Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 213 of 325
Found at i:66264816 original size:26 final size:26
Alignment explanation
Indices: 66264785--66264892 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
66264775 TGAAATGCCC
*
66264785 ATCATGGAACATTTACTTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
66264811 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
66264837 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
66264863 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
66264889 ATCA
1 ATCA
66264893 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 2 0.03
26 73 0.97
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:66269529 original size:17 final size:18
Alignment explanation
Indices: 66269507--66269548 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
66269497 ATCAACTCAG
*
66269507 TAAAAAAATA-TAAATAA
1 TAAAAAAATATTAAACAA
*
66269524 T-AAAAAATATTTAACAA
1 TAAAAAAATATTAAACAA
66269541 TAAAAAAA
1 TAAAAAAA
66269549 AGAGCATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 8 0.38
17 7 0.33
18 6 0.29
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAAAAAATATTAAACAA
Found at i:66269530 original size:16 final size:17
Alignment explanation
Indices: 66269509--66269547 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
66269499 CAACTCAGTA
*
66269509 AAAAAATA-TAAATAAT
1 AAAAAATATTAAACAAT
*
66269525 AAAAAATATTTAACAAT
1 AAAAAATATTAAACAAT
66269542 AAAAAA
1 AAAAAA
66269548 AAGAGCATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAAAATATTAAACAAT
Found at i:66271619 original size:43 final size:44
Alignment explanation
Indices: 66271516--66271635 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 44
66271506 GTGTGAGTAG
* * *
66271516 TTTATCTGCACCATTGAGTGGTTTATCCACATCGTATTATCAGGT
1 TTTATCTGCACCAATGAGTGGTTTATCCACA-CATATTATCAGCT
* *
66271561 TTTATCTGCAACAATGAGTGGTTTATTCAC-CATATTAGT-AGCT
1 TTTATCTGCACCAATGAGTGGTTTATCCACACATATTA-TCAGCT
* * * *
66271604 TTTATATGCACCAATGAATAGTTAATCCACAC
1 TTTATCTGCACCAATGAGTGGTTTATCCACAC
66271636 CGTACTAAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
43 33 0.53
44 2 0.03
45 27 0.44
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (44 bp):
TTTATCTGCACCAATGAGTGGTTTATCCACACATATTATCAGCT
Found at i:66276642 original size:12 final size:12
Alignment explanation
Indices: 66276625--66276656 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
66276615 TTCATTTTTT
66276625 ACACGACCTATC
1 ACACGACCTATC
*
66276637 ACACGACCTGTC
1 ACACGACCTATC
66276649 ACACGACC
1 ACACGACC
66276657 ATGTAGGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.31, C:0.44, G:0.12, T:0.12
Consensus pattern (12 bp):
ACACGACCTATC
Found at i:66281684 original size:46 final size:45
Alignment explanation
Indices: 66281544--66281684 Score: 124
Period size: 46 Copynumber: 3.0 Consensus size: 45
66281534 GCCCATAAGC
* * * *
66281544 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCCAGT
* * * *
66281591 GAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--CAGT
* *
66281637 GAACTCGGACTCAACTCAACGAGTTCGAATGCCCAAATATCCCAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCCAGT
66281683 GA
1 GA
66281685 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 36 0.48
47 30 0.40
48 4 0.05
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCCAGT
Found at i:66286829 original size:24 final size:24
Alignment explanation
Indices: 66286802--66286853 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
66286792 TTAGTAAGTC
*
66286802 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
66286826 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
66286850 AAAT
1 AAAT
66286854 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:66288786 original size:24 final size:24
Alignment explanation
Indices: 66288759--66288810 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
66288749 TTAGTAAGTC
*
66288759 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
66288783 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
66288807 AAAT
1 AAAT
66288811 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:66291773 original size:26 final size:24
Alignment explanation
Indices: 66291742--66291789 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
66291732 AAATAAAAAT
*
66291742 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
66291768 TTTAAAAACATAAAAACAAATA
1 TTTAAAAACATAAAAACAAATA
66291790 AAAATGATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:66291931 original size:6 final size:6
Alignment explanation
Indices: 66291912--66291944 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
66291902 TATATAATTC
66291912 GGGCC- GGG-CT GGGCCT GGGCCT GGGCCT GGGCC
1 GGGCCT GGGCCT GGGCCT GGGCCT GGGCCT GGGCC
66291945 AAAAAATCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 1 0.04
5 6 0.23
6 19 0.73
ACGTcount: A:0.00, C:0.33, G:0.55, T:0.12
Consensus pattern (6 bp):
GGGCCT
Found at i:66293616 original size:6 final size:6
Alignment explanation
Indices: 66293605--66293631 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
66293595 ATGTACTAAA
66293605 TTGATG TTGATG TTGATG TTGATG TTG
1 TTGATG TTGATG TTGATG TTGATG TTG
66293632 GTATAATTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.52
Consensus pattern (6 bp):
TTGATG
Found at i:66301008 original size:3 final size:3
Alignment explanation
Indices: 66301002--66301036 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
66300992 TTTCCTCCTT
*
66301002 TTC TTC TTC TTC TTC TTC TTC TTC TTA TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
66301037 GGAAGACCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:66302056 original size:15 final size:16
Alignment explanation
Indices: 66302027--66302060 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
66302017 GAAATTACTT
66302027 TAAAAATAATAATTAA
1 TAAAAATAATAATTAA
*
66302043 TAAAAATAA-GATTAA
1 TAAAAATAATAATTAA
66302058 TAA
1 TAA
66302061 TTTTGTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
TAAAAATAATAATTAA
Found at i:66302555 original size:25 final size:24
Alignment explanation
Indices: 66302524--66302579 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
66302514 TTACTCTCAA
66302524 AGAGATACAAATGAGCAAACAAAGAT
1 AGAGATACAAATGAGCAAA-AAA-AT
**
66302550 -GAGATACACTTGAGCAAAAAAAT
1 AGAGATACAAATGAGCAAAAAAAT
66302573 AGAGATA
1 AGAGATA
66302580 AAGCTCGCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 9 0.33
25 16 0.59
ACGTcount: A:0.55, C:0.11, G:0.20, T:0.14
Consensus pattern (24 bp):
AGAGATACAAATGAGCAAAAAAAT
Found at i:66306949 original size:21 final size:21
Alignment explanation
Indices: 66306923--66306963 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
66306913 ATCTGCTCAA
* *
66306923 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
66306944 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
66306964 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:66311764 original size:31 final size:31
Alignment explanation
Indices: 66311724--66311793 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
66311714 ATTTTGGGTT
* *
66311724 TTTTTACATTGAAA-TTAAAATTAAGTAATTG
1 TTTTCACATT-AAAGTTAAAATTAAGTAATTA
* *
66311755 TTTTCACATTAAAGTTTAAATTAGGTAATTA
1 TTTTCACATTAAAGTTAAAATTAAGTAATTA
*
66311786 TTCTCACA
1 TTTTCACA
66311794 ATTGGGTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 3 0.09
31 30 0.91
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.44
Consensus pattern (31 bp):
TTTTCACATTAAAGTTAAAATTAAGTAATTA
Found at i:66312732 original size:16 final size:17
Alignment explanation
Indices: 66312705--66312745 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
66312695 TGCCCGAGTT
66312705 TTTTAGGG-TTAA-AGA
1 TTTTAGGGTTTAATAGA
*
66312720 TTTTAGGGTTTAATTGA
1 TTTTAGGGTTTAATAGA
66312737 -TTTAGGGTT
1 TTTTAGGGTT
66312746 AGGATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 8 0.35
16 13 0.57
17 2 0.09
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (17 bp):
TTTTAGGGTTTAATAGA
Found at i:66312919 original size:20 final size:19
Alignment explanation
Indices: 66312854--66312924 Score: 85
Period size: 20 Copynumber: 3.8 Consensus size: 19
66312844 AGTTTAGGGT
*
66312854 ATTAGGGTTAATTGATTAA
1 ATTAAGGTTAATTGATTAA
*
66312873 ATT-AGG--GATTGATTAA
1 ATTAAGGTTAATTGATTAA
*
66312889 ATTAAGTTTAATTGATTAA
1 ATTAAGGTTAATTGATTAA
66312908 ACTTAAGGTTAATTGAT
1 A-TTAAGGTTAATTGAT
66312925 ACATAGTCGT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
16 12 0.28
17 2 0.05
18 2 0.05
19 13 0.30
20 14 0.33
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.42
Consensus pattern (19 bp):
ATTAAGGTTAATTGATTAA
Found at i:66313691 original size:125 final size:126
Alignment explanation
Indices: 66313455--66313955 Score: 792
Period size: 125 Copynumber: 4.0 Consensus size: 126
66313445 CTACAAGAAC
* *
66313455 AATTTTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAATGCTTCAAGCAGGATACACTGTCAGC
1 AATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATACACTGTCAGC
* * *
66313520 AAAATTTCTGAAAAAAGCTCCCATGTGGATGCTCTTTTGCTA-AGTAGTTCGTAGAAAAAT
66 AAAATTTTTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAAT
* *
66313580 AATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTC-AGTAGGATACACTGTTAGC
1 AATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATACACTGTCAGC
*
66313644 AAAATTTTTGAAAAAAGCTCCCACGTGGACGCTATTTTGCTACAGTAGTTCGTAGAAAAAT
66 AAAATTTTTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAAT
** * * * * *
66313705 AATTCTGAGTAGATATTTCTAAATAAATAGTGTCAAAAACGCTTCAAGCAAGATGCACTGTCAGC
1 AATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATACACTGTCAGC
* * *
66313770 AAAATTTTTG-AAAAAGCTCCCATGTGGACACTCTTTTGCTACAATAGTTCGTAGAAAAAT
66 AAAATTTTTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAAT
* *
66313830 AATTCTGAGTAGCCGTTTCTGAACAAATAGTCTCGAAAACGCTTCAAGCAGGATACACTGTCAGC
1 AATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATACACTGTCAGC
*
66313895 AAAATTTTTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTATAGTAGTTCGTAGAAAAAT
66 AAAATTTTTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAAT
66313956 GAGGCTATAA
Statistics
Matches: 339, Mismatches: 34, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
124 55 0.16
125 213 0.63
126 71 0.21
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (126 bp):
AATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATACACTGTCAGC
AAAATTTTTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAAAAT
Found at i:66317204 original size:21 final size:21
Alignment explanation
Indices: 66317166--66317205 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
66317156 TGGATCAGCT
* * *
66317166 TCCGGCGGGGGTTGTGGTTTC
1 TCCGGCAGGGGATCTGGTTTC
66317187 TCCGGCAGGGGATCTGGTT
1 TCCGGCAGGGGATCTGGTT
66317206 GTGGGTGTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.05, C:0.20, G:0.45, T:0.30
Consensus pattern (21 bp):
TCCGGCAGGGGATCTGGTTTC
Found at i:66318101 original size:7 final size:7
Alignment explanation
Indices: 66318091--66318130 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
66318081 CATAATACAT
66318091 AATACTA
1 AATACTA
66318098 AATACTA
1 AATACTA
66318105 AATACTA
1 AATACTA
*
66318112 AATGCTA
1 AATACTA
66318119 AATACTA
1 AATACTA
66318126 AATAC
1 AATAC
66318131 GAAACGACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.55, C:0.15, G:0.03, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:66319197 original size:48 final size:46
Alignment explanation
Indices: 66319112--66319244 Score: 160
Period size: 47 Copynumber: 2.8 Consensus size: 46
66319102 ATACAAACAT
* ** *
66319112 CATAAATGAAAAAAAATCAAGCAATATTGAAATTTTAATTATAA-TTG
1 CATAAATGAAAAAATATCAAATAGTATTGAAA-TTTAATTA-AATTTG
66319159 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAA-AAAATATCAAATAGTATTG-AAATTTAATTAAATTTG
* *
66319207 CATAAATTAAAAAATATCTAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAATATCAAATAGTATTG-AAATTTAA
66319245 AATTATTACT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
47 38 0.50
48 35 0.46
49 3 0.04
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.34
Consensus pattern (46 bp):
CATAAATGAAAAAATATCAAATAGTATTGAAATTTAATTAAATTTG
Found at i:66319394 original size:11 final size:11
Alignment explanation
Indices: 66319378--66319430 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
66319368 TTTTAAACAA
66319378 AGAATTTTGAT
1 AGAATTTTGAT
*
66319389 AGAATTTTGAG
1 AGAATTTTGAT
* *
66319400 AAAAATTTGAT
1 AGAATTTTGAT
*
66319411 -GAAATTTGAT
1 AGAATTTTGAT
*
66319421 AGATTTTTGA
1 AGAATTTTGA
66319431 AGGGAATATT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
10 9 0.26
11 25 0.74
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.42
Consensus pattern (11 bp):
AGAATTTTGAT
Found at i:66320367 original size:24 final size:24
Alignment explanation
Indices: 66320340--66320409 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
66320330 ATGTTCAACA
*
66320340 TTTCCTCTTCCTTAAC-CTTTCACC
1 TTTCATCTTCCTTAACTCTTT-ACC
*
66320364 TTTCATCTTCCTTAACTCTTTATC
1 TTTCATCTTCCTTAACTCTTTACC
*
66320388 TTTCATCTTCTTGTAACTCTTT
1 TTTCATCTTCCT-TAACTCTTT
66320410 TGTTATTTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 28 0.68
25 13 0.32
ACGTcount: A:0.14, C:0.31, G:0.01, T:0.53
Consensus pattern (24 bp):
TTTCATCTTCCTTAACTCTTTACC
Found at i:66326990 original size:22 final size:22
Alignment explanation
Indices: 66326965--66327009 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
66326955 TCAAGTATGT
*
66326965 GCTCAATGCACTCATTGTCTTG
1 GCTCAATGCACTCATTGTATTG
66326987 GCTCAATGCACTCATTGTATTG
1 GCTCAATGCACTCATTGTATTG
66327009 G
1 G
66327010 TAATAGTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (22 bp):
GCTCAATGCACTCATTGTATTG
Found at i:66329059 original size:29 final size:27
Alignment explanation
Indices: 66329041--66329110 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
66329031 ATATTAAGTC
66329041 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
66329068 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
66329096 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
66329111 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:66329104 original size:28 final size:28
Alignment explanation
Indices: 66329041--66329138 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
66329031 ATATTAAGTC
*
66329041 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
66329068 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
66329096 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
66329125 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66329139 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:66339013 original size:39 final size:40
Alignment explanation
Indices: 66338919--66339100 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
66338909 ATGAATGCTG
* * * **
66338919 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGA-CCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
** *
66338957 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
66338998 TCCGGGTTAAGT-CCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
66339037 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
66339077 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
66339101 GAATGAGTTA
Statistics
Matches: 119, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 52 0.44
40 65 0.55
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:66339054 original size:79 final size:80
Alignment explanation
Indices: 66338919--66339097 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
66338909 ATGAATGCTG
* * * *
66338919 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAGTGACCATATCCGGACTAAGATCCGAAGGTATTT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
*
66338983 GTGCGAGTTATT-AAT
66 GTGCGAGTT-TTAAAA
**
66338998 TCCGGGTTAAGT-CCGAAGGCCTTTGTGCGAGAT-ACCA-ATTCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG-TGACCATA-TCCGGACTAAGAT-CCGAAGGCA
66339059 TTCGTGCGAGTTTTAAAA
63 TTCGTGCGAGTTTTAAAA
66339077 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
66339098 ATTGAATGAG
Statistics
Matches: 87, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 11 0.13
79 67 0.77
80 9 0.10
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTTTAAAA
Found at i:66339121 original size:39 final size:39
Alignment explanation
Indices: 66339037--66339147 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 39
66339027 AGATACCAAT
** *
66339037 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
66339077 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
66339117 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
66339148 GAGCTATATC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
39 25 0.42
40 35 0.58
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:66400019 original size:40 final size:40
Alignment explanation
Indices: 66399960--66400051 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
66399950 GATATCTCGT
* *
66399960 ACACTAAGTGTCATATATAGACGAAGCTATCTCAAATCAC
1 ACACTAAGTGCCATATATAGACGAAGCAATCTCAAATCAC
* * *
66400000 ACACTAAGTGCCATCTATAGCCGAAGCAATGTCAAATCAC
1 ACACTAAGTGCCATATATAGACGAAGCAATCTCAAATCAC
66400040 ACACTAAGTGCC
1 ACACTAAGTGCC
66400052 TTGTACGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (40 bp):
ACACTAAGTGCCATATATAGACGAAGCAATCTCAAATCAC
Found at i:66402669 original size:49 final size:49
Alignment explanation
Indices: 66402615--66402841 Score: 283
Period size: 49 Copynumber: 4.6 Consensus size: 49
66402605 CTGGTACGCA
* * *
66402615 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
*
66402664 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
** * *
66402713 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGGTACACG
* * * * * * *
66402763 TAGTAGCCTGCACTTAGTACTATACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAATTATCCGGTACACG
*
66402814 TAGTAGTCTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
66402842 CAACCTCACA
Statistics
Matches: 153, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
49 77 0.50
50 41 0.27
51 34 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:66402835 original size:101 final size:98
Alignment explanation
Indices: 66402602--66402842 Score: 320
Period size: 98 Copynumber: 2.4 Consensus size: 98
66402592 TAGCCAAAGC
* * ** * *
66402602 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACATGTAG
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACCATCCGATACACGTAG
66402667 TAGCCTGCACTTAGTACTACACACGTGACCAAT
66 TAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
66402700 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACCATCCGATACACGTA
* *
66402765 GTAGCCTGCACTTAGTACTATACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * *
66402801 TTTCGGGTACGCATAGTAGTCTGCACTTAGTACTACACATGC
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
66402843 AACCTCACAA
Statistics
Matches: 122, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 41 0.34
99 41 0.34
100 1 0.01
101 39 0.32
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (98 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:66412512 original size:18 final size:18
Alignment explanation
Indices: 66412489--66412523 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
66412479 CCGAAATTAG
66412489 ATTTGTGGTCCCAAAACA
1 ATTTGTGGTCCCAAAACA
*
66412507 ATTTGTGGTCTCAAAAC
1 ATTTGTGGTCCCAAAAC
66412524 TACTGTTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (18 bp):
ATTTGTGGTCCCAAAACA
Found at i:66412911 original size:2 final size:2
Alignment explanation
Indices: 66412904--66412931 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
66412894 AATGTATTAA
66412904 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66412932 TACATTTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66413431 original size:28 final size:28
Alignment explanation
Indices: 66413391--66413444 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
66413381 GATAACGTGT
* * *
66413391 TATAAAATTAAAAGAAGTATAGAATGAA
1 TATAAAACTAAAAGAAATATAAAATGAA
66413419 TATAAAACTAAAAGAAATATAAAATG
1 TATAAAACTAAAAGAAATATAAAATG
66413445 GACAAGAGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.63, C:0.02, G:0.11, T:0.24
Consensus pattern (28 bp):
TATAAAACTAAAAGAAATATAAAATGAA
Found at i:66420096 original size:37 final size:37
Alignment explanation
Indices: 66420046--66420230 Score: 192
Period size: 37 Copynumber: 5.0 Consensus size: 37
66420036 ATACTCCCTG
*
66420046 ATTTGGCA-TGTTATCGAATGGATTAGCTCTTATGAGC
1 ATTTGG-AGTGTTATCGGATGGATTAGCTCTTATGAGC
* *
66420083 ATTTGGTGTGTTATCGGATGGATTAGCTCTTATGAGT
1 ATTTGGAGTGTTATCGGATGGATTAGCTCTTATGAGC
* * * *
66420120 ATTTGGCGTATTATTGGATGGATTAGCTCCTATGAGC
1 ATTTGGAGTGTTATCGGATGGATTAGCTCTTATGAGC
* * * * *
66420157 ATTTAGAATGTTATCGGGTGGATTAGTTCTTATGAAC
1 ATTTGGAGTGTTATCGGATGGATTAGCTCTTATGAGC
** * * * *
66420194 ATTTGGCCTGTTATAGGTTGGATTAACTCTTACGAGC
1 ATTTGGAGTGTTATCGGATGGATTAGCTCTTATGAGC
66420231 GGTTGGCATG
Statistics
Matches: 121, Mismatches: 26, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
37 121 1.00
ACGTcount: A:0.23, C:0.12, G:0.26, T:0.39
Consensus pattern (37 bp):
ATTTGGAGTGTTATCGGATGGATTAGCTCTTATGAGC
Found at i:66420242 original size:74 final size:74
Alignment explanation
Indices: 66420046--66420254 Score: 222
Period size: 74 Copynumber: 2.8 Consensus size: 74
66420036 ATACTCCCTG
* * **
66420046 ATTTGGCATGTTATCGAATGGATTAGCTCTTATGAGCATTTGGTGTGTTATCGGATGGATTAGCT
1 ATTTGGCATGTTATAGGATGGATTAGCTCTTATGAGCATTTGGAATGTTATCGGATGGATTAGCT
**
66420111 CTTATGAGT
66 CTTATGAAC
* * * * * * *
66420120 ATTTGGCGTATTATTGGATGGATTAGCTCCTATGAGCATTTAGAATGTTATCGGGTGGATTAGTT
1 ATTTGGCATGTTATAGGATGGATTAGCTCTTATGAGCATTTGGAATGTTATCGGATGGATTAGCT
66420185 CTTATGAAC
66 CTTATGAAC
* * * * ** * *
66420194 ATTTGGCCTGTTATAGGTTGGATTAACTCTTACGAGCGGTTGGCATGTT-TCGGTTGGATTA
1 ATTTGGCATGTTATAGGATGGATTAGCTCTTATGAGCATTTGGAATGTTATCGGATGGATTA
66420255 TTTGTGTACT
Statistics
Matches: 111, Mismatches: 24, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
73 11 0.10
74 100 0.90
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.40
Consensus pattern (74 bp):
ATTTGGCATGTTATAGGATGGATTAGCTCTTATGAGCATTTGGAATGTTATCGGATGGATTAGCT
CTTATGAAC
Found at i:66423996 original size:17 final size:19
Alignment explanation
Indices: 66423958--66423998 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
66423948 TACCTTGCCA
66423958 TCCTCACTTCTCAAATCAT
1 TCCTCACTTCTCAAATCAT
*
66423977 TCCTCATTTCTC-AA-CAT
1 TCCTCACTTCTCAAATCAT
66423994 TCCTC
1 TCCTC
66423999 TCACTCGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 2 0.10
19 11 0.52
ACGTcount: A:0.22, C:0.39, G:0.00, T:0.39
Consensus pattern (19 bp):
TCCTCACTTCTCAAATCAT
Found at i:66427008 original size:44 final size:44
Alignment explanation
Indices: 66426917--66427008 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
66426907 CCTAAGTAAC
* * * *
66426917 AGTAACAGTACGACACACATGGTGCCTCATTGACTTGAAGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTTCAAGTCAA
* **
66426961 AGTAGCAGTACGACACTTATAGTGCCTCATCGAC-TCAAGGTCAA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTTCAA-GTCAA
66427005 AGTA
1 AGTA
66427009 TCCATAAACA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 3 0.08
44 37 0.93
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTTCAAGTCAA
Found at i:66427883 original size:10 final size:10
Alignment explanation
Indices: 66427853--66427892 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
66427843 CTCTGTTCTT
66427853 TTTCTATTTTA
1 TTTC-ATTTTA
66427864 TTTC--TTTA
1 TTTCATTTTA
66427872 TTTCATTTTA
1 TTTCATTTTA
66427882 TTTCATTTTA
1 TTTCATTTTA
66427892 T
1 T
66427893 GTTTAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.30
10 15 0.56
11 4 0.15
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTCATTTTA
Found at i:66427940 original size:20 final size:19
Alignment explanation
Indices: 66427907--66427945 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
66427897 AATTTTATTA
66427907 TATTATTATATTAACATAAT
1 TATTATTATATTAA-ATAAT
66427927 TATTATTA-ACTTAAATAAT
1 TATTATTATA-TTAAATAAT
66427946 AAGTAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
TATTATTATATTAAATAAT
Found at i:66433609 original size:23 final size:24
Alignment explanation
Indices: 66433564--66433609 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
66433554 CCTGTTACAT
*
66433564 GGCTCTTTGTGAGTATTCCTGATA
1 GGCTCTTCGTGAGTATTCCTGATA
*
66433588 GGCTCTTCGTGAG-CTTCCTGAT
1 GGCTCTTCGTGAGTATTCCTGAT
66433610 TAAAAGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.13, C:0.22, G:0.26, T:0.39
Consensus pattern (24 bp):
GGCTCTTCGTGAGTATTCCTGATA
Found at i:66434477 original size:25 final size:25
Alignment explanation
Indices: 66434431--66434478 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
66434421 TACACCTCAA
*
66434431 ATCAAATACATTACAATTATATCTT
1 ATCAAATACATTACAATCATATCTT
*
66434456 ATCATATACATATA-AATCATATC
1 ATCAAATACAT-TACAATCATATC
66434479 AATCCATCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.38
Consensus pattern (25 bp):
ATCAAATACATTACAATCATATCTT
Found at i:66448175 original size:43 final size:42
Alignment explanation
Indices: 66448105--66448189 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 42
66448095 CCTAAAATAG
* *
66448105 TAAATTACTAAAATGCCCCTAAGTATGAAAATTACCATTATA
1 TAAATTACTAAAATACCCCTAAATATGAAAATTACCATTATA
*
66448147 TAAATTTACTAAAATACCCTTAAATATGAAAATTACCATTATA
1 TAAA-TTACTAAAATACCCCTAAATATGAAAATTACCATTATA
66448190 CCCCTAGGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 4 0.10
43 35 0.90
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (42 bp):
TAAATTACTAAAATACCCCTAAATATGAAAATTACCATTATA
Found at i:66448365 original size:27 final size:27
Alignment explanation
Indices: 66448327--66448384 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
66448317 GAGGAAGCGT
* *
66448327 TCTGGTGGCTCTGCCACAATATTTGTA
1 TCTGGTGGCTCTACCACAATATCTGTA
* *
66448354 TCTGGTGTCTCTATCACAATATCTGTA
1 TCTGGTGGCTCTACCACAATATCTGTA
66448381 -CTGG
1 TCTGG
66448385 CAGCCATGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (27 bp):
TCTGGTGGCTCTACCACAATATCTGTA
Found at i:66451211 original size:24 final size:23
Alignment explanation
Indices: 66451176--66451223 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
66451166 AATTCTATAT
66451176 TGTGATTTGATAGAAAATTTCAA
1 TGTGATTTGATAGAAAATTTCAA
* * *
66451199 TGTGCTTTAGATAGACAGTTTCAA
1 TGTGATTT-GATAGAAAATTTCAA
66451223 T
1 T
66451224 TTAGCATCGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (23 bp):
TGTGATTTGATAGAAAATTTCAA
Found at i:66453255 original size:28 final size:28
Alignment explanation
Indices: 66453224--66453323 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 28
66453214 AGTATCGGGG
*
66453224 ATGGCACTTAGTGTGTGAGACATCCAGA
1 ATGGCACTTAGTGTGCGAGACATCCAGA
* *
66453252 ATGGCACTTAGTGTGCGAAGTA-A-CGAGG
1 ATGGCACTTAGTGTGCG-AG-ACATCCAGA
*
66453280 ATGGCACTTAGTGTGCGAAACATCCAGA
1 ATGGCACTTAGTGTGCGAGACATCCAGA
* *
66453308 ACGACACTTAGTGTGC
1 ATGGCACTTAGTGTGC
66453324 AAGGGATCAG
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 2 0.03
28 53 0.88
29 3 0.05
30 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAGACATCCAGA
Found at i:66453283 original size:56 final size:56
Alignment explanation
Indices: 66453197--66453323 Score: 182
Period size: 56 Copynumber: 2.3 Consensus size: 56
66453187 TAATTATATG
** * * * *
66453197 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGTGAGACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
66453253 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
* *
66453309 CGACACTTAGTGTGC
1 TGGCACTTAGTGTGC
66453324 AAGGGATCAG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
Found at i:66453351 original size:56 final size:56
Alignment explanation
Indices: 66453208--66453358 Score: 146
Period size: 56 Copynumber: 2.7 Consensus size: 56
66453198 GGCACTTAAC
* * * * * * * *
66453208 GTGCGAAGTATCGGGGATGGCACTTAGTGTGTGAGACATCCAGAATGGCACTTAGT
1 GTGCGAAGGAACGAGGATGGCACTTAATGTGCGAAACATCCAGAACGACACTTAGT
* *
66453264 GTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAACGACACTTAGT
1 GTGCGAAGGAACGAGGATGGCACTTAATGTGCGAAACATCCAGAACGACACTTAGT
* *
66453320 GTGC-AAGGGATC-AGGTATGGCA-TCTAATGTGCGATACAT
1 GTGCGAA-GGAACGAGG-ATGGCACT-TAATGTGCGAAACAT
66453359 TGAATATTCA
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
55 6 0.07
56 76 0.93
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (56 bp):
GTGCGAAGGAACGAGGATGGCACTTAATGTGCGAAACATCCAGAACGACACTTAGT
Found at i:66453437 original size:32 final size:32
Alignment explanation
Indices: 66453401--66453467 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
66453391 TGAGTATGAG
* *
66453401 ATTGGTACGAGATGATATAGGTATATACGGAA
1 ATTGGTACAAGATGATATAGGTATATACGAAA
* * *
66453433 ATTGGTACAATATGGTATAGGTATGTACGAAA
1 ATTGGTACAAGATGATATAGGTATATACGAAA
66453465 ATT
1 ATT
66453468 CAATTGAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.31
Consensus pattern (32 bp):
ATTGGTACAAGATGATATAGGTATATACGAAA
Found at i:66455575 original size:42 final size:43
Alignment explanation
Indices: 66455472--66455600 Score: 129
Period size: 42 Copynumber: 3.0 Consensus size: 43
66455462 GGGATCACAT
* * ** *
66455472 ATATCGATGCCGATAGCCCA-ACTATGGTCTTACACAATTTCCC
1 ATATCGATGCC-ATATCCCAGAATATGGTCTTACACAAAATCAC
* * *
66455515 ATATCAATGCGATGTCCCAGAAT-TGGTCTTACACAAAATCAC
1 ATATCGATGCCATATCCCAGAATATGGTCTTACACAAAATCAC
* *
66455557 GTATCGATGCCATATCCCAG-ATATGGTCTTTACACGAAATCAC
1 ATATCGATGCCATATCCCAGAATATGGTC-TTACACAAAATCAC
66455600 A
1 A
66455601 CATAACCCTA
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
41 2 0.03
42 43 0.62
43 24 0.35
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
ATATCGATGCCATATCCCAGAATATGGTCTTACACAAAATCAC
Found at i:66457117 original size:30 final size:29
Alignment explanation
Indices: 66457083--66457140 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
66457073 ACTAAACCTC
66457083 ACATATAACAAAGAAT-AGCCACAAAGGCTA
1 ACATATAAC-AA-AATCAGCCACAAAGGCTA
*
66457113 ACATATAACAAATTCAGCCACAAAGGCT
1 ACATATAACAAAATCAGCCACAAAGGCT
66457141 CACAGAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 2 0.08
29 15 0.58
30 9 0.35
ACGTcount: A:0.50, C:0.22, G:0.12, T:0.16
Consensus pattern (29 bp):
ACATATAACAAAATCAGCCACAAAGGCTA
Found at i:66457139 original size:29 final size:29
Alignment explanation
Indices: 66457099--66457168 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
66457089 AACAAAGAAT
* *
66457099 AGCCACAAAGGCTAACATATAACAAATTC
1 AGCCACAAAGGCTAACAGAAAACAAATTC
* *
66457128 AGCCACAAAGGCTCACAGAAAACATATTC
1 AGCCACAAAGGCTAACAGAAAACAAATTC
**
66457157 AATCACAAAGGC
1 AGCCACAAAGGC
66457169 ATCACTTTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.47, C:0.26, G:0.13, T:0.14
Consensus pattern (29 bp):
AGCCACAAAGGCTAACAGAAAACAAATTC
Found at i:66462884 original size:40 final size:40
Alignment explanation
Indices: 66462806--66462996 Score: 215
Period size: 40 Copynumber: 4.6 Consensus size: 40
66462796 AACCCAAGTA
* * *
66462806 CCTTCGGGAATTAG-CCGGATATAG-CAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAGG
* * *
66462845 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
66462885 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGGCCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACT-------A-G-CACAAAGG
66462934 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
*
66462974 CCTTAGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
66462997 CATTCGAATA
Statistics
Matches: 133, Mismatches: 8, Indels: 21
0.82 0.05 0.13
Matches are distributed among these distances:
39 12 0.09
40 80 0.60
41 2 0.02
42 1 0.01
47 1 0.01
48 1 0.01
49 36 0.27
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
Found at i:66466599 original size:144 final size:144
Alignment explanation
Indices: 66466274--66466589 Score: 365
Period size: 144 Copynumber: 2.2 Consensus size: 144
66466264 TTTTGATTTT
* * *
66466274 TTTTAAAAAGAGAAAGTTTAGATTTT-AAAATATAAAAA-ATATGTTTTTTAGTCATTTTAAAAG
1 TTTTAAAAGGAGAAACTTTAGATTTTGAAAA-ATAAAAATCTAT-TTTTTTAGTCATTTTAAAAG
* * * *
66466337 AAAGTTTAAAATTTTAAAACAAAGTTTTAATTTTTTTTGACTATTTCAAAGTAAAAGCTTTATTA
64 AAAGTTTAAAATTTTAAAACAAAATTTTAATTTTTTTTAACTATTTCAAAATAAAAGATTTATTA
* *
66466402 AGAAAAATAGTGTTTT
129 AGAAAAATAATGTTTC
* *
66466418 TTTTAAAAGGAGAAACTTTAGATTTTGAAAAATAAAAATCTATTTTTTTAGTCATTTTAGAGGAA
1 TTTTAAAAGGAGAAACTTTAGATTTTGAAAAATAAAAATCTATTTTTTTAGTCATTTTAAAAGAA
* * *
66466483 AGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTTCAACTATTTCAAAATAAATTTTTGATTT
66 AGTTTAAAATTTTAAAACAAAATTTT-AATTTTTTTT-AACTATTTCAAAATAAA----AGATTT
**
66466548 -TTAAGAAACGTAATGATTTC
125 ATTAAGAAAAATAATG-TTTC
66466568 TTTTAAAA-GA-AAACTTT-GATTT
1 TTTTAAAAGGAGAAACTTTAGATTT
66466590 CACAAAAAAA
Statistics
Matches: 147, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
144 75 0.51
145 16 0.11
146 15 0.10
147 5 0.03
148 7 0.05
149 14 0.10
150 15 0.10
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (144 bp):
TTTTAAAAGGAGAAACTTTAGATTTTGAAAAATAAAAATCTATTTTTTTAGTCATTTTAAAAGAA
AGTTTAAAATTTTAAAACAAAATTTTAATTTTTTTTAACTATTTCAAAATAAAAGATTTATTAAG
AAAAATAATGTTTC
Found at i:66473663 original size:47 final size:47
Alignment explanation
Indices: 66473600--66474098 Score: 738
Period size: 47 Copynumber: 10.6 Consensus size: 47
66473590 CCCTTCGGGA
* * *
66473600 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66473647 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
66473694 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66473741 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66473788 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66473835 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
66473882 CTTATCACACATACACA-TGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
66473929 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66473976 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66474023 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66474072 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
66474099 TATTCAAATA
Statistics
Matches: 422, Mismatches: 26, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 374 0.89
48 1 0.00
49 46 0.11
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:66476037 original size:56 final size:56
Alignment explanation
Indices: 66475970--66476089 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
66475960 TATTAGTTTA
66475970 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
66476026 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
66476082 TTGCCCAT
1 TTGCCCAT
66476090 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:66479001 original size:42 final size:42
Alignment explanation
Indices: 66478955--66479049 Score: 127
Period size: 42 Copynumber: 2.3 Consensus size: 42
66478945 GTCTCAAACG
* * ** *
66478955 TGGTCTTATATGAGATCTCACATTGATGCCATATCCCAGATA
1 TGGTCTTATACGAAATCTCACATCAACGCCATATCCCAGATA
* *
66478997 TGGTCTTATACGAAATCTCATATCAACGTCATATCCCAGATA
1 TGGTCTTATACGAAATCTCACATCAACGCCATATCCCAGATA
66479039 TGGTCTTATAC
1 TGGTCTTATAC
66479050 AAGACCTTGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (42 bp):
TGGTCTTATACGAAATCTCACATCAACGCCATATCCCAGATA
Found at i:66485838 original size:40 final size:40
Alignment explanation
Indices: 66485790--66485961 Score: 161
Period size: 39 Copynumber: 4.3 Consensus size: 40
66485780 GCTCCTCATT
* *
66485790 CAAATGCCTTCGGAACATAGCTCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGAACATAACCCGGATT-TAGTAACTCGCA
* * *
66485830 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGAACATAACCCGGATTTAGTAACTCGCA
* * * * * *
66485870 CAAATGCCTTTGG-GCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGAACATAACCCGGATTTAGTAACTCGCA
* * * * * *
66485909 CAAATGCATTCGG-GCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGAACATAACCCGGATTTAGTAACTCGCA
66485948 CAAATGCCTTCGGA
1 CAAATGCCTTCGGA
66485962 TCTTAGTCCG
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 71 0.61
40 43 0.37
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGAACATAACCCGGATTTAGTAACTCGCA
Found at i:66485907 original size:39 final size:39
Alignment explanation
Indices: 66485818--66486013 Score: 225
Period size: 39 Copynumber: 4.9 Consensus size: 39
66485808 AGCTCGGTTA
* * *
66485818 TAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT
*
66485858 TAGTAACTCGCACAAATGCCTTTGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
* *
66485897 TAGTATCTCGCACAAATGCATTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
* * *
66485936 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG-AT
1 TAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGAAT
* * *
66485975 ATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -TAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
66486014 CATCATTCAA
Statistics
Matches: 135, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 73 0.54
40 54 0.40
41 8 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
Found at i:66485973 original size:79 final size:79
Alignment explanation
Indices: 66485818--66486013 Score: 218
Period size: 79 Copynumber: 2.5 Consensus size: 79
66485808 AGCTCGGTTA
* * * *
66485818 TAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTTGG
1 TAGTAACTCGCACAAATGCATTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGG
66485883 GCTTAGCCCGGAAT
66 GCTTAGCCCGGAAT
* * *
66485897 TAGTATCTCGCACAAATGCATTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCATTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGG
* *
66485961 ATCTTAGTCCGG-AT
66 -GCTTAGCCCGGAAT
* * * * *
66485975 ATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -TAGTAAC-TCGCACAAATGCATTCGGGACTTAACCCGGA
66486014 CATCATTCAA
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
78 36 0.36
79 44 0.44
80 19 0.19
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
TAGTAACTCGCACAAATGCATTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGG
GCTTAGCCCGGAAT
Found at i:66492491 original size:43 final size:43
Alignment explanation
Indices: 66492438--66492542 Score: 156
Period size: 43 Copynumber: 2.4 Consensus size: 43
66492428 GGTTTAATGT
*
66492438 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCGGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCAGCTAATTA
* **
66492481 ATTGGCACTAAGTGTGCGTTACAATTATAGTTTCAGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCAGCTAATTA
* *
66492524 GTTGGCATTAAGTGTGCGA
1 ATTGGCACTAAGTGTGCGA
66492543 GTTCATTGAA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATTATAGCCTCAGCTAATTA
Found at i:66499593 original size:27 final size:26
Alignment explanation
Indices: 66499551--66499666 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 26
66499541 TAGCATGGCT
*
66499551 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGGCAGAGTC
66499577 ACCAGATACAGATATTGTGGCAGAGTC
1 ACCAGA-ACAGATATTGTGGCAGAGTC
* *
66499604 ACCAGAACAGATATTCGTGGCATAGCC
1 ACCAGAACAGATATT-GTGGCAGAGTC
*
66499631 ACCAGAAACAGATATTTGTGGCATAG-C
1 ACCAG-AACAGATA-TTGTGGCAGAGTC
66499658 TACCAGAAC
1 -ACCAGAAC
66499667 GCTTCCTCTA
Statistics
Matches: 82, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
26 15 0.18
27 43 0.52
28 22 0.27
29 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGGCAGAGTC
Found at i:66499645 original size:54 final size:54
Alignment explanation
Indices: 66499531--66499666 Score: 163
Period size: 53 Copynumber: 2.5 Consensus size: 54
66499521 GCTACACGCC
* * *
66499531 ACAGA-ATTTGTAGCATG-GCTACCAGAACAGATATTGTGACAGAGTCACCAGAT
1 ACAGATATTTGTGGCA-GAGCTACCAGAACAGATATTGTGACAGAGCCACCAGAA
* *
66499584 ACAGATA-TTGTGGCAGAG-TCACCAGAACAGATATTCGTGGCATAGCCACCAGAA
1 ACAGATATTTGTGGCAGAGCT-ACCAGAACAGATATT-GTGACAGAGCCACCAGAA
*
66499638 ACAGATATTTGTGGCATAGCTACCAGAAC
1 ACAGATATTTGTGGCAGAGCTACCAGAAC
66499667 GCTTCCTCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
52 2 0.03
53 28 0.39
54 22 0.31
55 18 0.25
56 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (54 bp):
ACAGATATTTGTGGCAGAGCTACCAGAACAGATATTGTGACAGAGCCACCAGAA
Found at i:66499651 original size:28 final size:28
Alignment explanation
Indices: 66499531--66499665 Score: 136
Period size: 27 Copynumber: 5.0 Consensus size: 28
66499521 GCTACACGCC
* * *
66499531 ACAGA-ATTTGTAGCATGGCTACCAG-A
1 ACAGATATTTGTGGCATAGCCACCAGAA
* * * *
66499557 ACAGATA-TTGTGACAGAGTCACCAGAT
1 ACAGATATTTGTGGCATAGCCACCAGAA
* *
66499584 ACAGATA-TTGTGGCAGAGTCACCAG-A
1 ACAGATATTTGTGGCATAGCCACCAGAA
*
66499610 ACAGATATTCGTGGCATAGCCACCAGAA
1 ACAGATATTTGTGGCATAGCCACCAGAA
*
66499638 ACAGATATTTGTGGCATAGCTACCAGAA
1 ACAGATATTTGTGGCATAGCCACCAGAA
66499666 CGCTTCCTCT
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 24 0.26
27 40 0.44
28 27 0.30
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (28 bp):
ACAGATATTTGTGGCATAGCCACCAGAA
Found at i:66503920 original size:48 final size:48
Alignment explanation
Indices: 66503849--66504449 Score: 887
Period size: 48 Copynumber: 12.3 Consensus size: 48
66503839 TGTACAAGAT
* *
66503849 AAATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
66503897 AAATATGGATGAGATATGTATATGTCGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
66503945 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
66503993 AAAAATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
66504041 AAATATGTATGAGAAATGTATATATGTGGGGGGTAAAGCTGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGT----GGTAAAGCCGAATGGCTAATGTG
* * * * *
66504095 AAAAAAGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTACTGTAAA
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT--G
* * * *
66504145 AAAAATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
66504193 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
66504241 AAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTG
*
66504291 AAATATGTATGAGATATGTATATGGGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
66504339 AAATATGTATGAGATATGTATATGGGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
66504387 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGTCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
66504435 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
66504450 GTGTGTATAT
Statistics
Matches: 506, Mismatches: 37, Indels: 20
0.90 0.07 0.04
Matches are distributed among these distances:
48 365 0.72
50 97 0.19
52 7 0.01
54 37 0.07
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:66506260 original size:45 final size:45
Alignment explanation
Indices: 66506192--66506455 Score: 411
Period size: 45 Copynumber: 5.9 Consensus size: 45
66506182 AAGAGGTGGA
** * * *
66506192 CAACATCATGCATAATTTTTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
66506237 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
66506282 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
66506327 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * *
66506372 CAACATCATGCATAATTCATGGAAGAATTTAATGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
66506417 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
66506456 GCATGGCCGA
Statistics
Matches: 203, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 203 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:66510648 original size:47 final size:47
Alignment explanation
Indices: 66510586--66511212 Score: 1073
Period size: 47 Copynumber: 13.4 Consensus size: 47
66510576 TTCAGCCAAG
66510586 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
66510633 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66510680 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66510727 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
66510774 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
66510821 AAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
66510868 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
66510915 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66510962 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
66511009 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66511056 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66511103 AAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* * * * *
66511149 AAGTGTATATATGTG---AGGCCGAGTGGCCAACGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
66511193 AAGTGCATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
66511213 TCCCGAAGGG
Statistics
Matches: 555, Mismatches: 21, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
44 37 0.07
46 46 0.08
47 472 0.85
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
Found at i:66511387 original size:37 final size:37
Alignment explanation
Indices: 66511331--66511409 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66511321 CCGAGCTCTA
* *
66511331 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
66511368 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66511405 AAGAC
1 AAGAC
66511410 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66526581 original size:68 final size:68
Alignment explanation
Indices: 66526413--66526588 Score: 157
Period size: 68 Copynumber: 2.6 Consensus size: 68
66526403 TAGTACCACT
* * * * *
66526413 CATGCGACCTAGC--CA-ATTTGTCTCGTAGCTCTCTTGTCTACATGGTGTTCTTCACTTGGAAT
1 CATGCGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
66526475 CACG
65 CACG
** * *
66526479 CATGCGACCTAGCTACATTTATCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGCGACCTAGCTACACATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
66526541 ATCACG
63 ATCACG
* *
66526547 CATGTGACCTAGCTACTACATAGTATCTCGTAGCTTTCTTGT
1 CATGCGACCTAGCTAC-ACATA-TATCTCGTAGCTCTCTTGT
66526589 ACACATGATG
Statistics
Matches: 90, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
66 13 0.14
68 37 0.41
69 8 0.09
70 6 0.07
71 26 0.29
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACG
Found at i:66540394 original size:27 final size:27
Alignment explanation
Indices: 66540350--66540521 Score: 222
Period size: 27 Copynumber: 6.4 Consensus size: 27
66540340 GGCATAATTG
*
66540350 TCATTTTACCATACAGGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGA
* * *
66540377 TCATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGA
*
66540404 TCATTTTACTCTACAGGGGTATTAC-A
1 TCATTTTACCCTACAGGGGTATTACGA
*
66540430 GTCATTTTACCCTAC-GAGGGTATTACGG
1 -TCATTTTACCCTACAG-GGGTATTACGA
* * *
66540458 TCATTTTACCCTACAGGGGCATTATGG
1 TCATTTTACCCTACAGGGGTATTACGA
*
66540485 TCATTTTACCCTACAAGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGA
66540512 TCATTTTACC
1 TCATTTTACC
66540522 TATTTTGGGG
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 123 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGA
Found at i:66540487 original size:81 final size:80
Alignment explanation
Indices: 66540349--66540521 Score: 258
Period size: 81 Copynumber: 2.1 Consensus size: 80
66540339 TGGCATAATT
* *
66540349 GTCATTTTACCATACAGGGGTATTACGATCATTTTACCCTATAGGGGCATTACGGTCATTTTACT
1 GTCATTTTACCATACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACC
*
66540414 CTACAGGGGTATTAC
66 CTACAAGGGTATTAC
* * *
66540429 AGTCATTTTACCCTAC-GAGGGTATTACGGTCATTTTACCCTACAGGGGCATTATGGTCATTTTA
1 -GTCATTTTACCATACAG-GGGTATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTA
66540493 CCCTACAAGGGTATTAC
64 CCCTACAAGGGTATTAC
66540510 GATCATTTTACC
1 G-TCATTTTACC
66540522 TATTTTGGGG
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
80 2 0.02
81 82 0.98
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (80 bp):
GTCATTTTACCATACAGGGGTATTACGATCATTTTACCCTACAGGGGCATTACGGTCATTTTACC
CTACAAGGGTATTAC
Found at i:66540948 original size:28 final size:28
Alignment explanation
Indices: 66540908--66540969 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
66540898 GAATATGCAA
*
66540908 AACAGTCTGGGCCTTAA-CCCTATACAGT
1 AACAGTCTGGGCC-TAAGCCCAATACAGT
*
66540936 AACAGTGTGGGCCTAAGCCCAATACAGT
1 AACAGTCTGGGCCTAAGCCCAATACAGT
*
66540964 ATCAGT
1 AACAGT
66540970 ACAGTGTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 3 0.10
28 27 0.90
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (28 bp):
AACAGTCTGGGCCTAAGCCCAATACAGT
Found at i:66541461 original size:27 final size:27
Alignment explanation
Indices: 66541431--66541530 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
66541421 TACCTTATAG
*
66541431 GGGTATTTCGGTAATTTTATATTA-CAA
1 GGGTATTTCGGTAATTTTATA-AACCAA
* * *
66541458 GGGTATTTCGATAATTTTACAAACCTA
1 GGGTATTTCGGTAATTTTATAAACCAA
* * *
66541485 GGGTATTTAGGTAATTTTATGAACCGA
1 GGGTATTTCGGTAATTTTATAAACCAA
* *
66541512 GGGTATTTCAGTAACTTTA
1 GGGTATTTCGGTAATTTTA
66541531 AAATCTAGGG
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.02
27 59 0.98
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTATAAACCAA
Found at i:66541515 original size:54 final size:52
Alignment explanation
Indices: 66541431--66541541 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 52
66541421 TACCTTATAG
* *
66541431 GGGTATTTCGGTAATTTTATATTACAAGGGTATTTC-GATAATTTTACAAACCTA
1 GGGTATTTAGGTAATTTTATA-TACAAGGGTATTTCAG-TAACTTTA-AAACCTA
* *
66541485 GGGTATTTAGGTAATTTTATGA-ACCGAGGGTATTTCAGTAACTTTAAAATCTA
1 GGGTATTTAGGTAATTTTAT-ATA-CAAGGGTATTTCAGTAACTTTAAAACCTA
66541538 GGGT
1 GGGT
66541542 CTTAACGACC
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
53 11 0.22
54 37 0.74
55 2 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (52 bp):
GGGTATTTAGGTAATTTTATATACAAGGGTATTTCAGTAACTTTAAAACCTA
Found at i:66544572 original size:28 final size:28
Alignment explanation
Indices: 66544530--66544798 Score: 122
Period size: 28 Copynumber: 9.6 Consensus size: 28
66544520 TATTTATATG
** *
66544530 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCGGGAA
* **
66544558 TGGCACTTAGTGTGCGATA-CATCCAGAA
1 TGGCACTTAGTGTGCGA-AGTATCGGGAA
*
66544586 TGGCACTTAGTGTGCGAAGTAAT-GAGG-G
1 TGGCACTTAGTGTGCGAAGT-ATCG-GGAA
* ** **
66544614 TGGCACTTAGTGTGCAAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTATCGGGAA
* *
66544642 CGGCACTTAGTGTGC-AAGGTATCGGGTA
1 TGGCACTTAGTGTGCGAA-GTATCGGGAA
* * ** **
66544670 TGGCATTTAGTGTGCAAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTATCGGGAA
* * *
66544698 CGGCACTTAGTGTGC-AAGGTATCGAGTA
1 TGGCACTTAGTGTGCGAA-GTATCGGGAA
* * ** **
66544726 TGTCA-TCTAGTGTGTGAAACATCCAGAA
1 TGGCACT-TAGTGTGCGAAGTATCGGGAA
* * *
66544754 CGGCACTTAGTGTGC-AAGGTATCGAGTA
1 TGGCACTTAGTGTGCGAA-GTATCGGGAA
66544782 TGGCA-TCTAGTGTGCGA
1 TGGCACT-TAGTGTGCGA
66544799 GACATTGAAT
Statistics
Matches: 176, Mismatches: 50, Indels: 29
0.69 0.20 0.11
Matches are distributed among these distances:
27 12 0.07
28 154 0.88
29 10 0.06
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCGGGAA
Found at i:66544618 original size:56 final size:55
Alignment explanation
Indices: 66544531--66544796 Score: 299
Period size: 56 Copynumber: 4.7 Consensus size: 55
66544521 ATTTATATGT
** * * *
66544531 GGCACTTAACGTGCGAA-GTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAAT
1 GGCACTTAGTGTGC-AAGGTATC-GGGATGGCACTTAGTGTGCAAAACATCCAGAAC
*
66544587 GGCACTTAGTGTGCGAA-GTAAT-GAGGGTGGCACTTAGTGTGCAAAACATCCAGAAC
1 GGCACTTAGTGTGC-AAGGT-ATCG-GGATGGCACTTAGTGTGCAAAACATCCAGAAC
*
66544643 GGCACTTAGTGTGCAAGGTATCGGGTATGGCATTTAGTGTGCAAAACATCCAGAAC
1 GGCACTTAGTGTGCAAGGTATCGGG-ATGGCACTTAGTGTGCAAAACATCCAGAAC
* * **
66544699 GGCACTTAGTGTGCAAGGTATCGAGTATGTCA-TCTAGTGTGTGAAACATCCAGAAC
1 GGCACTTAGTGTGCAAGGTATCG-GGATGGCACT-TAGTGTGCAAAACATCCAGAAC
*
66544755 GGCACTTAGTGTGCAAGGTATCGAGTATGGCA-TCTAGTGTGC
1 GGCACTTAGTGTGCAAGGTATCG-GGATGGCACT-TAGTGTGC
66544797 GAGACATTGA
Statistics
Matches: 189, Mismatches: 14, Indels: 14
0.87 0.06 0.06
Matches are distributed among these distances:
55 8 0.04
56 178 0.94
57 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (55 bp):
GGCACTTAGTGTGCAAGGTATCGGGATGGCACTTAGTGTGCAAAACATCCAGAAC
Found at i:66544737 original size:112 final size:112
Alignment explanation
Indices: 66544531--66544796 Score: 342
Period size: 112 Copynumber: 2.4 Consensus size: 112
66544521 ATTTATATGT
** * * * * *
66544531 GGCACTTAACGTGCGAA-GTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAATGGCACTTA
1 GGCACTTAGTGTGC-AAGGTATCGGGTATGGCATTTAGTGTGCAAAACATCCAGAACGGCACTTA
*
66544595 GTGTGCGAAGTAATGAGGGTGGCACTTAGTGTGCAAAACATCCAGAAC
65 GTGTGCGAAGTAATGAGGATGGCACTTAGTGTGCAAAACATCCAGAAC
66544643 GGCACTTAGTGTGCAAGGTATCGGGTATGGCATTTAGTGTGCAAAACATCCAGAACGGCACTTAG
1 GGCACTTAGTGTGCAAGGTATCGGGTATGGCATTTAGTGTGCAAAACATCCAGAACGGCACTTAG
* * **
66544708 TGTGC-AAGGT-ATCGAGTATGTCA-TCTAGTGTGTGAAACATCCAGAAC
66 TGTGCGAA-GTAAT-GAGGATGGCACT-TAGTGTGCAAAACATCCAGAAC
* *
66544755 GGCACTTAGTGTGCAAGGTATCGAGTATGGCATCTAGTGTGC
1 GGCACTTAGTGTGCAAGGTATCGGGTATGGCATTTAGTGTGC
66544797 GAGACATTGA
Statistics
Matches: 136, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
111 7 0.05
112 129 0.95
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (112 bp):
GGCACTTAGTGTGCAAGGTATCGGGTATGGCATTTAGTGTGCAAAACATCCAGAACGGCACTTAG
TGTGCGAAGTAATGAGGATGGCACTTAGTGTGCAAAACATCCAGAAC
Found at i:66544882 original size:32 final size:32
Alignment explanation
Indices: 66544846--66544912 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
66544836 TGAGTATGAT
66544846 ATTGGTACGAGATGATACAGGTATGTACGAAA
1 ATTGGTACGAGATGATACAGGTATGTACGAAA
* *
66544878 ATTGGTACGATATGGTACAGGTATGTACGAAA
1 ATTGGTACGAGATGATACAGGTATGTACGAAA
66544910 ATT
1 ATT
66544913 CAATTGAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.28
Consensus pattern (32 bp):
ATTGGTACGAGATGATACAGGTATGTACGAAA
Found at i:66551107 original size:28 final size:28
Alignment explanation
Indices: 66551076--66551205 Score: 113
Period size: 28 Copynumber: 4.7 Consensus size: 28
66551066 AGTATCGGGG
* * *
66551076 ATGGCGCTTAGTGTGCGATACATCCAGA
1 ATGGCACTTAGTGTGCAAAACATCCAGA
66551104 ATGGCACTTAGTGTGCAAAACATCCAGA
1 ATGGCACTTAGTGTGCAAAACATCCAGA
* * *** *
66551132 ACGACACTTA-TGTGCAAGGTAT-CAGGT
1 ATGGCACTTAGTGTGCAAAACATCCA-GA
* *
66551159 ATGTCA-TCTAGTGTGCGAAACATCCAGA
1 ATGGCACT-TAGTGTGCAAAACATCCAGA
*
66551187 ACGGCACTTAGTGTGCAAA
1 ATGGCACTTAGTGTGCAAA
66551206 GTATCGGGTA
Statistics
Matches: 78, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
26 3 0.04
27 16 0.21
28 56 0.72
29 3 0.04
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCAAAACATCCAGA
Found at i:66551180 original size:55 final size:56
Alignment explanation
Indices: 66551104--66551229 Score: 184
Period size: 55 Copynumber: 2.3 Consensus size: 56
66551094 TACATCCAGA
*
66551104 ATGGCA-CTTAGTGTGCAAAACATCCAGAACGACACTTA-TGTGCAAGGTATCAGGT
1 ATGGCATC-TAGTGTGCAAAACATCCAGAACGACACTTAGTGTGCAAAGTATCAGGT
* * * *
66551159 ATGTCATCTAGTGTGCGAAACATCCAGAACGGCACTTAGTGTGCAAAGTATCGGGT
1 ATGGCATCTAGTGTGCAAAACATCCAGAACGACACTTAGTGTGCAAAGTATCAGGT
66551215 ATGGCATCTAGTGTG
1 ATGGCATCTAGTGTG
66551230 TGAGACATTG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
55 33 0.52
56 30 0.48
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (56 bp):
ATGGCATCTAGTGTGCAAAACATCCAGAACGACACTTAGTGTGCAAAGTATCAGGT
Found at i:66551316 original size:32 final size:32
Alignment explanation
Indices: 66551280--66551346 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
66551270 TGAGTATAAG
* *
66551280 ATTGGTACGAGATGATACAGGTTTGTACGAAA
1 ATTGGTACGAGATGATACAGATATGTACGAAA
* *
66551312 ATTGGTACGATATGGTACAGATATGTACGAAA
1 ATTGGTACGAGATGATACAGATATGTACGAAA
66551344 ATT
1 ATT
66551347 CAATTGAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (32 bp):
ATTGGTACGAGATGATACAGATATGTACGAAA
Found at i:66551611 original size:13 final size:14
Alignment explanation
Indices: 66551588--66551616 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
66551578 AAGATTGAAA
66551588 AATTCTTAGATTTG
1 AATTCTTAGATTTG
66551602 AATT-TTAGATTTG
1 AATTCTTAGATTTG
66551615 AA
1 AA
66551617 ATGCTATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48
Consensus pattern (14 bp):
AATTCTTAGATTTG
Found at i:66557447 original size:37 final size:37
Alignment explanation
Indices: 66557397--66557475 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66557387 TTATTACGAA
* *
66557397 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
66557434 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
66557471 GTCTT
1 GTCTT
66557476 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:66557709 original size:47 final size:47
Alignment explanation
Indices: 66557594--66558064 Score: 795
Period size: 47 Copynumber: 10.1 Consensus size: 47
66557584 CCCTTCGGGA
* * * * * *
66557594 CTTATCACAT-T-TATACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
66557639 C-CGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66557685 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66557732 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66557779 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66557826 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66557873 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66557920 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66557967 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66558014 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66558061 CTTA
1 CTTA
66558065 CTATCATTTC
Statistics
Matches: 407, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
44 6 0.01
45 2 0.00
46 29 0.07
47 370 0.91
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66576474 original size:27 final size:26
Alignment explanation
Indices: 66576439--66576508 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
66576429 TTAGTTTACC
66576439 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCT-GATTAGCA
* *
66576466 AAATTACCAAAATACTCCTGATTTGTA
1 AAATTACCAAAATAC-CCTGATTAGCA
*
66576493 AAATTACCGAAATACC
1 AAATTACCAAAATACC
66576509 GTTGTAAGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 35 0.90
28 3 0.08
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.26
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGATTAGCA
Found at i:66576527 original size:27 final size:27
Alignment explanation
Indices: 66576494--66576822 Score: 410
Period size: 27 Copynumber: 12.3 Consensus size: 27
66576484 TGATTTGTAA
* *
66576494 AATTACCGAAATACCGTTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
66576521 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* **
66576548 AAATACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
66576575 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
66576602 AATTACTGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
66576629 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
66576656 AATTACTGAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCTTGTAGGGTAG
66576683 AATTACCGAAA-ACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
66576709 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
66576736 AAATACCGAAA-ACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
66576762 AATTACTGAAATACCCGTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
66576789 AATTACCGAGATACCCTCGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
66576816 AATTACC
1 AATTACC
66576823 ATTTTGCCTC
Statistics
Matches: 265, Mismatches: 35, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 45 0.17
27 220 0.83
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:66577489 original size:27 final size:26
Alignment explanation
Indices: 66577445--66577496 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
66577435 CTCGCTGCAA
66577445 TCTGGTGACCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
66577472 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
66577497 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:66578884 original size:31 final size:31
Alignment explanation
Indices: 66578848--66578949 Score: 195
Period size: 31 Copynumber: 3.3 Consensus size: 31
66578838 AGAATTTCGG
66578848 GTTTAGGGACTAAATTGAAAGAAATGTAAAA
1 GTTTAGGGACTAAATTGAAAGAAATGTAAAA
66578879 GTTTAGGGACTAAATTGAAAGAAATGTAAAA
1 GTTTAGGGACTAAATTGAAAGAAATGTAAAA
*
66578910 TTTTAGGGACTAAATTGAAAGAAATGTAAAA
1 GTTTAGGGACTAAATTGAAAGAAATGTAAAA
66578941 GTTTAGGGA
1 GTTTAGGGA
66578950 AAGTATATAA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 69 1.00
ACGTcount: A:0.46, C:0.03, G:0.24, T:0.27
Consensus pattern (31 bp):
GTTTAGGGACTAAATTGAAAGAAATGTAAAA
Found at i:66579369 original size:24 final size:24
Alignment explanation
Indices: 66579314--66579407 Score: 107
Period size: 24 Copynumber: 3.9 Consensus size: 24
66579304 AAATGAGAAG
*
66579314 GTTGAAAAGGATAATAATGGAAAT
1 GTTGAAAAGGATAACAATGGAAAT
* *
66579338 GATAAAAAGGATAACAATGGAAAT
1 GTTGAAAAGGATAACAATGGAAAT
* * *
66579362 GTTGAAAATGATGACAATGAAAAT
1 GTTGAAAAGGATAACAATGGAAAT
* * *
66579386 GTCGAAAAGGATAGCAAAGGAA
1 GTTGAAAAGGATAACAATGGAA
66579408 TGGTTATTAT
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.52, C:0.04, G:0.24, T:0.19
Consensus pattern (24 bp):
GTTGAAAAGGATAACAATGGAAAT
Found at i:66587291 original size:43 final size:43
Alignment explanation
Indices: 66587230--66587451 Score: 279
Period size: 43 Copynumber: 5.2 Consensus size: 43
66587220 CATAGGATTT
*
66587230 TCGATATGTG-TTCTCGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATT-ACGTGTAAGACCACGTCTGGGACGTTGGCA
66587273 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * *
66587316 TCGATATATGGTTACGTGTAAGACCACGTCTAGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* ***
66587359 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACACCGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * ***
66587402 TTG-TATTTGATT-CGTGTAAGACCACGTTTAATACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
66587443 TCGATATGT
1 TCGATATGT
66587452 TATTCTGATA
Statistics
Matches: 154, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
41 23 0.15
42 12 0.08
43 117 0.76
44 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:66587620 original size:57 final size:57
Alignment explanation
Indices: 66587417--66587593 Score: 286
Period size: 56 Copynumber: 3.1 Consensus size: 57
66587407 TTTGATTCGT
* * *
66587417 GTAAGACCACGTTTAATACGTTGGCATCGATATGTTA-TTCTGATATGTGTGTGCGA
1 GTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCCGATATGTGTGTGCGA
*
66587473 GTAAGACCACATTTAATACGTTGGCATCGATATGTGATTT-CGATATGTGTGTGCAA
1 GTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCCGATATGTGTGTGCGA
* *
66587529 GTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCCGATATGTGTTTACGA
1 GTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCCGATATGTGTGTGCGA
66587586 GTAAGACC
1 GTAAGACC
66587594 TTGTTTGAAA
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
56 89 0.79
57 23 0.21
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (57 bp):
GTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCCGATATGTGTGTGCGA
Found at i:66599010 original size:55 final size:54
Alignment explanation
Indices: 66598880--66599010 Score: 131
Period size: 55 Copynumber: 2.4 Consensus size: 54
66598870 AGGATACCAA
* * * * **
66598880 GTAAGACCATGCTAAGGCATGGCATTGGTAAGTTCTACAAGGCAAGGAAGTCAT
1 GTAAGACCATGCTAAGGCATGGCATTGATAACTACTACAAGGCAAAGAACCCAT
* * * *
66598934 GTAAGATCC-TG-TCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCCCTT
1 GTAAGA-CCATGCT-AAGGCATGGCATTGAT-AACTACTACAAGGCAAAGAACCCAT
66598989 GTAAGACCATGCTAAGGCATGG
1 GTAAGACCATGCTAAGGCATGG
66599011 TAATGGTGAG
Statistics
Matches: 61, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
53 1 0.02
54 24 0.39
55 35 0.57
56 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
GTAAGACCATGCTAAGGCATGGCATTGATAACTACTACAAGGCAAAGAACCCAT
Found at i:66599046 original size:53 final size:54
Alignment explanation
Indices: 66598869--66599075 Score: 181
Period size: 53 Copynumber: 3.8 Consensus size: 54
66598859 ATTAGGGTTT
* * * *
66598869 AAGGATACCAAGTAAGACCATG-CTAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * *
66598923 AAGGA-AGTCATGTAAGATCC-TGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATA-CCATGTAAGA-CCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * * * * *
66598978 AAAGATCCCTTGTAAGACCATG-CTAAGGCATGGTAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCTATAAGGC
* *
66599031 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
66599076 TAAAAAGGAA
Statistics
Matches: 120, Mismatches: 25, Indels: 17
0.74 0.15 0.10
Matches are distributed among these distances:
53 44 0.37
54 36 0.30
55 40 0.33
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:66606756 original size:30 final size:30
Alignment explanation
Indices: 66606722--66606782 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
66606712 TCCTTAACTC
66606722 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
66606752 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
66606782 A
1 A
66606783 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:66608587 original size:46 final size:48
Alignment explanation
Indices: 66608515--66608617 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
66608505 GACATGACAG
* * * *
66608515 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
66608561 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
66608609 GACAGGAAT
1 GACAGGAAT
66608618 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:66617865 original size:19 final size:19
Alignment explanation
Indices: 66617819--66617866 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
66617809 GTATATATTT
66617819 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
66617837 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
66617856 TAAGTTTTATT
1 TAAATTTTATT
66617867 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:66617942 original size:42 final size:42
Alignment explanation
Indices: 66617883--66617971 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
66617873 CTAGGAATAT
* *
66617883 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
*
66617925 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGTGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
66617967 TTTTC
1 TTTTC
66617972 CCAATTAGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:66621813 original size:19 final size:18
Alignment explanation
Indices: 66621779--66621818 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
66621769 GTATATATTT
66621779 TAAATTTATATTGGTAGA
1 TAAATTTATATTGGTAGA
66621797 TAAATCTTAT-TTAGGTAGA
1 TAAAT-TTATATT-GGTAGA
66621816 TAA
1 TAA
66621819 GTTTTATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.42
Consensus pattern (18 bp):
TAAATTTATATTGGTAGA
Found at i:66621902 original size:42 final size:42
Alignment explanation
Indices: 66621843--66621931 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
66621833 CTAGGAGTAT
* * *
66621843 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAATTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
66621885 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
66621927 TTTTC
1 TTTTC
66621932 CCAATTAGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.04, G:0.13, T:0.53
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:66622277 original size:84 final size:85
Alignment explanation
Indices: 66622116--66622334 Score: 372
Period size: 84 Copynumber: 2.6 Consensus size: 85
66622106 ATTACAGCTT
66622116 ACTTGGATTGGCCTCTCCAGCATTTGGATGTAAAGAATGCTTTCCTAAACTACAATCTACTAGAG
1 ACTTGGATTGGCCTCTCCAGCATTTGGATGTAAAGAATGCTTTCCTAAACTACAATCTACTAGAG
66622181 GAAGTTTATATGGACCTATC
66 GAAGTTTATATGGACCTATC
*
66622201 ACTTGGATTGGCCTCTCCAGCATTTGGATGTGAAGAATG-TTTCCTAAACTACAATCTACTAGAG
1 ACTTGGATTGGCCTCTCCAGCATTTGGATGTAAAGAATGCTTTCCTAAACTACAATCTACTAGAG
66622265 GAAGTTTATATGGACCTATC
66 GAAGTTTATATGGACCTATC
* *
66622285 ACTTGGATT-GCTCTCTCCAGTAGTT-GAGTGTAAAGAATGCTTTCCTAAAC
1 ACTTGGATTGGC-CTCTCCAGCATTTGGA-TGTAAAGAATGCTTTCCTAAAC
66622335 AGTGTGGTTC
Statistics
Matches: 127, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
83 4 0.03
84 75 0.59
85 48 0.38
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (85 bp):
ACTTGGATTGGCCTCTCCAGCATTTGGATGTAAAGAATGCTTTCCTAAACTACAATCTACTAGAG
GAAGTTTATATGGACCTATC
Found at i:66623622 original size:30 final size:31
Alignment explanation
Indices: 66623586--66623646 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
66623576 TAACTCAATA
66623586 CAGAGAAATA-TTTTTTTCCTCTCCTAAACT
1 CAGAGAAATATTTTTTTTCCTCTCCTAAACT
66623616 CAGAGAAATATTTTTTTTCCTCTCCTAAACT
1 CAGAGAAATATTTTTTTTCCTCTCCTAAACT
66623647 TACACATACC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 10 0.33
31 20 0.67
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (31 bp):
CAGAGAAATATTTTTTTTCCTCTCCTAAACT
Found at i:66625410 original size:6 final size:7
Alignment explanation
Indices: 66625393--66625418 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
66625383 AGATCCAGCT
66625393 TTTTTAA
1 TTTTTAA
66625400 TTTTTAA
1 TTTTTAA
66625407 TTTTTAA
1 TTTTTAA
66625414 TTTTT
1 TTTTT
66625419 TTTCGTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:66629287 original size:23 final size:23
Alignment explanation
Indices: 66629261--66629306 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
66629251 TTAATCAGGA
66629261 TAAAAAAC-ATTAAAAAATAAAAT
1 TAAAAAACGA-TAAAAAATAAAAT
*
66629284 TAAAAAACGATAGAAAATAAAAT
1 TAAAAAACGATAAAAAATAAAAT
66629307 AATTTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (23 bp):
TAAAAAACGATAAAAAATAAAAT
Found at i:66631507 original size:5 final size:5
Alignment explanation
Indices: 66631494--66631527 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
66631484 TATTTGGCCA
* *
66631494 AAAAG AAAAT AAAAT AAAAG AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
66631528 GAAAGATGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (5 bp):
AAAAT
Found at i:66631514 original size:15 final size:15
Alignment explanation
Indices: 66631494--66631531 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
66631484 TATTTGGCCA
66631494 AAAAGAAAATAAAAT
1 AAAAGAAAATAAAAT
66631509 AAAAGAAAATAAAAT
1 AAAAGAAAATAAAAT
66631524 AAAAGAAA
1 AAAAGAAA
66631532 GATGATATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.11
Consensus pattern (15 bp):
AAAAGAAAATAAAAT
Found at i:66632539 original size:48 final size:49
Alignment explanation
Indices: 66632487--66632596 Score: 143
Period size: 48 Copynumber: 2.3 Consensus size: 49
66632477 ACAAGCTAAC
*
66632487 GTAAGACCTGTCTAAGACATGGCATCGACAC-CGAT-GATGAGAGCCAGT
1 GTAAGACCTGTCTAAGACATGGCATCGAC-CTCGATAGATGAAAGCCAGT
** * *
66632535 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAAAGTCAGT
1 GTAAGACCTGTCTAAGACATGGCATCGACCTCGATAGATGAAAGCCAGT
*
66632584 GTAAGACTTGTCT
1 GTAAGACCTGTCT
66632597 GGGACGCGGC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
47 1 0.02
48 31 0.57
49 22 0.41
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
GTAAGACCTGTCTAAGACATGGCATCGACCTCGATAGATGAAAGCCAGT
Found at i:66632596 original size:49 final size:49
Alignment explanation
Indices: 66632344--66632612 Score: 204
Period size: 46 Copynumber: 5.7 Consensus size: 49
66632334 TATGTGAGCC
* * *
66632344 AGTGTAAAACATGTTTGGGACAT-GCATCGACCAC-AT-TATGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATATATGAAAGCT
* * * *
66632390 AGTGTAAGACATGTTTGGGACAT-GCATC-AGCATTGA-A-ATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGA-CCTCGATATATGAAAGCT
* * *
66632436 AATGTAAGACATGTCTGGGACA-CGCATC-AGCCTCGAGATAT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGA-CCTCGATATATGA-AAGCT
** * ** * * *
66632484 AACGTAAGACCTGTCTAAGACATGGCATCGACAC-CGAT-GATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGAC-CTCGATATATGAAAGCT
*
66632532 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAAAG-T
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATATATGAAAGCT
* **
66632580 CAGTGTAAGACTTGTCTGGGACGCGGCATCGAC
1 -AGTGTAAGACATGTCTGGGACATGGCATCGAC
66632613 TTTAATGTGC
Statistics
Matches: 180, Mismatches: 29, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 67 0.37
47 4 0.02
48 61 0.34
49 45 0.25
50 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACCTCGATATATGAAAGCT
Found at i:66633905 original size:21 final size:21
Alignment explanation
Indices: 66633881--66633941 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
66633871 GTCATAGTGG
*
66633881 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGTGTGTTGCCCTT
66633902 CCACACGGGTGTGTTGCCCTT
1 CCACACGGGTGTGTTGCCCTT
66633923 CCACACGGGTGTG-TGCCCT
1 CCACACGGGTGTGTTGCCCT
66633942 ATTTCAAAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
20 6 0.15
21 33 0.85
ACGTcount: A:0.10, C:0.36, G:0.30, T:0.25
Consensus pattern (21 bp):
CCACACGGGTGTGTTGCCCTT
Found at i:66640250 original size:48 final size:46
Alignment explanation
Indices: 66640144--66640263 Score: 134
Period size: 46 Copynumber: 2.5 Consensus size: 46
66640134 GTGAGCCAGT
* * * *
66640144 GTAAGACATATTTGGGACATGCATCGGCCACATTATGAAAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAAGCTAGC
*
66640190 GTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-ATAAGCTAGC
1 GTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGA-AAGCTAGC
* *
66640238 GTAAGACCTGTCTGAGACATGGCATC
1 GTAAGACATGTCTGGGACAT-GCATC
66640264 AACTTGTTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
46 28 0.44
47 2 0.03
48 28 0.44
49 5 0.08
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAAGCTAGC
Found at i:66640354 original size:49 final size:48
Alignment explanation
Indices: 66640175--66640409 Score: 173
Period size: 49 Copynumber: 4.9 Consensus size: 48
66640165 CATCGGCCAC
* * * * *
66640175 ATTATGAAAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCG
1 ATTATGAAAGCCAGCGTAAGACCTGTCTGAGACATGGCATCGACACT-G
* *
66640222 AGATAT-ATAAGCTAGCGTAAGACCTGTCTGAGACATGGCATC-A-ACTTG
1 A-TTATGA-AAGCCAGCGTAAGACCTGTCTGAGACATGGCATCGACAC-TG
* * *
66640270 -TTATG--TGTCAGTGTAAGACCTGTCTGAGACATGGCATCGACACTG
1 ATTATGAAAGCCAGCGTAAGACCTGTCTGAGACATGGCATCGACACTG
* * *
66640315 ATTGATGAAAGCCAGCGTAAGACCTGTCTGCGACATGGCATCGGC-CTCA
1 ATT-ATGAAAGCCAGCGTAAGACCTGTCTGAGACATGGCATCGACACT-G
* * * * **
66640364 ATATATTAAAGTCAGTGTAAGACCTGTCTGGGACACAGCATCGACA
1 AT-TATGAAAGCCAGCGTAAGACCTGTCTGAGACATGGCATCGACA
66640410 TTAATGTGAT
Statistics
Matches: 150, Mismatches: 23, Indels: 27
0.75 0.12 0.14
Matches are distributed among these distances:
44 29 0.19
45 3 0.02
46 7 0.05
47 5 0.03
48 32 0.21
49 73 0.49
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (48 bp):
ATTATGAAAGCCAGCGTAAGACCTGTCTGAGACATGGCATCGACACTG
Found at i:66652457 original size:85 final size:85
Alignment explanation
Indices: 66652313--66652491 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
66652303 GGCCGGCCAT
66652313 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGGAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGGAGTGCATTAT
66652378 ATAAGGATTAATAAAATAAA
66 ATAAGGATTAATAAAATAAA
*
66652398 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGGAGTGCATTAT
*
66652463 GTAAGGATTAATAAAATAAA
66 ATAAGGATTAATAAAATAAA
*
66652483 GGGCATGGG
1 GAGCATGGG
66652492 CAATAAAATA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGGAGTGCATTAT
ATAAGGATTAATAAAATAAA
Found at i:66653694 original size:47 final size:47
Alignment explanation
Indices: 66653640--66653950 Score: 473
Period size: 47 Copynumber: 6.6 Consensus size: 47
66653630 TATTTGAATA
* *
66653640 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
66653687 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
66653734 AATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
66653783 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
66653830 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
66653877 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
66653924 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
66653951 TCCCGAAGGG
Statistics
Matches: 244, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 198 0.81
49 44 0.18
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:66653805 original size:143 final size:141
Alignment explanation
Indices: 66653640--66653950 Score: 473
Period size: 143 Copynumber: 2.2 Consensus size: 141
66653630 TATTTGAATA
* * *
66653640 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATAT
*
66653704 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGACAAGGCCGAA
65 ATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAA
66653769 TGGCCAATGTGATG
128 TGGCCAATGTGATG
* *
66653783 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
* *
66653847 ATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCGAATG
65 ATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATG
66653912 GCCAATGTGATG
130 GCCAATGTGATG
* * *
66653924 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
66653951 TCCCGAAGGG
Statistics
Matches: 152, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
140 1 0.01
141 53 0.35
143 96 0.63
144 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGG
CCAATGTGATG
Found at i:66653922 original size:22 final size:22
Alignment explanation
Indices: 66653801--66653922 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
66653791 CATGTGTATG
*
66653801 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
* *
66653823 TGTGATGAATGT-GAACAT-GCATATA
1 TGTGAT-AAGGTCG-A-ATGGC-CA-A
* *
66653848 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
* ***
66653870 TGTGATGAATGT-GAAAGTGTATATA
1 TGTGAT-AAGGTCG-AA-TGGCCA-A
66653895 TGTGATAAGGTCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
66653917 TGTGAT
1 TGTGAT
66653923 GGATGTGGAA
Statistics
Matches: 71, Mismatches: 17, Indels: 24
0.63 0.15 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 18 0.25
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGTCGAATGGCCAA
Found at i:66657477 original size:27 final size:26
Alignment explanation
Indices: 66657435--66657500 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
66657425 TTCTTTTCAC
* *
66657435 CCCATGTTTAAC-GTCTGGGTGGACTT
1 CCCATGTTT-ACTGTCTGAGTGGACTA
*
66657461 CTCCATGTTTACTGTCTTAGTGGACTA
1 C-CCATGTTTACTGTCTGAGTGGACTA
66657488 CCTCATGTTTACT
1 CC-CATGTTTACT
66657501 ATCCCAACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39
Consensus pattern (26 bp):
CCCATGTTTACTGTCTGAGTGGACTA
Found at i:66657567 original size:27 final size:27
Alignment explanation
Indices: 66657483--66657568 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
66657473 TGTCTTAGTG
* *
66657483 GACTACCTCATGTTTACTATCCCAACA
1 GACTACCCCATGTTTACTATCCCGACA
* ** * * *
66657510 AACTTTCCCATGTTTATTATCTCGGCA
1 GACTACCCCATGTTTACTATCCCGACA
* *
66657537 GACTACCCCATGTTTACTGTCCCGACG
1 GACTACCCCATGTTTACTATCCCGACA
66657564 GACTA
1 GACTA
66657569 TATTGGTTGT
Statistics
Matches: 43, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.31
Consensus pattern (27 bp):
GACTACCCCATGTTTACTATCCCGACA
Found at i:66659225 original size:10 final size:11
Alignment explanation
Indices: 66659200--66659239 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
66659190 GTGTATTAAC
*
66659200 TTTATTTTTTA
1 TTTATTTTTCA
66659211 TTTATTTTTCA
1 TTTATTTTTCA
*
66659222 -TTATTTTTCT
1 TTTATTTTTCA
66659232 TTTATTTT
1 TTTATTTT
66659240 ATTTTTAGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTATTTTTCA
Found at i:66660725 original size:13 final size:13
Alignment explanation
Indices: 66660709--66660733 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66660699 GCCGTGCAAC
66660709 ATAGCCAACTTGA
1 ATAGCCAACTTGA
66660722 ATAGCCAACTTG
1 ATAGCCAACTTG
66660734 TCACTCCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (13 bp):
ATAGCCAACTTGA
Done.