT
*
65333015 TACCAAATTCTTGAAAATT
1 TACCAAATTCTTAAAAATT
65333034 ACAAAAATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (20 bp):
TACCAAATTCTTAAAAATTT
Found at i:65339087 original size:21 final size:21
Alignment explanation
Indices: 65339062--65339120 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 21
65339052 TATAATGAGT
*
65339062 ATATCAAGTGCATCTCATAAC
1 ATATCAAGTGCATATCATAAC
* **
65339083 ATATCATGTGCATATCATGTC
1 ATATCAAGTGCATATCATAAC
*
65339104 ATATCATGT-CATATCAT
1 ATATCAAGTGCATATCAT
65339121 GTATATCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 8 0.24
21 26 0.76
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (21 bp):
ATATCAAGTGCATATCATAAC
Found at i:65339106 original size:10 final size:10
Alignment explanation
Indices: 65339082--65339128 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
65339072 CATCTCATAA
65339082 CATATCATGT
1 CATATCATGT
65339092 GCATATCATGT
1 -CATATCATGT
65339103 CATATCATGT
1 CATATCATGT
65339113 CATATCATGT
1 CATATCATGT
65339123 -ATATCA
1 CATATCA
65339129 AAATCTCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:65341015 original size:20 final size:20
Alignment explanation
Indices: 65340980--65341017 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65340970 CACAACCAAA
* *
65340980 TACCAAATTTTTAAAAATGT
1 TACCAAATTCTCAAAAATGT
65341000 TACCAAATTCTCAAAAAT
1 TACCAAATTCTCAAAAAT
65341018 TACGAAAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (20 bp):
TACCAAATTCTCAAAAATGT
Found at i:65341992 original size:55 final size:55
Alignment explanation
Indices: 65341879--65342004 Score: 139
Period size: 55 Copynumber: 2.3 Consensus size: 55
65341869 CGACATTACT
* * * * *
65341879 GTGGTTGAGCCTGCTAAAACAACACGGGCGTGCGACACGCCCGTGTGGAAAAACC
1 GTGGGTGAACCTGTTAAAACAACACGGGAGTGCGACACGCCCGTGTGCAAAAACC
* * * *
65341934 GTGGGTGAACCTGTTAAAACAACACGGGAGTGTGACATGCCCGTGT-CTAACACTC
1 GTGGGTGAACCTGTTAAAACAACACGGGAGTGCGACACGCCCGTGTGCAAAAAC-C
65341989 GT-GGTCGAACCTGTTA
1 GTGGGT-GAACCTGTTA
65342005 GATTGACACG
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
54 7 0.12
55 53 0.88
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (55 bp):
GTGGGTGAACCTGTTAAAACAACACGGGAGTGCGACACGCCCGTGTGCAAAAACC
Found at i:65347112 original size:21 final size:21
Alignment explanation
Indices: 65347071--65347112 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
65347061 AAGAAAGGAA
* **
65347071 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
65347092 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
65347113 GGTTATCACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:65348755 original size:40 final size:40
Alignment explanation
Indices: 65348700--65348837 Score: 224
Period size: 40 Copynumber: 3.5 Consensus size: 40
65348690 TGGATGATAA
65348700 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65348740 CCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65348780 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
65348820 -CTGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65348838 TACTTGGCTT
Statistics
Matches: 91, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 14 0.15
40 77 0.85
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:65365451 original size:49 final size:49
Alignment explanation
Indices: 65365385--65365845 Score: 708
Period size: 49 Copynumber: 9.6 Consensus size: 49
65365375 AGTATATGTG
*
65365385 GAATGTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
65365434 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCAATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
65365481 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
65365530 GAATGTGAAAGTG--TATATATGTGATAAGGTCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
65365577 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
65365626 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
65365675 GAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
65365722 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
65365771 GAATGTG-AAG-GTGTATATATGTGATAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
65365818 GGACGTGAAAGTGTATA-A-ATGTGATAAG
1 GAATGTGAAAGTGTATATATATGTGATAAG
65365846 TCCCGAAGGG
Statistics
Matches: 379, Mismatches: 25, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
47 179 0.47
48 7 0.02
49 193 0.51
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:65365498 original size:96 final size:96
Alignment explanation
Indices: 65365385--65365845 Score: 705
Period size: 96 Copynumber: 4.8 Consensus size: 96
65365375 AGTATATGTG
*
65365385 GAATGTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
65365450 ATATGTGATAAGGCCTAATAGCCAATGTGAT
66 ATATGTGATAAGGCCTAATGGCCAATGTGAT
65365481 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
65365546 ATATGTGATAAGGTCGAATGGCCAATGTGAT
66 ATATGTGATAAGGCCTAATGGCCAATGTGAT
65365577 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
65365642 ATATATGTGATAAGGCCTAATGGCCGATGTGAT
64 ATATATGTGATAAGGCCTAATGGCCAATGTGAT
* *
65365675 GAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
65365738 ATATATGTGATAAGGCCTAATGGCCGATGTGAT
64 ATATATGTGATAAGGCCTAATGGCCAATGTGAT
* * * * * * * *
65365771 GAATGTG-AAG-GTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGACGTGAAAGTGTAT
1 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
65365834 AAATGTGATAAG
66 ATATGTGATAAG
65365846 TCCCGAAGGG
Statistics
Matches: 346, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
94 15 0.04
95 3 0.01
96 284 0.82
98 44 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCAATGTGAT
Found at i:65365549 original size:145 final size:144
Alignment explanation
Indices: 65365385--65365845 Score: 730
Period size: 145 Copynumber: 3.2 Consensus size: 144
65365375 AGTATATGTG
* * *
65365385 GAATGTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TA
1 GAATGTGAAAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATA
* *
65365449 TATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
65365514 TAATGGCCGATGTGAT
129 TAATGGCCGATGTGAT
*
65365530 GAATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATAT
65365595 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
65365660 AATGGCCGATGTGAT
130 AATGGCCGATGTGAT
65365675 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATAT
* * *
65365740 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTGATAGGGCCG
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
* * *
65365803 AGTGGCCAACGTGAT
130 AATGGCCGATGTGAT
* * *
65365818 GGACGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
65365846 TCCCGAAGGG
Statistics
Matches: 298, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
143 101 0.34
144 3 0.01
145 194 0.65
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (144 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
ATGGCCGATGTGAT
Found at i:65368971 original size:13 final size:13
Alignment explanation
Indices: 65368950--65368989 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
65368940 AAAGTAATTG
*
65368950 CACAAGGGCGTGT
1 CACACGGGCGTGT
65368963 CACACGGGCGTGT
1 CACACGGGCGTGT
65368976 CACACGGGCGTGT
1 CACACGGGCGTGT
65368989 C
1 C
65368990 CCTGCCGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.17, C:0.30, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:65372050 original size:51 final size:50
Alignment explanation
Indices: 65371985--65372174 Score: 208
Period size: 50 Copynumber: 3.8 Consensus size: 50
65371975 TGTTAAGTCG
* *
65371985 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-ATGACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTA-TCAGATGA-TTCGGTCA
* **
65372036 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGATTCGGTCA
* * * * *
65372086 CATGTGTAGTACTAAGTGTAGGATACTACGTGTA-CTGGATTG-TT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTATC-AGA-TGATTCGGTCA
* *
65372135 CATGTGTAGTACTAAGTGCACGCTACTATGCGTATCAGAT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGAT
65372175 AACTTCGGCT
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
48 1 0.01
49 36 0.30
50 44 0.37
51 38 0.32
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGATTCGGTCA
Found at i:65381231 original size:153 final size:153
Alignment explanation
Indices: 65380953--65381259 Score: 587
Period size: 153 Copynumber: 2.0 Consensus size: 153
65380943 TTTCTTAGAA
*
65380953 GGCGTTAGGGGTAGCCGACTAACAAAGTCCTAGTTACTCTCTCCCACTTCCAAAGTAGAATCTTA
1 GGCGTTAGGGGTAGCCCACTAACAAAGTCCTAGTTACTCTCTCCCACTTCCAAAGTAGAATCTTA
*
65381018 ACTGGCTGAAGCAACCCTGAAGGAAACTGTTGCTCAGCCTTAACCTGCTGACAAGTAAGGCATTT
66 ACTGGCTGAAGCAACCCTGAAGGAAACTGTTGCTCAGCCTTAACCTGCTAACAAGTAAGGCATTT
65381083 ACCTACGAAGTCGGTAACTTCAT
131 ACCTACGAAGTCGGTAACTTCAT
65381106 GGCGTTAGGGGTAGCCCACTAACAAAGTCCTAGTTACTCTCTCCCACTTCCAAAGTAGAATCTTA
1 GGCGTTAGGGGTAGCCCACTAACAAAGTCCTAGTTACTCTCTCCCACTTCCAAAGTAGAATCTTA
*
65381171 ACTGGCTGAAGTAACCCTGAAGGAAACTGTTGCTCAGCCTTAACCTGCTAACAAGTAAGGCATTT
66 ACTGGCTGAAGCAACCCTGAAGGAAACTGTTGCTCAGCCTTAACCTGCTAACAAGTAAGGCATTT
65381236 ACCTACGAAGTCGGTAACTTCAT
131 ACCTACGAAGTCGGTAACTTCAT
65381259 G
1 G
65381260 CTTAAGACCT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
153 151 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (153 bp):
GGCGTTAGGGGTAGCCCACTAACAAAGTCCTAGTTACTCTCTCCCACTTCCAAAGTAGAATCTTA
ACTGGCTGAAGCAACCCTGAAGGAAACTGTTGCTCAGCCTTAACCTGCTAACAAGTAAGGCATTT
ACCTACGAAGTCGGTAACTTCAT
Found at i:65384510 original size:40 final size:40
Alignment explanation
Indices: 65384429--65384610 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 40
65384419 AATGATGTCT
* * *
65384429 GGGCTAAGTCCCGAAGGC-TTTGTGCTTAGTGACT-ATATCC
1 GGGCTAAGGCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
* ***
65384469 GGACTAAGATTCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * * *
65384509 GGGCT-AGGCCCGAAGGCATTGGTGCGAATCACTAAATCC
1 GGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
65384548 GGGTTAAGGCCCGAAGGCATTTGTGAGAGTTACT-ATAACC
1 GGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
* *
65384588 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGGCCCGAAGGCATTTG
65384611 AACGAGTAGC
Statistics
Matches: 114, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
39 32 0.28
40 73 0.64
41 9 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:65384641 original size:79 final size:78
Alignment explanation
Indices: 65384460--65384643 Score: 185
Period size: 79 Copynumber: 2.3 Consensus size: 78
65384450 GTGCTTAGTG
* * *
65384460 ACTATATCCGGACTAAGATT-CGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAGGCCCGAAG
1 ACTATATCCGG-TTAA-ATTCCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAGGCCCGAAG
**
65384524 GCATTGGTGCGAATC
64 GCATTGGAACGAATC
* *** *
65384539 ACTAAATCCGGGTTAAGGCCCGAAGGCATTTGTGAGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAATTCCGAAGGCATTTGTGAGAGTTACTAAT-ACCGGGCTA-GGCCCGAA
* *
65384603 GGCATTTGAACGAGT-
63 GGCATTGGAACGAATC
65384618 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTTAAATTCCGAAGG
65384644 TACGTGATTC
Statistics
Matches: 84, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
78 2 0.02
79 55 0.65
80 27 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
ACTATATCCGGTTAAATTCCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAGGCCCGAAGGC
ATTGGAACGAATC
Found at i:65390596 original size:29 final size:27
Alignment explanation
Indices: 65390578--65390647 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
65390568 ATATTAAGTC
65390578 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
65390605 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
65390633 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
65390648 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:65390641 original size:28 final size:28
Alignment explanation
Indices: 65390578--65390675 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
65390568 ATATTAAGTC
*
65390578 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
65390605 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
65390633 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
65390662 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65390676 AAATCTGATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65415679 original size:46 final size:46
Alignment explanation
Indices: 65415629--65415757 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
65415619 TGGTTGAGCA
* *
65415629 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
65415675 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
65415721 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65415758 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:65417345 original size:24 final size:24
Alignment explanation
Indices: 65417318--65417365 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
65417308 TTTCGCACAC
*
65417318 TTAGTGCCATCTCAAATAACCGAG
1 TTAGTACCATCTCAAATAACCGAG
*
65417342 TTAGTACCATCTCAAATAATCGAG
1 TTAGTACCATCTCAAATAACCGAG
65417366 ACTAAGTCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (24 bp):
TTAGTACCATCTCAAATAACCGAG
Found at i:65429087 original size:15 final size:15
Alignment explanation
Indices: 65429055--65429083 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65429045 ATATTCTGTG
65429055 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
65429070 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
65429084 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:65429617 original size:15 final size:15
Alignment explanation
Indices: 65429597--65429627 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
65429587 AAATATGAAA
65429597 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
65429612 GATATGTTTTGTATT
1 GATATGTTTTGGATT
65429627 G
1 G
65429628 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:65430071 original size:45 final size:45
Alignment explanation
Indices: 65430009--65430185 Score: 198
Period size: 45 Copynumber: 4.0 Consensus size: 45
65429999 TAGGATTCTG
* *
65430009 ATATGTGTTTTCGTGTAAGATCACAT-TTGGAGCATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACATCTGGGA-CATTGGCATCGAT
* * *
65430054 ATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACATCTGGGACATTGGCATCGAT
* * * *
65430099 ATATGTGTTTTCGTGTAAGACTACGTCTAGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACATCTGGGACATTGGCATCGAT
* * **
65430144 ATATATGGTTAT-GTGTAAGACCATGTCTGGGA-ATTGGCATCG
1 ATATGT-GTTTTCGTGTAAGACCACATCTGGGACATTGGCATCG
65430186 TATTTGATTC
Statistics
Matches: 116, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
44 9 0.08
45 99 0.85
46 8 0.07
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.35
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACATCTGGGACATTGGCATCGAT
Found at i:65430162 original size:90 final size:89
Alignment explanation
Indices: 65430009--65430185 Score: 225
Period size: 90 Copynumber: 2.0 Consensus size: 89
65429999 TAGGATTCTG
* * *
65430009 ATATGTGTTTTCGTGTAAGATCACATTTGGAGCATTGGCATCGATATATGTGTTTTCATGTAAGA
1 ATATGTGTTTTCGTGTAAGATCACATTAGGAGCATTGGCATCGATATATATGTTATCATGTAAGA
*
65430074 CCACGTCTGGGACGTTGGCATCGAT
66 CCACGTCTGGGA-ATTGGCATCGAT
* * *
65430099 ATATGTGTTTTCGTGTAAGA-CTACGTCTAGGA-CGTTGGCATCGATATATATGGTTAT-GTGTA
1 ATATGTGTTTTCGTGTAAGATC-ACAT-TAGGAGCATTGGCATCGATATATAT-GTTATCATGTA
*
65430161 AGACCATGTCTGGGAATTGGCATCG
63 AGACCACGTCTGGGAATTGGCATCG
65430186 TATTTGATTC
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
89 10 0.13
90 58 0.76
91 8 0.11
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.35
Consensus pattern (89 bp):
ATATGTGTTTTCGTGTAAGATCACATTAGGAGCATTGGCATCGATATATATGTTATCATGTAAGA
CCACGTCTGGGAATTGGCATCGAT
Found at i:65443673 original size:47 final size:47
Alignment explanation
Indices: 65443595--65444188 Score: 972
Period size: 47 Copynumber: 12.6 Consensus size: 47
65443585 CCCTTCGGGA
* * * * * *
65443595 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65443642 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65443689 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65443736 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65443783 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65443832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65443879 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
65443926 CTTATCACATATATATACACTTTCACATTCATCACATTAGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65443975 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65444022 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65444069 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65444116 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65444163 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
65444189 CACAATTATC
Statistics
Matches: 515, Mismatches: 28, Indels: 8
0.93 0.05 0.01
Matches are distributed among these distances:
47 425 0.83
49 90 0.17
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65443851 original size:143 final size:141
Alignment explanation
Indices: 65443595--65444188 Score: 972
Period size: 143 Copynumber: 4.2 Consensus size: 141
65443585 CCCTTCGGGA
* * * * * * * *
65443595 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
65443660 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
65443725 GGCTATTAGGC
131 GGCCATTAGGC
65443736 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
65443801 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65443866 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
65443879 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
** *
65443944 ACTTTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
65444009 TCGGCTATTAGGC
129 TCGGCCATTAGGC
*
65444022 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
65444087 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65444152 GGCCATTAGGC
131 GGCCATTAGGC
* *
65444163 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
65444189 CACAATTATC
Statistics
Matches: 428, Mismatches: 23, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
141 153 0.36
143 275 0.64
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:65447330 original size:39 final size:39
Alignment explanation
Indices: 65447276--65447424 Score: 217
Period size: 39 Copynumber: 3.8 Consensus size: 39
65447266 CAGTGATGTT
* * * *
65447276 TATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCGAACTTAAGGTCCGCAGGCTATGTGCTAGAATTA
*
65447315 TATCCGAACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
1 TATCCGAACTTAAGGTCCGCAGGCTATGTGCTAGAATTA
* *
65447354 TATCCGGACTTAAGGTCTGCAGGCTATGTGCTAGAATTA
1 TATCCGAACTTAAGGTCCGCAGGCTATGTGCTAGAATTA
* *
65447393 TAACCGAACTTAAGGTCCGCAGGCTACGTGCT
1 TATCCGAACTTAAGGTCCGCAGGCTATGTGCT
65447425 GGAAATATGT
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGAACTTAAGGTCCGCAGGCTATGTGCTAGAATTA
Found at i:65447365 original size:78 final size:78
Alignment explanation
Indices: 65447276--65447456 Score: 238
Period size: 78 Copynumber: 2.3 Consensus size: 78
65447266 CAGTGATGTT
* * * * *
65447276 TATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTATATCCGAACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAATTATAACCGAACTTAAGGTCCGCAGGCTA
* *
65447341 TGTGCTAGAATTA
66 CGTGCTAGAAATA
*
65447354 TATCCGGACTTAAGGTCTGCAGGCTATGTGCTAGAATTATAACCGAACTTAAGGTCCGCAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAATTATAACCGAACTTAAGGTCCGCAGGCTA
*
65447419 CGTGCTGGAAATA
66 CGTGCTAGAAATA
* * *
65447432 TGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAGGT-CCGCAGGCT
65447457 TCGAGCTGGT
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
77 5 0.06
78 84 0.94
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (78 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAATTATAACCGAACTTAAGGTCCGCAGGCTA
CGTGCTAGAAATA
Found at i:65450259 original size:47 final size:47
Alignment explanation
Indices: 65450208--65450310 Score: 163
Period size: 47 Copynumber: 2.2 Consensus size: 47
65450198 TTAGGATTCT
*
65450208 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGCATATATGAGATAAGGCCTAATGGCCG
* *
65450255 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCG
65450302 ATGTGATGA
1 ATGTGATGA
65450311 GGCCTAATGG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
46 1 0.02
47 51 0.98
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCG
Found at i:65450321 original size:69 final size:69
Alignment explanation
Indices: 65450241--65450379 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
65450231 ATATGAGATA
65450241 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
65450306 GATG
66 GATG
65450310 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
65450375 GATG
66 GATG
65450379 A
1 A
65450380 ATGTGAAAGT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.27
Consensus pattern (69 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
GATG
Found at i:65450331 original size:22 final size:22
Alignment explanation
Indices: 65450280--65450332 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
65450270 AAGTGTATAT
*
65450280 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAGGCCTAATGGCCG
65450302 ATGTGATGAGGCCTAATGGCCG
1 ATGTGATGAGGCCTAATGGCCG
65450324 ATGTGATGA
1 ATGTGATGA
65450333 ATGTGAAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.25
Consensus pattern (22 bp):
ATGTGATGAGGCCTAATGGCCG
Found at i:65450353 original size:47 final size:47
Alignment explanation
Indices: 65450302--65450452 Score: 212
Period size: 47 Copynumber: 3.2 Consensus size: 47
65450292 CTAATGGCCG
*
65450302 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
65450349 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * *
65450396 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
65450443 ATGTGATAAG
1 ATGTGATAAG
65450453 TCCCGAAGGG
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (47 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:65450416 original size:116 final size:116
Alignment explanation
Indices: 65450208--65450425 Score: 330
Period size: 116 Copynumber: 1.9 Consensus size: 116
65450198 TTAGGATTCT
*
65450208 ATGTGATGGATGTGAACATGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * *
65450273 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAGGCCTAATGGCCG
66 TATATATATGTGACAAGGCCGAATGGCCAACGTGATGAGGCCTAATGGCCG
* *
65450324 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
65450388 GTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
65 GTATATATATGTGACAAGGCCGAATGGCCAACGTGATG
65450426 GATGTGAAAG
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
115 1 0.01
116 90 0.99
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (116 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TATATATATGTGACAAGGCCGAATGGCCAACGTGATGAGGCCTAATGGCCG
Found at i:65450672 original size:37 final size:37
Alignment explanation
Indices: 65450571--65450672 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
65450561 CCGAGCTCTA
*
65450571 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
65450608 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
65450645 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
65450673 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:65453521 original size:36 final size:37
Alignment explanation
Indices: 65453452--65453522 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
65453442 TTTAGCTCGA
*
65453452 ATAATCCCCACACGTAGTCATCGGGTCTTACCCGGGC
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
*
65453489 ATAATCTCCACACGTAGCCAT-GGGTCTTACCCGG
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGG
65453523 AATATATTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 13 0.41
37 19 0.59
ACGTcount: A:0.23, C:0.34, G:0.21, T:0.23
Consensus pattern (37 bp):
ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
Found at i:65453718 original size:48 final size:48
Alignment explanation
Indices: 65453656--65453761 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
65453646 CGGCCACAAT
* *
65453656 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
*
65453704 ATATACATATCTCATACATATTTCACACTAGCCATTCTGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
65453752 ACATATATAT
1 ATATACATAT
65453762 ATCTTGTACA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:65462860 original size:47 final size:47
Alignment explanation
Indices: 65462806--65463731 Score: 1624
Period size: 47 Copynumber: 19.8 Consensus size: 47
65462796 TTTAGGATTT
*
65462806 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
65462853 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGTCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
65462900 GATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
65462947 GATGTGATGAATGTGAAAGTGTATGTATGTGATGAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
65462994 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCT
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
65463041 GATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATCGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
65463088 GATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
65463133 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
65463180 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
65463227 GATGTGATGAATGTGAAGGCGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
65463274 GATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
65463321 GATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
65463367 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
65463414 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
65463461 GATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
65463508 GATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
65463555 GATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
65463602 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
65463649 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
65463696 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65463732 TCCCGAAGGG
Statistics
Matches: 841, Mismatches: 35, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
45 44 0.05
46 45 0.05
47 752 0.89
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:65463562 original size:22 final size:22
Alignment explanation
Indices: 65463534--65463609 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
65463524 AAGTGTACAT
65463534 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** * **
65463556 ATGTGATGAATGTGAAAGTGTACAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
65463581 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
65463603 ATGTGAT
1 ATGTGAT
65463610 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:65463906 original size:37 final size:37
Alignment explanation
Indices: 65463850--65463928 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65463840 CCGAGCTCTA
* * *
65463850 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
65463887 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
65463924 AAGAC
1 AAGAC
65463929 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:65467862 original size:39 final size:39
Alignment explanation
Indices: 65467808--65467931 Score: 149
Period size: 39 Copynumber: 3.2 Consensus size: 39
65467798 CAGTGATGTT
* *
65467808 TATCCGGGCTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
* *
65467847 TATCCGGATTTAGGGTCCGCATGCTATGTGCTAGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
* * * * * *
65467886 TAACCGAACTTAAGGTCTGCAGGCTACGTGCTAGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
*
65467925 TGTCCGG
1 TATCCGG
65467932 GCTAAAGTCC
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
Found at i:65481895 original size:21 final size:21
Alignment explanation
Indices: 65481871--65481912 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
65481861 GTGATTGGTT
65481871 AGGAGCATGTACATAGCTTAA
1 AGGAGCATGTACATAGCTTAA
65481892 AGGAGCATGTACATAGCTTAA
1 AGGAGCATGTACATAGCTTAA
65481913 CTATATTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (21 bp):
AGGAGCATGTACATAGCTTAA
Found at i:65484535 original size:32 final size:32
Alignment explanation
Indices: 65484453--65484535 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 32
65484443 TGAAGTTGAA
* * * *
65484453 ATGGGCTA-GCCCAACTGATATTGGTTTTGAT
1 ATGGGCTAGGCCCAACTGATATTGATTCTAAG
*
65484484 AT-GGTTAGGCCCAACTGATATTGATTCTAAG
1 ATGGGCTAGGCCCAACTGATATTGATTCTAAG
*
65484515 ATGGGCTAGGCCCAATTGATA
1 ATGGGCTAGGCCCAACTGATA
65484536 CTGTGATCGG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
30 4 0.09
31 23 0.53
32 16 0.37
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (32 bp):
ATGGGCTAGGCCCAACTGATATTGATTCTAAG
Found at i:65488351 original size:7 final size:7
Alignment explanation
Indices: 65488339--65488364 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
65488329 CCATTCTTAA
65488339 TCATCCC
1 TCATCCC
65488346 TCATCCC
1 TCATCCC
65488353 TCATCCC
1 TCATCCC
65488360 TCATC
1 TCATC
65488365 ATTCTCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:65488933 original size:56 final size:56
Alignment explanation
Indices: 65488847--65488966 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
65488837 ACAAGGGATG
65488847 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
65488903 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
65488959 ATGGGCAA
1 ATGGGCAA
65488967 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:65490497 original size:49 final size:47
Alignment explanation
Indices: 65490418--65491016 Score: 864
Period size: 47 Copynumber: 12.6 Consensus size: 47
65490408 TATTTGAATA
* *
65490418 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
65490465 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65490514 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65490563 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65490610 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
65490659 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65490706 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65490755 AATGTGAACA-TGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65490802 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
** *
65490849 AATGTGAACA-TGTGCATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65490896 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65490943 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65490990 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
65491017 TCCCGAAGGG
Statistics
Matches: 525, Mismatches: 19, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 337 0.64
49 186 0.35
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:65490526 original size:96 final size:94
Alignment explanation
Indices: 65490418--65491016 Score: 864
Period size: 96 Copynumber: 6.3 Consensus size: 94
65490408 TATTTGAATA
* *
65490418 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
*
65490483 TATGTGATAAGGCCTAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65490514 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
65490579 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65490610 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
65490675 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
65490706 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
* *
65490770 ATGTGAGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * **
65490802 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGCA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
65490865 TGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65490896 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
65490960 ATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65490990 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
65491017 TCCCGAAGGG
Statistics
Matches: 471, Mismatches: 26, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
93 2 0.00
94 183 0.39
96 239 0.51
97 2 0.00
98 45 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:65493380 original size:40 final size:39
Alignment explanation
Indices: 65493336--65493413 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
65493326 AGTGACCATA
* *
65493336 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
*
65493376 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 TCCGGACTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
65493414 ATTCGGGTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 25 0.71
40 10 0.29
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTGGTGCGAGTTACTAAT
Found at i:65493397 original size:39 final size:40
Alignment explanation
Indices: 65493296--65493439 Score: 136
Period size: 40 Copynumber: 3.6 Consensus size: 40
65493286 TCGAATGATG
* * * *
65493296 TCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
65493335 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
65493376 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
65493416 T-CGGGTTAAGTCCCGTAGAGCATT
1 TCCGGGCTAAGTCCCGAAG-GCATT
65493440 CATGCTAGTG
Statistics
Matches: 88, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
39 31 0.35
40 43 0.49
41 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:65493417 original size:40 final size:39
Alignment explanation
Indices: 65493349--65493439 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 39
65493339 GGACTAAGAT
*
65493349 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTGGTGCGAGTTACTAATT-CGGGCTAAGTC
*
65493388 CCGAAGGCATTGGTGCGAGTTACTAAATTCGGGTTAAGTC
1 CCGAAGGCATTGGTGCGAGTTACT-AATTCGGGCTAAGTC
*
65493428 CCGTAGAGCATT
1 CCGAAG-GCATT
65493440 CATGCTAGTG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
39 31 0.67
40 10 0.22
41 5 0.11
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGGTGCGAGTTACTAATTCGGGCTAAGTC
Found at i:65493466 original size:40 final size:40
Alignment explanation
Indices: 65493417--65493929 Score: 776
Period size: 40 Copynumber: 12.8 Consensus size: 40
65493407 TTACTAAATT
* *
65493417 CGGGTTAAGTCCCGTAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
65493457 CGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* *
65493497 TGGGCTAAGTTCCGAA-AGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* *
65493536 CGGGTTAAGTCCCGAAGATCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
65493576 CGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
65493616 CGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
65493656 CGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* *
65493696 CGGGCTAAGTTCCGAAGAGCATTCCTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
65493736 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
65493776 CGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * *
65493816 CAGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* ** * * * *
65493856 CGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * *
65493896 CGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
65493930 CGTGTATTCG
Statistics
Matches: 435, Mismatches: 37, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 0.08
40 399 0.92
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
Found at i:65495283 original size:56 final size:56
Alignment explanation
Indices: 65495197--65495316 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
65495187 ACAAGGGATG
65495197 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
65495253 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
65495309 ATGGGCAA
1 ATGGGCAA
65495317 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:65496947 original size:96 final size:96
Alignment explanation
Indices: 65496769--65497381 Score: 856
Period size: 96 Copynumber: 6.4 Consensus size: 96
65496759 TATTTGAATA
* * *
65496769 AATGTGAAAGTG--TATATACGTGATAAGGCCTAATGACCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT-
*
65496832 AATATGTGATAAGGCCTAATGGCCAATGTGATG
65 -ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65496865 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
65496930 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65496961 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
65497026 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65497057 AATGTGAAAGTGTAGATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
* *
65497121 ATGTGAGATAAGGCCGAATGGCCAATGTGATG
65 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65497153 AATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTG
1 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTA
*
65497214 TATGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65497247 AATGTGAACA-TG--CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
65497309 ATATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65497341 GATGTGGAAGTGTATA-A-ATGTGATAAGTCCCGAA-GGCCAAT
1 AATGTGAAAGTGTATATATATGTGATAAG-GCCGAATGGCCAAT
65497382 TGTGTCAGTA
Statistics
Matches: 479, Mismatches: 29, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
93 2 0.00
94 188 0.39
95 6 0.01
96 235 0.49
97 2 0.00
98 46 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:65496948 original size:47 final size:47
Alignment explanation
Indices: 65496769--65497381 Score: 858
Period size: 47 Copynumber: 12.9 Consensus size: 47
65496759 TATTTGAATA
* * *
65496769 AATGTGAAAGTGTATATACGTGATAAGGCCTAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
65496816 AATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTAT--ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65496865 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65496914 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65496961 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
65497010 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65497057 AATGTGAAAGTGTAGATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGT--ATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65497106 AATGTGAACA-TGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65497153 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65497200 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65497247 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65497294 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
65497341 GATGTGGAAGTGTATAAATGTGATAAGTCCCGAA-GGCCAAT
1 AATGTGAAAGTGTATATATGTGATAAG-GCCGAATGGCCAAT
65497382 TGTGTCAGTA
Statistics
Matches: 534, Mismatches: 21, Indels: 22
0.93 0.04 0.04
Matches are distributed among these distances:
46 1 0.00
47 348 0.65
48 5 0.01
49 176 0.33
50 1 0.00
51 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:65497055 original size:22 final size:22
Alignment explanation
Indices: 65497027--65497104 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
65497017 AAGTGTATAT
65497027 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
65497049 ATGTGATGAATG-TGAAAGTGTAGATA
1 ATGTGAT-AAGGCCG-AA-TG--GCCA
65497075 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
65497098 ATGTGAT
1 ATGTGAT
65497105 GAATGTGAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 15 0.37
23 7 0.17
24 2 0.05
25 2 0.05
26 7 0.17
27 8 0.20
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:65497245 original size:22 final size:22
Alignment explanation
Indices: 65497218--65497339 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
65497208 CATGTGTATG
65497218 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
65497240 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
65497265 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
65497287 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
65497312 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
65497334 TGTGAT
1 TGTGAT
65497340 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:65499429 original size:37 final size:37
Alignment explanation
Indices: 65499379--65499457 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65499369 TTATTACGAA
* * *
65499379 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
65499416 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
65499453 GTCTT
1 GTCTT
65499458 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:65499734 original size:47 final size:48
Alignment explanation
Indices: 65499575--65499798 Score: 391
Period size: 47 Copynumber: 4.7 Consensus size: 48
65499565 GCCCTTCGGG
*
65499575 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
65499625 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
65499673 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
65499720 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
65499767 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
65499799 ATACTATCAT
Statistics
Matches: 173, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
47 87 0.50
48 48 0.28
49 34 0.20
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
Found at i:65506718 original size:39 final size:39
Alignment explanation
Indices: 65506521--65506715 Score: 302
Period size: 39 Copynumber: 5.0 Consensus size: 39
65506511 AATTATATTA
* **
65506521 CCAGCACAAAGCCTGCGAAACTTTAG-CCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
65506559 CCAACATGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
65506598 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
65506637 CCAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
65506676 CTAGCACAAAGCCTGCGAGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
65506715 C
1 C
65506716 TAGTGTCTTG
Statistics
Matches: 144, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
38 21 0.15
39 123 0.85
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:65512798 original size:93 final size:93
Alignment explanation
Indices: 65512686--65512857 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
65512676 AGCCCATAAG
* *
65512686 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65512751 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
65512779 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65512844 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
65512858 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:65512854 original size:46 final size:46
Alignment explanation
Indices: 65512679--65512854 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
65512669 TGTAACCAGC
* * * *
65512679 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
65512725 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
65512775 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
65512818 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
65512855 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:65517392 original size:37 final size:38
Alignment explanation
Indices: 65517340--65517420 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 38
65517330 TATCTAAACC
65517340 CAGAAGAAAATCAAATATGATTTGAACAACAATCAATG
1 CAGAAGAAAATCAAATATGATTTGAACAACAATCAATG
* * * * *
65517378 TAGAAG-AAATCAAATTTGGTTTGAATAGCAATCAATG
1 CAGAAGAAAATCAAATATGATTTGAACAACAATCAATG
65517415 CAGAAG
1 CAGAAG
65517421 CACAACTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 32 0.86
38 5 0.14
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.23
Consensus pattern (38 bp):
CAGAAGAAAATCAAATATGATTTGAACAACAATCAATG
Found at i:65522988 original size:13 final size:13
Alignment explanation
Indices: 65522970--65522995 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65522960 ATATTATAAT
65522970 TATTTTATGTTAA
1 TATTTTATGTTAA
65522983 TATTTTATGTTAA
1 TATTTTATGTTAA
65522996 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:65524597 original size:39 final size:39
Alignment explanation
Indices: 65524512--65524648 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 39
65524502 GGACTAAGAT
* * * * * *
65524512 CCGAGGGCATTTGTGCTAGTCACTATATCCGGACTAAGAT-
1 CCGAAGGCATTCGTGCT-GTTATTATAACCGGGCTAAG-TC
*
65524552 CCGAAGGCAATT-GTGCTGTTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTGTTATTATAACCGGGCTAAGTC
*
65524591 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGCTAAGTC
1 CCGAAGGCATTCGTGC-TGTTATTATAACCGGGCTAAGTC
65524631 CCGAAGGCATTCGTGCTG
1 CCGAAGGCATTCGTGCTG
65524649 GTTGTTACAT
Statistics
Matches: 84, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
38 4 0.05
39 28 0.33
40 49 0.58
41 3 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCTGTTATTATAACCGGGCTAAGTC
Found at i:65531284 original size:13 final size:13
Alignment explanation
Indices: 65531266--65531291 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65531256 ATATTATAAT
65531266 TATTTTATGTTAA
1 TATTTTATGTTAA
65531279 TATTTTATGTTAA
1 TATTTTATGTTAA
65531292 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:65532843 original size:40 final size:40
Alignment explanation
Indices: 65532788--65532863 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
65532778 TATTCGGATG
*
65532788 ATATCCGGACTAAGATCCGAAGGCATTTGTGATAGTCACT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGATAGTCACT
*
65532828 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGATAGT
65532864 TCTTATAACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCAATTGTGATAGTCACT
Found at i:65532891 original size:40 final size:40
Alignment explanation
Indices: 65532807--65532940 Score: 119
Period size: 40 Copynumber: 3.4 Consensus size: 40
65532797 CTAAGATCCG
* * * * * * *
65532807 AAGGCATTTGTGATAGTCACTATATCCGGACTAAGAT-CCG
1 AAGGCATTCGTGCTAGTTATTATAACCGGGCTAAG-TCCCA
* *
65532847 AAGGCAATT-GTGCTAGTTCTTATAACCGGGTTAAGTCCCA
1 AAGGC-ATTCGTGCTAGTTATTATAACCGGGCTAAGTCCCA
** * *
65532887 AAGGCATTCGTGCGGGTTATTATAATCGGGCTAAGTCCCG
1 AAGGCATTCGTGCTAGTTATTATAACCGGGCTAAGTCCCA
65532927 AAGGCATTCGTGCT
1 AAGGCATTCGTGCT
65532941 GGTTGTTACA
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
39 4 0.05
40 69 0.91
41 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (40 bp):
AAGGCATTCGTGCTAGTTATTATAACCGGGCTAAGTCCCA
Found at i:65537723 original size:27 final size:27
Alignment explanation
Indices: 65537693--65537754 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
65537683 GGGGGAAAAT
**
65537693 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCCACCCCACAAGGGTATCTC
* * *
65537720 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCCACCCCACAAGGGTATCTC
*
65537747 GGCAATTC
1 GGTAATTC
65537755 TACAACTTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (27 bp):
GGTAATTCCACCCCACAAGGGTATCTC
Found at i:65541763 original size:30 final size:30
Alignment explanation
Indices: 65541729--65541789 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
65541719 TCCTTAACTC
65541729 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
65541759 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
65541789 A
1 A
65541790 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:65547977 original size:27 final size:26
Alignment explanation
Indices: 65547929--65547980 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65547919 GCGAGGCTGC
*
65547929 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
65547955 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
65547981 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65551985 original size:262 final size:262
Alignment explanation
Indices: 65551520--65552041 Score: 1026
Period size: 262 Copynumber: 2.0 Consensus size: 262
65551510 CATTTGTAAA
65551520 AAAATTGGTAGAAAAGAAAAACCTTTTAAATTGCGCATACTGATAAAATTGTTATGGAATATATG
1 AAAATTGGTAGAAAAGAAAAACCTTTTAAATTGCGCATACTGATAAAATTGTTATGGAATATATG
*
65551585 CTAAATGGGCCTAGATGACAAAATCGGCTAAGTAGGGCCCATTAGGGGTTTTAGGCCCAATAACT
66 CTAAATAGGCCTAGATGACAAAATCGGCTAAGTAGGGCCCATTAGGGGTTTTAGGCCCAATAACT
65551650 CAATTTCGCTAAAAATGGGCCAAAATCACTGTTTGCACCCATGAATTGTTAGTAACCGTTAATGA
131 CAATTTCGCTAAAAATGGGCCAAAATCACTGTTTGCACCCATGAATTGTTAGTAACCGTTAATGA
*
65551715 ACATGGAAACCCTAATTTTTGGTAAAATTACAGGATTACCCTTATAACATGAAAATGATCGTTTT
196 ACATGGAAACCCTAATTTTTGGTAAAATTACAAGATTACCCTTATAACATGAAAATGATCGTTTT
65551780 AC
261 AC
65551782 AAAATTGGTAGAAAAGAAAAACCTTTTAAATTGCGCATACTGATAAAATTGTTATGGAATATATG
1 AAAATTGGTAGAAAAGAAAAACCTTTTAAATTGCGCATACTGATAAAATTGTTATGGAATATATG
65551847 CTAAATAGGCCTAGATGACAAAATCGGCTAAGTAGGGCCCATTAGGGGTTTTAGGCCCAATAACT
66 CTAAATAGGCCTAGATGACAAAATCGGCTAAGTAGGGCCCATTAGGGGTTTTAGGCCCAATAACT
65551912 CAATTTCGCTAAAAATGGGCCAAAATCACTGTTTGCACCCATGAATTGTTAGTAACCGTTAATGA
131 CAATTTCGCTAAAAATGGGCCAAAATCACTGTTTGCACCCATGAATTGTTAGTAACCGTTAATGA
65551977 ACATGGAAACCCTAATTTTTGGTAAAATTACAAGATTACCCTTATAACATGAAAATGATCGTTTT
196 ACATGGAAACCCTAATTTTTGGTAAAATTACAAGATTACCCTTATAACATGAAAATGATCGTTTT
65552042 GCCCCTAGGT
Statistics
Matches: 258, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
262 258 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (262 bp):
AAAATTGGTAGAAAAGAAAAACCTTTTAAATTGCGCATACTGATAAAATTGTTATGGAATATATG
CTAAATAGGCCTAGATGACAAAATCGGCTAAGTAGGGCCCATTAGGGGTTTTAGGCCCAATAACT
CAATTTCGCTAAAAATGGGCCAAAATCACTGTTTGCACCCATGAATTGTTAGTAACCGTTAATGA
ACATGGAAACCCTAATTTTTGGTAAAATTACAAGATTACCCTTATAACATGAAAATGATCGTTTT
AC
Found at i:65552159 original size:11 final size:11
Alignment explanation
Indices: 65552123--65552178 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
65552113 CATGGTATGT
65552123 ATGATATGCAC
1 ATGATATGCAC
* *
65552134 ATGACATG--T
1 ATGATATGCAC
65552143 ATGATATGCAC
1 ATGATATGCAC
*
65552154 ATGATATG--T
1 ATGATATGCAC
65552163 ATGATATGCAC
1 ATGATATGCAC
65552174 ATGAT
1 ATGAT
65552179 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:65552178 original size:20 final size:20
Alignment explanation
Indices: 65552112--65552178 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
65552102 ATTTTGATAA
*
65552112 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
65552132 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
65552152 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
65552172 ACATGAT
1 ACATGAT
65552179 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:65552254 original size:24 final size:24
Alignment explanation
Indices: 65552227--65552370 Score: 186
Period size: 24 Copynumber: 6.0 Consensus size: 24
65552217 GGAGGAAGTG
65552227 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
65552251 CAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
65552274 CTAAAAGGG-TTATGCCCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
* *
65552298 TAAAAAGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
65552322 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
65552346 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
65552371 ATGATAAAAC
Statistics
Matches: 109, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
23 21 0.19
24 77 0.71
25 11 0.10
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:65552308 original size:47 final size:48
Alignment explanation
Indices: 65552228--65552369 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
65552218 GAGGAAGTGC
* *
65552228 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTACT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGCTTATGCCCCAGTTACT
*
65552276 AAAAGGG-TTATGCCCCAGTTATTAAAAAGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGCTTATGCCCCAGTTACT
* *
65552323 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAA-AGGCTTATGCC-CCAGTTA
65552370 TATGATAAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 11 0.13
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAAGGCTTATGCCCCAGTTACT
Found at i:65552350 original size:71 final size:73
Alignment explanation
Indices: 65552228--65552370 Score: 218
Period size: 71 Copynumber: 2.0 Consensus size: 73
65552218 GAGGAAGTGC
* * *
65552228 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTACTAAAAG-GGTTATGCC-C
1 AAAAAGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTACTAAAAGAGGCTAGGCCTC
65552291 CAGTTATT
66 CAGTTATT
* * *
65552299 AAAAAGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAAGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTACTAAAAGAGGCTAGGCCTC
65552364 CAGTTAT
66 CAGTTAT
65552371 ATGATAAAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
71 49 0.77
72 7 0.11
73 8 0.12
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (73 bp):
AAAAAGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTACTAAAAGAGGCTAGGCCTC
CAGTTATT
Found at i:65557357 original size:43 final size:42
Alignment explanation
Indices: 65557309--65557430 Score: 113
Period size: 43 Copynumber: 2.9 Consensus size: 42
65557299 AGCTTGTACA
* * * *
65557309 ATGCCAACATCCCAGAC-GTGTTCTTACATGCACTCAAATATCG
1 ATGCCAACATCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
65557352 ATGCC-ACTATCCCAGACAGGGTCTTACACGAAATCAAATATG
1 ATGCCAAC-ATCCCAGACAGGGTCTTACACGAAATCAAATATG
** * * *
65557394 ATGCCAATGTCCCAGACATGGTCATACATGTAAATCA
1 ATGCCAACATCCCAGACAGGGTCTTACACG-AAATCA
65557431 TAAGTCGATG
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
42 26 0.39
43 39 0.59
44 1 0.02
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
ATGCCAACATCCCAGACAGGGTCTTACACGAAATCAAATATG
Found at i:65557410 original size:42 final size:43
Alignment explanation
Indices: 65557342--65557465 Score: 119
Period size: 42 Copynumber: 2.9 Consensus size: 43
65557332 TTACATGCAC
* *
65557342 TCAAATATCGATGCCACTATCCCAGACAGGGTCTTACACG-AAA
1 TCAAATAT-GATGCCAATGTCCCAGACAGGGTCTTACACGTAAA
* * *
65557385 TCAAATATGATGCCAATGTCCCAGACATGGTCATACATGTAAA
1 TCAAATATGATGCCAATGTCCCAGACAGGGTCTTACACGTAAA
* * *
65557428 TCATAAGT-CGATGTCAATGTCCTAGAC-GTGGTCTTACA
1 TCA-AA-TATGATGCCAATGTCCCAGACAG-GGTCTTACA
65557466 TGATAACACA
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
42 26 0.39
43 14 0.21
44 26 0.39
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (43 bp):
TCAAATATGATGCCAATGTCCCAGACAGGGTCTTACACGTAAA
Found at i:65570965 original size:28 final size:28
Alignment explanation
Indices: 65570902--65571055 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
65570892 ATATTAAGTC
* *
65570902 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
65570929 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
65570957 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
65570985 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
65571013 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
65571041 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65571056 GTACAATTTA
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 102 0.82
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:65578284 original size:28 final size:28
Alignment explanation
Indices: 65578221--65578400 Score: 227
Period size: 28 Copynumber: 6.4 Consensus size: 28
65578211 ATATTAAGTC
*
65578221 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
65578248 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
65578276 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
65578304 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
65578332 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
* * * *
65578361 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
65578390 CGCACACTTAG
1 CGCACACTTAG
65578401 CGCCAATCTC
Statistics
Matches: 142, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 22 0.15
28 75 0.53
29 45 0.32
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65580942 original size:40 final size:40
Alignment explanation
Indices: 65580855--65581075 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
65580845 TATTCGGATG
* *
65580855 ATATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
*
65580894 ATATCCGGGATAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
*
65580934 ATACCCGGGCTAAGTCCCGAAGGC-GTTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCT-A-TTGACT
** * *
65580974 ATATCCGGGCTAAGTCCCGAAGGCTTTTTTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
65581014 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
*
65581054 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
65581076 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
39 42 0.27
40 110 0.70
41 6 0.04
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:65586353 original size:49 final size:47
Alignment explanation
Indices: 65586214--65586677 Score: 757
Period size: 47 Copynumber: 9.7 Consensus size: 47
65586204 TTAGGATTCT
*
65586214 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65586261 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65586308 ATGTGATGAATGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCG
*
65586357 ATGTGATGAATGTGAAAGTGTATATATAGGTGATAATGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCG
*
65586406 ATGTGATGAATGTGAAAGTTTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCG
*
65586455 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65586502 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
65586549 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
65586596 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
65586643 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65586678 TCCCGAAGGG
Statistics
Matches: 393, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 263 0.67
49 122 0.31
51 8 0.02
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:65586852 original size:37 final size:37
Alignment explanation
Indices: 65586796--65586871 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
65586786 CTGAGCTCTA
* * *
65586796 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
65586833 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
65586870 AA
1 AA
65586872 CACTTCGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:65593341 original size:40 final size:40
Alignment explanation
Indices: 65593253--65593475 Score: 217
Period size: 40 Copynumber: 5.6 Consensus size: 40
65593243 TATTCGGATG
* * * *
65593253 ATATCTGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTATTGACT
65593292 ATATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTATTGACT
* *
65593332 ATA-CTCGGGCTAAGTCCCGAAGG-CGTTTGTGCGAGTTG-CT
1 ATATC-CGGGCTAAGTCCCGAAGGTAG-TTGTGCTA-TTGACT
** * *
65593372 ATATCCGGGCTAAGTCTTGAAGGCT-TTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGG-TAGTTGTGCTATTGACT
* * * *
65593412 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTA-TTGACT
*
65593452 ATATCC-GGCTAAATCCCGAAGGTA
1 ATATCCGGGCTAAGTCCCGAAGGTA
65593476 CTTGGGTTTG
Statistics
Matches: 154, Mismatches: 20, Indels: 20
0.79 0.10 0.10
Matches are distributed among these distances:
39 42 0.27
40 106 0.69
41 6 0.04
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGTAGTTGTGCTATTGACT
Found at i:65593394 original size:80 final size:79
Alignment explanation
Indices: 65593253--65593473 Score: 279
Period size: 80 Copynumber: 2.8 Consensus size: 79
65593243 TATTCGGATG
* * * *
65593253 ATATCTGGGCTAAGTCCCGAAGGCATGGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG-T
1 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCT
*
65593316 AGTTGTGCTATTGACT
65 -GTTGTGCTAGTGACT
**
65593332 ATA-CTCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCTTGAAGGC
1 ATATC-CGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGC
*
65593396 TTTTGTGCTAGTGACT
64 TGTTGTGCTAGTGACT
* *
65593412 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
65593474 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 34 0.27
80 85 0.69
81 4 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCTG
TTGTGCTAGTGACT
Found at i:65599351 original size:48 final size:48
Alignment explanation
Indices: 65599280--65599455 Score: 177
Period size: 48 Copynumber: 3.8 Consensus size: 48
65599270 GTTATGTGTG
* *
65599280 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGATATGTA
1 ATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTA
** * * * *
65599328 ATTTTGTGTAAGACCATAG-CTGGG-C-T---ATTGGCATCGACATATG
1 ATCCTATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGTA
*
65599371 ATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
1 ATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTA
* * *
65599419 ATCCCATGTAAGACCATATAC-GGGATATGGCATTGGC
1 ATCCTATGTAAGACCATGT-CTGGGACATGGCATTGGC
65599456 TTCTTAGTAT
Statistics
Matches: 104, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
42 1 0.01
43 32 0.31
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 65 0.62
49 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
ATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTA
Found at i:65605700 original size:43 final size:42
Alignment explanation
Indices: 65605554--65605692 Score: 163
Period size: 43 Copynumber: 3.2 Consensus size: 42
65605544 AAGATCAAGA
* ** *
65605554 CTTTTAGCGGCGTTTGTGAGAAAAGCACCGCTAAAAGTCATGG
1 CTTTTAGCGGCGTTTTTG-GGGAAGCGCCGCTAAAAGTCATGG
* * *
65605597 GTTTTAGCGGCGTTTGTAGGGGAAGCGTCGCTAAAAGTCATGG
1 CTTTTAGCGGCGTTT-TTGGGGAAGCGCCGCTAAAAGTCATGG
*
65605640 CTTTTAGCGGCGTTTTTTGGGGAAGCGCCGCTAAAAG-CTATGA
1 CTTTTAGCGGCG-TTTTTGGGGAAGCGCCGCTAAAAGTC-ATGG
65605683 CTTTTAGCGG
1 CTTTTAGCGG
65605693 TGCTTTTTTC
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.01
43 77 0.94
44 4 0.05
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (42 bp):
CTTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAAAAGTCATGG
Found at i:65607894 original size:27 final size:27
Alignment explanation
Indices: 65607864--65608041 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65607854 ATATTAAGTC
* * *
65607864 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
65607891 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
65607919 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
65607946 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
65607973 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
65608000 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
65608027 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65608042 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:65607948 original size:55 final size:54
Alignment explanation
Indices: 65607864--65608041 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
65607854 ATATTAAGTC
* * *
65607864 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
65607919 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
65607973 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
65608027 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65608042 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:65608030 original size:81 final size:82
Alignment explanation
Indices: 65607885--65608040 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
65607875 TGCTATATAA
* *
65607885 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
65607950 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
65607967 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
65608030 ACACTTAGTGC
65 ACACTTAGTGC
65608041 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:65615897 original size:27 final size:27
Alignment explanation
Indices: 65615862--65616017 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
65615852 GTGCTATTAA
*
65615862 TCAACTCGCA-ACTTAGTGCCACATAA
1 TCAACTCGCACACTTAGTGCCACATAG
*
65615888 TCAAACTCGCACACTTAGTGCTACATAG
1 TC-AACTCGCACACTTAGTGCCACATAG
* *
65615916 TCAACTCTCGCACACTTAGTGCCGCATGG
1 TCAA--CTCGCACACTTAGTGCCACATAG
* *
65615945 TCAATTCGCACACTTAAGTG-CATCATAT
1 TCAACTCGCACACTT-AGTGCCA-CATAG
** *
65615973 TCATTTCGCACACTTAGTGCAACATAG
1 TCAACTCGCACACTTAGTGCCACATAG
*
65616000 TCAAATCGCACACTTAGT
1 TCAACTCGCACACTTAGT
65616018 CTGTACAATT
Statistics
Matches: 109, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
26 2 0.02
27 45 0.41
28 38 0.35
29 24 0.22
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
TCAACTCGCACACTTAGTGCCACATAG
Found at i:65621700 original size:25 final size:27
Alignment explanation
Indices: 65621663--65621715 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
65621653 TCAAACATGC
65621663 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
65621689 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
65621715 A
1 A
65621716 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:65629240 original size:47 final size:47
Alignment explanation
Indices: 65629174--65629553 Score: 625
Period size: 47 Copynumber: 8.1 Consensus size: 47
65629164 GAAATGATAG
65629174 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
65629221 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
65629268 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
65629315 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
65629362 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
65629409 TAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
65629456 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
65629503 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
65629550 TAAG
1 TAAG
65629554 TCCCGAAGGG
Statistics
Matches: 314, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 314 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:65635634 original size:32 final size:32
Alignment explanation
Indices: 65635597--65635661 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
65635587 AATGCTTACC
65635597 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
65635629 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
65635661 A
1 A
65635662 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Done.