Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 214 of 325
Found at i:66666930 original size:26 final size:27
Alignment explanation
Indices: 66666894--66666953 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
66666884 TGTCAGCTAG
* *
66666894 TGAAATTTTAA-TGT-TCGAATGTATGC
1 TGAATTTTTAAGTGTCT-GAATGCATGC
66666920 TGAATTTTTAAGTGTCTGAATGCATGC
1 TGAATTTTTAAGTGTCTGAATGCATGC
66666947 TAGAATT
1 T-GAATT
66666954 CAACATGTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.34
27 13 0.45
28 6 0.21
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
TGAATTTTTAAGTGTCTGAATGCATGC
Found at i:66666947 original size:27 final size:26
Alignment explanation
Indices: 66666894--66666953 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 26
66666884 TGTCAGCTAG
* *
66666894 TGAAATTTTAATGTTCGAATGTATGC
1 TGAATTTTTAATGTTCGAATGCATGC
66666920 TGAATTTTTAA-GTGTCTGAATGCATGC
1 TGAATTTTTAATGT-TC-GAATGCATGC
66666947 TAGAATT
1 T-GAATT
66666954 CAACATGTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 2 0.07
26 12 0.41
27 10 0.34
28 5 0.17
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (26 bp):
TGAATTTTTAATGTTCGAATGCATGC
Found at i:66668696 original size:46 final size:45
Alignment explanation
Indices: 66668590--66668806 Score: 197
Period size: 46 Copynumber: 4.7 Consensus size: 45
66668580 GCATATCTGT
* * *
66668590 GCCGATGCCATGTCCCAGACATGGTCTTATACTGAC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCG-AG
* *
66668636 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAG
* * * * * *
66668682 GCCGAAGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAG
* * * *
66668728 GTCGATGCCATGTCACAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAG
66668776 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
66668807 AGCTCACACA
Statistics
Matches: 140, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 65 0.46
47 27 0.19
48 21 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAG
Found at i:66668756 original size:94 final size:92
Alignment explanation
Indices: 66668639--66668809 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 92
66668629 TCTCGTAGCT
* * *
66668639 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACGT-CTCGAGGCCGAAGCATGTCCCAGACA
1 GATGCATGTCACAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGAAGCATGTCCCAGACA
66668702 TGTCTTACACTAGCACTCGTCTCAATGTC
64 TGTCTTACACTAGCACTCGTCTCAATGTC
* *
66668731 GATGCCATGTCACAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACA
1 GATG-CATGTCACAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGAAGCATGTCCCAGACA
66668796 TGTCTTACACTAGC
64 TGTCTTACACTAGC
66668810 TCACACAAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 51 0.73
95 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (92 bp):
GATGCATGTCACAGACATGTCTTACACTGGCTCTCATAATGAGGCCGAAGCATGTCCCAGACATG
TCTTACACTAGCACTCGTCTCAATGTC
Found at i:66669183 original size:30 final size:30
Alignment explanation
Indices: 66669149--66669208 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
66669139 AAAATTCATA
* *
66669149 TCTTTGGTAAAACGA-CTATTTTTCCCCTAG
1 TCTTTGATAAAACGATC-ATTTTGCCCCTAG
*
66669179 TCTTTGATAAAATGATCATTTTGCCCCTAG
1 TCTTTGATAAAACGATCATTTTGCCCCTAG
66669209 GCTCAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (30 bp):
TCTTTGATAAAACGATCATTTTGCCCCTAG
Found at i:66672653 original size:43 final size:43
Alignment explanation
Indices: 66672588--66672814 Score: 350
Period size: 43 Copynumber: 5.3 Consensus size: 43
66672578 TGCATGCATG
* * * *
66672588 TTTAGCGGCATTTGTAGAAAAAGCGTCACTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGATC
66672631 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGATC
*
66672674 TTTAGCGGCGTTTGTAGGAAAAGTGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGATC
* *
66672717 TTTAGCGGCTTTTGT-GGGAAAGCGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGATC
* *
66672759 TTTAGTGGTGTTTGT-GGAAAAAGCGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTAGG-AAAAGCGCCGCTAAAGGTCATGATC
66672802 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
66672815 TATCAAATAA
Statistics
Matches: 169, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
42 39 0.23
43 130 0.77
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGATC
Found at i:66672781 original size:85 final size:86
Alignment explanation
Indices: 66672588--66672815 Score: 343
Period size: 85 Copynumber: 2.7 Consensus size: 86
66672578 TGCATGCATG
* * * * *
66672588 TTTAGCGGCATTTGTAGAAAAAGCGTCACTAAAGGTCATGATCTTTAGCGGCGTTTGTAGGAAAA
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCTTTTGTAGGAAAA
66672653 GCGCCGCTAAAGGTCATGATC
66 GCGCCGCTAAAGGTCATGATC
* *
66672674 TTTAGCGGCGTTTGTAGG-AAAAGTGCCGCTAAAGGTCATGATCTTTAGCGGCTTTTGT-GGGAA
1 TTTAGCGGCGTTTGT-GGAAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCTTTTGTAGGAAA
66672737 AGCGCCGCTAAAGGTCATGATC
65 AGCGCCGCTAAAGGTCATGATC
* *
66672759 TTTAGTGGTGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTT
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGC-TTTT
66672816 ATCAAATAAA
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
84 2 0.02
85 72 0.56
86 54 0.42
87 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCTTTTGTAGGAAAA
GCGCCGCTAAAGGTCATGATC
Found at i:66675339 original size:48 final size:48
Alignment explanation
Indices: 66675279--66675520 Score: 439
Period size: 48 Copynumber: 5.0 Consensus size: 48
66675269 ATATACACAC
* * *
66675279 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
66675327 ATTTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
66675375 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
66675423 ATCTCATACATATTTCACATTAGCCATTCGGCTTTATCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
66675471 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
66675519 AT
1 AT
66675521 ATTTATCTTG
Statistics
Matches: 187, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 187 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:66680949 original size:57 final size:56
Alignment explanation
Indices: 66680888--66681008 Score: 127
Period size: 57 Copynumber: 2.1 Consensus size: 56
66680878 ATAGAAATGG
* * * *
66680888 TGAAATGGAAAAATATGAAA-CATTTGGAAATGATTAAGTTTTTCTCCAAAATGAAAA
1 TGAAATGG--AAAGATGAAATCATTTGGAAATCAATAAGGTTTTCTCCAAAATGAAAA
* * * *
66680945 TGAAAATGGAGAGATGAAATCATTTGGAAATCAATATGGTTTTGTCCAAAATGGAAA
1 TG-AAATGGAAAGATGAAATCATTTGGAAATCAATAAGGTTTTCTCCAAAATGAAAA
66681002 TGGAAAT
1 T-GAAAT
66681009 AATAATGAGA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
56 8 0.15
57 38 0.72
58 7 0.13
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.29
Consensus pattern (56 bp):
TGAAATGGAAAGATGAAATCATTTGGAAATCAATAAGGTTTTCTCCAAAATGAAAA
Found at i:66689778 original size:45 final size:45
Alignment explanation
Indices: 66689728--66689817 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
66689718 CCAAAACATG
66689728 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAA
** *
66689773 TGTCACATATGTCATGAACTCAGAGCACAACTCAATGAGTTCAAA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAA
66689818 CCACATAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.23
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAA
Found at i:66695851 original size:22 final size:23
Alignment explanation
Indices: 66695826--66695871 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
66695816 CAACCAAATC
66695826 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
66695848 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
66695871 A
1 A
66695872 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:66695877 original size:23 final size:23
Alignment explanation
Indices: 66695833--66695877 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
66695823 ATCAATTCAA
*
66695833 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
66695856 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
66695878 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:66700098 original size:15 final size:15
Alignment explanation
Indices: 66700078--66700108 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
66700068 AACATGTCAT
66700078 GACGTCTTTTAGATG
1 GACGTCTTTTAGATG
66700093 GACGTCTTTTAGATG
1 GACGTCTTTTAGATG
66700108 G
1 G
66700109 GCCTTCAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.29, T:0.39
Consensus pattern (15 bp):
GACGTCTTTTAGATG
Found at i:66710707 original size:47 final size:47
Alignment explanation
Indices: 66710633--66710786 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
66710623 TCCTTCGGGA
*
66710633 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
66710680 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66710727 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66710774 CTTATCACATATA
1 CTTATCACATATA
66710787 CATATATTGT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66712655 original size:13 final size:13
Alignment explanation
Indices: 66712637--66712661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66712627 TACTAAATTT
66712637 TCATGGATTCAAA
1 TCATGGATTCAAA
66712650 TCATGGATTCAA
1 TCATGGATTCAA
66712662 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:66716482 original size:44 final size:41
Alignment explanation
Indices: 66716434--66716546 Score: 102
Period size: 44 Copynumber: 2.7 Consensus size: 41
66716424 TGTTTAGCCG
**
66716434 AAGCTATAACAATATCGCACACTTAGTGCCATCACATTGAACCA
1 AAGCTATAACAATATCGCACACTTAGTGCCAT---ATAAAACCA
** ** *
66716478 AAGCTATCCCGGTATCCCACACTTAGTGCCATATAAAACCA
1 AAGCTATAACAATATCGCACACTTAGTGCCATATAAAACCA
** *
66716519 AAGCTATTTCAAT-TCGCACACTAAGTGC
1 AAGCTATAACAATATCGCACACTTAGTGC
66716547 TGTATATAGC
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
40 13 0.23
41 16 0.29
44 27 0.48
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.24
Consensus pattern (41 bp):
AAGCTATAACAATATCGCACACTTAGTGCCATATAAAACCA
Found at i:66717241 original size:10 final size:10
Alignment explanation
Indices: 66717226--66717250 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
66717216 CAAAAACATA
66717226 AAAATCGAAC
1 AAAATCGAAC
66717236 AAAATCGAAC
1 AAAATCGAAC
66717246 AAAAT
1 AAAAT
66717251 TCAAACCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.16, G:0.08, T:0.12
Consensus pattern (10 bp):
AAAATCGAAC
Found at i:66727386 original size:29 final size:29
Alignment explanation
Indices: 66727349--66727408 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
66727339 ATAATTTTAT
**
66727349 AATAATTTTAATGATTTTTAATTTTTAAA
1 AATAATTTTAAAAATTTTTAATTTTTAAA
*
66727378 AATATTTTTAAAAATTTTTAATTTTTAAA
1 AATAATTTTAAAAATTTTTAATTTTTAAA
66727407 AA
1 AA
66727409 ATTAACTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (29 bp):
AATAATTTTAAAAATTTTTAATTTTTAAA
Found at i:66727418 original size:29 final size:29
Alignment explanation
Indices: 66727362--66727418 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
66727352 AATTTTAATG
**
66727362 ATTTTTAATTTTTAAAAATATTTTTAAAA
1 ATTTTTAATTTTTAAAAATATTACTAAAA
66727391 ATTTTTAATTTTTAAAAA-ATTAACTAAA
1 ATTTTTAATTTTTAAAAATATT-ACTAAA
66727419 TGCTAATGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 22 0.88
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (29 bp):
ATTTTTAATTTTTAAAAATATTACTAAAA
Found at i:66729171 original size:80 final size:81
Alignment explanation
Indices: 66729078--66729238 Score: 297
Period size: 80 Copynumber: 2.0 Consensus size: 81
66729068 TTTTAATTAA
66729078 AAACATTATAAATTGAAATATTTTATTTCTTTTAAACGAAAAACTTCATGGAATTTTGTGTGTGT
1 AAACATTATAAATTGAAATATTTTATTTCTTTTAAACGAAAAACTTCATGGAATTTTGTGTGTGT
*
66729143 -TTTTTTATTTGAAAT
66 GTGTTTTATTTGAAAT
*
66729158 AAACATTATAAATTGAAATATTTTATTTCTTTTAAACGAAAATCTTCATGGAATTTTGTGTGTGT
1 AAACATTATAAATTGAAATATTTTATTTCTTTTAAACGAAAAACTTCATGGAATTTTGTGTGTGT
66729223 GTGTTTTATTTGAAAT
66 GTGTTTTATTTGAAAT
66729239 TCCTTGTGAT
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
80 64 0.82
81 14 0.18
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.47
Consensus pattern (81 bp):
AAACATTATAAATTGAAATATTTTATTTCTTTTAAACGAAAAACTTCATGGAATTTTGTGTGTGT
GTGTTTTATTTGAAAT
Found at i:66737120 original size:38 final size:38
Alignment explanation
Indices: 66737069--66737145 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
66737059 TTGAAAATGC
66737069 TTTTATATCTGAGTATCTGACTAGGATGGTTCTACCCA
1 TTTTATATCTGAGTATCTGACTAGGATGGTTCTACCCA
66737107 TTTTATATCTGAGTATCTGACTAGGATGGTTCTACCCA
1 TTTTATATCTGAGTATCTGACTAGGATGGTTCTACCCA
66737145 T
1 T
66737146 GAGGCATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.40
Consensus pattern (38 bp):
TTTTATATCTGAGTATCTGACTAGGATGGTTCTACCCA
Found at i:66740744 original size:6 final size:6
Alignment explanation
Indices: 66740735--66740768 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
66740725 CAACCTTAGC
*
66740735 CTTGAG CTTGAG CTTGTG CTTGAG CTTGAG CTTG
1 CTTGAG CTTGAG CTTGAG CTTGAG CTTGAG CTTG
66740769 GCCTACTCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.12, C:0.18, G:0.32, T:0.38
Consensus pattern (6 bp):
CTTGAG
Found at i:66749060 original size:9 final size:9
Alignment explanation
Indices: 66749046--66749080 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
66749036 GTTAAACGAA
66749046 TCGAGTTAT
1 TCGAGTTAT
*
66749055 TCGAGTTAA
1 TCGAGTTAT
66749064 TCGAGTTAT
1 TCGAGTTAT
*
66749073 TTGAGTTA
1 TCGAGTTA
66749081 ACTCGATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.43
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:66749067 original size:18 final size:18
Alignment explanation
Indices: 66749044--66749086 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
66749034 TAGTTAAACG
66749044 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
*
66749062 AATCGAGTTATTTGAGTT
1 AATCGAGTTATTCGAGTT
66749080 AACTCGA
1 AA-TCGA
66749087 TTTTTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:66753641 original size:42 final size:43
Alignment explanation
Indices: 66753555--66753711 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
66753545 AACTCGTACA
* * * * *
66753555 ATGCC-ATATCCCAGGCATGGTCTTACATGTTATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATATATCG
* * *
66753597 ATGCCATTGTCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATATATCG
* * * *
66753639 ATGCTAATGTCCCATACATGGCCTTACACGTAATC-TCATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAT-ATATCG
* *
66753682 ATGCCAATGTCTCGGACATGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
66753712 GTATCACATC
Statistics
Matches: 92, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
41 1 0.01
42 39 0.42
43 52 0.57
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATATATCG
Found at i:66755854 original size:43 final size:43
Alignment explanation
Indices: 66755807--66755911 Score: 201
Period size: 43 Copynumber: 2.4 Consensus size: 43
66755797 ATAATCAAGG
66755807 TTACTAGTCCAGGCTAAATCTTAATTTCAATGTAAGATCAGAA
1 TTACTAGTCCAGGCTAAATCTTAATTTCAATGTAAGATCAGAA
66755850 TTACTAGTCCAGGCTAAATCTTAATTTCAATGTAAGATCAGAA
1 TTACTAGTCCAGGCTAAATCTTAATTTCAATGTAAGATCAGAA
*
66755893 TTACTAGTACAGGCTAAAT
1 TTACTAGTCCAGGCTAAAT
66755912 TTTGTCTTTA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.32
Consensus pattern (43 bp):
TTACTAGTCCAGGCTAAATCTTAATTTCAATGTAAGATCAGAA
Found at i:66762319 original size:43 final size:43
Alignment explanation
Indices: 66762271--66762464 Score: 219
Period size: 43 Copynumber: 4.5 Consensus size: 43
66762261 TATCCTAGAT
* *
66762271 ATGGTCTTACATGTTATCACA-TATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATTA-CGATGCCAATGTCCCAGAC
** **
66762314 ATGGTCTTACACAAAATCGTATTACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATTACGATGCCAATGTCCCAGAC
* ** * *
66762357 ATGTTCTTACACAAAATCATATTACGATGCCAATGTCTCAGAC
1 ATGGTCTTACACGTAATCACATTACGATGCCAATGTCCCAGAC
* * * *
66762400 ATGGTCTTACACGTAATCCCAATACAATGCCAATGCCCCAGAC
1 ATGGTCTTACACGTAATCACATTACGATGCCAATGTCCCAGAC
* *
66762443 ATTGTCTTACATGTAATCACAT
1 ATGGTCTTACACGTAATCACAT
66762465 CTCAGTAATC
Statistics
Matches: 128, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
43 126 0.98
44 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATTACGATGCCAATGTCCCAGAC
Found at i:66771451 original size:13 final size:13
Alignment explanation
Indices: 66771433--66771459 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
66771423 GGAGTAATCG
66771433 CACACGGGCATGT
1 CACACGGGCATGT
66771446 CACACGGGCATGT
1 CACACGGGCATGT
66771459 C
1 C
66771460 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:66775660 original size:47 final size:47
Alignment explanation
Indices: 66775602--66776331 Score: 1228
Period size: 47 Copynumber: 15.4 Consensus size: 47
66775592 CAGCCAAGAC
*
66775602 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66775649 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66775696 AGTGTATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66775745 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
66775792 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66775839 AGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66775886 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66775933 AGTGTATATATATGTGATAACGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66775982 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66776029 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66776078 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
66776125 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66776172 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66776219 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
66776266 AGTGTATATATGTGA-CAGGGCTGAGTGGCCAACGTGATGGACGTGAA
1 AGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAA
* *
66776313 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
66776332 TCCCGAAGGG
Statistics
Matches: 648, Mismatches: 27, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
46 5 0.01
47 502 0.77
48 2 0.00
49 139 0.21
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:66776212 original size:333 final size:333
Alignment explanation
Indices: 66775606--66776276 Score: 1297
Period size: 333 Copynumber: 2.0 Consensus size: 333
66775596 CAAGACAGTG
*
66775606 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAACGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
66775671 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCAGATGTGAT
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCAGATGTGAT
66775736 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
131 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
66775801 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATG
196 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATAATAAGGCCTAATG
66775866 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
261 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66775931 AAAGTGTA
326 AAAGTGTA
*
66775939 TATATATGTGATAACGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAACGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
66776004 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCAGATGTGAT
66776069 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
131 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
66776134 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATG
196 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATAATAAGGCCTAATG
66776199 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
261 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66776264 AAAGTGTA
326 AAAGTGTA
66776272 TATAT
1 TATAT
66776277 GTGACAGGGC
Statistics
Matches: 333, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
333 333 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (333 bp):
TATATATGTGATAACGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCAGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATAATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTA
Found at i:66776506 original size:37 final size:37
Alignment explanation
Indices: 66776450--66776528 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
66776440 CCGAGCTCTA
* * *
66776450 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAAATACGTGTGGAG-ATTATGTCCGGGT
*
66776487 AAGACCCGATAAATTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAAATACGTGTGGAGATTATGTCCGGGT
66776524 AAGAC
1 AAGAC
66776529 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAAATACGTGTGGAGATTATGTCCGGGT
Found at i:66795292 original size:20 final size:20
Alignment explanation
Indices: 66795267--66795313 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
66795257 TGGAAAATAA
*
66795267 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATAATTTACT
*
66795287 TTTCTGGAAAATAATTTGCT
1 TTTCTGGAAAATAATTTACT
66795307 TTTCTGG
1 TTTCTGG
66795314 TGTTTTGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.47
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:66798167 original size:18 final size:18
Alignment explanation
Indices: 66798141--66798175 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66798131 TAACCCAAGA
* *
66798141 GGAAGGGGAAGAGGAAGG
1 GGAAAGGGAAGAAGAAGG
66798159 GGAAAGGGAAGAAGAAG
1 GGAAAGGGAAGAAGAAG
66798176 CGTCAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (18 bp):
GGAAAGGGAAGAAGAAGG
Found at i:66798169 original size:12 final size:12
Alignment explanation
Indices: 66798137--66798162 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
66798127 TTTGTAACCC
66798137 AAGAGGAAGGGG
1 AAGAGGAAGGGG
66798149 AAGAGGAAGGGG
1 AAGAGGAAGGGG
66798161 AA
1 AA
66798163 AGGGAAGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
AAGAGGAAGGGG
Found at i:66802228 original size:93 final size:93
Alignment explanation
Indices: 66802069--66802240 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
66802059 CGCCCATAAG
* * *
66802069 CGAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
66802134 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
66802162 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
66802227 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
66802241 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:66802237 original size:46 final size:46
Alignment explanation
Indices: 66802062--66802237 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
66802052 TGTAACCCGC
* * **
66802062 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
66802108 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
66802158 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
66802201 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
66802238 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:66812465 original size:22 final size:21
Alignment explanation
Indices: 66812439--66812479 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
66812429 TGTTTAGGAT
66812439 TTTAGGGTTAATTAAATTAAGA
1 TTTAGGGTTAATT-AATTAAGA
66812461 TTTAGGGTTAATTAATTAA
1 TTTAGGGTTAATTAATTAA
66812480 ATTAACTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (21 bp):
TTTAGGGTTAATTAATTAAGA
Found at i:66812633 original size:150 final size:152
Alignment explanation
Indices: 66812421--66812698 Score: 427
Period size: 151 Copynumber: 1.8 Consensus size: 152
66812411 GAGTTTAGAT
* *
66812421 TTTTATTGTGTTTAGGATTTTAGGGTTAATTAAATTAAGATTTAGGGTTAATTAATTAAATTAAC
1 TTTTATTGTGTTTAGGATTTTAGAGTTAATTAAATTAAGATTTAAGGTTAATTAATTAAATTAAC
**
66812486 TATTAA-TTTAAAAAATCAATTAAATCAGGGTTTA-AGGTTTTTAGGATTAATTAATTAAATTAG
66 TATTAATTTTAAAAAATCAATTAAATCAGAATTTAGA-GTTTTTAGGATTAATTAATTAAATTAG
66812549 GGTTTAATGTTAGGGTTTTAGGG
130 GGTTTAATGTTAGGGTTTTAGGG
* * * *
66812572 TTTTATTGTG-TTATGCTTTTAGAGTTAATTAAATTAGGGTTTAAGGTTAATTAATTAAATTAAC
1 TTTTATTGTGTTTAGGATTTTAGAGTTAATTAAATTAAGATTTAAGGTTAATTAATTAAATTAAC
* * *
66812636 TATTAATTTTAAAAAATTAATTAAATTAGAATTTAGAGTTTTTAGGGTTAATTAATTAAATTA
66 TATTAATTTTAAAAAATCAATTAAATCAGAATTTAGAGTTTTTAGGATTAATTAATTAAATTA
66812699 AGATGAACTG
Statistics
Matches: 114, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
150 54 0.47
151 59 0.52
152 1 0.01
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.46
Consensus pattern (152 bp):
TTTTATTGTGTTTAGGATTTTAGAGTTAATTAAATTAAGATTTAAGGTTAATTAATTAAATTAAC
TATTAATTTTAAAAAATCAATTAAATCAGAATTTAGAGTTTTTAGGATTAATTAATTAAATTAGG
GTTTAATGTTAGGGTTTTAGGG
Found at i:66813199 original size:125 final size:126
Alignment explanation
Indices: 66812700--66813265 Score: 821
Period size: 126 Copynumber: 4.5 Consensus size: 126
66812690 ATTAAATTAA
* * * * *
66812700 GATGAACTGTCAGCAAAATTATTGAAAAAAGCTTCCACGTGGACGTTCTTTTGCTACAGTAGTAT
1 GATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTAT
* * * *
66812765 CT-AAAAAATAATTTTAAGAAAACGTTTCTGAACAAATAGTATCCTAAACGCTTTTAAGCAG
66 CTGAAAAAATAATTTTGAGAAAACGTTTCTGAACAAATAGTGTCCAAAACGC-TTCAAGCAG
* * * *
66812826 GATGTACTATCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACACTCTTTTGCTACATTAGTAT
1 GATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTAT
* * *
66812891 TTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGCAT
66 CTGAAAAAATAATTTTGAGAAAACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGCAG
* *
66812952 GATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACATGGACGCTTTTTTGCTACAGTAGTAT
1 GATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTAT
* * * *
66813017 CTGAAAAAATAATTTTGAGAAGATGTTTCTAAACAAATAGAGTCCAAAACGCTTCAAGCAG
66 CTGAAAAAATAATTTTGAGAAAACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGCAG
* * * *
66813078 GATGCACTCTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCTTATGCTACAGTAATAT
1 GATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTAT
66813143 CTG-AAAAATAATTTTGAGAAAACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGCAG
66 CTGAAAAAATAATTTTGAGAAAACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGCAG
* * * * * *
66813203 GATGCACTGTCAGCAGAATTACTGAAAAAAGCTCCCACGTGGATGTTTTTTTGATACAGTAGT
1 GATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
66813266 TCCTATTTGG
Statistics
Matches: 396, Mismatches: 43, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
125 109 0.28
126 242 0.61
127 45 0.11
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (126 bp):
GATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTAT
CTGAAAAAATAATTTTGAGAAAACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGCAG
Found at i:66816848 original size:40 final size:41
Alignment explanation
Indices: 66816811--66817035 Score: 277
Period size: 40 Copynumber: 5.6 Consensus size: 41
66816801 GCTACTCGTT
*
66816811 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGTTATAGTAACTCGCA
*
66816851 CAAATGCCTTC-GGATCTTAGTCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGTTATAGTAACTCGCA
*
66816891 CAAATGCCTTC-GGATCTTAGTCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGTTATAGTAACTCGCA
* *
66816931 CAAATGCCCTCGGGA-CTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGG-TTATAGTAACTCGCA
* * * * * *
66816971 CCAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGTTATAGTAAC-TCGCA
66817012 CAAA-GCCTTCGGGA-CTTAGCCCGG
1 CAAATGCCTTCGGGATCTTAGCCCGG
66817036 ACATCATTCG
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 7 0.04
40 141 0.87
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGTTATAGTAACTCGCA
Found at i:66817030 original size:120 final size:120
Alignment explanation
Indices: 66816811--66817035 Score: 321
Period size: 120 Copynumber: 1.9 Consensus size: 120
66816801 GCTACTCGTT
* *
66816811 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCCTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* * *
66816876 TTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGTTATAGTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGATCTTAGCCCGGTTATAGTAACTCGCA
* *
66816931 CAAATGCCCTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCCTCGGGACATAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
* *
66816995 GATATGGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGG
65 GATATAGTAAC-TAGCACAAATGCCTTC-GGATCTTAGCCCGG
66817036 ACATCATTCG
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
120 80 0.86
121 13 0.14
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCCTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATATAGTAACTAGCACAAATGCCTTCGGATCTTAGCCCGGTTATAGTAACTCGCA
Found at i:66823830 original size:46 final size:46
Alignment explanation
Indices: 66823777--66823952 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
66823767 TGGTTGAGCA
66823777 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
66823823 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
66823868 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66823916 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66823953 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 27 0.25
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66823933 original size:93 final size:93
Alignment explanation
Indices: 66823774--66823944 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
66823764 GGATGGTTGA
* * *
66823774 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66823839 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
66823867 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66823932 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66823945 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:66827966 original size:18 final size:18
Alignment explanation
Indices: 66827943--66827980 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
66827933 GAAAAATGAA
* *
66827943 ACATATAAGGGTTAGGAT
1 ACATATAAGAGCTAGGAT
66827961 ACATATAAGAGCTAGGAT
1 ACATATAAGAGCTAGGAT
66827979 AC
1 AC
66827981 GCACCTAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAAGAGCTAGGAT
Found at i:66828607 original size:7 final size:7
Alignment explanation
Indices: 66828597--66828622 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
66828587 TTATATACAT
66828597 AATACTA
1 AATACTA
66828604 AATACTA
1 AATACTA
66828611 AATACTA
1 AATACTA
66828618 AATAC
1 AATAC
66828623 GAAACGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:66829824 original size:11 final size:10
Alignment explanation
Indices: 66829782--66829843 Score: 61
Period size: 11 Copynumber: 5.8 Consensus size: 10
66829772 TAAAGAGAGC
*
66829782 TTTGAGAAAA
1 TTTGAGAGAA
*
66829792 TATGAGAGAAA
1 TTTGAGAG-AA
66829803 TTTGAGAGAA
1 TTTGAGAGAA
66829813 TTTGGAGAGAA
1 TTT-GAGAGAA
*
66829824 TTTAGAAAGAA
1 TTT-GAGAGAA
66829835 TTATGAGAG
1 TT-TGAGAG
66829844 GACTTTTGTG
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
10 11 0.26
11 31 0.72
12 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (10 bp):
TTTGAGAGAA
Found at i:66829825 original size:21 final size:21
Alignment explanation
Indices: 66829782--66829843 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
66829772 TAAAGAGAGC
* *
66829782 TTTGAGAAAATATGAGAGAAA
1 TTTGAGAGAATTTGAGAGAAA
66829803 TTTGAGAGAATTTG-GAGAGAA
1 TTTGAGAGAATTTGAGAGA-AA
*
66829824 TTTAGAAAGAATTATGAGAG
1 TTT-GAGAGAATT-TGAGAG
66829844 GACTTTTGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 4 0.12
21 17 0.50
22 8 0.24
23 2 0.06
24 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (21 bp):
TTTGAGAGAATTTGAGAGAAA
Found at i:66830436 original size:27 final size:28
Alignment explanation
Indices: 66830397--66830516 Score: 75
Period size: 28 Copynumber: 4.3 Consensus size: 28
66830387 TAAAATTTAG
* *
66830397 AAAAATTATTAAATTTTAATAAAAATAT
1 AAAAAATATTAAAATTTAATAAAAATAT
*
66830425 AAAAAATA-TAAAATTTATTAAAAAT-T
1 AAAAAATATTAAAATTTAATAAAAATAT
* ** * ** ** *
66830451 AGAATTTTTTATAAAAATCTTAAAAAAAT
1 AAAAAATATTA-AAATTTAATAAAAATAT
*
66830480 AAAAAAT-TGTAAAATTTTATAAAAATTAT
1 AAAAAATAT-TAAAATTTAATAAAAA-TAT
66830509 AAAAAATA
1 AAAAAATA
66830517 ATGATCTCTA
Statistics
Matches: 67, Mismatches: 19, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
26 5 0.07
27 17 0.25
28 29 0.43
29 16 0.24
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.36
Consensus pattern (28 bp):
AAAAAATATTAAAATTTAATAAAAATAT
Found at i:66830436 original size:46 final size:46
Alignment explanation
Indices: 66830354--66830483 Score: 129
Period size: 46 Copynumber: 2.8 Consensus size: 46
66830344 ACCCATGCTC
** *
66830354 TTATTAAAAATTAAAAAAAATTATAAAAAACAATAAAATTTA-GAAAAA
1 TTATTAAATTTTAATAAAAA-TATAAA-AA-AATAAAATTTATGAAAAA
*
66830402 TTATTAAATTTTAATAAAAATATAAAAAATATAAAATTTATTAAAAA
1 TTATTAAATTTTAATAAAAATATAAAAAA-ATAAAATTTATGAAAAA
* * * *
66830449 TTA-GAATTTTTTATAAAAATCTTAAAAAAATAAAA
1 TTATTAAATTTTAATAAAAAT-ATAAAAAAATAAAA
66830484 AATTGTAAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.01
46 32 0.45
47 21 0.30
48 17 0.24
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (46 bp):
TTATTAAATTTTAATAAAAATATAAAAAAATAAAATTTATGAAAAA
Found at i:66830731 original size:10 final size:10
Alignment explanation
Indices: 66830718--66830819 Score: 52
Period size: 10 Copynumber: 10.5 Consensus size: 10
66830708 CTTTATAAAG
66830718 TTTTATAATT
1 TTTTATAATT
66830728 TTTTAT-A-T
1 TTTTATAATT
* *
66830736 TTCTAT-ATA
1 TTTTATAATT
66830745 TTTTATAATT
1 TTTTATAATT
*
66830755 GTTTTACAA-T
1 -TTTTATAATT
**
66830765 TTTTATAAAA
1 TTTTATAATT
**
66830775 TTTTACGA-T
1 TTTTATAATT
*
66830784 TTTTATATTTT
1 TTTTATA-ATT
*
66830795 TTTTCTAATT
1 TTTTATAATT
* *
66830805 TTTAATAAAT
1 TTTTATAATT
66830815 TTTTA
1 TTTTA
66830820 ATGTTTGAAT
Statistics
Matches: 67, Mismatches: 19, Indels: 12
0.68 0.19 0.12
Matches are distributed among these distances:
8 7 0.10
9 18 0.27
10 28 0.42
11 14 0.21
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:66830734 original size:20 final size:20
Alignment explanation
Indices: 66830709--66830779 Score: 53
Period size: 20 Copynumber: 3.7 Consensus size: 20
66830699 TTCTTATGAC
66830709 TTTATAAAGTTTTATAATTT
1 TTTATAAAGTTTTATAATTT
*
66830729 TTTAT--A-TTTCTAT-ATAT
1 TTTATAAAGTTT-TATAATTT
* *
66830746 TTTATAATTGTTTTACAA-TT
1 TTTATAA-AGTTTTATAATTT
*
66830766 TTTATAAAATTTTA
1 TTTATAAAGTTTTA
66830780 CGATTTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 13
0.67 0.10 0.22
Matches are distributed among these distances:
17 11 0.28
18 4 0.10
19 5 0.13
20 15 0.38
21 4 0.10
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
TTTATAAAGTTTTATAATTT
Found at i:66830771 original size:27 final size:27
Alignment explanation
Indices: 66830718--66830771 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
66830708 CTTTATAAAG
*
66830718 TTTTATAATTTTTTATATTTCTATATA
1 TTTTATAATTTTTTAAATTTCTATATA
*
66830745 TTTTATAATTGTTTTACAATTTTTATA
1 TTTTATAATT-TTTTA-AATTTCTATA
66830772 AAATTTTACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
28 5 0.22
29 8 0.35
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTTATAATTTTTTAAATTTCTATATA
Found at i:66830797 original size:19 final size:19
Alignment explanation
Indices: 66830745--66830808 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
66830735 TTTCTATATA
*
66830745 TTTTATAATTGTTTTACAAT
1 TTTTAT-ATTATTTTACAAT
** *
66830765 TTTTATAAAATTTTACGAT
1 TTTTATATTATTTTACAAT
* *
66830784 TTTTATATTTTTTTTCTAAT
1 TTTTATATTATTTTAC-AAT
66830804 TTTTA
1 TTTTA
66830809 ATAAATTTTT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
19 21 0.62
20 13 0.38
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTATATTATTTTACAAT
Found at i:66837948 original size:31 final size:31
Alignment explanation
Indices: 66837875--66837966 Score: 121
Period size: 31 Copynumber: 3.0 Consensus size: 31
66837865 GGGTCTGACA
* *
66837875 CATAACATACATAATATATACACTAAAATAT
1 CATAACATACATAATATACACACTAATATAT
66837906 CATAACATACATAATATACACACTAATATAT
1 CATAACATACATAATATACACACTAATATAT
** * * *
66837937 CATAATGTACATGATATTCATACTAATATA
1 CATAACATACATAATATACACACTAATATA
66837967 CCAACTAATA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 54 1.00
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (31 bp):
CATAACATACATAATATACACACTAATATAT
Found at i:66838106 original size:18 final size:18
Alignment explanation
Indices: 66838078--66838119 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
66838068 CAACAAAAAA
66838078 AATAC-AATACAATATAT
1 AATACAAATACAATATAT
*
66838095 AATACAAATACAATATCT
1 AATACAAATACAATATAT
66838113 AA-ACAAA
1 AATACAAA
66838120 GAAGACACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (18 bp):
AATACAAATACAATATAT
Found at i:66843903 original size:54 final size:54
Alignment explanation
Indices: 66843832--66843961 Score: 206
Period size: 54 Copynumber: 2.4 Consensus size: 54
66843822 AGCCACACAC
* * * *
66843832 CCATGTACCAGGCCGTGTAACTTTCGAAATGGCCTTACATACCAGTGTGTCAAG
1 CCATGTGCTAGGCCGTGTAACTTTCAAAATGGCCTCACATACCAGTGTGTCAAG
* *
66843886 CTATGTGCTAGGCCGTGTAACTTTCAAAATGGCCTCACATACTAGTGTGTCAAG
1 CCATGTGCTAGGCCGTGTAACTTTCAAAATGGCCTCACATACCAGTGTGTCAAG
66843940 CCATGTGCTAGGCCGTGTAACT
1 CCATGTGCTAGGCCGTGTAACT
66843962 ACTTGGCTTG
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (54 bp):
CCATGTGCTAGGCCGTGTAACTTTCAAAATGGCCTCACATACCAGTGTGTCAAG
Found at i:66845563 original size:5 final size:5
Alignment explanation
Indices: 66845545--66845588 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
66845535 CTAATTTAAC
66845545 ATAAA ATCAAA ATAAA ATAAA AT-AA AT-AA ATAAAA ATAAA ATAA
1 ATAAA AT-AAA ATAAA ATAAA ATAAA ATAAA AT-AAA ATAAA ATAA
66845589 GATTTTTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
4 8 0.22
5 19 0.53
6 9 0.25
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:66857724 original size:36 final size:35
Alignment explanation
Indices: 66857643--66857734 Score: 96
Period size: 35 Copynumber: 2.6 Consensus size: 35
66857633 ACTCTCTGTT
*
66857643 TTGGTGTGTTTCAGA-GAGATTAGCTCTTACGAGAA
1 TTGGTGTGTTTCGGATG-GATTAGCTCTTACGAGAA
* ** *
66857678 TTGGTGTGTTTCGGATGGATTTGCTCTTGTGAGCA
1 TTGGTGTGTTTCGGATGGATTAGCTCTTACGAGAA
* *
66857713 TCTGGTGTGTTTTGGTTGGATT
1 T-TGGTGTGTTTCGGATGGATT
66857735 GTCGATGTAC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
35 29 0.60
36 19 0.40
ACGTcount: A:0.15, C:0.10, G:0.33, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTCGGATGGATTAGCTCTTACGAGAA
Found at i:66858195 original size:18 final size:18
Alignment explanation
Indices: 66858158--66858197 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
66858148 TTTATAATAC
* * *
66858158 ATGTGAATTATGTGATAT
1 ATGTGAATTAGGTAAAAT
66858176 ATGTGAATTAGGTAAAAT
1 ATGTGAATTAGGTAAAAT
66858194 ATGT
1 ATGT
66858198 TGATGTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (18 bp):
ATGTGAATTAGGTAAAAT
Found at i:66862908 original size:47 final size:47
Alignment explanation
Indices: 66862855--66863340 Score: 798
Period size: 47 Copynumber: 10.4 Consensus size: 47
66862845 CAGCCAAGAC
66862855 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66862902 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66862949 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66862996 AGTG--T-TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
** *
66863040 AGTGTATATGCGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66863087 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
66863134 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66863181 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66863228 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
66863275 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
66863322 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
66863341 TCCCGAAGGG
Statistics
Matches: 409, Mismatches: 27, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
44 42 0.10
45 1 0.00
46 1 0.00
47 365 0.89
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:66863515 original size:37 final size:37
Alignment explanation
Indices: 66863459--66863537 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66863449 CCGAGCTCTA
* *
66863459 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
66863496 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66863533 AAGAC
1 AAGAC
66863538 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66868563 original size:36 final size:36
Alignment explanation
Indices: 66868516--66868587 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
66868506 CCTGATGTGT
66868516 GCTCAACAAGTAGCTCGTTACTACAACTCTAAGGTC
1 GCTCAACAAGTAGCTCGTTACTACAACTCTAAGGTC
66868552 GCTCAACAAGTAGCTCGTTACTACAACTCTAAGGTC
1 GCTCAACAAGTAGCTCGTTACTACAACTCTAAGGTC
66868588 AATAATAAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (36 bp):
GCTCAACAAGTAGCTCGTTACTACAACTCTAAGGTC
Found at i:66869042 original size:68 final size:68
Alignment explanation
Indices: 66868898--66869057 Score: 194
Period size: 68 Copynumber: 2.4 Consensus size: 68
66868888 AAAAATAGCT
* * * * *
66868898 AGCGGACCTACGCTCCCAGTTGATATTCTAAGAGCTTGCAGATTTAAGCTCATAACTCTAACATA
1 AGCGGACCTACGCTCCTAGATGATATTCTAAGAGCTTGCAGAGTTAAGCTCATAACTCCAACACA
*
66868963 GCT
66 GCC
* * * ** *
66868966 AGCAGACCTACGCTTCTAGATGATATTCTAAGAGCTTGTAGAGTTAAGCTTGTAGCTCCAACACA
1 AGCGGACCTACGCTCCTAGATGATATTCTAAGAGCTTGCAGAGTTAAGCTCATAACTCCAACACA
66869031 GCC
66 GCC
* *
66869034 AGCGGACCTATGCTCCTAGCTGAT
1 AGCGGACCTACGCTCCTAGATGAT
66869058 GTTATAAAGG
Statistics
Matches: 76, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
68 76 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (68 bp):
AGCGGACCTACGCTCCTAGATGATATTCTAAGAGCTTGCAGAGTTAAGCTCATAACTCCAACACA
GCC
Found at i:66869603 original size:17 final size:17
Alignment explanation
Indices: 66869548--66869665 Score: 80
Period size: 17 Copynumber: 6.9 Consensus size: 17
66869538 GAAAGTTTAT
*
66869548 AATTTTCTTAAGTTCAA
1 AATTTACTTAAGTTCAA
* * *
66869565 AGTTCACTTAA-TCCCAA
1 AATTTACTTAAGT-TCAA
66869582 AATTTACTTAAGTTCAA
1 AATTTACTTAAGTTCAA
** *
66869599 AATTTTTTTAAGTTTAA
1 AATTTACTTAAGTTCAA
* *
66869616 AATATGCTTAAGTTCAA
1 AATTTACTTAAGTTCAA
*
66869633 GATTTGA-TTGAA-TTCAA
1 AATTT-ACTT-AAGTTCAA
* *
66869650 AAATTGCTTAAGTTCA
1 AATTTACTTAAGTTCA
66869666 TAGAAAGATA
Statistics
Matches: 75, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
16 3 0.04
17 69 0.92
18 3 0.04
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (17 bp):
AATTTACTTAAGTTCAA
Found at i:66871983 original size:16 final size:16
Alignment explanation
Indices: 66871962--66871994 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
66871952 TGAAGAAGTT
66871962 AGCCTCTACAGAGACC
1 AGCCTCTACAGAGACC
66871978 AGCCTCTACAGAGACC
1 AGCCTCTACAGAGACC
66871994 A
1 A
66871995 TTGAAGTACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.36, G:0.18, T:0.12
Consensus pattern (16 bp):
AGCCTCTACAGAGACC
Found at i:66875923 original size:40 final size:40
Alignment explanation
Indices: 66875841--66876098 Score: 308
Period size: 40 Copynumber: 6.5 Consensus size: 40
66875831 AAGCCAAGTA
* * * *
66875841 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCGCAAATG
* *
66875879 CCTTCGGGACATAGCCCGGATATAGTAACTCGCGCCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCAAATG
* *
66875919 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCGCCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCAAATG
*
66875959 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCAAATG
* * * *
66875999 CCTTCGGGACTTAGCCCAGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCAAATG
* * * *
66876039 CCTTTGGGACTTAGCCCGGA-ACTAGTCATTAGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCGC-AAATG
66876080 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
66876099 TTATCATCCA
Statistics
Matches: 193, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
38 12 0.06
39 16 0.08
40 142 0.74
41 23 0.12
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCAAATG
Found at i:66884052 original size:39 final size:39
Alignment explanation
Indices: 66883991--66884242 Score: 311
Period size: 39 Copynumber: 6.5 Consensus size: 39
66883981 AAGCCAAGTA
* * *
66883991 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAATG
* *
66884029 CCTTCGGGACATAGCCCGGATATAGTAACTCGCGCCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGC-ACAATG
66884069 CCTTCGGGACTTAGCCCGGATATAGTAACTCGC-CAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATG
66884107 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AATG
* *
66884146 CCTT-GGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AATG
* *
66884185 CCTTC-GGACTTAGCCCGGA-ACTAGTCACTAGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAATG
66884225 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
66884243 TTATCATCCA
Statistics
Matches: 192, Mismatches: 11, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
37 27 0.14
38 23 0.12
39 80 0.42
40 46 0.24
41 16 0.08
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATG
Found at i:66890091 original size:6 final size:6
Alignment explanation
Indices: 66890058--66890091 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
66890048 TTGGGAAAAG
*
66890058 AAAAAT AAAA-T AAAATT AAAATT AAAATT AAAAT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAAT
66890092 CCTACAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (6 bp):
AAAATT
Found at i:66893635 original size:13 final size:13
Alignment explanation
Indices: 66893617--66893656 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
66893607 GCTCGACAAG
66893617 GACACGCCCGTGT
1 GACACGCCCGTGT
*
66893630 GACACGTCCGTGT
1 GACACGCCCGTGT
*
66893643 GACACGCTCGTGT
1 GACACGCCCGTGT
66893656 G
1 G
66893657 TGATTTCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.20
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:66917017 original size:43 final size:43
Alignment explanation
Indices: 66916935--66917017 Score: 96
Period size: 43 Copynumber: 1.9 Consensus size: 43
66916925 TGTGATTACA
* *
66916935 TGTAAGACCATGTCTGCGAAATTGGAATTGTATTGTGATTATG
1 TGTAAGACCATGTCTGCGAAATTGGAATCGTATTATGATTATG
* * * *
66916978 TGTAATACCATGTCTGGGACATTGGCATCGT-TATATGATT
1 TGTAAGACCATGTCTGCGAAATTGGAATCGTAT-TATGATT
66917018 TCGTATACAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
42 1 0.03
43 32 0.97
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (43 bp):
TGTAAGACCATGTCTGCGAAATTGGAATCGTATTATGATTATG
Found at i:66928488 original size:40 final size:40
Alignment explanation
Indices: 66928213--66928474 Score: 438
Period size: 40 Copynumber: 6.6 Consensus size: 40
66928203 GATGACAACA
* * * * *
66928213 GGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTA-ATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
*
66928253 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
66928292 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
66928332 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
66928372 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
66928412 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
66928452 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
66928475 AGCAAGTAGC
Statistics
Matches: 213, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
39 33 0.15
40 180 0.85
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:66936884 original size:11 final size:11
Alignment explanation
Indices: 66936865--66936901 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
66936855 AGGATGATAT
66936865 TTTTG-GCATG
1 TTTTGAGCATG
66936875 TTTTGAGCATG
1 TTTTGAGCATG
*
66936886 -TTTGATCATG
1 TTTTGAGCATG
66936896 TTTTGA
1 TTTTGA
66936902 ATAGGTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.51
Consensus pattern (11 bp):
TTTTGAGCATG
Found at i:66938845 original size:50 final size:50
Alignment explanation
Indices: 66938770--66939051 Score: 219
Period size: 50 Copynumber: 5.8 Consensus size: 50
66938760 TGATGCTATA
* *
66938770 GAGATATGAGAGCTAGTGTAAGACCATCTCTGGGACATGGCATCGACCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTC
* *
66938820 GAGATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCTTC-AGCT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTC
* * * * *
66938868 -TGATATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGAC-CTC
* * * * * *
66938915 GATAGATGAGAGCCAATG-AAAACCATGTCTAGAACATGGCATC-AGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGA-CCTC
* * * * *
66938964 AATACAAGAGAG-TCAGTGTAAGACCATGCCT-GGACATGGCATCGA-CT-
1 GAGATATGAGAGCT-AGTGTAAGACCATGTCTAGGACATGGCATCGACCTC
** * * * *
66939011 TTGATGTGTGAGCCAGTGTAAGACCATGTCCAGGACATGGC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGC
66939052 GTTGGCACCT
Statistics
Matches: 180, Mismatches: 39, Indels: 28
0.73 0.16 0.11
Matches are distributed among these distances:
45 28 0.16
46 1 0.01
47 28 0.16
48 17 0.09
49 51 0.28
50 55 0.31
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTC
Found at i:66938975 original size:49 final size:49
Alignment explanation
Indices: 66938881--66939006 Score: 121
Period size: 49 Copynumber: 2.6 Consensus size: 49
66938871 TATGTGTCAG
* * * * *
66938881 TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGAGAGCCAA
1 TGTAAAACCATGTCT-GGACATGGCATCAGCACCAATACAAGAGAGCCAA
* * *
66938931 TG-AAAACCATGTCTAGAACATGGCATCAGC-CTCAATACAAGAGAGTCAG
1 TGTAAAACCATGTCT-GGACATGGCATCAGCAC-CAATACAAGAGAGCCAA
* *
66938980 TGTAAGACCATGCCTGGACATGGCATC
1 TGTAAAACCATGTCTGGACATGGCATC
66939007 GACTTTGATG
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
48 1 0.02
49 49 0.79
50 12 0.19
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (49 bp):
TGTAAAACCATGTCTGGACATGGCATCAGCACCAATACAAGAGAGCCAA
Found at i:66941233 original size:40 final size:40
Alignment explanation
Indices: 66941128--66941387 Score: 280
Period size: 40 Copynumber: 6.6 Consensus size: 40
66941118 TCCTCGTTCA
* * * * *
66941128 AATGCCTTC-GGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
66941166 AATGCCTTCGGGACAT-ACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
66941205 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66941245 AATGCCTTCGGGACTTAACCCGGATTTAAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTT-AATAACTCGCACG
* * *
66941286 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * * *
66941325 AAGGCCTTC-GGATCTTAATCCGGATATATTCATTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCGCACG
* *
66941364 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
66941388 CAGCATCAAT
Statistics
Matches: 193, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
38 26 0.13
39 58 0.30
40 87 0.45
41 22 0.11
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:67088972 original size:17 final size:16
Alignment explanation
Indices: 67088950--67088981 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
67088940 AGTGGTGAAG
67088950 ATGAGGAAGGAAAGGAA
1 ATGAGGAA-GAAAGGAA
67088967 ATGAGGAAGAAAGGA
1 ATGAGGAAGAAAGGA
67088982 GAAATTCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.41, T:0.06
Consensus pattern (16 bp):
ATGAGGAAGAAAGGAA
Found at i:67090396 original size:24 final size:25
Alignment explanation
Indices: 67090368--67090417 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
67090358 GTAATATTAC
* *
67090368 ACATATTTATTTAAT-AATAATAAA
1 ACATATGTAGTTAATGAATAATAAA
*
67090392 ACATATGTAGTTAATGAGTAATAAA
1 ACATATGTAGTTAATGAATAATAAA
67090417 A
1 A
67090418 TAATGTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.36
Consensus pattern (25 bp):
ACATATGTAGTTAATGAATAATAAA
Found at i:67090579 original size:25 final size:25
Alignment explanation
Indices: 67090535--67090582 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
67090525 ATGATAAGTA
67090535 ATATATAAAAATATATATAAAATGT
1 ATATATAAAAATATATATAAAATGT
*
67090560 ATATAT-ATAATATATAATAAAAT
1 ATATATAAAAATATAT-ATAAAAT
67090583 AATATAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
ATATATAAAAATATATATAAAATGT
Found at i:67090595 original size:24 final size:24
Alignment explanation
Indices: 67090534--67090588 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
67090524 TATGATAAGT
*
67090534 AATATATAAAAATATATATAAAATG
1 AATATAT-ATAATATATATAAAATG
*
67090559 TATATATATAATATATAATAAAAT-
1 AATATATATAATATAT-ATAAAATG
67090583 AATATA
1 AATATA
67090589 ATGAATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (24 bp):
AATATATATAATATATATAAAATG
Found at i:67091052 original size:30 final size:30
Alignment explanation
Indices: 67090994--67091053 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
67090984 TTATAATAGC
* * *
67090994 TATTAGGACTAAATTGAAACAAATATAAAA
1 TATTAGGACCAAATTAAAACAAAAATAAAA
* *
67091024 TATTAGGACCGAATTAAAATAAAAATAAAA
1 TATTAGGACCAAATTAAAACAAAAATAAAA
67091054 CAAAATTGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.58, C:0.07, G:0.10, T:0.25
Consensus pattern (30 bp):
TATTAGGACCAAATTAAAACAAAAATAAAA
Found at i:67092777 original size:220 final size:220
Alignment explanation
Indices: 67092334--67092875 Score: 823
Period size: 220 Copynumber: 2.4 Consensus size: 220
67092324 CTTAGGAATA
* * * * * *
67092334 CCAAATTTGTTATCTTTGATTTGCTCTCTTACAATACAGAGACGCCAAATCTGCTATCTTCGATC
1 CCAAATATGTT-TCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAA--T-C-ATCTTAGATC
* * *
67092399 TGCTTCATCGTAAACACGTGAAAGCTAAATCTACTATATCTTCGATTTGCTCCTTGTAATAGCAA
61 TGCTTCAGCGTAAACACGTGAAAGCCAAATCTACTATATCTTCGATCTGCTCCTTGTAATAGCAA
67092464 GGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAAAATCCGAAGGTTAGATCTACTATGTCT
126 GGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAAAATCCGAAGGTTAGATCTACTATGTCT
*
67092529 TCGATTTACTCTCCGTCGAATATGGAGATG
191 TCGATCTACTCTCCGTCGAATATGGAGATG
67092559 CCAAATATGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTT
1 CCAAATATGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTT
* *
67092624 CAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAATAGCAAGGATG
66 CAGCGTAAACACGTGAAAGCCAAATCTACTATATCTTCGATCTGCTCCTTGTAATAGCAAGGATG
*
67092689 CCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTACTATGTCTTCGAT
131 CCAAATCATCTTGGATCTACTTCGATGTGAAAAAATCCGAAGGTTAGATCTACTATGTCTTCGAT
* *
67092754 CTGCTCTCCGTTGAATATGGAGATG
196 CTACTCTCCGTCGAATATGGAGATG
* * ** *
67092779 CCAAATCTATTTCTTCGATTTGTTCTCTGACAATATGGAGATGCCAAATCATCTTGGATCTGCTT
1 CCAAATATGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTT
* * * *
67092844 CAGCGTAAACACCTGAAGGTCAGATCTACTAT
66 CAGCGTAAACACGTGAAAGCCAAATCTACTAT
67092876 GCTTTAGCCT
Statistics
Matches: 292, Mismatches: 25, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
220 247 0.85
221 1 0.00
222 1 0.00
224 33 0.11
225 10 0.03
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
CCAAATATGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTT
CAGCGTAAACACGTGAAAGCCAAATCTACTATATCTTCGATCTGCTCCTTGTAATAGCAAGGATG
CCAAATCATCTTGGATCTACTTCGATGTGAAAAAATCCGAAGGTTAGATCTACTATGTCTTCGAT
CTACTCTCCGTCGAATATGGAGATG
Found at i:67097205 original size:18 final size:17
Alignment explanation
Indices: 67097180--67097214 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
67097170 TAGATCCAGA
*
67097180 GACACTTCACAATCCTG
1 GACACTTCAAAATCCTG
67097197 GACATCTTCAAAATCCTG
1 GACA-CTTCAAAATCCTG
67097215 AGATTCCTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.26
Consensus pattern (17 bp):
GACACTTCAAAATCCTG
Found at i:67104153 original size:21 final size:21
Alignment explanation
Indices: 67104127--67104176 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
67104117 TTTCAAAACT
67104127 TATTTAGAAGGAAATTTTAGG
1 TATTTAGAAGGAAATTTTAGG
* *
67104148 TATTTAGAAGGATATTTTATG
1 TATTTAGAAGGAAATTTTAGG
67104169 TATTTAGA
1 TATTTAGA
67104177 CAAACAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.44
Consensus pattern (21 bp):
TATTTAGAAGGAAATTTTAGG
Found at i:67104898 original size:23 final size:23
Alignment explanation
Indices: 67104872--67104943 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 23
67104862 GTAATATTAC
67104872 ACATATTTATTTAATAATAAAAA
1 ACATATTTATTTAATAATAAAAA
* * *
67104895 ACATATGTAGTTAATAAGTAATAA
1 ACATATTTATTTAATAA-TAAAAA
*
67104919 A-ATAATGTATATTTTATAATAAAAA
1 ACAT-AT-T-TATTTAATAATAAAAA
67104944 TAAAAGTAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
23 17 0.45
24 8 0.21
25 5 0.13
26 8 0.21
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.38
Consensus pattern (23 bp):
ACATATTTATTTAATAATAAAAA
Found at i:67105022 original size:21 final size:20
Alignment explanation
Indices: 67104998--67105060 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 20
67104988 TAATAAAATT
67104998 TATAAACAAAGTATATAATAA
1 TATAAACAAA-TATATAATAA
67105019 TATAAAC-AATATGATAAGTAA
1 TATAAACAAATAT-ATAA-TAA
67105040 TATATAA-AAATATATATATAA
1 TATA-AACAAATATATA-ATAA
67105061 AATGTATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
19 3 0.08
20 6 0.16
21 20 0.54
22 8 0.22
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (20 bp):
TATAAACAAATATATAATAA
Found at i:67105056 original size:14 final size:14
Alignment explanation
Indices: 67105039--67105096 Score: 61
Period size: 13 Copynumber: 4.4 Consensus size: 14
67105029 ATGATAAGTA
67105039 ATATATAAAAATAT
1 ATATATAAAAATAT
*
67105053 ATATAT-AAAATGT
1 ATATATAAAAATAT
*
67105066 ATATA-ATATAATAT
1 ATATATA-AAAATAT
67105080 ATA-ATAAAAATA-
1 ATATATAAAAATAT
67105092 ATATA
1 ATATA
67105097 ATGAATAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
12 3 0.08
13 18 0.50
14 15 0.42
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (14 bp):
ATATATAAAAATAT
Found at i:67105068 original size:25 final size:26
Alignment explanation
Indices: 67105040--67105088 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
67105030 TGATAAGTAA
67105040 TATATAA-A-AATATATATATAAAATG
1 TATATAATATAATATATA-ATAAAATG
67105065 TATATAATATAATATATAATAAAA
1 TATATAATATAATATATAATAAAA
67105089 ATAATATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (26 bp):
TATATAATATAATATATAATAAAATG
Found at i:67105092 original size:16 final size:18
Alignment explanation
Indices: 67105073--67105106 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
67105063 TGTATATAAT
67105073 ATAATAT-AT-AATAAAA
1 ATAATATAATGAATAAAA
67105089 ATAATATAATGAATAAAA
1 ATAATATAATGAATAAAA
67105107 CATATATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 2 0.12
18 7 0.44
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
ATAATATAATGAATAAAA
Found at i:67105092 original size:21 final size:19
Alignment explanation
Indices: 67105009--67105113 Score: 74
Period size: 19 Copynumber: 5.3 Consensus size: 19
67104999 ATAAACAAAG
67105009 TATATAATAAT-ATAAACAA
1 TATATAATAATAATAAA-AA
67105028 TATGATAAGTAATATATAAAAA
1 TAT-ATAA-TAATA-ATAAAAA
** *
67105050 TATATATATAA-AATGTATA
1 TATATA-ATAATAATAAAAA
67105069 TAATATAATATATAATAAAAA
1 T-ATATAATA-ATAATAAAAA
67105090 TA-AT-ATAATGAATAAAACA
1 TATATAATAAT-AATAAAA-A
67105109 TATAT
1 TATAT
67105114 TGAAATAACA
Statistics
Matches: 69, Mismatches: 6, Indels: 21
0.72 0.06 0.22
Matches are distributed among these distances:
17 2 0.03
18 10 0.14
19 16 0.23
20 14 0.20
21 16 0.23
22 6 0.09
23 5 0.07
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (19 bp):
TATATAATAATAATAAAAA
Found at i:67105097 original size:14 final size:13
Alignment explanation
Indices: 67105039--67105098 Score: 61
Period size: 14 Copynumber: 4.5 Consensus size: 13
67105029 ATGATAAGTA
67105039 ATAT-ATAAAAAT
1 ATATAATAAAAAT
*
67105051 ATATATATAAAATGT
1 ATATA-ATAAAA-AT
*
67105066 ATATAAT-ATAAT
1 ATATAATAAAAAT
67105078 ATATAATAAAAAT
1 ATATAATAAAAAT
67105091 AATATAAT
1 -ATATAAT
67105099 GAATAAAACA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 12 0.31
13 6 0.15
14 15 0.38
15 6 0.15
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (13 bp):
ATATAATAAAAAT
Found at i:67105200 original size:21 final size:20
Alignment explanation
Indices: 67105157--67105202 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
67105147 AGAGTATAAA
* * *
67105157 ATATATATATAATAATTTTT
1 ATATATATAAAATAAATTAT
67105177 ATATATACTAAAATAAATTAT
1 ATATATA-TAAAATAAATTAT
67105198 ATATA
1 ATATA
67105203 AGGTAAAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATATATAAAATAAATTAT
Found at i:67105566 original size:30 final size:30
Alignment explanation
Indices: 67105508--67105567 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
67105498 TTATAATAAC
* * *
67105508 TATTAGGACTAAATTGAAACAAATATAAAA
1 TATTAGGACCAAATTAAAACAAAAATAAAA
* *
67105538 TATTAGGACCGAATTAAAATAAAAATAAAA
1 TATTAGGACCAAATTAAAACAAAAATAAAA
67105568 CAAAATTGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.58, C:0.07, G:0.10, T:0.25
Consensus pattern (30 bp):
TATTAGGACCAAATTAAAACAAAAATAAAA
Found at i:67111696 original size:48 final size:47
Alignment explanation
Indices: 67111629--67111801 Score: 197
Period size: 42 Copynumber: 3.9 Consensus size: 47
67111619 GCATCAGTGA
67111629 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
1 GATATGTGA-TCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
*
67111677 GATATGTGATCCGTATAAGACCATAGCTGGGCTATGGCATCGATATGT
1 GATATGTGAT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
*
67111725 GA-A---CAT-GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGT
1 GATATGTGATCGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATGT
* **
67111767 GA-A---GAT-GTGTAAGACCATAGTTGAACTATGGCATC
1 GATATGTGATCGTGTAAGACCATAGCTGGGCTATGGCATC
67111802 AAGAAAAAGA
Statistics
Matches: 116, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
41 1 0.01
42 64 0.55
44 2 0.02
47 2 0.02
48 47 0.41
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (47 bp):
GATATGTGATCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
Found at i:67117631 original size:46 final size:46
Alignment explanation
Indices: 67117567--67117689 Score: 167
Period size: 46 Copynumber: 2.7 Consensus size: 46
67117557 CTGCGAGGTC
* * **
67117567 GATGCATGTCCTAGACATGTCTTATACTAGCTCTTGT-CTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCCCGTGCTCAA-GCT
* **
67117613 GATGCATGTCCCAGACATGTCTTACACTTGCTCCCGTGCTGTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCCCGTGCTCAAGCT
67117659 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
67117690 ACACATATCA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 65 0.96
47 3 0.04
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.32
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCCCGTGCTCAAGCT
Found at i:67118070 original size:30 final size:30
Alignment explanation
Indices: 67118027--67118083 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
67118017 TATAATTGGG
* * *
67118027 CAAAATGATCATTTTGCCCCTAGACTTTCA
1 CAAAATAACCATTTTACCCCTAGACTTTCA
67118057 CAAAATAACCATTTTACCCCTAGACTT
1 CAAAATAACCATTTTACCCCTAGACTT
67118084 GAAAATTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.32
Consensus pattern (30 bp):
CAAAATAACCATTTTACCCCTAGACTTTCA
Found at i:67120322 original size:34 final size:34
Alignment explanation
Indices: 67120267--67120348 Score: 139
Period size: 34 Copynumber: 2.4 Consensus size: 34
67120257 TATTTATAAT
* *
67120267 TTAATCCCAAA-CTAGTTAGGACTAAAAGAACAA
1 TTAATCCAAAAGCTAATTAGGACTAAAAGAACAA
67120300 TTAATCCAAAAGCTAATTAGGACTAAAAGAACAA
1 TTAATCCAAAAGCTAATTAGGACTAAAAGAACAA
67120334 TTAATCCAAAAGCTA
1 TTAATCCAAAAGCTA
67120349 GTGGATTCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
33 10 0.22
34 36 0.78
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (34 bp):
TTAATCCAAAAGCTAATTAGGACTAAAAGAACAA
Found at i:67120344 original size:17 final size:17
Alignment explanation
Indices: 67120290--67120345 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
67120280 AGTTAGGACT
67120290 AAAAGAACAATTAATCC
1 AAAAGAACAATTAATCC
*
67120307 AAAAG--CTAATTAGGA-CT
1 AAAAGAAC-AATTA--ATCC
67120324 AAAAGAACAATTAATCC
1 AAAAGAACAATTAATCC
67120341 AAAAG
1 AAAAG
67120346 CTAGTGGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
15 1 0.03
16 6 0.19
17 17 0.55
18 6 0.19
19 1 0.03
ACGTcount: A:0.57, C:0.14, G:0.11, T:0.18
Consensus pattern (17 bp):
AAAAGAACAATTAATCC
Found at i:67123002 original size:33 final size:33
Alignment explanation
Indices: 67122960--67123026 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
67122950 ACCATTGCTC
67122960 ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
1 ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
67122993 ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
1 ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
67123026 A
1 A
67123027 TACACCGGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
Found at i:67123120 original size:42 final size:42
Alignment explanation
Indices: 67123064--67123161 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
67123054 TAGGCCTGAC
* * * * *
67123064 ATAATACACTAGCATAAAGTTTACTAGGCAATAAAGTCCGAT
1 ATAATACACCAGCATAAAGTCTACTAGGCAACAAAGCCCAAT
*
67123106 ATAATACACCAGCATAAAGTCTGCTAGGCAACAAAGCCCAAT
1 ATAATACACCAGCATAAAGTCTACTAGGCAACAAAGCCCAAT
*
67123148 TTAATACACCAGCA
1 ATAATACACCAGCA
67123162 CAAGACTTGC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.43, C:0.22, G:0.13, T:0.21
Consensus pattern (42 bp):
ATAATACACCAGCATAAAGTCTACTAGGCAACAAAGCCCAAT
Found at i:67123173 original size:42 final size:42
Alignment explanation
Indices: 67123003--67123173 Score: 116
Period size: 42 Copynumber: 4.1 Consensus size: 42
67122993 ACATAAAATT
* * * *
67123003 TGCTAGGC-ATAAAGCCTAGTATAATACACCGGCACAGAAC-C
1 TGCTAGGCAACAAAGCCCAATATAATACACCAGCACA-AACTC
* * ** * * * * *
67123044 TGCTAGGCAA-TAGGCCTGACATAATACACTAGCATAAAGTT
1 TGCTAGGCAACAAAGCCCAATATAATACACCAGCACAAACTC
* * * * * *
67123085 TACTAGGCAATAAAGTCCGATATAATACACCAGCATAAAGTC
1 TGCTAGGCAACAAAGCCCAATATAATACACCAGCACAAACTC
*
67123127 TGCTAGGCAACAAAGCCCAATTTAATACACCAGCACAAGACT-
1 TGCTAGGCAACAAAGCCCAATATAATACACCAGCACAA-ACTC
67123169 TGCTA
1 TGCTA
67123174 CGCTCAAAGC
Statistics
Matches: 101, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
40 2 0.02
41 35 0.35
42 62 0.61
43 2 0.02
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (42 bp):
TGCTAGGCAACAAAGCCCAATATAATACACCAGCACAAACTC
Found at i:67133427 original size:29 final size:30
Alignment explanation
Indices: 67133394--67133451 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
67133384 AGTAGCCGAA
*
67133394 GCTAG-TTAAATCGCACACGTAGTGCCAAG
1 GCTAGTTTAAATCGCACACGTAGTACCAAG
*
67133423 GCTAGTTTAAATCGCACACTTAGTACCAA
1 GCTAGTTTAAATCGCACACGTAGTACCAA
67133452 AACTTCCGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (30 bp):
GCTAGTTTAAATCGCACACGTAGTACCAAG
Found at i:67140673 original size:42 final size:43
Alignment explanation
Indices: 67140604--67140714 Score: 167
Period size: 42 Copynumber: 2.7 Consensus size: 43
67140594 ACAGAACCTG
* *
67140604 CTAGGCAAT-AGGCCTGAC-ATAATACACTGGCATAAAGCCTA
1 CTAGGCAATAAAGCCCGACTATAATACACTGGCATAAAGCCTA
*
67140645 CTAGGCAATAAAGTCCGA-TATAATACACTGGCATAAAGCCTA
1 CTAGGCAATAAAGCCCGACTATAATACACTGGCATAAAGCCTA
67140687 CTAGGCAATAAAGCCCGACT-TAATACAC
1 CTAGGCAATAAAGCCCGACTATAATACAC
67140715 CAGCACAAGG
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
41 9 0.14
42 53 0.84
43 1 0.02
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (43 bp):
CTAGGCAATAAAGCCCGACTATAATACACTGGCATAAAGCCTA
Found at i:67152419 original size:15 final size:16
Alignment explanation
Indices: 67152393--67152422 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67152383 AAAATCAGAT
67152393 AAAAATGCAAAAGAAA
1 AAAAATGCAAAAGAAA
67152409 AAAAATG-AAAAGAA
1 AAAAATGCAAAAGAA
67152423 TGTGTTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.07
Consensus pattern (16 bp):
AAAAATGCAAAAGAAA
Found at i:67154514 original size:6 final size:6
Alignment explanation
Indices: 67154503--67154534 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
67154493 GAGAGGTAAG
67154503 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CT
67154535 ATTTGGTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
CTTTTT
Found at i:67156888 original size:21 final size:22
Alignment explanation
Indices: 67156864--67156907 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
67156854 TTTGACCTCT
67156864 ATTAAAATTATAAAAATT-TAA
1 ATTAAAATTATAAAAATTATAA
* *
67156885 ATTAATATTTTAAAAATTATAA
1 ATTAAAATTATAAAAATTATAA
67156907 A
1 A
67156908 GATATAGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTAAAATTATAAAAATTATAA
Found at i:67158154 original size:18 final size:19
Alignment explanation
Indices: 67158122--67158162 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
67158112 ACCATGTCAA
*
67158122 CAAAAAATTTAAAAAAAAT
1 CAAAAAAATTAAAAAAAAT
67158141 CAAAAAAATT-AAAAAAAT
1 CAAAAAAATTAAAAAAAAT
67158159 CAAA
1 CAAA
67158163 CAATAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (19 bp):
CAAAAAAATTAAAAAAAAT
Found at i:67160566 original size:22 final size:23
Alignment explanation
Indices: 67160541--67160585 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
67160531 TTGGTGTACG
67160541 AATT-TTTTTTTA-TTTTCTAAAA
1 AATTATTTTTTTACTTTT-TAAAA
67160563 AATTATTTTTTTACTTTTTAAAA
1 AATTATTTTTTTACTTTTTAAAA
67160586 TTAAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.19
23 13 0.62
24 4 0.19
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (23 bp):
AATTATTTTTTTACTTTTTAAAA
Found at i:67169097 original size:61 final size:61
Alignment explanation
Indices: 67168952--67169099 Score: 149
Period size: 61 Copynumber: 2.4 Consensus size: 61
67168942 ACGTTCTAGT
* * * **
67168952 CAATCTGTATCTGGTGTCGTGACATCCGACCTTCAGTGTTGTGAGGTTGGAGTCAATAGAG
1 CAATCTGTCTTTGGTGTCGTGACATCCGACCTTCAGTGTTGTAACATTGGAGTCAATAGAG
* * * **
67169013 TAATCTGTCTTTCGTGTTGTGACATTTGACCTTCAGTGTTGTAACATTGGAGTC-ATAAGAG
1 CAATCTGTCTTTGGTGTCGTGACATCCGACCTTCAGTGTTGTAACATTGGAGTCAAT-AGAG
*
67169074 CAATAC-G-CTCTTGGTGTCATGACATC
1 CAAT-CTGTCT-TTGGTGTCGTGACATC
67169100 AGGAGATCAG
Statistics
Matches: 69, Mismatches: 15, Indels: 6
0.77 0.17 0.07
Matches are distributed among these distances:
60 4 0.06
61 64 0.93
62 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.34
Consensus pattern (61 bp):
CAATCTGTCTTTGGTGTCGTGACATCCGACCTTCAGTGTTGTAACATTGGAGTCAATAGAG
Found at i:67170444 original size:17 final size:16
Alignment explanation
Indices: 67170400--67170441 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
67170390 AATAAACATC
67170400 ATAAATTAA-TT-TAA
1 ATAAATTAATTTCTAA
67170414 ATAAATTAATTTCTAA
1 ATAAATTAATTTCTAA
67170430 ATTAAA-TAATTT
1 A-TAAATTAATTT
67170442 TCTCAACCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 9 0.36
15 2 0.08
16 10 0.40
17 4 0.16
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAAATTAATTTCTAA
Found at i:67177455 original size:136 final size:136
Alignment explanation
Indices: 67177208--67177470 Score: 454
Period size: 136 Copynumber: 1.9 Consensus size: 136
67177198 GCCATGTGGA
*
67177208 CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAGCTTGCTAGGACCCTCAGTAATTCAAA
1 CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAACTTGCTAGGACCCTCAGTAATTCAAA
* * *
67177273 GACCAACCAAAATACATCTTCGAAATGACATTAATCGAGCCCAAATCAACCTATTTTGTGCCCAG
66 GACCAACCAAAATACATATTCAAAATGACATTAATCGAGCCCAAATCAACCTATTATGTGCCCAG
67177338 TGTGTC
131 TGTGTC
* *
67177344 CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAACTTGCTTGGACCCTCAGTAATTTAAA
1 CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAACTTGCTAGGACCCTCAGTAATTCAAA
* *
67177409 GACCAACCAAAATACATATTCAAAATGACATTAATCGAGTCGAAATCAACCTATTATGTGCC
66 GACCAACCAAAATACATATTCAAAATGACATTAATCGAGCCCAAATCAACCTATTATGTGCC
67177471 TAACGAATGT
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
136 119 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.25
Consensus pattern (136 bp):
CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAACTTGCTAGGACCCTCAGTAATTCAAA
GACCAACCAAAATACATATTCAAAATGACATTAATCGAGCCCAAATCAACCTATTATGTGCCCAG
TGTGTC
Found at i:67179146 original size:25 final size:24
Alignment explanation
Indices: 67179074--67179152 Score: 86
Period size: 25 Copynumber: 3.0 Consensus size: 24
67179064 TTATTTTTCC
*
67179074 TTATTTTATTTTATTTATATATTT
1 TTATTTTATTTTATTTATTTATTT
67179098 ATTATTCTTAATTGTTATATTATTTATTT
1 -TTATT-TT-ATT-TTAT-TTATTTATTT
*
67179127 TTATTTTATTCTTATTTATTTGTTT
1 TTATTTTATT-TTATTTATTTATTT
67179152 T
1 T
67179153 ATTATGCTTC
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
25 15 0.32
26 9 0.19
27 5 0.11
28 9 0.19
29 9 0.19
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (24 bp):
TTATTTTATTTTATTTATTTATTT
Found at i:67185845 original size:30 final size:30
Alignment explanation
Indices: 67185805--67185886 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
67185795 TTGGGTATTT
* *
67185805 CCACATGGGCTAGGCACACGTCCATGTGAG
1 CCACACGGGCTAGACACACGTCCATGTGAG
*
67185835 CCACACGGGCTAGACACACATCCATGTGAG
1 CCACACGGGCTAGACACACGTCCATGTGAG
67185865 CCACACGGGCTAGACACACGTC
1 CCACACGGGCTAGACACACGTC
67185887 TTGTAATGGC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.27, C:0.34, G:0.26, T:0.13
Consensus pattern (30 bp):
CCACACGGGCTAGACACACGTCCATGTGAG
Found at i:67191156 original size:863 final size:863
Alignment explanation
Indices: 67189484--67191213 Score: 3451
Period size: 863 Copynumber: 2.0 Consensus size: 863
67189474 ATAAGGGAAT
67189484 CCATATATCGAGTTAATGCAATGATAGGGGTGTTAATTAGAAAGAGATTTCAATTAATCAACCTA
1 CCATATATCGAGTTAATGCAATGATAGGGGTGTTAATTAGAAAGAGATTTCAATTAATCAACCTA
67189549 GAATCAGTTGTTCTTACTCTCGAAAGAGATATTAACATAATTTAGGAATTTTTACGGATCAAGTG
66 GAATCAGTTGTTCTTACTCTCGAAAGAGATATTAACATAATTTAGGAATTTTTACGGATCAAGTG
67189614 AATAAATCGTTTAATTCAGATTCATAATAAAAGGTGAAGTCTAGGTGGATTCTTTCCTCGGTATT
131 AATAAATCGTTTAATTCAGATTCATAATAAAAGGTGAAGTCTAGGTGGATTCTTTCCTCGGTATT
67189679 GTCTATCTCATTGGTTAATATTTGATTATTTCCTCGATTCATTCTCTGTTGCATTCATAAATAAA
196 GTCTATCTCATTGGTTAATATTTGATTATTTCCTCGATTCATTCTCTGTTGCATTCATAAATAAA
67189744 TTAGTTTAGTAATTTTAGATTTAAATACAACCAATCCAATTTATCGGCTAAATAATAGGAAGACA
261 TTAGTTTAGTAATTTTAGATTTAAATACAACCAATCCAATTTATCGGCTAAATAATAGGAAGACA
67189809 GTAATTACTAGTACTTTTAGTCTTCATGGATACGATATTCTCTACTCACCATGGTTATACTATTG
326 GTAATTACTAGTACTTTTAGTCTTCATGGATACGATATTCTCTACTCACCATGGTTATACTATTG
67189874 TTCAATAGGTGTGCTTGCCTTTGTCATATTTATACTTAGTTTAGTGACCATCAGGTACCGAAGTA
391 TTCAATAGGTGTGCTTGCCTTTGTCATATTTATACTTAGTTTAGTGACCATCAGGTACCGAAGTA
67189939 CAAACAGGGGCATTGATGTGCAAACAGGGGCACTTCTTCATTTCTGTATACATACTTAAATTCAT
456 CAAACAGGGGCATTGATGTGCAAACAGGGGCACTTCTTCATTTCTGTATACATACTTAAATTCAT
67190004 CTCATTCGCATATAACTCTAATACAAATCCAAGAAAAACATTACTAATAATCTTTCTCAATTTCA
521 CTCATTCGCATATAACTCTAATACAAATCCAAGAAAAACATTACTAATAATCTTTCTCAATTTCA
67190069 TATTTACATAAGTATTTGCAACACTTATCGTTATATAAATAACCGAAGTAATTCGCATATATATA
586 TATTTACATAAGTATTTGCAACACTTATCGTTATATAAATAACCGAAGTAATTCGCATATATATA
67190134 TAAATAAATTAACTAGAGAACAACTATAATAATCACAAGTGAATTACTGTAACACCGCACACCCG
651 TAAATAAATTAACTAGAGAACAACTATAATAATCACAAGTGAATTACTGTAACACCGCACACCCG
67190199 TGCCCTATGCTGGGACGGAATACGAGGCGTTACTAAACTTAAACACATGCATTCAAATGTTTCCG
716 TGCCCTATGCTGGGACGGAATACGAGGCGTTACTAAACTTAAACACATGCATTCAAATGTTTCCG
67190264 AGTCACCAAGACTTGATCAAATCAAAAGACTTTTTTGAACTTTGTTTAAACTCCTTAATGTAGGC
781 AGTCACCAAGACTTGATCAAATCAAAAGACTTTTTTGAACTTTGTTTAAACTCCTTAATGTAGGC
67190329 CTCAAACTTTCATTAGAA
846 CTCAAACTTTCATTAGAA
67190347 CCATATATCGAGTTAATGCAATGATAGGGGTGTTAATTAGAAAGAGATTTCAATTAATCAACCTA
1 CCATATATCGAGTTAATGCAATGATAGGGGTGTTAATTAGAAAGAGATTTCAATTAATCAACCTA
67190412 GAATCAGTTGTTCTTACTCTCGAAAGAGATATTAACATAATTTAGGAATTTTTACGGATCAAGTG
66 GAATCAGTTGTTCTTACTCTCGAAAGAGATATTAACATAATTTAGGAATTTTTACGGATCAAGTG
67190477 AATAAATCGTTTAATTCAGATTCATAATAAAAGGTGAAGTCTAGGTGGATTCTTTCCTCGGTATT
131 AATAAATCGTTTAATTCAGATTCATAATAAAAGGTGAAGTCTAGGTGGATTCTTTCCTCGGTATT
67190542 GTCTATCTCATTGGTTAATATTTGATTATTTCCTCGATTCATTCTCTGTTGCATTCATAAATAAA
196 GTCTATCTCATTGGTTAATATTTGATTATTTCCTCGATTCATTCTCTGTTGCATTCATAAATAAA
67190607 TTAGTTTAGTAATTTTAGATTTAAATACAACCAATCCAATTTATCGGCTAAATAATAGGAAGACA
261 TTAGTTTAGTAATTTTAGATTTAAATACAACCAATCCAATTTATCGGCTAAATAATAGGAAGACA
67190672 GTAATTACTAGTACTTTTAGTCTTCATGGATACGATATTCTCTACTCACCATGGTTATACTATTG
326 GTAATTACTAGTACTTTTAGTCTTCATGGATACGATATTCTCTACTCACCATGGTTATACTATTG
67190737 TTCAATAGGTGTGCTTGCCTTTGTCATATTTATACTTAGTTTAGTGACCATCAGGTACCGAAGTA
391 TTCAATAGGTGTGCTTGCCTTTGTCATATTTATACTTAGTTTAGTGACCATCAGGTACCGAAGTA
67190802 CAAACAGGGGCATTGATGTGCAAACAGGGGCACTTCTTCATTTCTGTATACATACTTAAATTCAT
456 CAAACAGGGGCATTGATGTGCAAACAGGGGCACTTCTTCATTTCTGTATACATACTTAAATTCAT
67190867 CTCATTCGCATATAACTCTAATACAAATCCAAGAAAAACATTACTAATAATCTTTCTCAATTTCA
521 CTCATTCGCATATAACTCTAATACAAATCCAAGAAAAACATTACTAATAATCTTTCTCAATTTCA
67190932 TATTTACATAAGTATTTGCAACACTTATCGTTATATAAATAACCGAAGTAATTCGCATATATATA
586 TATTTACATAAGTATTTGCAACACTTATCGTTATATAAATAACCGAAGTAATTCGCATATATATA
67190997 TAAATAAATTAACTAGAGAACAACTATAATAATCACAAGTGAATTACTGTAACACCGCACACCCG
651 TAAATAAATTAACTAGAGAACAACTATAATAATCACAAGTGAATTACTGTAACACCGCACACCCG
67191062 TGCCCTATGCTGGGACGGAATACGAGGCGTTACTAAACTTAAACACATGCATTCAAATGTTTCCG
716 TGCCCTATGCTGGGACGGAATACGAGGCGTTACTAAACTTAAACACATGCATTCAAATGTTTCCG
*
67191127 AGTCACCAAGACTTGATCAAATTAAAAGACTTTTTTGAACTTTGTTTAAACTCCTTAATGTAGGC
781 AGTCACCAAGACTTGATCAAATCAAAAGACTTTTTTGAACTTTGTTTAAACTCCTTAATGTAGGC
67191192 CTCAAACTTTCATTAGAA
846 CTCAAACTTTCATTAGAA
67191210 CCAT
1 CCAT
67191214 TCCGAGTCAC
Statistics
Matches: 866, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
863 866 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (863 bp):
CCATATATCGAGTTAATGCAATGATAGGGGTGTTAATTAGAAAGAGATTTCAATTAATCAACCTA
GAATCAGTTGTTCTTACTCTCGAAAGAGATATTAACATAATTTAGGAATTTTTACGGATCAAGTG
AATAAATCGTTTAATTCAGATTCATAATAAAAGGTGAAGTCTAGGTGGATTCTTTCCTCGGTATT
GTCTATCTCATTGGTTAATATTTGATTATTTCCTCGATTCATTCTCTGTTGCATTCATAAATAAA
TTAGTTTAGTAATTTTAGATTTAAATACAACCAATCCAATTTATCGGCTAAATAATAGGAAGACA
GTAATTACTAGTACTTTTAGTCTTCATGGATACGATATTCTCTACTCACCATGGTTATACTATTG
TTCAATAGGTGTGCTTGCCTTTGTCATATTTATACTTAGTTTAGTGACCATCAGGTACCGAAGTA
CAAACAGGGGCATTGATGTGCAAACAGGGGCACTTCTTCATTTCTGTATACATACTTAAATTCAT
CTCATTCGCATATAACTCTAATACAAATCCAAGAAAAACATTACTAATAATCTTTCTCAATTTCA
TATTTACATAAGTATTTGCAACACTTATCGTTATATAAATAACCGAAGTAATTCGCATATATATA
TAAATAAATTAACTAGAGAACAACTATAATAATCACAAGTGAATTACTGTAACACCGCACACCCG
TGCCCTATGCTGGGACGGAATACGAGGCGTTACTAAACTTAAACACATGCATTCAAATGTTTCCG
AGTCACCAAGACTTGATCAAATCAAAAGACTTTTTTGAACTTTGTTTAAACTCCTTAATGTAGGC
CTCAAACTTTCATTAGAA
Found at i:67192705 original size:46 final size:46
Alignment explanation
Indices: 67192498--67192812 Score: 203
Period size: 46 Copynumber: 6.7 Consensus size: 46
67192488 ATATAGCGAG
* * **
67192498 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGT
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATC--TCAAT
* ** * * * * *
67192547 GTCGATGTCATGTCCCAGACGGGTCTTACA-TTG-ACACACCACAA-
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
* * * * * * * *
67192591 GCTGACGCCATGTCCCAGACAGGTCTTACACTA-CTTGTATATCGCGAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCAAT
*
67192639 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
* * * * *
67192685 GTCGATGCATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTAGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTC-A-AT
* * * *
67192733 GCCGATGCATGCCCCAAACATGTCTTACACTGGCTCTCATGCT--GT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCAAT
67192778 GGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGC
67192813 ACACATATCA
Statistics
Matches: 206, Mismatches: 48, Indels: 27
0.73 0.17 0.10
Matches are distributed among these distances:
44 25 0.12
45 3 0.01
46 71 0.34
47 35 0.17
48 43 0.21
49 29 0.14
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
Found at i:67192821 original size:94 final size:93
Alignment explanation
Indices: 67192599--67192812 Score: 279
Period size: 94 Copynumber: 2.3 Consensus size: 93
67192589 AAGCTGACGC
* ** * * *
67192599 CATGTCCCAGACAGGTCTTACACTA-CTTGTATATCGCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGAGAGGCCGATGCATGCCCCAAACATGTC
* *
67192663 TTACACTAGCTCTCGTCTCAATGTCGATG
66 TTACACTAGCTCTCATCT-AATGCCGATG
* *
67192692 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTAGAGGCCGATGCATGCCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGAGAGGCCGATGCATGCCCCAAACATGTC
* *
67192757 TTACACTGGCTCTCATGCT-GTGGCCGATG
66 TTACACTAGCTCTCAT-CTAAT-GCCGATG
67192786 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
67192813 ACACATATCA
Statistics
Matches: 105, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
93 24 0.23
94 79 0.75
95 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGAGAGGCCGATGCATGCCCCAAACATGTC
TTACACTAGCTCTCATCTAATGCCGATG
Found at i:67200781 original size:31 final size:31
Alignment explanation
Indices: 67200738--67200883 Score: 258
Period size: 31 Copynumber: 4.7 Consensus size: 31
67200728 TCAATCTCAG
*
67200738 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
67200768 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
67200799 CATATCACTGGGCCGAAGCTTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
67200830 CATATCACTGGGCTGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
67200861 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
67200884 ACTGTAACAA
Statistics
Matches: 110, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.05
31 105 0.95
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATTATT
Found at i:67201146 original size:25 final size:25
Alignment explanation
Indices: 67201090--67201173 Score: 127
Period size: 25 Copynumber: 3.4 Consensus size: 25
67201080 CTGGAGGCCT
*
67201090 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
67201114 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
67201139 AGCCCTTTTGATAAATTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
67201164 AGCCCTTTTG
1 AGCCCTTTTG
67201174 CACTTCCTCC
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
23 7 0.12
24 13 0.23
25 36 0.64
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:67201257 original size:9 final size:9
Alignment explanation
Indices: 67201224--67201271 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
67201214 AATACATCAT
*
67201224 ATGCATAAC
1 ATGCATATC
*
67201233 ATACATATC
1 ATGCATATC
67201242 ATGTGCATATC
1 A--TGCATATC
67201253 ATGCATATC
1 ATGCATATC
*
67201262 ATGTATATC
1 ATGCATATC
67201271 A
1 A
67201272 AAATCCCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 25 0.76
11 8 0.24
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (9 bp):
ATGCATATC
Found at i:67201264 original size:20 final size:20
Alignment explanation
Indices: 67201219--67201265 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
67201209 TTATGAATAC
*
67201219 ATCATATGCATAACATACAT
1 ATCATGTGCATAACATACAT
* *
67201239 ATCATGTGCATATCATGCAT
1 ATCATGTGCATAACATACAT
67201259 ATCATGT
1 ATCATGT
67201266 ATATCAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATAACATACAT
Found at i:67208933 original size:31 final size:31
Alignment explanation
Indices: 67208890--67209006 Score: 200
Period size: 31 Copynumber: 3.8 Consensus size: 31
67208880 TCAATCTCAG
67208890 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
67208920 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
67208951 CATATCACTGAGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
67208982 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
67209007 TGTAACAATA
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 77 0.94
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Done.