Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 211 of 325
Found at i:65638133 original size:9 final size:9
Alignment explanation
Indices: 65638119--65638299 Score: 194
Period size: 9 Copynumber: 20.7 Consensus size: 9
65638109 TAACTCTAAT
65638119 TAAGTTATG
1 TAAGTTATG
65638128 TAAGTTATG
1 TAAGTTATG
* * *
65638137 ATATGATATA
1 -TAAGTTATG
*
65638147 T-ATTTATG
1 TAAGTTATG
65638155 T-A-TTATG
1 TAAGTTATG
65638162 TAAGTTATG
1 TAAGTTATG
*
65638171 TAAATTATG
1 TAAGTTATG
*
65638180 TAAGTTTTG
1 TAAGTTATG
65638189 TAAGTTATG
1 TAAGTTATG
*
65638198 TGAGTTATG
1 TAAGTTATG
* *
65638207 TGAGTTATC
1 TAAGTTATG
*
65638216 TAA---ATA
1 TAAGTTATG
65638222 TAAGTTATG
1 TAAGTTATG
65638231 TAAGTTATG
1 TAAGTTATG
*
65638240 TGAGTTATG
1 TAAGTTATG
65638249 TAAGTTATG
1 TAAGTTATG
*
65638258 TAAGTTATA
1 TAAGTTATG
65638267 TAAGTTATG
1 TAAGTTATG
65638276 TAAGTTATG
1 TAAGTTATG
*
65638285 TGAGTTATG
1 TAAGTTATG
65638294 TAAGTT
1 TAAGTT
65638300 CAAGTATATA
Statistics
Matches: 144, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
6 5 0.03
7 6 0.04
8 6 0.04
9 121 0.84
10 6 0.04
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:65638239 original size:60 final size:60
Alignment explanation
Indices: 65638119--65638274 Score: 179
Period size: 60 Copynumber: 2.6 Consensus size: 60
65638109 TAACTCTAAT
* * * * * *
65638119 TAAGTTATGTAAGTTATGATATGATATAT-ATTTATGTATTATGTAAGTTATGTAAATTATG
1 TAAGTTATGTAAGTTATG-TAAGTTATATAAGTTATCTA-AATATAAGTTATGTAAATTATG
* * * * *
65638180 TAAGTTTTGTAAGTTATGTGAGTTATGTGAGTTATCTAAATATAAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTATGTAAGTTATATAAGTTATCTAAATATAAGTTATGTAAATTATG
*
65638240 TGAGTTATGTAAGTTATGTAAGTTATATAAGTTAT
1 TAAGTTATGTAAGTTATGTAAGTTATATAAGTTAT
65638275 GTAAGTTATG
Statistics
Matches: 79, Mismatches: 15, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
60 55 0.70
61 24 0.30
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46
Consensus pattern (60 bp):
TAAGTTATGTAAGTTATGTAAGTTATATAAGTTATCTAAATATAAGTTATGTAAATTATG
Found at i:65638534 original size:29 final size:29
Alignment explanation
Indices: 65638497--65638557 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
65638487 GGAAAAAATT
*
65638497 TTATTTTAATTAAATAATATTTATAA-AAA
1 TTATATTAATTAAATAATATTTA-AATAAA
*
65638526 TTATATTAATTTAATAATATTTAAATAAA
1 TTATATTAATTAAATAATATTTAAATAAA
65638555 TTA
1 TTA
65638558 ATCCAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
TTATATTAATTAAATAATATTTAAATAAA
Found at i:65638574 original size:39 final size:39
Alignment explanation
Indices: 65638503--65638617 Score: 176
Period size: 39 Copynumber: 2.9 Consensus size: 39
65638493 AATTTTATTT
* ** *
65638503 TAATTAAATAATATTTATAAAAATTATATTAATTTAATAA
1 TAATTAAATAA-ATTAATCCAAATTATATTAATTAAATAA
*
65638543 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
1 TAATTAAATAAATTAATCCAAATTATATTAATTAAATAA
65638582 TAATTAAATAAATTAATCCAAATTATATTAATTAAA
1 TAATTAAATAAATTAATCCAAATTATATTAATTAAA
65638618 ATAAGATTGA
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 59 0.86
40 10 0.14
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (39 bp):
TAATTAAATAAATTAATCCAAATTATATTAATTAAATAA
Found at i:65638575 original size:19 final size:18
Alignment explanation
Indices: 65638523--65638616 Score: 73
Period size: 19 Copynumber: 4.9 Consensus size: 18
65638513 ATATTTATAA
65638523 AAATTATATTAATTTAAT-
1 AAATTATATTAA-TTAATC
* *
65638541 AATATTTAAATAAATTAATCC
1 AA-A-TTATATTAATTAAT-C
*
65638562 AAATTATATTAATTAAATA
1 AAATTATATTAATT-AATC
* *
65638581 ATAATTAAATAAATTAATCC
1 A-AATTATATTAATTAAT-C
65638601 AAATTATATTAATTAA
1 AAATTATATTAATTAA
65638617 AATAAGATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
18 2 0.03
19 32 0.54
20 23 0.39
21 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATTATATTAATTAATC
Found at i:65638619 original size:15 final size:14
Alignment explanation
Indices: 65638497--65638617 Score: 69
Period size: 15 Copynumber: 9.0 Consensus size: 14
65638487 GGAAAAAATT
*
65638497 TTATTTTAATTAAA
1 TTATATTAATTAAA
* * *
65638511 TAATATTTATAAAAA
1 TTATATTAAT-TAAA
*
65638526 TTATATTAATTTAA
1 TTATATTAATTAAA
*
65638540 -TA-A-TATTTAAA
1 TTATATTAATTAAA
* *
65638551 -TAAATTAATCCAAA
1 TTATATTAAT-TAAA
65638565 TTATATTAATTAAA
1 TTATATTAATTAAA
65638579 -TA-A-TAATTAAA
1 TTATATTAATTAAA
* *
65638590 -TAAATTAATCCAAA
1 TTATATTAAT-TAAA
65638604 TTATATTAATTAAA
1 TTATATTAATTAAA
65638618 ATAAGATTGA
Statistics
Matches: 81, Mismatches: 17, Indels: 18
0.70 0.15 0.16
Matches are distributed among these distances:
11 18 0.22
12 4 0.05
13 11 0.14
14 21 0.26
15 27 0.33
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (14 bp):
TTATATTAATTAAA
Found at i:65642726 original size:3 final size:3
Alignment explanation
Indices: 65642720--65642763 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
65642710 TTTTTCTCTT
*
65642720 TTA TTA TTA TTA TTA TTC TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
65642764 TACTATTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:65643208 original size:21 final size:21
Alignment explanation
Indices: 65643184--65643225 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
65643174 CATTTTATAA
65643184 TTTA-AGGTCTAGTGATTTAGG
1 TTTACAGGTCTA-TGATTTAGG
* *
65643205 TTTACAGTTTTATGATTTAGG
1 TTTACAGGTCTATGATTTAGG
65643226 AATCTATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.48
Consensus pattern (21 bp):
TTTACAGGTCTATGATTTAGG
Found at i:65643311 original size:14 final size:14
Alignment explanation
Indices: 65643294--65643320 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65643284 TAGGATTCAA
65643294 GGTTTAATATTTAG
1 GGTTTAATATTTAG
65643308 GGTTTAATATTTA
1 GGTTTAATATTTA
65643321 TAGTTTATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.52
Consensus pattern (14 bp):
GGTTTAATATTTAG
Found at i:65672804 original size:55 final size:53
Alignment explanation
Indices: 65672663--65672871 Score: 256
Period size: 53 Copynumber: 3.9 Consensus size: 53
65672653 CTTTCCTTTT
* * *
65672663 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * * *
65672716 TAAACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
** * * * * *
65672769 TAGTAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTG
1 TA--AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
*
65672824 TAAAACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTT
1 T-AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
65672872 ACAACCTAAT
Statistics
Matches: 130, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
53 50 0.38
54 38 0.29
55 41 0.32
56 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (53 bp):
TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:65677721 original size:93 final size:93
Alignment explanation
Indices: 65677593--65677764 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
65677583 GCCCATAAGT
* * *
65677593 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTTAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65677658 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
65677686 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65677751 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
65677765 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:65677760 original size:46 final size:46
Alignment explanation
Indices: 65677585--65677760 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
65677575 TGTAACCCGC
* * *
65677585 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
65677631 CCATAAGTTAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
65677677 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
65677724 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
65677761 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:65677779 original size:46 final size:46
Alignment explanation
Indices: 65677640--65677779 Score: 126
Period size: 46 Copynumber: 3.0 Consensus size: 46
65677630 TCCATAAGTT
* * *
65677640 AACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCT--CG
1 AACTCGGACTCAACTCAATGAGTTCGGATGCCCA--TACATC-CTAGTG
* * * *
65677687 AACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCAT--AAGTG
1 AACTCGGACTCAACTCAATGAGTTCGG--ATGCCCATACATCCTAGTG
* *
65677733 AACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCTAGTG
1 AACTCGGACTCAACTCAATGAGTTCGGATGCCCATACATCCTAGTG
65677779 A
1 A
65677780 CATGTCACTT
Statistics
Matches: 74, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
44 8 0.11
46 32 0.43
47 30 0.41
49 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (46 bp):
AACTCGGACTCAACTCAATGAGTTCGGATGCCCATACATCCTAGTG
Found at i:65678221 original size:30 final size:30
Alignment explanation
Indices: 65678187--65678246 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65678177 ATTTAATACG
65678187 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
65678217 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
65678247 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:65685563 original size:12 final size:10
Alignment explanation
Indices: 65685524--65685566 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
65685514 GCGCAAATCT
*
65685524 ATCAAAAATA
1 ATCAAAATTA
*
65685534 GTCAAAATTA
1 ATCAAAATTA
65685544 ATCAAAATTA
1 ATCAAAATTA
65685554 AGTACAAAATTA
1 A-T-CAAAATTA
65685566 A
1 A
65685567 CTGAAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 18 0.64
11 1 0.04
12 9 0.32
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (10 bp):
ATCAAAATTA
Found at i:65685564 original size:22 final size:20
Alignment explanation
Indices: 65685524--65685566 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
65685514 GCGCAAATCT
65685524 ATCAAAAATAGTCAAAATTA
1 ATCAAAAATAGTCAAAATTA
*
65685544 ATCAAAATTAAGTACAAAATTA
1 ATCAAAAAT-AGT-CAAAATTA
65685566 A
1 A
65685567 CTGAAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 3 0.15
22 9 0.45
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (20 bp):
ATCAAAAATAGTCAAAATTA
Found at i:65690056 original size:15 final size:15
Alignment explanation
Indices: 65690036--65690071 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
65690026 ACCAACCTGT
65690036 AAGGTGACATCCCTA
1 AAGGTGACATCCCTA
65690051 AAGGTGACATCCCTA
1 AAGGTGACATCCCTA
65690066 AAGGTG
1 AAGGTG
65690072 TCTCGTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19
Consensus pattern (15 bp):
AAGGTGACATCCCTA
Found at i:65696851 original size:22 final size:21
Alignment explanation
Indices: 65696822--65696863 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
65696812 TGTCGAGAAT
65696822 AGTAAAAATTAA-TCAAAATTA
1 AGTAAAAATTAACT-AAAATTA
65696843 AGTACAAAATTAACTAAAATT
1 AGTA-AAAATTAACTAAAATT
65696864 CACCATGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 14 0.74
23 1 0.05
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.29
Consensus pattern (21 bp):
AGTAAAAATTAACTAAAATTA
Found at i:65698507 original size:47 final size:46
Alignment explanation
Indices: 65698438--65698748 Score: 213
Period size: 47 Copynumber: 6.7 Consensus size: 46
65698428 TTTGTGCGCC
* * *
65698438 AGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCT
* * *
65698484 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATC-TAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAT-TATGAGAGCT
* * * * * * * *
65698532 AGTGTATGACATGTCTGGGACATGCATCAGCCATACTGTAATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCT
* * * * *
65698578 AGTATAAGACATGTCTGGGACATACATCGGCCTCGA-CAGTGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTA-TGAGAGCT
* * * * *
65698625 AGTGTAAGACGTGTCTGGGACATACATTGGCTAAGAGTTAT----GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-CACA-TTATGAGAGCT
* * *
65698669 AGTGTAAGACATGTCTAGGACATGCATCAGCACACGTATATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-CACAT-TATGAGAGCT
*
65698717 AGTGTAAGACCATGTTTGGGACATAGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
65698749 TAATGTATCC
Statistics
Matches: 201, Mismatches: 46, Indels: 32
0.72 0.16 0.11
Matches are distributed among these distances:
43 1 0.00
44 33 0.16
46 46 0.23
47 68 0.34
48 34 0.17
49 13 0.06
50 6 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCT
Found at i:65702443 original size:40 final size:39
Alignment explanation
Indices: 65702350--65702444 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
65702340 ACCAACTCTG
* *
65702350 TCCAACCCAACACACC-ATGTGGGGATAAAATCGACCCA
1 TCCAACCCTACACACCAATATGGGGATAAAATCGACCCA
* * ** *
65702388 CCCATCCCTGTACACCAAATATGGGGATAAAATTGACCCA
1 TCCAACCCTACACACC-AATATGGGGATAAAATCGACCCA
65702428 TCCAACCCTACACACCA
1 TCCAACCCTACACACCA
65702445 TAAAGTACCG
Statistics
Matches: 44, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
38 11 0.25
39 1 0.02
40 32 0.73
ACGTcount: A:0.36, C:0.36, G:0.13, T:0.16
Consensus pattern (39 bp):
TCCAACCCTACACACCAATATGGGGATAAAATCGACCCA
Found at i:65704182 original size:56 final size:56
Alignment explanation
Indices: 65704023--65704187 Score: 233
Period size: 55 Copynumber: 3.0 Consensus size: 56
65704013 TCTTACATGT
* * *
65704023 AATCACATATCAATGCCAACGTACTAGACGTGGTCTTACTCGCACACATATATCAA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAA
* * ***
65704079 AATCACATATCGATGTCAAC-TATTAAACGTGGTCTTACTCGTACACATATATTGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAA
* *
65704134 AATCACATATCGATGCCAACGTATTAAACGTTGTCTTACTCACACACATATATC
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATC
65704188 GATGTCATGT
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
55 48 0.51
56 47 0.49
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAA
Found at i:65706687 original size:47 final size:47
Alignment explanation
Indices: 65706591--65706753 Score: 247
Period size: 47 Copynumber: 3.5 Consensus size: 47
65706581 ATTGACGGTT
**
65706591 AAGGATACCATGTAAGACCATGTTAAG-ACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
65706637 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
** * * *
65706684 AAGGATACCATGTAAGATAATGTTTGAAACATGACATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
*
65706731 AAGGATATCATGTAAGACCATGT
1 AAGGATACCATGTAAGACCATGT
65706754 CAAGGCATGG
Statistics
Matches: 106, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
46 25 0.24
47 81 0.76
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.26
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
Found at i:65706860 original size:55 final size:54
Alignment explanation
Indices: 65706739--65706927 Score: 238
Period size: 55 Copynumber: 3.5 Consensus size: 54
65706729 ATAAGGATAT
* * * * *
65706739 CATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTCTATAAGG-GAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGG-TAC
*
65706793 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGCAAAGGTAC
* * * * *
65706848 CATGTAATACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAAGATAC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
*
65706901 CATGTAAGACCATGTGAAGACATGGCA
1 CATGTAAGACCATGTCAAGACATGGCA
65706928 ATGGTAAGTT
Statistics
Matches: 117, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
53 36 0.31
54 36 0.31
55 41 0.35
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
Found at i:65706939 original size:53 final size:54
Alignment explanation
Indices: 65706734--65706938 Score: 241
Period size: 53 Copynumber: 3.8 Consensus size: 54
65706724 GTAAGATAAG
* * * *
65706734 GATATCATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTCTATAAGGGAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCAAA
* * *
65706788 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGCAAA
* * * * * * *
65706843 GGTCCCATGTAATACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCAAA
* * *
65706896 GATACCATGTAAGACCATGTGAAGACATGGCAATGGTAAGTTC
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTC
65706939 AAAAGGAAAA
Statistics
Matches: 129, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
53 45 0.35
54 40 0.31
55 44 0.34
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
GATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCAAA
Found at i:65710150 original size:40 final size:40
Alignment explanation
Indices: 65710014--65710194 Score: 215
Period size: 40 Copynumber: 4.5 Consensus size: 40
65710004 CGGATGTAAC
* *
65710014 AACCACCACGAATGCCTTCGGGACTTAACCTGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
65710054 AACCCA-CACGAATACCTTCGGGACTTAACCCGGTTATAAT
1 AA-CCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
65710094 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* ** * *
65710134 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
* *
65710174 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
65710195 ATCTTAGTCC
Statistics
Matches: 125, Mismatches: 10, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
39 7 0.06
40 112 0.90
41 6 0.05
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:65710195 original size:40 final size:40
Alignment explanation
Indices: 65710083--65710210 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 40
65710073 GGGACTTAAC
* ** * **
65710083 CCGGTTATAATAACCCGCACGAATGCCTTCGGGA-CTTAAC
1 CCGGATATAATAACTAGCACAAATGCCTTC-GGATCTTAGT
* *
65710123 CCGGTTATAATAACTAGCACAATTGCCTTCGGATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
*
65710163 CCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
*
65710203 CCAGATAT
1 CCGGATAT
65710211 CATCCGAATA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
Found at i:65714856 original size:40 final size:40
Alignment explanation
Indices: 65714720--65714900 Score: 224
Period size: 40 Copynumber: 4.5 Consensus size: 40
65714710 CGGATGTAAC
*
65714720 AACCACCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
65714760 AACCCA-CACGAATACCTTCGGGACTTAACCCGGTTATAAT
1 AA-CCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
65714800 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* ** * *
65714840 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
* *
65714880 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
65714901 ATCTTAGTCC
Statistics
Matches: 126, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
39 7 0.06
40 113 0.90
41 6 0.05
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:65714901 original size:40 final size:40
Alignment explanation
Indices: 65714789--65714916 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 40
65714779 GGGACTTAAC
* ** * **
65714789 CCGGTTATAATAACCCGCACGAATGCCTTCGGGA-CTTAAC
1 CCGGATATAATAACTAGCACAAATGCCTTC-GGATCTTAGT
* *
65714829 CCGGTTATAATAACTAGCACAATTGCCTTCGGATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
*
65714869 CCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
*
65714909 CCAGATAT
1 CCGGATAT
65714917 CATCCGAATA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
Found at i:65719514 original size:39 final size:39
Alignment explanation
Indices: 65719423--65719558 Score: 168
Period size: 40 Copynumber: 3.4 Consensus size: 39
65719413 TGTAACAACC
*
65719423 AGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACC
1 AGCACGAATGCCTTCGGGACTTAA-CCGGTTATAATAACT
*
65719463 CGCACGAATGCCTTCGGGACTTAACCGGTTATAATAACT
1 AGCACGAATGCCTTCGGGACTTAACCGGTTATAATAACT
* * *
65719502 AGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGTAACT
1 AGCACGAA-TGCCTTCGGGA-CTTA-ACCGGTTATAATAACT
*
65719542 AGCACAAATGCCTTCGG
1 AGCACGAATGCCTTCGG
65719559 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
38 5 0.06
39 29 0.34
40 48 0.56
41 3 0.04
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
AGCACGAATGCCTTCGGGACTTAACCGGTTATAATAACT
Found at i:65719559 original size:40 final size:40
Alignment explanation
Indices: 65719409--65719574 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
65719399 GAATTTGGCT
* * * * **
65719409 CGGATGTAACAACCAGCACGAATGCCTTCGGGACTTAACC
1 CGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGTC
* ** * *
65719449 CGGTTATAATAACCCGCACGAATGCCTTCGGGACTTA-AC
1 CGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGTC
* *
65719488 CGGTTATAATAACTAGCACAATTGCCTTC-GGATCTTAGTC
1 CGGATATAATAACTAGCACAAATGCCTTCGGGA-CTTAGTC
*
65719528 CGGATATAGTAACTAGCACAAATGCCTTC-GGATCTTAGTC
1 CGGATATAATAACTAGCACAAATGCCTTCGGGA-CTTAGTC
65719568 CGGATAT
1 CGGATAT
65719575 CATCCGAATA
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 3 0.03
39 30 0.27
40 78 0.70
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (40 bp):
CGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGTC
Found at i:65727607 original size:40 final size:40
Alignment explanation
Indices: 65727547--65727669 Score: 219
Period size: 40 Copynumber: 3.1 Consensus size: 40
65727537 CGGATGTAAC
*
65727547 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
65727587 AACCCGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
65727627 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTCTAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
65727667 AAC
1 AAC
65727670 TAGCACAATT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:65727683 original size:40 final size:40
Alignment explanation
Indices: 65727547--65727685 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
65727537 CGGATGTAAC
65727547 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
65727587 AACCCGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
65727627 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTCTAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
65727667 AACTAGCAC-AATTGCCTTC
1 AACCAGCACGAA-TGCCTTC
65727686 AGATCTTAGT
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.02
40 90 0.98
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:65727721 original size:80 final size:80
Alignment explanation
Indices: 65727537--65727727 Score: 206
Period size: 80 Copynumber: 2.4 Consensus size: 80
65727527 AAATTTGGCT
* * *
65727537 CGGATGTAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAATAC
1 CGGATATAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGCACGAATAC
*
65727602 CTTCGGGACTTAACC
66 CTTCGAGACTTAACC
* * * * *
65727617 CGGTTATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTCTAATAACTAGCAC-AATTG
1 CGGATATAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGCACGAA-TA
**
65727681 CCTTC-AGATCTTAGTC
65 CCTTCGAGA-CTTAACC
* * * * *
65727697 TGGATATAGTAACTAGCACAAATGCCCTCGG
1 CGGATATAATAACCAGCACGAATGCCTTCGG
65727728 ATCTTAGTCC
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
79 4 0.04
80 87 0.96
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (80 bp):
CGGATATAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGCACGAATAC
CTTCGAGACTTAACC
Found at i:65727743 original size:40 final size:40
Alignment explanation
Indices: 65727666--65727743 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
65727656 CCGGTTCTAA
* * **
65727666 TAACTAGCACAATTGCCTTCAGATCTTAGTCTGGATATAG
1 TAACTAGCACAAATGCCCTCAGATCTTAGTCCAGATATAG
*
65727706 TAACTAGCACAAATGCCCTCGGATCTTAGTCCAGATAT
1 TAACTAGCACAAATGCCCTCAGATCTTAGTCCAGATAT
65727744 CATCCGAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (40 bp):
TAACTAGCACAAATGCCCTCAGATCTTAGTCCAGATATAG
Found at i:65734117 original size:47 final size:47
Alignment explanation
Indices: 65734021--65734182 Score: 254
Period size: 47 Copynumber: 3.5 Consensus size: 47
65734011 ATTGACAGTT
*** *
65734021 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCATATGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
65734067 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
* *
65734114 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGCAAGAT
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
*
65734161 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
65734183 CCAAGGCATG
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 24 0.22
47 84 0.78
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.23
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
Found at i:65734290 original size:55 final size:54
Alignment explanation
Indices: 65734161--65734357 Score: 211
Period size: 54 Copynumber: 3.6 Consensus size: 54
65734151 TTGGCAAGAT
* * * *
65734161 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
65734215 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * * ** *
65734271 AAGG-TCCCATTTAAGACCATGGCAAGGTATGGCATTTG-TGGGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA-TTGATGAGTTCTATAAGGC
* *
65734323 AAGGATACCACGTAAGACTATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
65734358 ATGGTAAGTT
Statistics
Matches: 118, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
52 4 0.03
53 29 0.25
54 42 0.36
55 36 0.31
56 7 0.06
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:65739929 original size:16 final size:16
Alignment explanation
Indices: 65739910--65739940 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65739900 CTTCTTCACT
65739910 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
65739926 TACTTACTTACTTAA
1 TACTCACTTACTTAA
65739941 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:65739946 original size:20 final size:20
Alignment explanation
Indices: 65739907--65739946 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
65739897 AAACTTCTTC
* *
65739907 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
65739927 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
65739947 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:65740325 original size:107 final size:110
Alignment explanation
Indices: 65740184--65740380 Score: 294
Period size: 107 Copynumber: 1.8 Consensus size: 110
65740174 ATCCTTTTGA
* *
65740184 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG-GTAGCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTACCTTGCCTTA-GAAACCTCACCAA
65740246 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
65740291 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTACCTTGCCTTAGAAACCTCACCAAT
*
65740356 TTCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
65740381 CGGTATCCTT
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
107 36 0.46
108 12 0.15
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTACCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:65740338 original size:55 final size:53
Alignment explanation
Indices: 65740137--65740390 Score: 225
Period size: 55 Copynumber: 4.8 Consensus size: 53
65740127 ACACGGGTAC
* * * * *
65740137 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* * *
65740186 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
* * *
65740238 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * *
65740293 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
* * *
65740346 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
65740391 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 24, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
49 35 0.21
52 37 0.22
53 16 0.09
54 10 0.06
55 69 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:65747419 original size:16 final size:16
Alignment explanation
Indices: 65747400--65747430 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65747390 CTTCTTCACT
65747400 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
65747416 TACTTACTTACTTAA
1 TACTCACTTACTTAA
65747431 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:65747436 original size:20 final size:20
Alignment explanation
Indices: 65747397--65747436 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
65747387 AAACTTCTTC
* *
65747397 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
65747417 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
65747437 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:65747812 original size:55 final size:53
Alignment explanation
Indices: 65747669--65747813 Score: 200
Period size: 53 Copynumber: 2.7 Consensus size: 53
65747659 ATCCTTTTGA
* *
65747669 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCATTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCATTGCCTTATG
* * * * *
65747722 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCATTGCCTTAT-G
*
65747776 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATG
65747814 ATTTCCTTGC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 45 0.57
54 1 0.01
55 33 0.42
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.34
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCATTGCCTTATG
Found at i:65747813 original size:108 final size:110
Alignment explanation
Indices: 65747669--65747866 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
65747659 ATCCTTTTGA
* *
65747669 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCATTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCATTGCCTTA-GAAACCTCACCAA
65747732 -TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
* ** * *
65747777 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCATTGCCTTAGAAACCTCACCAAT
**
65747842 TTTCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
65747867 CGGTATCCTT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.60
109 7 0.09
110 23 0.29
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCATTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
Found at i:65747876 original size:55 final size:54
Alignment explanation
Indices: 65747622--65747876 Score: 240
Period size: 55 Copynumber: 4.8 Consensus size: 54
65747612 ACACGGGTAC
* * *
65747622 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * *
65747671 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTAGCATTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
65747724 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCC-T-TAGAAA
* * * *
65747779 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
** * *
65747832 CCTTACCAATTTTCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
65747877 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 28, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 38 0.23
52 2 0.01
53 45 0.27
54 12 0.07
55 70 0.42
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:65749637 original size:27 final size:27
Alignment explanation
Indices: 65749597--65749650 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
65749587 AGATACAACC
* *
65749597 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
65749624 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
65749651 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:65749755 original size:29 final size:29
Alignment explanation
Indices: 65749713--65749780 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
65749703 ACTTCTCCTA
*
65749713 AACAATT-AAATCATACAATTTATGCTAT
1 AACAATTGAAATCATACAATTTATGCCAT
65749741 AACAATTGAAATCATACAATTTATGCCAT
1 AACAATTGAAATCATACAATTTATGCCAT
*
65749770 AACAATAGAAA
1 AACAATTGAAA
65749781 ATTACAATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
28 7 0.19
29 30 0.81
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.29
Consensus pattern (29 bp):
AACAATTGAAATCATACAATTTATGCCAT
Found at i:65755532 original size:27 final size:27
Alignment explanation
Indices: 65755492--65755545 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
65755482 AGATACAACC
* *
65755492 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
65755519 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
65755546 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:65769728 original size:20 final size:20
Alignment explanation
Indices: 65769705--65769760 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
65769695 ACATGGTATA
65769705 TATGATATGCACATGACATG
1 TATGATATGCACATGACATG
*
65769725 TATGATATGCACATGATATG
1 TATGATATGCACATGACATG
65769745 TATGATATGCACATGA
1 TATGATATGCACATGA
65769761 GGTATTCATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
TATGATATGCACATGACATG
Found at i:65769742 original size:11 final size:11
Alignment explanation
Indices: 65769706--65769760 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
65769696 CATGGTATAT
65769706 ATGATATGCAC
1 ATGATATGCAC
* *
65769717 ATGACATG--T
1 ATGATATGCAC
65769726 ATGATATGCAC
1 ATGATATGCAC
*
65769737 ATGATATG--T
1 ATGATATGCAC
65769746 ATGATATGCAC
1 ATGATATGCAC
65769757 ATGA
1 ATGA
65769761 GGTATTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:65769838 original size:24 final size:24
Alignment explanation
Indices: 65769811--65769940 Score: 188
Period size: 24 Copynumber: 5.4 Consensus size: 24
65769801 GAGGAAGTGC
* *
65769811 AAAAGGGCTTATGCCTCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
65769835 AAAAGGGCTTTTGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
65769859 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
65769883 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
65769907 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
65769931 AAAAGAGGCT
1 AAAAG-GGCT
65769941 AGGCCTCAAG
Statistics
Matches: 97, Mismatches: 8, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
24 93 0.96
25 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:65770184 original size:31 final size:31
Alignment explanation
Indices: 65770149--65770212 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
65770139 CGTTTACAGT
*
65770149 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
65770180 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
65770211 AA
1 AA
65770213 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:65783990 original size:26 final size:26
Alignment explanation
Indices: 65783959--65784063 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
65783949 TGAAATGCCC
*
65783959 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
65783985 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
65784011 ATCATGGAATATTTACCTAATCGATT
1 ATCATGGAACATTTACCTAACCCATT
65784037 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
65784063 A
1 A
65784064 GCAATTTGTA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:65786824 original size:39 final size:39
Alignment explanation
Indices: 65786739--65787000 Score: 427
Period size: 39 Copynumber: 6.7 Consensus size: 39
65786729 TTCCAACACA
65786739 AATGCCTTCGGGACTTAGCCCGGATATAACA-CAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
65786777 AATACCTTCGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
65786816 AATGCCTTCGGGACTTAGCCCGGATATAACACTAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
65786855 AATGCCTTCGAGACTTAGCCTGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* * *
65786894 AATGCCTTCGGGACTTAGCCCGGACAAAACACCAGCAAG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* * *
65786933 AATGCCTTCGGGACTTAGCCCGGACATAACATCAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
65786972 AATGCCTTCGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
65787001 ATCTCACACA
Statistics
Matches: 207, Mismatches: 16, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
38 30 0.14
39 177 0.86
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:65789582 original size:56 final size:56
Alignment explanation
Indices: 65789496--65789615 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
65789486 ACAAGGGATG
65789496 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
65789552 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
65789608 ATGGGCAA
1 ATGGGCAA
65789616 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:65791544 original size:47 final size:47
Alignment explanation
Indices: 65791490--65791941 Score: 653
Period size: 47 Copynumber: 9.6 Consensus size: 47
65791480 TATTTGAATA
*
65791490 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65791537 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
65791584 AATGTGAACATGTGTATGTGTGATAAGGTCGAATGACCGATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65791631 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65791678 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65791727 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65791774 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65791821 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65791868 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65791915 GATGTGGAA-GTGTATAAATGTGATAAG
1 AATGT-GAACATGTATATATGTGATAAG
65791942 TCCCGAAGGG
Statistics
Matches: 372, Mismatches: 26, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
46 2 0.01
47 320 0.86
48 4 0.01
49 45 0.12
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:65791819 original size:22 final size:22
Alignment explanation
Indices: 65791792--65791913 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
65791782 CATGTGTATG
65791792 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
65791814 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
65791839 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
65791861 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
65791886 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
65791908 TGTGAT
1 TGTGAT
65791914 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:65791819 original size:190 final size:188
Alignment explanation
Indices: 65791490--65791920 Score: 729
Period size: 190 Copynumber: 2.3 Consensus size: 188
65791480 TATTTGAATA
*
65791490 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
*
65791555 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGTCGAATGA
66 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGA
* * *
65791620 CCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
131 CCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
**
65791678 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
* *
65791743 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAAT
64 TATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAAT
*
65791808 GGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
129 GACCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
*
65791868 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
65791921 GAAGTGTATA
Statistics
Matches: 229, Mismatches: 11, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
188 52 0.23
190 176 0.77
191 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (188 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGA
CCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
Found at i:65798866 original size:85 final size:85
Alignment explanation
Indices: 65798723--65798901 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
65798713 GGCCAGCCAT
65798723 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65798788 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
65798808 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
65798873 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
65798893 GGGCATGGG
1 GAGCATGGG
65798902 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:65800220 original size:47 final size:47
Alignment explanation
Indices: 65800166--65800807 Score: 929
Period size: 47 Copynumber: 13.6 Consensus size: 47
65800156 TATTTGAATA
*
65800166 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65800213 AATGTGAAAGTGTATATACATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATAT--ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65800262 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65800309 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65800356 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
65800405 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65800452 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65800501 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
65800548 AATGTGAACA-TGCATATA--TGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65800593 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65800640 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65800687 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65800734 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65800781 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
65800808 TCCCGAAGGG
Statistics
Matches: 561, Mismatches: 24, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
45 42 0.07
46 1 0.00
47 380 0.68
49 137 0.24
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:65800276 original size:96 final size:94
Alignment explanation
Indices: 65800166--65800807 Score: 929
Period size: 96 Copynumber: 6.8 Consensus size: 94
65800156 TATTTGAATA
*
65800166 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT-
* * *
65800231 CATGTGATAAGGCCTAATGACCGATGTGATG
65 -ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65800262 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
65800327 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
65800356 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
65800421 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
65800452 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
65800516 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
65800548 AATGTGAACA-TGCATATA--TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
65800609 TGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65800640 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
65800703 TATGAGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65800734 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
65800799 TGTGATAAG
66 TGTGATAAG
65800808 TCCCGAAGGG
Statistics
Matches: 513, Mismatches: 25, Indels: 18
0.92 0.04 0.03
Matches are distributed among these distances:
92 89 0.17
93 2 0.00
94 179 0.35
96 241 0.47
97 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:65800424 original size:143 final size:143
Alignment explanation
Indices: 65800166--65800807 Score: 923
Period size: 143 Copynumber: 4.5 Consensus size: 143
65800156 TATTTGAATA
*
65800166 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * * *
65800231 CATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGTGATAAGGCCGAA
* *
65800295 TAGCCGATGTGATG
130 TGGCCAATGTGATG
* *
65800309 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
65800374 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGTGATAAGGCCGAA
65800438 TGGCCAATGTGATG
130 TGGCCAATGTGATG
65800452 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--T
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
* *
65800514 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA--TGATAAGGCCG
63 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
65800577 AATGGCCAATGTGATG
128 AATGGCCAATGTGATG
* * *
65800593 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
* *
65800654 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGA
64 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
65800719 ATGGCCAATGTGATG
129 ATGGCCAATGTGATG
* *
65800734 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
65800798 -ATGTGATAAG
66 TATGTGATAAG
65800808 TCCCGAAGGG
Statistics
Matches: 466, Mismatches: 22, Indels: 24
0.91 0.04 0.05
Matches are distributed among these distances:
139 98 0.21
140 2 0.00
141 123 0.26
142 2 0.00
143 196 0.42
144 1 0.00
145 43 0.09
146 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAAT
GGCCAATGTGATG
Found at i:65800956 original size:77 final size:77
Alignment explanation
Indices: 65800829--65800976 Score: 287
Period size: 77 Copynumber: 1.9 Consensus size: 77
65800819 AATTGTGTCA
*
65800829 GTACTATATCCGGGTTAAAACCCCGCAGCCTTTATGTGAGAATATTATCCTGATTAATGTCCGTA
1 GTACTATATCCGGGTTAAAACCCCGCAGCCTTTATGCGAGAATATTATCCTGATTAATGTCCGTA
65800894 GGCTTCGTGCTC
66 GGCTTCGTGCTC
65800906 GTACTATATCCGGGTTAAAACCCCGCAGCCTTTATGCGAGAATATTATCCTGATTAATGTCCGTA
1 GTACTATATCCGGGTTAAAACCCCGCAGCCTTTATGCGAGAATATTATCCTGATTAATGTCCGTA
65800971 GGCTTC
66 GGCTTC
65800977 CAAGCTTTAA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 70 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (77 bp):
GTACTATATCCGGGTTAAAACCCCGCAGCCTTTATGCGAGAATATTATCCTGATTAATGTCCGTA
GGCTTCGTGCTC
Found at i:65808486 original size:29 final size:29
Alignment explanation
Indices: 65808446--65808511 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
65808436 CTGGCCCACT
* *
65808446 ATTAGGCCCAAATTACCTGTATATGGCCC
1 ATTAGGCCCAAATGACATGTATATGGCCC
*
65808475 ATTAGGCCCAAATGACATTTATATGGCCC
1 ATTAGGCCCAAATGACATGTATATGGCCC
*
65808504 GTTAGGCC
1 ATTAGGCC
65808512 TAGTCACATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (29 bp):
ATTAGGCCCAAATGACATGTATATGGCCC
Found at i:65811640 original size:10 final size:10
Alignment explanation
Indices: 65811621--65811680 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
65811611 TGAAATTCTA
65811621 AAAGATAAAT
1 AAAGATAAAT
65811631 ACAA-ATAAAT
1 A-AAGATAAAT
* *
65811641 AAATATAATT
1 AAAGATAAAT
65811651 AAAGATAAAT
1 AAAGATAAAT
65811661 AAAGATAAAT
1 AAAGATAAAT
65811671 GAAA-ATAAAT
1 -AAAGATAAAT
65811681 CCTAAAATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.05
10 37 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:65811655 original size:30 final size:30
Alignment explanation
Indices: 65811621--65811678 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
65811611 TGAAATTCTA
65811621 AAAGATAAATACAA-ATAAAT-AAATATAATT
1 AAAGATAAATA-AAGATAAATGAAA-ATAATT
65811651 AAAGATAAATAAAGATAAATGAAAATAA
1 AAAGATAAATAAAGATAAATGAAAATAA
65811679 ATCCTAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 2 0.08
30 21 0.81
31 3 0.12
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (30 bp):
AAAGATAAATAAAGATAAATGAAAATAATT
Found at i:65815149 original size:94 final size:91
Alignment explanation
Indices: 65814962--65815178 Score: 244
Period size: 94 Copynumber: 2.3 Consensus size: 91
65814952 GTGCCGATGC
* *
65814962 CATGTCCCAGACATGGTCTTACACTG-ACACATCTCATAGTCGATGCATGTCCTAGACATGTCTT
1 CATGTCCCAGACAT-GTCTTACACTGCACACATCTCATAGTCGACGCATGTCCCAGACATGTCTT
* * *
65815026 ACACTGGCTTACGTATCGAGGCCGATG
65 ACACTGACTTACATATCGAGGCCAATG
* *
65815053 CATGTCCCAAACATGTCTTACACTAGCACTCATCTCA-ATGTCGACGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACT-GCACACATCTCATA-GTCGACG-CATGTCCCAGACAT-GT
* *
65815117 GTTACACTGACTCT-CATAAT-GTGGCCAATG
62 CTTACACTGACT-TACAT-ATCGAGGCCAATG
*
65815147 CATGTCCGAGACATGTCTTACACTGGCACACA
1 CATGTCCCAGACATGTCTTACACT-GCACACA
65815179 AATAACCCAA
Statistics
Matches: 106, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
90 10 0.09
91 15 0.14
92 15 0.14
93 13 0.12
94 50 0.47
95 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTGCACACATCTCATAGTCGACGCATGTCCCAGACATGTCTTA
CACTGACTTACATATCGAGGCCAATG
Found at i:65836660 original size:93 final size:93
Alignment explanation
Indices: 65836528--65836700 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
65836518 CGCCCATAAG
* * *
65836528 CGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAGAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCAGAAGTGAACTCGGACTCAACTCA
*
65836593 ATGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * * * *
65836621 CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCAGAAGTGAACTCGGACTCAACTCA
*
65836686 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
65836701 CAAATATCCC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCAGAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:65839739 original size:48 final size:48
Alignment explanation
Indices: 65839681--65839772 Score: 157
Period size: 48 Copynumber: 1.9 Consensus size: 48
65839671 TTGATGTATA
* *
65839681 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGGATG
1 AGATATGTATATGTCGTAAAGCCGAATGACTAATGTGAAATATGGATG
*
65839729 AGATATGTATATGTCGTAAAGCCGAATGACTAGTGTGAAATATG
1 AGATATGTATATGTCGTAAAGCCGAATGACTAATGTGAAATATG
65839773 TAGGCGATGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (48 bp):
AGATATGTATATGTCGTAAAGCCGAATGACTAATGTGAAATATGGATG
Found at i:65840029 original size:37 final size:37
Alignment explanation
Indices: 65839921--65840029 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
65839911 GGAAATATAT
*
65839921 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65839958 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* **
65839995 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65840030 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65841342 original size:40 final size:40
Alignment explanation
Indices: 65841285--65841483 Score: 272
Period size: 40 Copynumber: 5.0 Consensus size: 40
65841275 GAGAGTTATA
* *
65841285 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
65841325 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * *
65841365 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
65841405 TATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
65841445 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
65841484 ATGTGTATTC
Statistics
Matches: 138, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:65841697 original size:25 final size:25
Alignment explanation
Indices: 65841647--65841697 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
65841637 TGTGTAACAA
* *
65841647 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
65841672 CAAATGATTAGAGGCACTCA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
65841697 C
1 C
65841698 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:65842183 original size:37 final size:37
Alignment explanation
Indices: 65842038--65842183 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
65842028 GGAAATATAT
* *
65842038 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
65842075 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
65842112 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
65842149 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65842184 CATCTGAGCT
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65849356 original size:53 final size:52
Alignment explanation
Indices: 65849277--65849381 Score: 201
Period size: 53 Copynumber: 2.0 Consensus size: 52
65849267 GGAAAAAGGC
65849277 GGTCAATGATAAAATGGATTCAATATTGTTTAACAATACTTAGATTCTAGTT
1 GGTCAATGATAAAATGGATTCAATATTGTTTAACAATACTTAGATTCTAGTT
65849329 GGTCAATGATAAAAATGGATTCAATATTGTTTAACAATACTTAGATTCTAGTT
1 GGTCAATGAT-AAAATGGATTCAATATTGTTTAACAATACTTAGATTCTAGTT
65849382 TATCTTCCTC
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 10 0.19
53 42 0.81
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (52 bp):
GGTCAATGATAAAATGGATTCAATATTGTTTAACAATACTTAGATTCTAGTT
Found at i:65850486 original size:46 final size:46
Alignment explanation
Indices: 65850428--65850599 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
65850418 GGGTTATTGT
* *
65850428 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATTAAGA
*
65850474 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG---GCATTAAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACATTAAGA
* * * **
65850519 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCCTC-AGC-C-TCGAGA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATTAAGA
*
65850565 CGTAAGTCAGTGTAAGACATGTCTGGGACATGCAT
1 -G--AGCCAGTGTAAGACATGTCTGGGACATGCAT
65850600 TAGCTACAAG
Statistics
Matches: 106, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
45 7 0.07
46 52 0.49
47 29 0.27
48 18 0.17
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATTAAGA
Found at i:65858160 original size:46 final size:45
Alignment explanation
Indices: 65858102--65858322 Score: 175
Period size: 46 Copynumber: 4.8 Consensus size: 45
65858092 GGGTTATTGT
* *
65858102 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTACATTATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCT-CATTA-GAC
*
65858148 GAGCCAGTGTAAGACCATGTCTGGGACACAGCATCGG--CATTAAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCTCATT-AGAC
* * * *
65858194 GAGTGCTAGTGTAAGAAATGTTTGGGACATGCCTCGGCCTCA--AGAC
1 GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTCATTAGAC
* * * *
65858240 GTAAGTCAGTGTAAGACATGTCTGGGACATGCATCGGAT-ACTAGAT
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCATTAGAC
* *
65858286 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
65858323 AAAAGATATG
Statistics
Matches: 144, Mismatches: 16, Indels: 30
0.76 0.08 0.16
Matches are distributed among these distances:
44 13 0.09
45 21 0.15
46 66 0.46
47 23 0.16
48 19 0.13
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCATTAGAC
Found at i:65863007 original size:55 final size:57
Alignment explanation
Indices: 65862910--65863038 Score: 156
Period size: 55 Copynumber: 2.3 Consensus size: 57
65862900 TTTCAAGTCC
* * * * * *
65862910 TTTTCATTTTTATTTTGGAGAAAATCACATTCATTTCTAAATG-TTCCA-TTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAATAAAAATCATGTCCAAATGTTTCCATTTCTCCA
*
65862965 TTTTCATTTTCATTTTGGA-AGAAATAAAAATCATGTCCAAATGTTTTCATTTCTCCA
1 TTTTCATTTTCATTTTGGAGA-AAATAAAAATCATGTCCAAATGTTTCCATTTCTCCA
65863022 TTTTCATTTTTCATTTT
1 TTTTCA-TTTTCATTTT
65863039 TGTCTATTTG
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
54 1 0.02
55 35 0.56
56 4 0.06
57 13 0.21
58 10 0.16
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.50
Consensus pattern (57 bp):
TTTTCATTTTCATTTTGGAGAAAATAAAAATCATGTCCAAATGTTTCCATTTCTCCA
Found at i:65864574 original size:20 final size:19
Alignment explanation
Indices: 65864545--65864586 Score: 75
Period size: 20 Copynumber: 2.2 Consensus size: 19
65864535 GAGGCAATGC
65864545 ACACGCCGTGTGCTTTGGG
1 ACACGCCGTGTGCTTTGGG
65864564 ACACGGCCGTGTGCTTTGGG
1 ACAC-GCCGTGTGCTTTGGG
65864584 ACA
1 ACA
65864587 TTCCCGTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.14, C:0.26, G:0.36, T:0.24
Consensus pattern (19 bp):
ACACGCCGTGTGCTTTGGG
Found at i:65864701 original size:28 final size:29
Alignment explanation
Indices: 65864653--65864708 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
65864643 ACAGGGGTTT
65864653 TCACACGACCGAGCACACGCCCGTGTCCC
1 TCACACGACCGAGCACACGCCCGTGTCCC
* *
65864682 TCACACGGCCTAG-ACACGCCCGTGTCC
1 TCACACGACCGAGCACACGCCCGTGTCC
65864709 AAAAACTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.20, C:0.46, G:0.21, T:0.12
Consensus pattern (29 bp):
TCACACGACCGAGCACACGCCCGTGTCCC
Found at i:65866126 original size:42 final size:43
Alignment explanation
Indices: 65866027--65866150 Score: 128
Period size: 42 Copynumber: 2.9 Consensus size: 43
65866017 GTTACATGAA
* *
65866027 TCACATCCACCATGAACCCAGA-CTCTCAACGAGCTCGTATGC
1 TCACATCCATCATGAACCCAGACCTCTCAACGAGCTCGGATGC
** * *
65866069 TTGCATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGC
1 TCACATCCATCATGAACCCAGACCTCTCAACGAGCTCGGATGC
* * * *
65866112 -CACATATC-TCATGAACCCGGACCACTCAACGAGTTCGGA
1 TCACAT-CCATCATGAACCCAGACCTCTCAACGAGCTCGGA
65866151 CTCCTTAGTT
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
42 46 0.70
43 20 0.30
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (43 bp):
TCACATCCATCATGAACCCAGACCTCTCAACGAGCTCGGATGC
Found at i:65866335 original size:25 final size:22
Alignment explanation
Indices: 65866307--65866360 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 22
65866297 AACAATCAAT
65866307 AAGCATATAATTCATAATTATAATA
1 AAGCAT-TAA-TCA-AATTATAATA
* *
65866332 AAGCATTTATCAAATTATATTA
1 AAGCATTAATCAAATTATAATA
65866354 AAGCATT
1 AAGCATT
65866361 TAAAACATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 16 0.59
23 3 0.11
24 2 0.07
25 6 0.22
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (22 bp):
AAGCATTAATCAAATTATAATA
Found at i:65867964 original size:34 final size:34
Alignment explanation
Indices: 65867920--65867994 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
65867910 TCCCAATGGG
* *
65867920 TTTTCTCTATTTTGTGTTTACTATCCTAGTGAAC
1 TTTTCTCTATTTTGTGTCTACTATCCCAGTGAAC
* * *
65867954 TTTTTTCTATTTTGTGTCTACTGTCCCAGTGGAC
1 TTTTCTCTATTTTGTGTCTACTATCCCAGTGAAC
65867988 -TTTCTCT
1 TTTTCTCT
65867995 GTGGATGTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
33 6 0.17
34 29 0.83
ACGTcount: A:0.13, C:0.20, G:0.13, T:0.53
Consensus pattern (34 bp):
TTTTCTCTATTTTGTGTCTACTATCCCAGTGAAC
Found at i:65877184 original size:43 final size:43
Alignment explanation
Indices: 65877115--65877270 Score: 240
Period size: 43 Copynumber: 3.6 Consensus size: 43
65877105 GCTGGTATTA
* **
65877115 TATTTGGGCCTTCGTGCCTAATAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
65877158 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
** * *
65877201 TATTCGGGCCTTCGCACCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
*
65877244 TATTCAGGCCTTCGTGCCTAGCAGGCT
1 TATTCGGGCCTTCGTGCCTAGCAGGCT
65877271 ATGATGCTGG
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.33
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
Found at i:65877300 original size:45 final size:43
Alignment explanation
Indices: 65877115--65877347 Score: 193
Period size: 43 Copynumber: 5.3 Consensus size: 43
65877105 GCTGGTATTA
* ** * **
65877115 TATTTGGGCCTTCGTGCCTAATAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTATGTGCCGGTGATGAC
* **
65877158 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTATGTGCCGGTGATGAC
** * **
65877201 TATTCGGGCCTTCGCACCTAGCAGGCT-TCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTAT-GTGCCGGTGATGAC
* *
65877244 TATTCAGGCCTTCGTGCCTAGCAGGCTATGATGCTGGTGGAAT-AC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTATG-TGCCGGT-G-ATGAC
* * * *
65877289 TATTCGGGCCTTTGAGCCTAGCATGCTATAATGCCGGTGA-GATAC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTAT-GTGCCGGTGATG--AC
*
65877334 TATTCGGGCTTTCG
1 TATTCGGGCCTTCG
65877348 AAATCGAGCC
Statistics
Matches: 160, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.01
43 104 0.65
44 7 0.04
45 46 0.29
46 2 0.01
ACGTcount: A:0.15, C:0.22, G:0.31, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTATGTGCCGGTGATGAC
Found at i:65880499 original size:46 final size:46
Alignment explanation
Indices: 65880370--65880511 Score: 203
Period size: 46 Copynumber: 3.0 Consensus size: 46
65880360 ATATATACAC
*
65880370 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT--AT
** * *
65880418 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT
* *
65880464 ATCTCATACATATTTTACATTAGTCATTCGGCTTTACCACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT
65880510 AT
1 AT
65880512 ATCTTGTACA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
46 44 0.53
48 39 0.47
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.39
Consensus pattern (46 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT
Found at i:65887118 original size:17 final size:17
Alignment explanation
Indices: 65887083--65887129 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
65887073 TTATTTTTAA
* *
65887083 TTTTATGTT-TTATAAT
1 TTTTATTTTATTAAAAT
65887099 TTTTATTTTATTAAAAT
1 TTTTATTTTATTAAAAT
*
65887116 TTTATATTTAATTA
1 TTT-TATTTTATTA
65887130 TCTTATTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 8 0.31
17 9 0.35
18 9 0.35
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTTATTTTATTAAAAT
Found at i:65887119 original size:16 final size:17
Alignment explanation
Indices: 65887067--65887130 Score: 51
Period size: 16 Copynumber: 3.8 Consensus size: 17
65887057 AAAATATATA
* * *
65887067 TTTATATTATTTTTAAT
1 TTTATTTTATTATAAAT
* *
65887084 TTTATGTT-TTATAATT
1 TTTATTTTATTATAAAT
65887100 TTTATTTTATTA-AAAT
1 TTTATTTTATTATAAAT
65887116 TTTATATTTAATTAT
1 TTTAT-TTT-ATTAT
65887131 CTTATTAACA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
16 20 0.54
17 13 0.35
18 4 0.11
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTATTTTATTATAAAT
Found at i:65887121 original size:25 final size:25
Alignment explanation
Indices: 65887090--65887161 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
65887080 TAATTTTATG
65887090 TTTTATAATTTTTATTTTATTAAAA
1 TTTTATAATTTTTATTTTATTAAAA
* *
65887115 TTTTAT-ATTTAATTATCTTATTAACA
1 TTTTATAATTT--TTATTTTATTAAAA
* * *
65887141 TTTTTTAATGTTTATTATATT
1 TTTTATAATTTTTATTTTATT
65887162 GCTATTATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
24 4 0.11
25 14 0.37
26 17 0.45
27 3 0.08
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (25 bp):
TTTTATAATTTTTATTTTATTAAAA
Found at i:65887129 original size:18 final size:17
Alignment explanation
Indices: 65887096--65887129 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
65887086 TATGTTTTAT
*
65887096 AATTTTTATTTTATTAA
1 AATTTTTATTTAATTAA
65887113 AATTTTATATTTAATTA
1 AATTTT-TATTTAATTA
65887130 TCTTATTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
AATTTTTATTTAATTAA
Found at i:65889049 original size:82 final size:83
Alignment explanation
Indices: 65888900--65889081 Score: 260
Period size: 82 Copynumber: 2.2 Consensus size: 83
65888890 TTTTGAAACT
* *
65888900 TCTAAATTCTAGCTTCAGTTCCTCATTATAGGATAAAACTTTAAATGTAATTCAATCTTTAAGTT
1 TCTAAATTCTAACTTCAGTTCCTCATTAAAGGATAAAACTTTAAATGTAATTCAATCTTTAAGTT
65888965 TCAATTCAACCTTAAAGC
66 TCAATTCAACCTTAAAGC
* * * * * *
65888983 TCTAAATTCTAACTTCGGTTCCTCATTAAAGG-TAAAATTTTCAACT-TAATTGACTCTTTTAGT
1 TCTAAATTCTAACTTCAGTTCCTCATTAAAGGATAAAACTTT-AAATGTAATTCAATCTTTAAGT
*
65889046 TTCAATTCCACCTTAAAGC
65 TTCAATTCAACCTTAAAGC
65889065 TCTAAATTCTAACTTCA
1 TCTAAATTCTAACTTCA
65889082 CTCTTTAAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
82 56 0.64
83 32 0.36
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.40
Consensus pattern (83 bp):
TCTAAATTCTAACTTCAGTTCCTCATTAAAGGATAAAACTTTAAATGTAATTCAATCTTTAAGTT
TCAATTCAACCTTAAAGC
Found at i:65889167 original size:117 final size:120
Alignment explanation
Indices: 65888978--65889195 Score: 291
Period size: 117 Copynumber: 1.8 Consensus size: 120
65888968 ATTCAACCTT
* * * *
65888978 AAAGCTCTAAATTCTAACTTCGGTTCCTCATTAAAGGTAAAATTTTCAACTTAATTGACTCTTTT
1 AAAGCTCTAAATTCTAAATTCAGCTCCTCATTAAAGG--AAATTTTCAAC-T-ATTGACTCTCTT
* *
65889043 AGTTTCAATTCCACCTTAAAGCTCTAAATTCTAACTTCACTCTTTAAGCTTACAACTATA
62 AGTTTCAAATCAACCTTAAAGCTCT-AATTCTAACTTCACTCTTTAAGCTTACAACTATA
*
65889103 AAAGCTCTAAATTGTAAATTCAGCTCCTCATTAAA-G-AATTTTCAA-T-TTGACTCTCTTAGTT
1 AAAGCTCTAAATTCTAAATTCAGCTCCTCATTAAAGGAAATTTTCAACTATTGACTCTCTTAGTT
*
65889164 TCAAATCAACCTTAAAGCTCTAATTGTAACTT
66 TCAAATCAACCTTAAAGCTCTAATTCTAACTT
65889196 GAGTTCCTCA
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
116 10 0.12
117 33 0.39
119 1 0.01
121 9 0.11
124 1 0.01
125 31 0.36
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (120 bp):
AAAGCTCTAAATTCTAAATTCAGCTCCTCATTAAAGGAAATTTTCAACTATTGACTCTCTTAGTT
TCAAATCAACCTTAAAGCTCTAATTCTAACTTCACTCTTTAAGCTTACAACTATA
Found at i:65889307 original size:84 final size:82
Alignment explanation
Indices: 65889149--65889347 Score: 231
Period size: 84 Copynumber: 2.4 Consensus size: 82
65889139 AATTTTCAAT
* * *
65889149 TTGACTCTCTTAGTTTCAAATCAACCTTAAAGCTCTAATTGTAACTTGAGTTCCTCATTAAAGGA
1 TTGACTCTCTTAGTTTC-AATCAACCTTAAAACTCTAATTATAACTTCAGTTCCTCATTAAAGGA
* *
65889214 TAATTAAATTTCCATTTAA
65 TAA-TAAATTTCAAGTTAA
* *
65889233 TTGACTCTTTTAGTTTCAATGCAACCTTAAAACTCTAAATTATAACACTTCAGTTCCTCTTTAAA
1 TTGACTCTCTTAGTTTCAAT-CAACCTTAAAACTCT-AATTAT-A-ACTTCAGTTCCTCATTAAA
65889298 GG-TAA-AAATTTCAAGTTAA
62 GGATAATAAATTTCAAGTTAA
* * *
65889317 TCGACTCTCTTATTTTTAATTCAACCTTAAA
1 TTGACTCTCTTAGTTTCAA-TCAACCTTAAA
65889348 GCTATCCAAC
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
83 3 0.03
84 67 0.68
85 6 0.06
86 4 0.04
87 19 0.19
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.40
Consensus pattern (82 bp):
TTGACTCTCTTAGTTTCAATCAACCTTAAAACTCTAATTATAACTTCAGTTCCTCATTAAAGGAT
AATAAATTTCAAGTTAA
Found at i:65893910 original size:43 final size:43
Alignment explanation
Indices: 65893804--65893938 Score: 198
Period size: 43 Copynumber: 3.1 Consensus size: 43
65893794 GGATTCCGAT
* * *
65893804 ATATGTGTTTTCGATTAAGACCACATCTGGGACGTTGGCATCG
1 ATATGTGTTTTTGAGTAAGACCACGTCTGGGACGTTGGCATCG
*
65893847 ATATATGTATTTTCGAGTAAGACCACGTCTGGGACGTTGGCATCG
1 ATATGTGT-TTTT-GAGTAAGACCACGTCTGGGACGTTGGCATCG
* *
65893892 ATATGTGTTTTTTAGTAAGACCACGTCTGGGACATTGGCATCG
1 ATATGTGTTTTTGAGTAAGACCACGTCTGGGACGTTGGCATCG
65893935 ATAT
1 ATAT
65893939 ATATGGTTAC
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
43 40 0.48
44 7 0.08
45 36 0.43
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
ATATGTGTTTTTGAGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:65893955 original size:88 final size:88
Alignment explanation
Indices: 65893804--65894024 Score: 236
Period size: 88 Copynumber: 2.5 Consensus size: 88
65893794 GGATTCCGAT
* * * * * * *
65893804 ATATGTGTTTTCGATTAAGACCACATCTGGGACGTTGGCATCGATATATGTATTTTCGAGTAAGA
1 ATATGTGTTTTCTAGTAAGACCACGTCTGGGACATTGGCATCGATATATATAGTTACGAGTAAGA
* *
65893869 CCACGTCTGGGACGTTGGCATCG
66 CCACGTCTGGGACATCGGCATCG
* *
65893892 ATATGTGTTTTTTAGTAAGACCACGTCTGGGACATTGGCATCGATATATATGGTTAC-ATGTAAG
1 ATATGTGTTTTCTAGTAAGACCACGTCTGGGACATTGGCATCGATATATATAGTTACGA-GTAAG
*
65893956 ACCATGTCTGGGACATCGGCATCG
65 ACCACGTCTGGGACATCGGCATCG
* * * *
65893980 -TACT-TGATTTGT-GTAAGAACC-TGTCTGGGACAATGGCATCGATAT
1 ATA-TGTGTTTTCTAGTAAG-ACCACGTCTGGGACATTGGCATCGATAT
65894025 GAGATAGCAT
Statistics
Matches: 114, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
86 27 0.24
87 12 0.11
88 75 0.66
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (88 bp):
ATATGTGTTTTCTAGTAAGACCACGTCTGGGACATTGGCATCGATATATATAGTTACGAGTAAGA
CCACGTCTGGGACATCGGCATCG
Found at i:65893967 original size:45 final size:44
Alignment explanation
Indices: 65893800--65893979 Score: 218
Period size: 45 Copynumber: 4.0 Consensus size: 44
65893790 AGTAGGATTC
* * *
65893800 CGATATATGTGTTTTCGATTAAGACCACATCTGGGACGTTGGCAT
1 CGATATATGTGTTTTC-AGTAAGACCACGTCTGGGACATTGGCAT
* *
65893845 CGATATATGTATTTTCGAGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATATGTGTTTTC-AGTAAGACCACGTCTGGGACATTGGCAT
* *
65893890 CGATATGTGT-TTTTTAGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATATGTGTTTTCAGTAAGACCACGTCTGGGACATTGGCAT
* * * * *
65893933 CGATATATATGGTTACATGTAAGACCATGTCTGGGACATCGGCAT
1 CGATATATGTGTTTTCA-GTAAGACCACGTCTGGGACATTGGCAT
65893978 CG
1 CG
65893980 TACTTGATTT
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 35 0.29
44 7 0.06
45 78 0.65
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
CGATATATGTGTTTTCAGTAAGACCACGTCTGGGACATTGGCAT
Found at i:65900827 original size:20 final size:19
Alignment explanation
Indices: 65900791--65900841 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
65900781 AAGGGTAATT
*
65900791 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
65900810 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
65900830 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
65900842 GTTGCTATGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:65901588 original size:48 final size:49
Alignment explanation
Indices: 65901534--65901653 Score: 131
Period size: 48 Copynumber: 2.5 Consensus size: 49
65901524 TGAGAGCCAT
* * ***
65901534 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGAG-ACGGGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAACACAAGCTAG
* * *
65901582 TGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATATACAAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA-ACACAAGCTAG
65901630 TGTAAGACC-TGTCTGGGACATGGC
1 TGTAAGACCATGTCTGGGACATGGC
65901654 GTCAACTTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
46 11 0.19
47 13 0.22
48 32 0.54
49 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAACACAAGCTAG
Found at i:65901730 original size:49 final size:49
Alignment explanation
Indices: 65901486--65901842 Score: 214
Period size: 49 Copynumber: 7.5 Consensus size: 49
65901476 TATGTGTGCT
* * * *
65901486 AGTGTAAGACATGTCTGGAACAT-GCATCGGCCAC--AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACACTGATAGATGAGAGCC
* ** * * * *
65901532 ATTGTAAGACCATGTCTGGGACATGGCATCGGTATTG--AGACGGGAGCT
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACACTGATAGATGAGAGCC
* * * * * * *
65901580 AGTGTAAGACATGTTTGGGACAT-GCATCGGC-CTCGAGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGA-GAGCC
* * * *
65901628 AGTGTAAGACCTGTCTGGGACATGGCGTC-A-ACT--T-GATGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCC
* *
65901672 AGTGTAAGACCTGTTTGGGACATGGCATCGACACTGATAAATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCC
* * * *
65901721 AGTGTAAGACCTGTCTGGGACAGGGCATC-AGC-CTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CACT-GATAGATGAGAGCC
**
65901770 AGTGTAAGACCTGTCTGGGACATGGCATC-AC-CTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC--TGATAGATGAGAGCC
*
65901817 AATGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
65901843 TGTCGGCATC
Statistics
Matches: 242, Mismatches: 47, Indels: 42
0.73 0.14 0.13
Matches are distributed among these distances:
44 30 0.12
45 2 0.01
46 20 0.08
47 39 0.16
48 69 0.29
49 81 0.33
50 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCC
Found at i:65901749 original size:142 final size:145
Alignment explanation
Indices: 65901528--65901842 Score: 385
Period size: 142 Copynumber: 2.2 Consensus size: 145
65901518 ACATTATGAG
* ** * * * * *
65901528 AGCCATTGTAAGACCATGTCTGGGACATGGCATCGGTATTG--AGACGGGAGCTAGTGTAAGACA
1 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGACACTGATAAATGAGAGCCAGTGTAAGACA
* * *
65901591 TGTTTGGGACATGCATCGGCCTCGAGATAT-ACAAG-CTAGTGTAAGACCTGTCTGGGACATGGC
66 TGTCTGGGACAGGCATCAGCCTCGAGATATGA-AAGTC-AGTGTAAGACCTGTCTGGGACATGGC
*
65901654 GTCAAC-TTGATGTG-T
129 ATCAACTTTGATGTGCT
* * * *
65901669 -GTCAGTGTAAGACC-TGTTTGGGACATGGCATCGACACTGATAAATGAGAGCCAGTGTAAGACC
1 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGACACTGATAAATGAGAGCCAGTGTAAGACA
*
65901732 TGTCTGGGACAGGGCATCAGCCTCGATATATGAAAGTCAGTGTAAGACCTGTCTGGGACATGGCA
66 TGTCTGGGACA-GGCATCAGCCTCGAGATATGAAAGTCAGTGTAAGACCTGTCTGGGACATGGCA
*
65901797 TCACCTTTGATGTGCT
130 TCAACTTTGATGTGCT
65901813 AGCCAATGTAAGACCATGTCTGGGACATGG
1 AGCCAATGTAAGACCATGTCTGGGACATGG
65901843 TGTCGGCATC
Statistics
Matches: 145, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
139 21 0.14
140 12 0.08
141 27 0.19
142 49 0.34
143 10 0.07
144 1 0.01
145 12 0.08
146 13 0.09
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (145 bp):
AGCCAATGTAAGACCATGTCTGGGACATGGCATCGACACTGATAAATGAGAGCCAGTGTAAGACA
TGTCTGGGACAGGCATCAGCCTCGAGATATGAAAGTCAGTGTAAGACCTGTCTGGGACATGGCAT
CAACTTTGATGTGCT
Found at i:65902849 original size:38 final size:38
Alignment explanation
Indices: 65902806--65902917 Score: 127
Period size: 39 Copynumber: 2.9 Consensus size: 38
65902796 AAAATTTATG
65902806 TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
1 TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
* * * *
65902844 TGGTATTATATCCGGACTTATAGT-CCGCAGGCCTAGTGC
1 TGGTATTATATCCGG-GTTA-AATCCCGCAGGCTTAATGC
* *
65902883 TGGTAATAGATATCCGGGTTAAATCCTGCAGGCTT
1 TGGT-AT-TATATCCGGGTTAAATCCCGCAGGCTT
65902918 TGTGCTAGAA
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
38 15 0.25
39 22 0.37
40 15 0.25
41 8 0.13
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
TGGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGC
Found at i:65905730 original size:209 final size:209
Alignment explanation
Indices: 65905369--65905770 Score: 732
Period size: 209 Copynumber: 1.9 Consensus size: 209
65905359 ACTAACCATG
* * *
65905369 AAGCTTACTCCCTCCTTTCCATTTCTTTTAGCTTGTCAGGTTAGCTCGGAGTTGGAGATCATCGG
1 AAGCTTACTCCCTCATTTCCATTTCTTTTAGCTTGTCAGGTTAGCTCAGAGTTGGAGATCATCCG
*
65905434 AGGCATCATTACACTATCAAGTCACTACCTTTGGAATAATGAAGCATATATTAGAAATTTCAAGT
66 AGGCATCATCACACTATCAAGTCACTACCTTTGGAATAATGAAGCATATATTAGAAATTTCAAGT
65905499 GAGTAGCATGTATAGAGATCTAGTTTTATGACATATGTTATTATGCTTTGGCCAAATGTATTGAC
131 GAGTAGCATGTATAGAGATCTAGTTTTATGACATATGTTATTATGCTTTGGCCAAATGTATTGAC
65905564 TTATATTGAGTTAT
196 TTATATTGAGTTAT
*
65905578 AAGCTTACTCCCTCATTTCCATTTCTTTTAGCTTGTCAGGTTAGCTCAGAGTTGGAGATCGTCCG
1 AAGCTTACTCCCTCATTTCCATTTCTTTTAGCTTGTCAGGTTAGCTCAGAGTTGGAGATCATCCG
65905643 AGGCATCATCACACTATCAAGTCACTACCTTTGGAATAATGAAGCATATATTAGAAATTTCAAGT
66 AGGCATCATCACACTATCAAGTCACTACCTTTGGAATAATGAAGCATATATTAGAAATTTCAAGT
* * *
65905708 GAGTGGCATGTATAGGGATCTAGTTTTATGACATGTGTTATTATGCTTTGGCCAAATGTATTG
131 GAGTAGCATGTATAGAGATCTAGTTTTATGACATATGTTATTATGCTTTGGCCAAATGTATTG
65905771 GCTTGTAAAC
Statistics
Matches: 185, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
209 185 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (209 bp):
AAGCTTACTCCCTCATTTCCATTTCTTTTAGCTTGTCAGGTTAGCTCAGAGTTGGAGATCATCCG
AGGCATCATCACACTATCAAGTCACTACCTTTGGAATAATGAAGCATATATTAGAAATTTCAAGT
GAGTAGCATGTATAGAGATCTAGTTTTATGACATATGTTATTATGCTTTGGCCAAATGTATTGAC
TTATATTGAGTTAT
Found at i:65908147 original size:29 final size:28
Alignment explanation
Indices: 65908115--65908171 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
65908105 GTGAGATAAA
65908115 CTGATTTGGCTTCAAGCCATGCATATCAG
1 CTGATTTGGCTTCAAGCCATG-ATATCAG
*
65908144 CTGATTTGGCTTCAGGCCATGATATCAG
1 CTGATTTGGCTTCAAGCCATGATATCAG
65908172 TATTTCGGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGATTTGGCTTCAAGCCATGATATCAG
Found at i:65910857 original size:22 final size:22
Alignment explanation
Indices: 65910820--65910910 Score: 101
Period size: 22 Copynumber: 4.0 Consensus size: 22
65910810 TTTCCTCGAG
*
65910820 GGCATTACAGAATATGCCACAAA
1 GGCATCACAG-ATATGCCACAAA
* *
65910843 GGCATCATAGATATGCCACGAA
1 GGCATCACAGATATGCCACAAA
* * * *
65910865 GGCATTACAAATATTCCACGAA
1 GGCATCACAGATATGCCACAAA
65910887 GGCATCACAGAATATGCCACAAA
1 GGCATCACAG-ATATGCCACAAA
65910910 G
1 G
65910911 TCATTATAGA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
22 37 0.66
23 19 0.34
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.18
Consensus pattern (22 bp):
GGCATCACAGATATGCCACAAA
Found at i:65910871 original size:45 final size:46
Alignment explanation
Indices: 65910820--65910923 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 46
65910810 TTTCCTCGAG
* *
65910820 GGCATTACAGAATATGCCACAAAGGCATCATAG-ATATGCCACGAA
1 GGCATTACAGAATATGCCACAAAGGCATCACAGAATATGCCACAAA
* *
65910865 GGCATTACA-AATATTCCACGAAGGCATCACAGAATATGCCACAAA
1 GGCATTACAGAATATGCCACAAAGGCATCACAGAATATGCCACAAA
* *
65910910 GTCATTATAGAATA
1 GGCATTACAGAATA
65910924 GATCTTATCG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
44 20 0.39
45 27 0.53
46 4 0.08
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.20
Consensus pattern (46 bp):
GGCATTACAGAATATGCCACAAAGGCATCACAGAATATGCCACAAA
Found at i:65912209 original size:19 final size:20
Alignment explanation
Indices: 65912182--65912228 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
65912172 GTTGGTAAAT
*
65912182 ACATGTGTA-ATAATAATAA
1 ACATATGTATATAATAATAA
*
65912201 ACATATGTATTTAATAATAA
1 ACATATGTATATAATAATAA
65912221 A-ATATGTA
1 ACATATGTA
65912229 GGCTTATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.36
Consensus pattern (20 bp):
ACATATGTATATAATAATAA
Found at i:65913060 original size:24 final size:24
Alignment explanation
Indices: 65913033--65913079 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
65913023 ATTGAAATGG
65913033 ATTG-ATTTAATATGTGA-TGAATTT
1 ATTGAATTT-ATAT-TGATTGAATTT
65913057 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
65913080 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 14 0.67
25 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:65918006 original size:20 final size:21
Alignment explanation
Indices: 65917983--65918021 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
65917973 ACAAGGGGGA
*
65917983 AAAGAAAGAAAGA-AAAAGAG
1 AAAGAAAAAAAGAGAAAAGAG
65918003 AAAGAAAAAAAGAGAAAAG
1 AAAGAAAAAAAGAGAAAAG
65918022 TTAGGGTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (21 bp):
AAAGAAAAAAAGAGAAAAGAG
Found at i:65918012 original size:14 final size:16
Alignment explanation
Indices: 65917985--65918019 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
65917975 AAGGGGGAAA
65917985 AGAAAGAAAGAAAAAG
1 AGAAAGAAAGAAAAAG
65918001 AGAAAG-AA-AAAAAG
1 AGAAAGAAAGAAAAAG
65918015 AGAAA
1 AGAAA
65918020 AGTTAGGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 6 0.32
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AGAAAGAAAGAAAAAG
Found at i:65918668 original size:24 final size:24
Alignment explanation
Indices: 65918641--65918687 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
65918631 ATTGAAATGG
65918641 ATTG-ATTTAATATGTGA-TGAATTT
1 ATTGAATTT-ATAT-TGATTGAATTT
65918665 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
65918688 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 14 0.67
25 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:65925783 original size:16 final size:18
Alignment explanation
Indices: 65925750--65925783 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
65925740 ATATCAACAA
65925750 GTCTTATCCTTACTTCTT
1 GTCTTATCCTTACTTCTT
65925768 GTCTT-TCCTT-CTTCTT
1 GTCTTATCCTTACTTCTT
65925784 ATACACCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 5 0.31
18 5 0.31
ACGTcount: A:0.06, C:0.29, G:0.06, T:0.59
Consensus pattern (18 bp):
GTCTTATCCTTACTTCTT
Found at i:65929375 original size:47 final size:47
Alignment explanation
Indices: 65929324--65929806 Score: 660
Period size: 47 Copynumber: 10.1 Consensus size: 47
65929314 TTAGGATTTT
* *
65929324 ATGTGATGGATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
65929371 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
65929418 ATGTGATGGATGTGAACATGCGTATGTGTGATAATGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *** *
65929465 ATCTGATGAATGTGAACCTGTATATATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
65929516 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *** *
65929563 ATGTGATGAATATGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
65929616 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
65929663 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* ** *
65929710 ATGTGATGAATGTGAACATGCATAAATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
65929757 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
65929804 ATG
1 ATG
65929807 CGAAACGTGT
Statistics
Matches: 389, Mismatches: 37, Indels: 20
0.87 0.08 0.04
Matches are distributed among these distances:
47 304 0.78
48 2 0.01
50 1 0.00
51 40 0.10
52 1 0.00
53 41 0.11
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:65929643 original size:23 final size:23
Alignment explanation
Indices: 65929616--65929690 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
65929606 CGAATGGCCA
65929616 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
65929639 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
65929663 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
65929686 ATGTG
1 ATGTG
65929691 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:65929846 original size:46 final size:46
Alignment explanation
Indices: 65929780--65929870 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
65929770 GAACATGAAT
* * *
65929780 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
65929826 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
65929871 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:65929883 original size:292 final size:291
Alignment explanation
Indices: 65929324--65929855 Score: 792
Period size: 292 Copynumber: 1.8 Consensus size: 291
65929314 TTAGGATTTT
* *
65929324 ATGTGATGGATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * ** * *
65929389 TGCGTATGTGTGATAAGACCGAATGGCCAATGTGATGGATGTGAACATGCGTATGTGTGATAATG
66 TGCGTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATGCATAAATGAGATAAGG
* *
65929454 CCGAATGGCCAATCTGATGAATGTGAACCTGTATATATATGTGTGATAAGGTCGAATGGCCAATG
131 CCGAATGGCCAATCTGATGAATGTGAACATGTATATATATGTGTGATAAGGCCGAATGGCCAATG
* * * *
65929519 TGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACCTGT
196 CGA-GAACGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATATGAACCTGT
65929584 ATATATATATGCGTGATAAGGCCGAATGGCCA
260 ATATATATATGCGTGATAAGGCCGAATGGCCA
65929616 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
65929681 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAAATGAGATAAGG
66 TGCGTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATGCATAAATGAGATAAGG
* *
65929746 CCGAATGGCCAATGTGATGAATGTGAACATG-A-ATATATGTG-G-TAAGGCCGAATGGCTAATG
131 CCGAATGGCCAATCTGATGAATGTGAACATGTATATATATGTGTGATAAGGCCGAATGGCCAATG
* *
65929807 CGA-AACGTGTATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
196 CGAGAACGTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
65929856 GATATGTATG
Statistics
Matches: 217, Mismatches: 19, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
286 5 0.02
287 20 0.09
288 21 0.10
289 11 0.05
290 9 0.04
291 1 0.00
292 150 0.69
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (291 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATGCATAAATGAGATAAGG
CCGAATGGCCAATCTGATGAATGTGAACATGTATATATATGTGTGATAAGGCCGAATGGCCAATG
CGAGAACGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATATGAACCTGTA
TATATATATGCGTGATAAGGCCGAATGGCCA
Found at i:65930070 original size:37 final size:37
Alignment explanation
Indices: 65930014--65930159 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
65930004 GGAAATATAT
*
65930014 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
65930051 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65930088 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
65930125 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65930160 CGTCTGAGCT
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65931613 original size:40 final size:40
Alignment explanation
Indices: 65931410--65931601 Score: 330
Period size: 40 Copynumber: 4.8 Consensus size: 40
65931400 GAGAATTGAG
* *
65931410 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
65931450 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
65931490 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
65931530 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
65931570 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
65931602 ATCATGCTGG
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:65934598 original size:47 final size:47
Alignment explanation
Indices: 65934547--65935029 Score: 705
Period size: 47 Copynumber: 10.1 Consensus size: 47
65934537 TTAGGATTTT
*
65934547 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
65934594 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
65934641 ATGTGATGGATGTGAACATGCGTATGTGTGATAATGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
65934688 ATGTGATGAATGTGAACCCGTATTTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
65934739 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
65934786 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
65934839 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
65934886 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
65934933 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
65934980 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
65935027 ATG
1 ATG
65935030 CGAAACGTGT
Statistics
Matches: 398, Mismatches: 28, Indels: 20
0.89 0.06 0.04
Matches are distributed among these distances:
47 310 0.78
48 1 0.00
49 2 0.01
51 42 0.11
52 1 0.00
53 42 0.11
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:65934743 original size:24 final size:24
Alignment explanation
Indices: 65934715--65934790 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
65934705 CCGTATTTAT
65934715 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
65934739 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
65934762 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
65934786 ATGTG
1 ATGTG
65934791 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:65934866 original size:23 final size:23
Alignment explanation
Indices: 65934839--65934913 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
65934829 CGAATGGCCA
65934839 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
65934862 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
65934886 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
65934909 ATGTG
1 ATGTG
65934914 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:65935069 original size:46 final size:46
Alignment explanation
Indices: 65935003--65935093 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
65934993 GAACATGAAT
* * *
65935003 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
65935049 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
65935094 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Done.