Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 215 of 325
Found at i:67209276 original size:9 final size:9
Alignment explanation
Indices: 67209260--67209306 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
67209250 ATACATCATG
67209260 TGCATATCA
1 TGCATATCA
*
67209269 TACATATCA
1 TGCATATCA
67209278 TGTGCATATCA
1 --TGCATATCA
67209289 TGCATATCA
1 TGCATATCA
*
67209298 TGTATATCA
1 TGCATATCA
67209307 AAATCCCATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 25 0.76
11 8 0.24
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (9 bp):
TGCATATCA
Found at i:67209277 original size:20 final size:20
Alignment explanation
Indices: 67209254--67209300 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
67209244 TTATGAATAC
67209254 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67209274 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
67209294 ATCATGT
1 ATCATGT
67209301 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67209285 original size:11 final size:11
Alignment explanation
Indices: 67209254--67209300 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 11
67209244 TTATGAATAC
67209254 ATCATGTGCAT
1 ATCATGTGCAT
*
67209265 ATCA--TACAT
1 ATCATGTGCAT
67209274 ATCATGTGCAT
1 ATCATGTGCAT
67209285 ATCA--TGCAT
1 ATCATGTGCAT
67209294 ATCATGT
1 ATCATGT
67209301 ATATCAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
9 17 0.57
11 13 0.43
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:67211190 original size:40 final size:40
Alignment explanation
Indices: 67211105--67211213 Score: 116
Period size: 40 Copynumber: 2.7 Consensus size: 40
67211095 AGATGCATAA
* *
67211105 TAGGGGCACCAAAGTGCAATCAGTA-GCACGAATGTGAGAT
1 TAGGGGCACCAAAGTGCAAACAG-AGGCACGAATGTGACAT
* *
67211145 TAGGGGCAGCAAAGTGCAAACAGGGGCAC-AA-GTGTACAT
1 TAGGGGCACCAAAGTGCAAACAGAGGCACGAATGTG-ACAT
* *
67211184 TCAGGGGCACCGAAGTGCAAATAGAGGCAC
1 T-AGGGGCACCAAAGTGCAAACAGAGGCAC
67211214 TGATGTGCAA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
38 3 0.05
39 6 0.10
40 49 0.84
ACGTcount: A:0.35, C:0.19, G:0.32, T:0.14
Consensus pattern (40 bp):
TAGGGGCACCAAAGTGCAAACAGAGGCACGAATGTGACAT
Found at i:67213418 original size:35 final size:35
Alignment explanation
Indices: 67213368--67213807 Score: 571
Period size: 35 Copynumber: 12.6 Consensus size: 35
67213358 GTACGTTGTC
*
67213368 AATCCAACC-ATAACACGCCGATGCTCATAAGAGCT
1 AATCCAACCGA-AACACGCCAATGCTCATAAGAGCT
* *
67213403 AATCCAACCGAAACACGCCAGTGCTCATTAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
* * *
67213438 AATCCAACTGTAACATGCCAATGCTCATAAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
* * * *
67213473 AATCTAACCGAAACATGCTAGTGCTCATAAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
* * * * *
67213508 AATCTAACCGTAACATGTCAATACTCATAAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
* * *
67213543 AATCCAACCGAAACACGCTAGTGCTCATAAAAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
* *
67213578 AATCCAACCGTAACACACCAATGCTCATAAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
* * * *
67213613 AATCCAACCGAAACACGCTAGTGTTCATAAGAGTT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
*
67213648 AATCCAACCGAAACATGCCAATGCTCATAAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
*
67213683 AATCCAACCGAAA-AGCACCAATGCTCATAAGAGCT
1 AATCCAACCGAAACA-CGCCAATGCTCATAAGAGCT
* *
67213718 AATCCAACCGAAACACGCTAGTGCTCATAAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
*
67213753 AATCCAACC-ATAACACACCAATGCTCATAAGAGCT
1 AATCCAACCGA-AACACGCCAATGCTCATAAGAGCT
67213788 AATCCAACCGAAACACGCCA
1 AATCCAACCGAAACACGCCA
67213808 GACAATGAGT
Statistics
Matches: 349, Mismatches: 51, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
34 2 0.01
35 344 0.99
36 3 0.01
ACGTcount: A:0.39, C:0.28, G:0.14, T:0.18
Consensus pattern (35 bp):
AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
Found at i:67227660 original size:22 final size:21
Alignment explanation
Indices: 67227635--67227689 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
67227625 TACAGGGCTC
**
67227635 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAA-GG
* *
67227657 ACACGCCTGTGTGACCCTAGG
1 ACACGCCCGTGTGACCCAAGG
67227678 ACACGCCCGTGT
1 ACACGCCCGTGT
67227690 TGTAGGTCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGACCCAAGG
Found at i:67230815 original size:22 final size:21
Alignment explanation
Indices: 67230790--67230830 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
67230780 TCGAATTGGT
*
67230790 CACACGAGCTTGTTGCCCCTCC
1 CACACGAGCGTG-TGCCCCTCC
*
67230812 CACACGGGCGTGTGCCCCT
1 CACACGAGCGTGTGCCCCT
67230831 GTGTCTAGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.12, C:0.44, G:0.24, T:0.20
Consensus pattern (21 bp):
CACACGAGCGTGTGCCCCTCC
Found at i:67233954 original size:55 final size:52
Alignment explanation
Indices: 67233893--67234002 Score: 130
Period size: 52 Copynumber: 2.1 Consensus size: 52
67233883 TACATAGTAC
* *
67233893 CCTGCTAAATAAAACACCGACAACTAATGCCTACTAAATATACACCGGCAGAAAG
1 CCTGCTAAAT-AAACACCG-CAAC-AAAGCCTACTAAATATACACCGACAGAAAG
* * * * *
67233948 CCTGCTAAATATACACCGGAACAAAGCTTGCTAAATATACACCGACATAAAG
1 CCTGCTAAATAAACACCGCAACAAAGCCTACTAAATATACACCGACAGAAAG
67234000 CCT
1 CCT
67234003 ATTACGCCCT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
52 28 0.58
53 3 0.06
54 7 0.15
55 10 0.21
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.18
Consensus pattern (52 bp):
CCTGCTAAATAAACACCGCAACAAAGCCTACTAAATATACACCGACAGAAAG
Found at i:67233955 original size:26 final size:26
Alignment explanation
Indices: 67233893--67234002 Score: 112
Period size: 26 Copynumber: 4.1 Consensus size: 26
67233883 TACATAGTAC
* * *
67233893 CCTGCTAAATAAAACACCGACAACTAATG
1 CCTGCTAAAT-ATACACCGGC-AC-AAAG
* *
67233922 CCTACTAAATATACACCGGCAGAAAG
1 CCTGCTAAATATACACCGGCACAAAG
*
67233948 CCTGCTAAATATACACCGGAACAAAG
1 CCTGCTAAATATACACCGGCACAAAG
* * *
67233974 CTTGCTAAATATACACCGACATAAAG
1 CCTGCTAAATATACACCGGCACAAAG
67234000 CCT
1 CCT
67234003 ATTACGCCCT
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 50 0.74
27 1 0.01
28 8 0.12
29 9 0.13
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.18
Consensus pattern (26 bp):
CCTGCTAAATATACACCGGCACAAAG
Found at i:67238140 original size:21 final size:22
Alignment explanation
Indices: 67238114--67238159 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
67238104 GGACAACCAA
* *
67238114 TATAAAGGTT-TTATATTAATT
1 TATAAAGGTTATTATAGTAAAT
67238135 TATAAAGGTTATTATAGTAAAT
1 TATAAAGGTTATTATAGTAAAT
67238157 TAT
1 TAT
67238160 GAAATATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (22 bp):
TATAAAGGTTATTATAGTAAAT
Found at i:67247111 original size:28 final size:29
Alignment explanation
Indices: 67247061--67247115 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
67247051 ACAGGGGTTT
*
67247061 TCACACGGCCTAGTACACACCCGTGTCCC
1 TCACACGACCTAGTACACACCCGTGTCCC
* *
67247090 TCACACGACCTCG-ACACGCCCGTGTC
1 TCACACGACCTAGTACACACCCGTGTC
67247116 TCAGCCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.20, C:0.45, G:0.18, T:0.16
Consensus pattern (29 bp):
TCACACGACCTAGTACACACCCGTGTCCC
Found at i:67248189 original size:50 final size:48
Alignment explanation
Indices: 67248061--67248241 Score: 204
Period size: 50 Copynumber: 3.7 Consensus size: 48
67248051 GGTATAATGT
* * * * *
67248061 CGATGCCATGTCCCAGACATGGTCTTACATTGACTATCAAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCAATATC-ATGC
* *
67248110 CGACGCCATGTCCCAGACATGGTCTTACACTAACTCTCACATATCTATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCA-ATATC-ATGC
* * *
67248160 CGATGCCATGTCCCAGACATGGTCTTACACTGGCAC-CTCTATA-CGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT--AACTCTCAATATCATGC
*
67248208 CGATGCCATGTCCCAAACATGGTCTTACACTAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAAC
67248242 ACATCTCGTA
Statistics
Matches: 114, Mismatches: 15, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
46 2 0.02
48 32 0.28
49 36 0.32
50 39 0.34
51 3 0.03
52 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCAATATCATGC
Found at i:67248230 original size:48 final size:45
Alignment explanation
Indices: 67248159--67248328 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 45
67248149 CATATCTATA
* *
67248159 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTCTATACGTG
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTGGCACATCT-TACGTG
**
67248207 CCGATGCCATGTCCCAAACATGGTCTTACACTAACACATC-T-CGTAG
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTGGCACATCTTACGT-G
* ** *
67248253 CCGATGCATGTCTCGGACATGTCTTACACTGGCTTACATC-T-CGAGG
1 CCGATGCATGTCCCAAACATGTCTTACACTGGC--ACATCTTACG-TG
*
67248299 ACGATGCATGTCCCAAACATGTCTTACACT
1 CCGATGCATGTCCCAAACATGTCTTACACT
67248329 AGCTCTCATC
Statistics
Matches: 104, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
44 11 0.11
45 14 0.13
46 43 0.41
48 36 0.35
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
CCGATGCATGTCCCAAACATGTCTTACACTGGCACATCTTACGTG
Found at i:67248339 original size:46 final size:46
Alignment explanation
Indices: 67248116--67248340 Score: 149
Period size: 46 Copynumber: 4.8 Consensus size: 46
67248106 AGGCCGACGC
* * * *
67248116 CATGTCCCAGACATGGTCTTACACTAACTCTCACATATC-TATACCGATG
1 CATGTCCCAAACAT-GTCTTACACTAGCTCT--CATCTCGTAGA-CGATG
* * * * *
67248165 CCATGTCCCAGACATGGTCTTACACTGGCACCTCTAT-ACGT-GCCGATG
1 -CATGTCCCAAACAT-GTCTTACACTAGC-TCTC-ATCTCGTAGACGATG
* * *
67248213 CCATGTCCCAAACATGGTCTTACACTA--ACACATCTCGTAGCCGATG
1 -CATGTCCCAAACAT-GTCTTACACTAGCTCTCATCTCGTAGACGATG
* ** *
67248259 CATGTCTCGGACATGTCTTACACTGGCT-TACATCTCG-AGGACGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCT-CATCTCGTA-GACGATG
67248305 CATGTCCCAAACATGTCTTACACTAGCTCTCATCTC
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATCTC
67248341 AATGTCAATG
Statistics
Matches: 143, Mismatches: 22, Indels: 24
0.76 0.12 0.13
Matches are distributed among these distances:
44 12 0.08
45 17 0.12
46 50 0.35
47 1 0.01
48 30 0.21
49 2 0.01
50 29 0.20
51 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTCATCTCGTAGACGATG
Found at i:67248339 original size:92 final size:95
Alignment explanation
Indices: 67248061--67248340 Score: 247
Period size: 98 Copynumber: 2.9 Consensus size: 95
67248051 GGTATAATGT
* * * * * *
67248061 CGATGCCATGTCCCAGACATGGTCTTACA-TTG-ACTATCAAAATCGAGGCCGACGCCATGTCCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCAC-ATCTAGA-CG-TGACGATGCCATGTCCC
* *
67248124 AGACATGGTCTTACACTAACTCTCACATATCTATAC
63 AAACATGGTCTTACACT-ACTCT--CATCTCTATAC
* * *
67248160 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTCTATACGTGCCGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTAGACGTGACGATGCCATGTCCCAAA
* * *
67248225 CATGGTCTTACACTA-ACACATCTCGTA-GC
66 CATGGTCTTACACTACTCTCATCTC-TATAC
* * *
67248254 CGATG-CATGTCTCGGACAT-GTCTTACACTGGCTTACATCTCGA-G-GACGATG-CATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC--ACATCTAGACGTGACGATGCCATGTCCCA
67248314 AACAT-GTCTTACACTAGCTCTCATCTC
64 AACATGGTCTTACACTA-CTCTCATCTC
67248341 AATGTCAATG
Statistics
Matches: 155, Mismatches: 19, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
90 11 0.07
91 14 0.09
92 26 0.17
93 13 0.08
94 17 0.11
95 2 0.01
96 1 0.01
97 1 0.01
98 31 0.20
99 31 0.20
100 6 0.04
101 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTAGACGTGACGATGCCATGTCCCAAA
CATGGTCTTACACTACTCTCATCTCTATAC
Found at i:67255508 original size:42 final size:42
Alignment explanation
Indices: 67255449--67255529 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
67255439 GCTATGGGGG
67255449 ACTAAATTGAGAAGATGGACACTTTTATTTAGTTAATTTTGT
1 ACTAAATTGAGAAGATGGACACTTTTATTTAGTTAATTTTGT
*
67255491 ACTAAATTGAGAAGATGGATACTTTTATTTAGTTAATTT
1 ACTAAATTGAGAAGATGGACACTTTTATTTAGTTAATTT
67255530 AGTTAAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.43
Consensus pattern (42 bp):
ACTAAATTGAGAAGATGGACACTTTTATTTAGTTAATTTTGT
Found at i:67257691 original size:40 final size:40
Alignment explanation
Indices: 67257594--67257780 Score: 250
Period size: 40 Copynumber: 4.6 Consensus size: 40
67257584 CAAATTCTCA
* * * *
67257594 CACATTAAGTGCCAATACATAGCCAAAGCTGT-TTTAATCTTG
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATCTTGAATC--G
* * *
67257636 CACACTAAGTACCATACATAGCCGAAGCTATCTCGAGTCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCG
* *
67257676 CACACTGAGTGCCATACATAGCTGAAGCTATCTTGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCG
*
67257716 CACACTAAGTGCCATACATAGCTGAAGCTATCTTGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCG
67257756 CACACTAAGTGCCATACATAGCCGA
1 CACACTAAGTGCCATACATAGCCGA
67257781 GTTGTTGTCA
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 99 0.76
41 16 0.12
42 15 0.12
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCG
Found at i:67259698 original size:38 final size:38
Alignment explanation
Indices: 67259609--67259787 Score: 216
Period size: 38 Copynumber: 4.7 Consensus size: 38
67259599 AAACCCAAAC
* * * *
67259609 ATAACACCAGCACGAAGCCTACGGGACTTTGAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* * *
67259649 ATAATATCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
67259687 ATAATACCAGCACCAAGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
67259725 ATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
67259763 ATAATTCCAGCA-TATAGCCTGCGGG
1 ATAATACCAGCACGA-AGCCTGCGGG
67259788 TCTTTAAGAC
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
37 1 0.01
38 96 0.79
39 3 0.02
40 21 0.17
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:67264003 original size:57 final size:58
Alignment explanation
Indices: 67263932--67264042 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 58
67263922 GTGCCCACTG
* * *
67263932 ACCGATCTCACACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCACACACATAGTGCTCGATTAAAGGAACTCACACACACAGTGCCTCAATT
* * * *
67263989 ACCGATTTCGCACACATAGTGCTCGATTAAAGGAATTTACACACACAGTGCCTC
1 ACCGATCTCACACACATAGTGCTCGATTAAAGGAACTCACACACACAGTGCCTC
67264043 TAATCATTCG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 27 0.59
58 19 0.41
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.23
Consensus pattern (58 bp):
ACCGATCTCACACACATAGTGCTCGATTAAAGGAACTCACACACACAGTGCCTCAATT
Found at i:67264257 original size:43 final size:43
Alignment explanation
Indices: 67264196--67264460 Score: 379
Period size: 43 Copynumber: 6.2 Consensus size: 43
67264186 CCTTGCTCGA
** *
67264196 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
67264239 ATCACTGGCACGGAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * * * *
67264282 ATCATCGACACGAAGCCTGCTAGGCATGAAGGCTCTAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
67264325 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
67264368 ATCACCGGCACGAAGCCTGCTAGGCA-GAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACG-AAGGCCCGAATACAC
* * *
67264411 ATCACCAGCATGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
67264454 ATCACCG
1 ATCACCG
67264461 AGTTTCATGC
Statistics
Matches: 195, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
43 195 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:67265933 original size:28 final size:27
Alignment explanation
Indices: 67265848--67265937 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
67265838 GTGACAGAGT
*
67265848 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
67265877 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
67265904 CACTAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
67265932 CACCAG
1 CACCAG
67265938 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:67266090 original size:28 final size:28
Alignment explanation
Indices: 67266043--67266107 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
67266033 AAATTAACCC
*
67266043 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
67266071 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
67266099 TAGGGGTAT
1 TAGGGGTAT
67266108 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:67267195 original size:12 final size:13
Alignment explanation
Indices: 67267176--67267208 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
67267166 GGGTTCGGCT
67267176 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
67267189 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
67267201 ATGGAGAA
1 ATGGAGAA
67267209 AAAGAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:67273754 original size:27 final size:29
Alignment explanation
Indices: 67273697--67273758 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 29
67273687 GTGATAGAGT
** *
67273697 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGATACAGATATTACGTGGCAGGGC
67273726 CACCAGA-ACAGATA-TACGTGGCAGGGC
1 CACCAGATACAGATATTACGTGGCAGGGC
67273753 CACCAG
1 CACCAG
67273759 GACGCTTCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 16 0.53
28 7 0.23
29 7 0.23
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.18
Consensus pattern (29 bp):
CACCAGATACAGATATTACGTGGCAGGGC
Found at i:67273911 original size:28 final size:28
Alignment explanation
Indices: 67273868--67273928 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
67273858 TAACCCTAGG
*
67273868 GGTATAAAGGTCATTTTGCACACATAGA
1 GGTATAAAGGTAATTTTGCACACATAGA
* * *
67273896 GGTATAATGGTAATTTTGCATACATAGG
1 GGTATAAAGGTAATTTTGCACACATAGA
67273924 GGTAT
1 GGTAT
67273929 TCTAGTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (28 bp):
GGTATAAAGGTAATTTTGCACACATAGA
Found at i:67275015 original size:12 final size:13
Alignment explanation
Indices: 67274996--67275028 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
67274986 GGGTTCGACT
67274996 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
67275009 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
67275021 ATGGAGAA
1 ATGGAGAA
67275029 AAAGAGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:67276828 original size:38 final size:38
Alignment explanation
Indices: 67276730--67276904 Score: 215
Period size: 38 Copynumber: 4.6 Consensus size: 38
67276720 CGAGGTATAA
* * *
67276730 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCAGATATAATACCAGCACGAAGCCTACGGGA-TTT
* * * * *
67276769 AAACTCAGATATAATATCAGCACTAGGCCTGCGGGATTT
1 -AACCCAGATATAATACCAGCACGAAGCCTACGGGATTT
* *
67276808 AACCCGGATATAATACCAGCACCAAGCCTACGGGATTT
1 AACCCAGATATAATACCAGCACGAAGCCTACGGGATTT
* *
67276846 AACCCGGATATATTACCAGCACGAAGCCTACGGGATTT
1 AACCCAGATATAATACCAGCACGAAGCCTACGGGATTT
*
67276884 AACCCAGATATAATTCCAGCA
1 AACCCAGATATAATACCAGCA
67276905 TATAGCCTGC
Statistics
Matches: 116, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
38 86 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.19
Consensus pattern (38 bp):
AACCCAGATATAATACCAGCACGAAGCCTACGGGATTT
Found at i:67298237 original size:19 final size:18
Alignment explanation
Indices: 67298192--67298243 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
67298182 CCGTTTTCAT
*
67298192 TTACTTAATTAAATATTTT
1 TTACTTAATT-AATATTTA
* *
67298211 TTAGTTAATTAATGTTTAA
1 TTACTTAATTAATATTT-A
67298230 TTACTTAAGTTAAT
1 TTACTTAA-TTAAT
67298244 TGACATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 6 0.22
19 16 0.59
20 5 0.19
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (18 bp):
TTACTTAATTAATATTTA
Found at i:67303872 original size:30 final size:30
Alignment explanation
Indices: 67303836--67303896 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
67303826 AAGAAAGAAT
67303836 TTTTAGAGCTCAAACAGGGAAACATGACTG
1 TTTTAGAGCTCAAACAGGGAAACATGACTG
67303866 TTTTAGAGCTCAAACAGGGAAACATGACTG
1 TTTTAGAGCTCAAACAGGGAAACATGACTG
67303896 T
1 T
67303897 ATCTGAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (30 bp):
TTTTAGAGCTCAAACAGGGAAACATGACTG
Found at i:67315021 original size:37 final size:37
Alignment explanation
Indices: 67314960--67315038 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
67314950 TTATTACGAA
* *
67314960 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
* *
67314997 GTCTTACCCGGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
67315034 GTCTT
1 GTCTT
67315039 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:67315235 original size:47 final size:47
Alignment explanation
Indices: 67315157--67315473 Score: 454
Period size: 47 Copynumber: 6.6 Consensus size: 47
67315147 CCCTTCGGGA
* * * * * *
67315157 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67315204 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67315251 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67315298 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67315349 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67315396 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67315447 CTTATCACATATATACACTTCCACATT
1 CTTATCACATATATACACTTTCACATT
67315474 TATTCAAATA
Statistics
Matches: 245, Mismatches: 17, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
47 154 0.63
51 91 0.37
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67315335 original size:51 final size:51
Alignment explanation
Indices: 67315212--67315461 Score: 417
Period size: 51 Copynumber: 5.1 Consensus size: 51
67315202 GCCCTGTCAC
67315212 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
67315259 ATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
67315310 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
67315357 ATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
67315408 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
67315459 ATA
1 ATA
67315462 CACTTCCACA
Statistics
Matches: 189, Mismatches: 6, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
47 91 0.48
51 98 0.52
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (51 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:67315354 original size:98 final size:98
Alignment explanation
Indices: 67315157--67315473 Score: 509
Period size: 98 Copynumber: 3.3 Consensus size: 98
67315147 CCCTTCGGGA
* * * * * * * *
67315157 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC----ATATAT
1 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
67315218 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
67315251 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
67315316 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
67315349 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
67315414 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
67315447 CTTATCACATATATACACT-TCCACATT
1 CTTATCACATATATACACTCT-CACATT
67315474 TATTCAAATA
Statistics
Matches: 208, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
94 46 0.22
97 1 0.00
98 161 0.77
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (98 bp):
CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67320159 original size:25 final size:25
Alignment explanation
Indices: 67320130--67320179 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
67320120 AAATAAAAAA
* *
67320130 ATTT-AAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAAACAAATAC
67320155 ATTTAAAAACATAAAAAACAAATAC
1 ATTTAAAAACATAAAAAACAAATAC
67320180 TAAAACAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (25 bp):
ATTTAAAAACATAAAAAACAAATAC
Found at i:67322265 original size:16 final size:16
Alignment explanation
Indices: 67322244--67322285 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
67322234 GTTTACCTCA
67322244 TTGGTAAATAGTAGCC
1 TTGGTAAATAGTAGCC
67322260 TTGGTAAATAGTAGCC
1 TTGGTAAATAGTAGCC
*
67322276 TTGATAAATA
1 TTGGTAAATA
67322286 TCAAGGTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (16 bp):
TTGGTAAATAGTAGCC
Found at i:67327730 original size:21 final size:21
Alignment explanation
Indices: 67327706--67327745 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
67327696 TAGTCCTTTG
67327706 TGATGAGAATTTGATCAACTA
1 TGATGAGAATTTGATCAACTA
67327727 TGATGAGAATTTGATCAAC
1 TGATGAGAATTTGATCAAC
67327746 CTAGCATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
TGATGAGAATTTGATCAACTA
Found at i:67328588 original size:12 final size:12
Alignment explanation
Indices: 67328556--67328594 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
67328546 TAAAATTAAA
67328556 AAATTAA-AAC-
1 AAATTAAGAACT
67328566 AAATT-AGAACT
1 AAATTAAGAACT
67328577 AAATTAAGAACT
1 AAATTAAGAACT
67328589 AAATTA
1 AAATTA
67328595 TATTAATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 1 0.04
10 8 0.31
11 5 0.19
12 12 0.46
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.26
Consensus pattern (12 bp):
AAATTAAGAACT
Found at i:67330585 original size:16 final size:16
Alignment explanation
Indices: 67330566--67330596 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67330556 CTTCTTCACT
67330566 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
67330582 TACTTACTTACTTAA
1 TACTCACTTACTTAA
67330597 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:67330602 original size:20 final size:20
Alignment explanation
Indices: 67330563--67330602 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67330553 AAACTTCTTC
* *
67330563 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
67330583 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
67330603 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:67330918 original size:53 final size:56
Alignment explanation
Indices: 67330835--67330979 Score: 183
Period size: 53 Copynumber: 2.7 Consensus size: 56
67330825 ATCCTTTTGA
*
67330835 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGT-AGCC-TTGCCTTAT-G-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTGA-CCTTTGCCTTATAGT
* * * *
67330888 AACTCACCAATGCCATGCCTTGGCAGGGTCTTACAT-GTGACCTTTGCCTTATAGT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTGACCTTTGCCTTATAGT
* *
67330943 AACTTATCAATGTCATGTCTTGACATGGTCTTACATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATG
67330980 ATTTCCTTGC
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
52 4 0.05
53 41 0.54
54 1 0.01
55 30 0.39
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (56 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTGACCTTTGCCTTATAGT
Found at i:67333626 original size:38 final size:38
Alignment explanation
Indices: 67333584--67333657 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
67333574 AACATGAAAG
*
67333584 ACAAAAACACAAAAGATATAATAGTGAAATGTGAAAAT
1 ACAAAAACACAAAAGATATAACAGTGAAATGTGAAAAT
*
67333622 ACAAAAACACAAAAGATATAACAGTGATATGTGAAA
1 ACAAAAACACAAAAGATATAACAGTGAAATGTGAAA
67333658 TTAACTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.59, C:0.09, G:0.14, T:0.18
Consensus pattern (38 bp):
ACAAAAACACAAAAGATATAACAGTGAAATGTGAAAAT
Found at i:67341394 original size:13 final size:13
Alignment explanation
Indices: 67341376--67341402 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67341366 GAAGTAATCG
67341376 CACACAGGCGTGT
1 CACACAGGCGTGT
67341389 CACACAGGCGTGT
1 CACACAGGCGTGT
67341402 C
1 C
67341403 CCTACTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACAGGCGTGT
Found at i:67346301 original size:47 final size:47
Alignment explanation
Indices: 67346247--67346534 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
67346237 TTAGGATTTT
** *
67346247 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
67346294 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
67346341 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67346388 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
67346435 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
67346482 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67346529 ATGTGA
1 ATGTGA
67346535 AATATATATA
Statistics
Matches: 216, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 216 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:67346349 original size:25 final size:25
Alignment explanation
Indices: 67346274--67346349 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
67346264 GTGTATATAT
67346274 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
67346299 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
67346321 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
67346346 GTGA
1 GTGA
67346350 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:67346469 original size:141 final size:141
Alignment explanation
Indices: 67346246--67346534 Score: 506
Period size: 141 Copynumber: 2.0 Consensus size: 141
67346236 TTTAGGATTT
** *
67346246 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
* *
67346311 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
67346376 GCCGAATGGCC
131 GCCGAATGGCC
67346387 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
67346452 ATGCATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
*
67346517 GCCGAATGGTC
131 GCCGAATGGCC
*
67346528 AATGTGA
1 TATGTGA
67346535 AATATATATA
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 140 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GCCGAATGGCC
Found at i:67346585 original size:94 final size:93
Alignment explanation
Indices: 67346269--67346576 Score: 377
Period size: 94 Copynumber: 3.2 Consensus size: 93
67346259 TGAATGTGTA
* * *
67346269 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCCGA
*
67346334 ATGGCCAATGTGGTGAATATGA-ACATG
66 ATGGCCAATGTGATGAATATGAGACATG
* *
67346361 CATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCC
*
67346426 GAATGGCCAATGTGATGAATGTGAG-CATG
64 GAATGGCCAATGTGATGAATATGAGACATG
* * * * *
67346455 CATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCC
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCC
* * *
67346520 GAATGGTCAATGTGAAATATATATATGAGATATG
64 GAATGGCCAATGTG--AT-GA-ATATGAGACATG
* *
67346554 TATATGTGGTAAAGCCGAATGGC
1 TATATGTGATAAGGCCGAATGGC
67346577 TAGTGTGAAA
Statistics
Matches: 188, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
94 157 0.84
96 2 0.01
97 20 0.11
98 6 0.03
99 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (93 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATATGAGACATG
Found at i:67346958 original size:37 final size:37
Alignment explanation
Indices: 67346739--67346940 Score: 341
Period size: 37 Copynumber: 5.5 Consensus size: 37
67346729 GGAAATATAT
* *
67346739 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
67346776 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
*
67346813 CCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
* *
67346850 CCCGGGTAAGACCTGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
* *
67346887 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
67346924 TCCGGGTAAGACCCGAT
1 TCCGGGTAAGACCCGAT
67346941 AACTTCATGT
Statistics
Matches: 157, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 157 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.22
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
Found at i:67348678 original size:77 final size:81
Alignment explanation
Indices: 67348549--67348731 Score: 243
Period size: 77 Copynumber: 2.3 Consensus size: 81
67348539 GCTACTCGTT
* *
67348549 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
67348613 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
**
67348629 CAAATGCCTTCGGG-CTTA-CCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
67348691 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
67348707 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67348732 CATCATTCAA
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
76 3 0.03
77 47 0.52
78 18 0.20
79 9 0.10
80 14 0.15
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:67348731 original size:40 final size:40
Alignment explanation
Indices: 67348530--67348731 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
67348520 CGGAATTTAA
** *
67348530 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67348570 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
67348610 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTA-C
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
67348648 CCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
67348687 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
67348727 CCGGA
1 CCGGA
67348732 CATCATTCAA
Statistics
Matches: 143, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
36 2 0.01
37 23 0.16
38 11 0.08
39 11 0.08
40 85 0.59
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67356535 original size:40 final size:40
Alignment explanation
Indices: 67356498--67356683 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
67356488 GCTACTCGTT
* *
67356498 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
67356538 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
67356578 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
67356618 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
67356659 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
67356684 CATCATTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:67363550 original size:28 final size:28
Alignment explanation
Indices: 67363509--67363571 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
67363499 TTGGACACCG
67363509 CCTTCACATCAATCATCAGAACTAATAAT
1 CCTT-ACATCAATCATCAGAACTAATAAT
67363538 CCTTACATCAATCATCAGAACTAATAAT
1 CCTTACATCAATCATCAGAACTAATAAT
67363566 CCTTAC
1 CCTTAC
67363572 TCTGAACTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 30 0.88
29 4 0.12
ACGTcount: A:0.40, C:0.29, G:0.03, T:0.29
Consensus pattern (28 bp):
CCTTACATCAATCATCAGAACTAATAAT
Found at i:67363920 original size:20 final size:20
Alignment explanation
Indices: 67363895--67363939 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
67363885 TTGCTTAAAG
67363895 TTTTATTCATA-AGATTATTA
1 TTTTATTCATAGA-ATTATTA
*
67363915 TTTTATTTATAGAATTATTA
1 TTTTATTCATAGAATTATTA
67363935 TTTTA
1 TTTTA
67363940 ATAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (20 bp):
TTTTATTCATAGAATTATTA
Found at i:67363950 original size:20 final size:19
Alignment explanation
Indices: 67363903--67363950 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
67363893 AGTTTTATTC
**
67363903 ATAAGATTATTATTTTATTT
1 ATAA-ATTATTATTTTATAA
67363923 ATAGAATTATTATTTTAATAA
1 ATA-AATTATTATTTT-ATAA
67363944 ATAAATT
1 ATAAATT
67363951 TCATATTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (19 bp):
ATAAATTATTATTTTATAA
Found at i:67364809 original size:19 final size:20
Alignment explanation
Indices: 67364761--67364810 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
67364751 TTAATTCAAG
67364761 TTTAT-TTTAAATTATTTATA
1 TTTATATTT-AATTATTTATA
*
67364781 TTTATA-TTAATTTTTTAT-
1 TTTATATTTAATTATTTATA
67364799 TTTATATTTAAT
1 TTTATATTTAAT
67364811 AATATTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 6 0.22
19 14 0.52
20 7 0.26
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTATATTTAATTATTTATA
Found at i:67364818 original size:22 final size:25
Alignment explanation
Indices: 67364775--67364823 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
67364765 TTTTAAATTA
*
67364775 TTTATATTTATATTAAT-TTTTTAT
1 TTTATATTTATATTAATATTTTCAT
67364799 TTTATATTTA-A-TAATATTTTCAT
1 TTTATATTTATATTAATATTTTCAT
67364822 TT
1 TT
67364824 ATTAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 9 0.39
24 10 0.43
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTATATTTATATTAATATTTTCAT
Found at i:67366002 original size:10 final size:11
Alignment explanation
Indices: 67365959--67365999 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
67365949 GTTTTAAAAC
67365959 TAAAAATTAAA
1 TAAAAATTAAA
67365970 TAAAATTATTATAA
1 TAAAA--ATTA-AA
67365984 TAAAAATTAAA
1 TAAAAATTAAA
67365995 TAAAA
1 TAAAA
67366000 TTATCTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 12 0.44
12 4 0.15
13 4 0.15
14 7 0.26
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTAAA
Found at i:67367439 original size:28 final size:28
Alignment explanation
Indices: 67367399--67367454 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
67367389 GCCTTGATGG
67367399 TAAGAAGAGGCCAAGGACACCTAAAAGT
1 TAAGAAGAGGCCAAGGACACCTAAAAGT
67367427 TAAGAAGAGGCCAAGGACACCTAAAAGT
1 TAAGAAGAGGCCAAGGACACCTAAAAGT
67367455 ACCACCATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.18, G:0.25, T:0.11
Consensus pattern (28 bp):
TAAGAAGAGGCCAAGGACACCTAAAAGT
Found at i:67368281 original size:34 final size:34
Alignment explanation
Indices: 67368238--67368306 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
67368228 GAGGAAGAGC
67368238 AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
1 AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
67368272 AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
1 AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
67368306 A
1 A
67368307 CGATGGCAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.12, G:0.38, T:0.23
Consensus pattern (34 bp):
AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
Found at i:67368687 original size:18 final size:19
Alignment explanation
Indices: 67368661--67368701 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
67368651 AATCACTTGC
67368661 AACACGC-A-AGCAAAGAGA
1 AACACGCAACAGCAAAGA-A
*
67368679 AACATGCAACAGCAAAGAA
1 AACACGCAACAGCAAAGAA
67368698 AACA
1 AACA
67368702 AATAACAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 6 0.30
19 6 0.30
20 8 0.40
ACGTcount: A:0.59, C:0.22, G:0.17, T:0.02
Consensus pattern (19 bp):
AACACGCAACAGCAAAGAA
Found at i:67369881 original size:4 final size:4
Alignment explanation
Indices: 67369874--67369900 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
67369864 ATGATATATA
67369874 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
67369901 AAAAATGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:67370073 original size:29 final size:29
Alignment explanation
Indices: 67370004--67370074 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
67369994 AGAGCCAAAT
*
67370004 TATACAT-AAATAAACTTAAAAGAGAATA
1 TATACATAAAATAAACTTAAAAGAGAACA
* *
67370032 TATACATATAATAAATTTAAAAGAGAACA
1 TATACATAAAATAAACTTAAAAGAGAACA
*
67370061 TTTACATAAAATAA
1 TATACATAAAATAA
67370075 TATGAAAACA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 7 0.19
29 30 0.81
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.28
Consensus pattern (29 bp):
TATACATAAAATAAACTTAAAAGAGAACA
Found at i:67370082 original size:29 final size:29
Alignment explanation
Indices: 67370004--67370082 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 29
67369994 AGAGCCAAAT
*
67370004 TATACAT-AAATAAACTT-AAAAGAGAATA
1 TATACATAAAATAAA-TTGAAAAGAGAACA
* *
67370032 TATACATATAATAAATTTAAAAGAGAACA
1 TATACATAAAATAAATTGAAAAGAGAACA
*
67370061 TTTACATAAAAT-AATATGAAAA
1 TATACATAAAATAAAT-TGAAAA
67370083 CAATAATGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
28 12 0.28
29 31 0.72
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (29 bp):
TATACATAAAATAAATTGAAAAGAGAACA
Found at i:67371803 original size:45 final size:45
Alignment explanation
Indices: 67371716--67371803 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
67371706 GATGGCTAAA
* * *
67371716 ATCTACTTCATAGCCGATACATGGAGATAATACTCGCCATTTTTG
1 ATCTACTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTTG
67371761 ATCTACTCCATAGCCGATACATGGAGATAAGA-TCTGCAATTTT
1 ATCTACTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTT
67371804 CAGTCTGCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 2 0.05
45 37 0.95
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTACTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTTG
Found at i:67371951 original size:177 final size:175
Alignment explanation
Indices: 67371466--67372336 Score: 1190
Period size: 177 Copynumber: 4.9 Consensus size: 175
67371456 GTCTTATAGT
* * * * * * * *
67371466 AACTTTAGGAAGATAAGATTTGTGA-CTTCAACCTGCTCCACTACAACTTTAGGGAGACAAAG-T
1 AACTTCAGGAAGATAAGACTTGT-ATATTCAACCTGCTCC-CTGCAACTTCAGAGAGATAAGGCT
* * *
67371529 CGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTCGATCTGCTCC
64 -GGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTG-TCC
* *
67371594 ATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTAC
127 ATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGC
* * *
67371643 AACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCTCTGTAACTTCAGAGAGATAAGGCTGA
1 AACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCCCTGCAACTTCAGAGAGATAAGGCTGG
* * * *
67371708 TGGCTAAAATCTACTTCATAGCCGATACATGGAGATAATACTCGCCATTTTTGATCTACTCCATA
66 TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCT-GTCCATA
*
67371773 GCCGATACATGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTGC
130 GCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGC
* * * * * * *
67371819 AATTTCAAGAAGATAAGACTTGCATATTGAGCCTGCTCCACTGCAACTTTAGAGGGATAAGGCTG
1 AACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCC-CTGCAACTTCAGAGAGATAAGGCTG
67371884 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGTTCCAT
65 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTG-TCCAT
* *
67371949 AGCCGATACATGGAGATAAGATATGTAATTTTCAGTCTGCTTCTTGC
129 AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGC
* * *
67371996 AACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGTTAAC-TCAGAGAGATAAGGCT
1 AACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTC-CCTG-CAACTTCAGAGAGATAAGGCT
* * *
67372060 GATGGTTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCCTCA
64 GGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGTC-CA
* * * *
67372125 TAACCGATACATGGAGATAAGATCTGTAATTTTTAGTCTACTTCTTGC
128 TAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGC
* * * * *
67372173 AACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTG
1 AACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTC-CCTGCAACTTCAGAGAGATAAGGCTG
* *
67372238 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTTTGATCTGCCCTAT
65 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGTCC-AT
67372303 AGCCGATACATGGAGATAAGATCTGTAATTTTCA
129 AGCCGATACATGGAGATAAGATCTGTAATTTTCA
67372337 CCGATGTCGC
Statistics
Matches: 621, Mismatches: 63, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
176 155 0.25
177 462 0.74
178 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (175 bp):
AACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCCCTGCAACTTCAGAGAGATAAGGCTGG
TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGTCCATAG
CCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGC
Found at i:67383772 original size:128 final size:127
Alignment explanation
Indices: 67383620--67383870 Score: 412
Period size: 128 Copynumber: 2.0 Consensus size: 127
67383610 AGTGTGTGAA
* * *
67383620 CAACTCGAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCATATTA
1 CAACTCCAATTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACATTA
* *
67383685 GGACGCGATATTTTAAGCCTCCAAAAAACTGAGATCACCTCATGATTTCCAAAACACGCGAAG
66 GGACACGATATTTTAAGCCTCC-AAAAACTGAGATCACATCATGATTTCCAAAACACGCGAAG
* *
67383748 CAACTCCAATTGGATTTTGAGATTCACTCGTTCCAAAGGAATAAAATATCACATCCAGCACATTA
1 CAACTCCAATTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACATTA
* *
67383813 GGACACGGTATTTTAAGCCTCCAAAAACTGAGATCACATCATGATTTCCAAAATACGC
66 GGACACGATATTTTAAGCCTCCAAAAACTGAGATCACATCATGATTTCCAAAACACGC
67383871 AACGAAAATT
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
127 34 0.30
128 80 0.70
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.25
Consensus pattern (127 bp):
CAACTCCAATTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACATTA
GGACACGATATTTTAAGCCTCCAAAAACTGAGATCACATCATGATTTCCAAAACACGCGAAG
Found at i:67386980 original size:47 final size:47
Alignment explanation
Indices: 67386921--67387417 Score: 724
Period size: 47 Copynumber: 10.4 Consensus size: 47
67386911 CAGCCAAGAG
67386921 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67386968 AGTGTATGTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67387015 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67387064 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67387113 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
67387164 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67387211 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67387258 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67387305 AGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * * *
67387352 AGAGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67387399 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
67387418 TCCCGAAAGG
Statistics
Matches: 412, Mismatches: 30, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
47 279 0.68
49 86 0.21
51 45 0.11
53 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:67387592 original size:37 final size:37
Alignment explanation
Indices: 67387536--67387614 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67387526 CCGAGCTCTA
* * *
67387536 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67387573 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67387610 AAGAC
1 AAGAC
67387615 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67389556 original size:43 final size:43
Alignment explanation
Indices: 67389458--67389601 Score: 265
Period size: 43 Copynumber: 3.4 Consensus size: 43
67389448 GTGGTTTTCA
67389458 GCACTAAGTGTGCGGGCAATAAGTGTTCACGG-TGTGA-ATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
67389499 GCACTAAGTGTGCGGGCAATAAGTGTTCGCGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
67389542 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
67389585 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
67389602 TTGAAATGCA
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
41 31 0.31
42 5 0.05
43 63 0.64
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:67389618 original size:29 final size:29
Alignment explanation
Indices: 67389583--67389656 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
67389573 GTTGTGAGAT
* *
67389583 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
67389612 TGGCACTAAGTGTGCAAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67389641 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67389657 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67390139 original size:39 final size:40
Alignment explanation
Indices: 67389965--67390231 Score: 189
Period size: 39 Copynumber: 6.9 Consensus size: 40
67389955 TTGAATGATG
** *
67389965 TCCGGGCTAAGT-CCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* * ** * * *
67390004 TCCGGACTAAG-ACCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
67390043 TCCAGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
67390083 T----TCTAAGTCCCG-AGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
67390118 TCCGGGCTAAGTTCC-AAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
67390157 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
67390197 TCCGGGCTAGGT-CCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
67390232 CGTGTATTCG
Statistics
Matches: 184, Mismatches: 34, Indels: 20
0.77 0.14 0.08
Matches are distributed among these distances:
35 24 0.13
36 10 0.05
39 94 0.51
40 44 0.24
41 12 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:67390216 original size:79 final size:74
Alignment explanation
Indices: 67390042--67390231 Score: 184
Period size: 79 Copynumber: 2.5 Consensus size: 74
67390032 GAGTTACTAA
* * * **
67390042 ATCCAGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATTCTAAGTCCCGAGAGCATTCATG
1 ATCCGGGCTAGGT-CCGAAGAGCATTCATGCTAGTGATATATTCTAAACCCCGAGAGCATTCATG
*
67390107 CTAGTGATGT
65 CTAGTGATAT
* *
67390117 ATCCGGGCTAAGTTCC-AAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCAT
1 ATCCGGGCT-AGGTCCGAAGAGCATTCATGCTAGTGATATAT---T-CTAAACCCCG-AGAGCAT
* * *
67390181 TCGTGCTGGTGTTAT
60 TCATGCTAGTGATAT
* * *
67390196 GTCCGGGCTAGGTCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAGGTCCGAAGAGCATTCATGCTAGTGA
67390232 CGTGTATTCG
Statistics
Matches: 92, Mismatches: 16, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
74 23 0.25
75 10 0.11
76 2 0.02
77 1 0.01
78 13 0.14
79 43 0.47
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (74 bp):
ATCCGGGCTAGGTCCGAAGAGCATTCATGCTAGTGATATATTCTAAACCCCGAGAGCATTCATGC
TAGTGATAT
Found at i:67393797 original size:47 final size:47
Alignment explanation
Indices: 67393738--67394232 Score: 742
Period size: 47 Copynumber: 10.4 Consensus size: 47
67393728 CAGCCAAGAG
67393738 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67393785 AGTGTATGTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67393832 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67393881 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67393932 AGT-TATGTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
67393980 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67394027 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67394074 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67394121 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
67394168 AGTGTATATATGTGA-CAGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67394214 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
67394233 TCCCGAAAGG
Statistics
Matches: 416, Mismatches: 22, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
46 39 0.09
47 244 0.59
48 43 0.10
49 43 0.10
51 43 0.10
53 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:67394407 original size:37 final size:37
Alignment explanation
Indices: 67394351--67394429 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67394341 CCGAGCTCTA
* * *
67394351 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67394388 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67394425 AAGAC
1 AAGAC
67394430 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67459279 original size:44 final size:44
Alignment explanation
Indices: 67459192--67459334 Score: 265
Period size: 43 Copynumber: 3.3 Consensus size: 44
67459182 AGGTCTCTCT
67459192 CGCAC-CTTAGTGCCAATCTCACAA-CTGTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCTGTGAACACTTATTGCC
67459234 CGCACACTTAGTGCCAATCTCACAACCTGTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCTGTGAACACTTATTGCC
67459278 CGCACACTTAGTGCCAATCTCACAACC-GTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCTGTGAACACTTATTGCC
67459321 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67459335 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
42 5 0.05
43 49 0.49
44 45 0.45
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (44 bp):
CGCACACTTAGTGCCAATCTCACAACCTGTGAACACTTATTGCC
Found at i:67461231 original size:37 final size:37
Alignment explanation
Indices: 67461181--67461259 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
67461171 TTATTACGAA
* *
67461181 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
67461218 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
67461255 GTCTT
1 GTCTT
67461260 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:67461523 original size:47 final size:47
Alignment explanation
Indices: 67461378--67461756 Score: 625
Period size: 47 Copynumber: 8.1 Consensus size: 47
67461368 CCCTTCGGGA
* * * * * * *
67461378 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67461425 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67461471 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67461518 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67461565 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67461612 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67461659 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67461706 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67461753 CTTA
1 CTTA
67461757 CTATCATTTC
Statistics
Matches: 316, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 40 0.13
47 276 0.87
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67465402 original size:40 final size:40
Alignment explanation
Indices: 67465345--67465527 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
67465335 CCAGCATGAT
* *
67465345 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
67465385 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
67465425 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
67465466 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
67465506 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
67465528 CATCATTCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 96 0.81
41 20 0.17
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:67465872 original size:27 final size:24
Alignment explanation
Indices: 67465836--67465904 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 24
67465826 AATAATCAAC
67465836 CACGCACACTTAGTGCCATGCATTTCAA
1 CACGCACACTTAGTGCCAT-CA---CAA
*
67465864 C-CGCACACTTAGTGCCATCACAC
1 CACGCACACTTAGTGCCATCACAA
67465887 CACGCACACTTAGTGCCA
1 CACGCACACTTAGTGCCA
67465905 ATCTCACAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
23 3 0.08
24 16 0.41
26 2 0.05
27 17 0.44
28 1 0.03
ACGTcount: A:0.28, C:0.38, G:0.14, T:0.20
Consensus pattern (24 bp):
CACGCACACTTAGTGCCATCACAA
Found at i:67465897 original size:24 final size:24
Alignment explanation
Indices: 67465830--67465904 Score: 91
Period size: 24 Copynumber: 3.0 Consensus size: 24
67465820 GTGCTTAATA
67465830 ATCA-ACCACGCACACTTAGTGCC
1 ATCACACCACGCACACTTAGTGCC
*
67465853 ATGCATTTCAAC-CGCACACTTAGTGCC
1 AT-CA---CACCACGCACACTTAGTGCC
67465880 ATCACACCACGCACACTTAGTGCC
1 ATCACACCACGCACACTTAGTGCC
67465904 A
1 A
67465905 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
23 5 0.11
24 18 0.41
26 2 0.05
27 17 0.39
28 2 0.05
ACGTcount: A:0.29, C:0.37, G:0.13, T:0.20
Consensus pattern (24 bp):
ATCACACCACGCACACTTAGTGCC
Found at i:67465922 original size:27 final size:24
Alignment explanation
Indices: 67465841--67465930 Score: 63
Period size: 27 Copynumber: 3.5 Consensus size: 24
67465831 TCAACCACGC
** *
67465841 ACACTTAGTGCCATGCATTTCAACCGC
1 ACACTTAGTGCCAT-CA-CACAA-CGA
* *
67465868 ACACTTAGTGCCATCACACCACGC
1 ACACTTAGTGCCATCACACAACGA
*
67465892 ACACTTAGTGCCAATCTCACAACGTGA
1 ACACTTAGTGCC-ATCACACAAC--GA
*
67465919 ACACTTATTGCC
1 ACACTTAGTGCC
67465931 CGCACACTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
24 15 0.28
25 10 0.19
26 2 0.04
27 26 0.49
ACGTcount: A:0.29, C:0.34, G:0.13, T:0.23
Consensus pattern (24 bp):
ACACTTAGTGCCATCACACAACGA
Found at i:67465975 original size:43 final size:43
Alignment explanation
Indices: 67465889--67466030 Score: 277
Period size: 43 Copynumber: 3.3 Consensus size: 43
67465879 CATCACACCA
67465889 CGCACACTTAGTGCCAATCTCACAA-CGTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
67465931 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
67465974 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
67466017 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67466031 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
42 25 0.25
43 74 0.75
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (43 bp):
CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
Found at i:67467918 original size:37 final size:37
Alignment explanation
Indices: 67467868--67467946 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
67467858 TTATTACGAA
* *
67467868 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
67467905 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
67467942 GTCTT
1 GTCTT
67467947 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:67468143 original size:47 final size:47
Alignment explanation
Indices: 67468065--67468444 Score: 607
Period size: 47 Copynumber: 8.1 Consensus size: 47
67468055 CCCTTCGGGA
* * * * * * * *
67468065 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
67468112 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
67468159 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
67468206 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
67468253 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
67468300 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
67468347 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
67468394 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
67468441 CTTA
1 CTTA
67468445 CTATCATTTC
Statistics
Matches: 317, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 317 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:67476507 original size:76 final size:75
Alignment explanation
Indices: 67476380--67476604 Score: 279
Period size: 76 Copynumber: 3.0 Consensus size: 75
67476370 CGATTTATTT
* * *
67476380 AACTAGTGTTGGGTGCAACTCATTGTTGGTAAATTCAACTAGTGCTAGGCACACATTTGATATCG
1 AACTAGTG-TGGGCGCAACTCATTGTCGGTAAATTCAACTAGTGCTGGGCACACATTTGATATCG
*
67476445 TCGGTTTACCC
65 TCAGTTTACCC
* *
67476456 AACTAGTGTGGGGCGCAACTCATTATCGGTACATTCAACTAGTGCTGGGCACACATTTGATATCG
1 AACTAGTGT-GGGCGCAACTCATTGTCGGTAAATTCAACTAGTGCTGGGCACACATTTGATATCG
* **
67476521 TTAGTTTACTT
65 TCAGTTTACCC
* * ** * * *
67476532 GACTAGTGCTAGGCGCAACTCATTGTCGGTTTATTCAACTAGTGCTGAGCACACTTTTGATATCA
1 AACTAGTG-TGGGCGCAACTCATTGTCGGTAAATTCAACTAGTGCTGGGCACACATTTGATATCG
67476597 TCAGTTTA
65 TCAGTTTA
67476605 TCCGATTAGC
Statistics
Matches: 129, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
75 1 0.01
76 127 0.98
77 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (75 bp):
AACTAGTGTGGGCGCAACTCATTGTCGGTAAATTCAACTAGTGCTGGGCACACATTTGATATCGT
CAGTTTACCC
Found at i:67476573 original size:36 final size:36
Alignment explanation
Indices: 67476366--67476578 Score: 115
Period size: 36 Copynumber: 5.7 Consensus size: 36
67476356 ATGTATGTAT
* * * *
67476366 TTGTCGATTTATTTAACTAGTGTTGGGTGCAACTCA
1 TTGTCGGTTTATTCAACTAGTGCTGGGCGCAACTCA
* ** * * * *
67476402 TTGTTGGTAAATTCAACTAGTGCTAGGCACACATTTGA
1 TTGTCGGTTTATTCAACTAGTGCTGGGCGCA-A-CTCA
**
67476440 TATCGTCGGTTTACCCAACTAGTG-TGGGGCGCAACTCA
1 T-T-GTCGGTTTATTCAACTAGTGCT-GGGCGCAACTCA
* ** * * *
67476478 TTATCGGTACATTCAACTAGTGCTGGGCACACATTTGA
1 TTGTCGGTTTATTCAACTAGTGCTGGGCGCA-A-CTCA
** * *
67476516 TATCGTTAGTTTACTT-GACTAGTGCTAGGCGCAACTCA
1 T-T-GTCGGTTTA-TTCAACTAGTGCTGGGCGCAACTCA
67476554 TTGTCGGTTTATTCAACTAGTGCTG
1 TTGTCGGTTTATTCAACTAGTGCTG
67476579 AGCACACTTT
Statistics
Matches: 123, Mismatches: 42, Indels: 24
0.65 0.22 0.13
Matches are distributed among these distances:
35 2 0.02
36 59 0.48
37 5 0.04
38 12 0.10
39 5 0.04
40 38 0.31
41 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (36 bp):
TTGTCGGTTTATTCAACTAGTGCTGGGCGCAACTCA
Found at i:67479489 original size:27 final size:27
Alignment explanation
Indices: 67479425--67479490 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
67479415 TAATTTACAA
* **
67479425 ATAAAAATATATAGTAATATAAATTAT
1 ATAAAAAAATATAAAAATATAAATTAT
* *
67479452 ATAATATAATATAAAAATATATAA-TAT
1 ATAAAAAAATATAAAAATATA-AATTAT
67479479 ATAAAAAAATAT
1 ATAAAAAAATAT
67479491 TATGATAGAT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
27 29 0.94
28 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (27 bp):
ATAAAAAAATATAAAAATATAAATTAT
Found at i:67481216 original size:12 final size:12
Alignment explanation
Indices: 67481199--67481224 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67481189 AAATAAATAA
67481199 TTATTTATTTTC
1 TTATTTATTTTC
67481211 TTATTTATTTTC
1 TTATTTATTTTC
67481223 TT
1 TT
67481225 TTGTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (12 bp):
TTATTTATTTTC
Found at i:67482675 original size:56 final size:56
Alignment explanation
Indices: 67482615--67482880 Score: 334
Period size: 56 Copynumber: 4.8 Consensus size: 56
67482605 TCCCAGACAG
* * * **
67482615 GGTCTTACTCGCACACATATATTGGAGTCACATATCGATGCCAACGTATAAAACGC
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATAAAACAT
* * *
67482671 GGTCTTACTCACACACATATATCGGGATCACATATTGATGCCAACATATAAAACAT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATAAAACAT
* * *
67482727 GGTCTTACTCGCACAGATATATCAGAATCACATATCGATGCCAACATATAAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATAAAACAT
* * * *** **
67482783 GGTCTTACTTGCACATATATATCGGAATCACATATTGATGTTGATGTATAAAACAT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATAAAACAT
* * *
67482839 GGTCTTTCTCGCACACATATATCAGAATCACATGTCGATGCC
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCC
67482881 TCAATACATC
Statistics
Matches: 178, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 178 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATAAAACAT
Found at i:67482787 original size:112 final size:112
Alignment explanation
Indices: 67482615--67482880 Score: 379
Period size: 112 Copynumber: 2.4 Consensus size: 112
67482605 TCCCAGACAG
** * *
67482615 GGTCTTACTCGCACACATATATTGGAGTCACATATCGATGCCAACGTATAAAACGCGGTCTTACT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATATAAAACGCGGTCTTACT
*
67482680 CACACACATATATCGGGATCACATATTGATGCCAACATATAAAACAT
66 CACACACATATATCGGAATCACATATTGATGCCAACATATAAAACAT
* *
67482727 GGTCTTACTCGCACAGATATATCAGAATCACATATCGATGCCAACATATAAAACGTGGTCTTACT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATATAAAACGCGGTCTTACT
** * *** **
67482792 TGCACATATATATCGGAATCACATATTGATGTTGATGTATAAAACAT
66 CACACACATATATCGGAATCACATATTGATGCCAACATATAAAACAT
* *
67482839 GGTCTTTCTCGCACACATATATCAGAATCACATGTCGATGCC
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCC
67482881 TCAATACATC
Statistics
Matches: 136, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
112 136 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (112 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATATAAAACGCGGTCTTACT
CACACACATATATCGGAATCACATATTGATGCCAACATATAAAACAT
Found at i:67484683 original size:20 final size:21
Alignment explanation
Indices: 67484637--67484683 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
67484627 TCTTTTGGTA
*
67484637 TTCATGATATATGTGATTGAG
1 TTCATGATATATGTAATTGAG
* *
67484658 AT-ATGATAT-TGTAATTTAG
1 TTCATGATATATGTAATTGAG
67484677 TTCATGA
1 TTCATGA
67484684 ATGGTTTTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 9 0.43
20 11 0.52
21 1 0.05
ACGTcount: A:0.32, C:0.04, G:0.19, T:0.45
Consensus pattern (21 bp):
TTCATGATATATGTAATTGAG
Found at i:67485231 original size:26 final size:26
Alignment explanation
Indices: 67485202--67485283 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
67485192 TGATACAAAT
67485202 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
**
67485228 TGATAATGGGTTAGGTAAATGTTTAA
1 TGATAATGGGTTAGGTAAATGTTCCA
67485254 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67485280 TGAT
1 TGAT
67485284 GCGAATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67492271 original size:25 final size:26
Alignment explanation
Indices: 67492213--67492292 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
67492203 TGATACAAAT
67492213 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67492239 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
67492264 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67492289 TGAT
1 TGAT
67492293 GGCAATTTCA
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
24 15 0.28
25 15 0.28
26 23 0.43
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67493800 original size:25 final size:26
Alignment explanation
Indices: 67493772--67493823 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
67493762 TTTACAGTTT
67493772 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
67493797 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
67493823 T
1 T
67493824 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:67501626 original size:142 final size:142
Alignment explanation
Indices: 67501367--67501656 Score: 544
Period size: 142 Copynumber: 2.0 Consensus size: 142
67501357 CTTCTACTTC
67501367 AATTATGCTCTTCAATTAAATCCTTTAACATCTAAAACTCATATTAATCAACTTTTGCAATTAAG
1 AATTATGCTCTTCAATTAAATCCTTTAACATCTAAAACTCATATTAATCAACTTTTGCAATTAAG
67501432 TCCTAATAGGCAAATTAAACACGCAATTCATGAAATTTTCTATCGATATTCTAACACATGCATCT
66 TCCTAATAGGCAAATTAAACACGCAATTCATGAAATTTTCTATCGATATTCTAACACATGCATCT
67501497 AATCACTCAATA
131 AATCACTCAATA
*
67501509 AATTATGCTCTTCAATTAAATCCTTTAACATCTAAAACTCATATTTATCAACTTTTGCAATTAAG
1 AATTATGCTCTTCAATTAAATCCTTTAACATCTAAAACTCATATTAATCAACTTTTGCAATTAAG
* * *
67501574 TCCTAATAGGCAAATTAGACATGCAATTCATGAAATTTTCTATCGATTTTCTAACACATGCATCT
66 TCCTAATAGGCAAATTAAACACGCAATTCATGAAATTTTCTATCGATATTCTAACACATGCATCT
67501639 AATCACTCAATA
131 AATCACTCAATA
67501651 AATTAT
1 AATTAT
67501657 AAAAATTAAT
Statistics
Matches: 144, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
142 144 1.00
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.36
Consensus pattern (142 bp):
AATTATGCTCTTCAATTAAATCCTTTAACATCTAAAACTCATATTAATCAACTTTTGCAATTAAG
TCCTAATAGGCAAATTAAACACGCAATTCATGAAATTTTCTATCGATATTCTAACACATGCATCT
AATCACTCAATA
Found at i:67509117 original size:24 final size:24
Alignment explanation
Indices: 67509090--67509137 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
67509080 TTCTCTTTAT
*
67509090 TTTTGGATTTTGGAATTGGTGTTC
1 TTTTGCATTTTGGAATTGGTGTTC
67509114 TTTTGCATTTTGGAATTGGTGTTC
1 TTTTGCATTTTGGAATTGGTGTTC
67509138 CAATATTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.06, G:0.27, T:0.54
Consensus pattern (24 bp):
TTTTGCATTTTGGAATTGGTGTTC
Found at i:67522220 original size:30 final size:30
Alignment explanation
Indices: 67522184--67522244 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
67522174 CACAGACTGG
*
67522184 CACATGGGCGTGTGGCCTGCCCGTGTGGAT
1 CACATGGGCGTGTGCCCTGCCCGTGTGGAT
*
67522214 CACATGGGCGTGTGCCCTGCCTGTGTGGAT
1 CACATGGGCGTGTGCCCTGCCCGTGTGGAT
67522244 C
1 C
67522245 CTGAAAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.10, C:0.28, G:0.38, T:0.25
Consensus pattern (30 bp):
CACATGGGCGTGTGCCCTGCCCGTGTGGAT
Found at i:67523119 original size:12 final size:12
Alignment explanation
Indices: 67523089--67523119 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
67523079 TTTTTTCACC
67523089 TTTTTTTCTTTT
1 TTTTTTTCTTTT
*
67523101 TCTTTTTCTTTT
1 TTTTTTTCTTTT
67523113 TTTTTTT
1 TTTTTTT
67523120 GAGAACAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:67524016 original size:51 final size:41
Alignment explanation
Indices: 67523971--67524061 Score: 164
Period size: 41 Copynumber: 2.2 Consensus size: 41
67523961 AATAAACACA
*
67523971 AATAATAATGAAAATTAAGGGGTTATAACTTGATTAGAAAC
1 AATAATAAAGAAAATTAAGGGGTTATAACTTGATTAGAAAC
67524012 AATAATAAAGAAAATTAAGGGGTTATAACTTGATTAGAAAC
1 AATAATAAAGAAAATTAAGGGGTTATAACTTGATTAGAAAC
*
67524053 AATCATAAA
1 AATAATAAA
67524062 TCTTTCAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.52, C:0.05, G:0.15, T:0.27
Consensus pattern (41 bp):
AATAATAAAGAAAATTAAGGGGTTATAACTTGATTAGAAAC
Found at i:67524160 original size:8 final size:8
Alignment explanation
Indices: 67524147--67524186 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
67524137 AAAAAGAACG
67524147 ATAAAATA
1 ATAAAATA
67524155 ATAAAATA
1 ATAAAATA
67524163 AT--AATA
1 ATAAAATA
67524169 AT--AATA
1 ATAAAATA
67524175 ATAAAATA
1 ATAAAATA
67524183 ATAA
1 ATAA
67524187 TAAACTCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 12 0.40
8 18 0.60
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
ATAAAATA
Found at i:67524173 original size:17 final size:17
Alignment explanation
Indices: 67524147--67524189 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
67524137 AAAAAGAACG
67524147 ATAA-AATAATAA-AATA
1 ATAATAATAATAATAA-A
67524163 ATAATAATAATAATAAA
1 ATAATAATAATAATAAA
67524180 ATAATAATAA
1 ATAATAATAA
67524190 ACTCAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.16
17 19 0.76
18 2 0.08
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
ATAATAATAATAATAAA
Found at i:67524181 original size:28 final size:27
Alignment explanation
Indices: 67524070--67524208 Score: 93
Period size: 28 Copynumber: 4.8 Consensus size: 27
67524060 AATCTTTCAA
* *
67524070 AAAAAATAATAATGAA-AATAAATTGAAG
1 AAAAAATAATAAT-AATAATAAAAT-AAT
* *
67524098 AAAAAATAATAATAATAATAAAACAAC
1 AAAAAATAATAATAATAATAAAATAAT
* * *
67524125 AAAAACAAAATTAAAAAGAACGATAAAATAAT
1 AAAAA-ATAA-TAATAA-TA--ATAAAATAAT
67524157 AAAATAATAATAATAATAATAAAATAAT
1 AAAA-AATAATAATAATAATAAAATAAT
*
67524185 AATAAACTCAATAAT-ATCAATAAA
1 AA-AAAAT-AATAATAAT-AATAAA
67524209 CTTAAAAGGT
Statistics
Matches: 89, Mismatches: 12, Indels: 19
0.74 0.10 0.16
Matches are distributed among these distances:
27 9 0.10
28 38 0.43
29 19 0.21
30 2 0.02
31 5 0.06
32 15 0.17
33 1 0.01
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.22
Consensus pattern (27 bp):
AAAAAATAATAATAATAATAAAATAAT
Found at i:67524200 original size:3 final size:3
Alignment explanation
Indices: 67524147--67524189 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
67524137 AAAAAGAACG
67524147 ATA A-A ATA ATA A-A ATA ATA ATA ATA ATA ATA A-A ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
67524190 ACTCAATAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 6 0.16
3 31 0.84
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:67524200 original size:23 final size:20
Alignment explanation
Indices: 67524098--67524189 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 20
67524088 TAAATTGAAG
67524098 AAAA-AATAATAATAATAAT
1 AAAATAATAATAATAATAAT
* * * *
67524117 AAAACAACAAAAACAA-AATT
1 AAAATAATAATAATAATAA-T
* **
67524137 AAAAAGAACGATAA-AATAAT
1 -AAAATAATAATAATAATAAT
67524157 AAAATAATAATAATAATAAT
1 AAAATAATAATAATAATAAT
67524177 AAAATAATAATAA
1 AAAATAATAATAA
67524190 ACTCAATAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
19 16 0.27
20 31 0.53
21 12 0.20
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (20 bp):
AAAATAATAATAATAATAAT
Found at i:67524263 original size:22 final size:22
Alignment explanation
Indices: 67524237--67524296 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
67524227 TGATAATAGT
67524237 AAAAATAAAAAAATACGAAAGA-
1 AAAAATAAAAAAATA-GAAAGAG
* *
67524259 AAAAAGAAAAAAATAGAAATAG
1 AAAAATAAAAAAATAGAAAGAG
*
67524281 CAAAATAAAAATAATA
1 AAAAATAAAAA-AATA
67524297 ATAATAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 5 0.16
22 23 0.72
23 4 0.12
ACGTcount: A:0.77, C:0.03, G:0.08, T:0.12
Consensus pattern (22 bp):
AAAAATAAAAAAATAGAAAGAG
Found at i:67524316 original size:26 final size:24
Alignment explanation
Indices: 67524287--67524334 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
67524277 ATAGCAAAAT
67524287 AAAAATAATAATAATAAAAGTATATA
1 AAAAAT-ATAA-AATAAAAGTATATA
* *
67524313 AAAAATTTAAAATATAAGTATA
1 AAAAATATAAAATAAAAGTATA
67524335 AGAATACTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 3 0.15
26 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (24 bp):
AAAAATATAAAATAAAAGTATATA
Found at i:67524384 original size:22 final size:20
Alignment explanation
Indices: 67524366--67524417 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
67524356 AATTAATTAG
67524366 TAAAATAAAAATAAATAATA
1 TAAAATAAAAATAAATAATA
*
67524386 TAACAATTAAAAATAAATAAAA
1 TAA-AA-TAAAAATAAATAATA
67524408 TAAAATAAAA
1 TAAAATAAAA
67524418 CTGGGGTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 8 0.28
21 4 0.14
22 17 0.59
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAAATAAAAATAAATAATA
Found at i:67529480 original size:27 final size:27
Alignment explanation
Indices: 67529442--67529493 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
67529432 GTGTGAGAAT
67529442 GATTCTTCTTCTGCCTTCAATGCTAAG
1 GATTCTTCTTCTGCCTTCAATGCTAAG
*
67529469 GATTCTTCTTCTTCCTTCAATGCTA
1 GATTCTTCTTCTGCCTTCAATGCTA
67529494 TTTTTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.17, C:0.27, G:0.12, T:0.44
Consensus pattern (27 bp):
GATTCTTCTTCTGCCTTCAATGCTAAG
Found at i:67531301 original size:25 final size:25
Alignment explanation
Indices: 67531272--67531324 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
67531262 ACTATCCTCC
67531272 AAGGTATTTTGTAATAAAGCTCACT
1 AAGGTATTTTGTAATAAAGCTCACT
67531297 AAGGTATTTTGTAATAAAGCTCACT
1 AAGGTATTTTGTAATAAAGCTCACT
67531322 AAG
1 AAG
67531325 TTATCTTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (25 bp):
AAGGTATTTTGTAATAAAGCTCACT
Found at i:67531542 original size:5 final size:5
Alignment explanation
Indices: 67531532--67531558 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
67531522 CCTGTTGTAA
67531532 TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TA
67531559 AATATTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:67536761 original size:17 final size:19
Alignment explanation
Indices: 67536741--67536779 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
67536731 AGGTTAGATC
67536741 TATTTTTC-CA-TTTTCTT
1 TATTTTTCACATTTTTCTT
67536758 TATTTTTCTACATTTTTCTT
1 TATTTTTC-ACATTTTTCTT
67536778 TA
1 TA
67536780 ATTAAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
19 2 0.11
20 9 0.47
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (19 bp):
TATTTTTCACATTTTTCTT
Found at i:67537605 original size:32 final size:32
Alignment explanation
Indices: 67537558--67537618 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
67537548 GGACTGCTCT
*
67537558 AAGTGTTTTAATGTACAATTACAAATATTTCA
1 AAGTGTTTCAATGTACAATTACAAATATTTCA
* *
67537590 AAGTGTTTCATTGTACACTTACAAATATT
1 AAGTGTTTCAATGTACAATTACAAATATT
67537619 ACAACTAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (32 bp):
AAGTGTTTCAATGTACAATTACAAATATTTCA
Found at i:67538122 original size:32 final size:32
Alignment explanation
Indices: 67538075--67538135 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
67538065 GGACTGCTCT
*
67538075 AAGTGTTTTAATGTACAATTACAAATATTTCA
1 AAGTGTTTCAATGTACAATTACAAATATTTCA
* *
67538107 AAGTGTTTCATTGTACACTTACAAATATT
1 AAGTGTTTCAATGTACAATTACAAATATT
67538136 ACAACTAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (32 bp):
AAGTGTTTCAATGTACAATTACAAATATTTCA
Found at i:67538425 original size:517 final size:517
Alignment explanation
Indices: 67537452--67538488 Score: 2056
Period size: 517 Copynumber: 2.0 Consensus size: 517
67537442 TAGCTTAATT
67537452 CAACTCATTTTATGGATTGTCGTAATATACTACTTAGTCATTAGCATGCTTGATTCCATTCACCT
1 CAACTCATTTTATGGATTGTCGTAATATACTACTTAGTCATTAGCATGCTTGATTCCATTCACCT
*
67537517 TATCACCCGATCTCCGTTGGGTTCGATCCTTGGACTGCTCTAAGTGTTTTAATGTACAATTACAA
66 TATCACCCGATCTCCGTTGGGTTCGATCCTCGGACTGCTCTAAGTGTTTTAATGTACAATTACAA
67537582 ATATTTCAAAGTGTTTCATTGTACACTTACAAATATTACAACTAACATGTCATATTTGTAGTCAA
131 ATATTTCAAAGTGTTTCATTGTACACTTACAAATATTACAACTAACATGTCATATTTGTAGTCAA
*
67537647 AGCCACTTTTAAATCTCTATATTTTGTGCTAATTCTCTTCTCGGTGTTGTACATTAGTATGCGGT
196 AGCCACTTTTAAATCTCTATATTTTGTGCTAATTCTCTTCTCGGTGTTGTACATTAGTATGAGGT
67537712 CAAGAACCCTTTCCTACATCTATGGGGCCTTGTCTAGAGAATATAATACAATATGGATCAATAGT
261 CAAGAACCCTTTCCTACATCTATGGGGCCTTGTCTAGAGAATATAATACAATATGGATCAATAGT
67537777 GCAGGTTGTAATCTAACTTCAACCTTACTCCTATGCATCCATTAAAATCATTTTTCCCACTAAGA
326 GCAGGTTGTAATCTAACTTCAACCTTACTCCTATGCATCCATTAAAATCATTTTTCCCACTAAGA
67537842 CTTTCCCCTTAAAAGCTTAGTTACAAATTGAACATCAAAATTGTTTGTTTACGATCAATTTAACC
391 CTTTCCCCTTAAAAGCTTAGTTACAAATTGAACATCAAAATTGTTTGTTTACGATCAATTTAACC
67537907 TTAATACAAGTTCCTATAATGAAAAAATAAGTGTTCTTTCTAATTCGTCATAGGCATATAAA
456 TTAATACAAGTTCCTATAATGAAAAAATAAGTGTTCTTTCTAATTCGTCATAGGCATATAAA
67537969 CAACTCATTTTATGGATTGTCGTAATATACTACTTAGTCATTAGCATGCTTGATTCCATTCACCT
1 CAACTCATTTTATGGATTGTCGTAATATACTACTTAGTCATTAGCATGCTTGATTCCATTCACCT
67538034 TATCACCCGATCTCCGTTGGGTTCGATCCTCGGACTGCTCTAAGTGTTTTAATGTACAATTACAA
66 TATCACCCGATCTCCGTTGGGTTCGATCCTCGGACTGCTCTAAGTGTTTTAATGTACAATTACAA
67538099 ATATTTCAAAGTGTTTCATTGTACACTTACAAATATTACAACTAACATGTCATATTTGTAGTCAA
131 ATATTTCAAAGTGTTTCATTGTACACTTACAAATATTACAACTAACATGTCATATTTGTAGTCAA
67538164 AGCCACTTTTAAATCTCTATATTTTGTGCTAATTCTCTTCTCGGTGTTGTACATTAGTATGAGGT
196 AGCCACTTTTAAATCTCTATATTTTGTGCTAATTCTCTTCTCGGTGTTGTACATTAGTATGAGGT
67538229 CAAGAACCCTTTCCTACATCTATGGGGCCTTGTCTAGAGAATATAATACAATATGGATCAATAGT
261 CAAGAACCCTTTCCTACATCTATGGGGCCTTGTCTAGAGAATATAATACAATATGGATCAATAGT
67538294 GCAGGTTGTAATCTAACTTCAACCTTACTCCTATGCATCCATTAAAATCATTTTTCCCACTAAGA
326 GCAGGTTGTAATCTAACTTCAACCTTACTCCTATGCATCCATTAAAATCATTTTTCCCACTAAGA
67538359 CTTTCCCCTTAAAAGCTTAGTTACAAATTGAACATCAAAATTGTTTGTTTACGATCAATTTAACC
391 CTTTCCCCTTAAAAGCTTAGTTACAAATTGAACATCAAAATTGTTTGTTTACGATCAATTTAACC
67538424 TTAATACAAGTTCCTATAATGAAAAAATAAGTGTTCTTTCTAATTCGTCATAGGCATATAAA
456 TTAATACAAGTTCCTATAATGAAAAAATAAGTGTTCTTTCTAATTCGTCATAGGCATATAAA
67538486 CAA
1 CAA
67538489 GTCTTCTTTA
Statistics
Matches: 518, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
517 518 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.37
Consensus pattern (517 bp):
CAACTCATTTTATGGATTGTCGTAATATACTACTTAGTCATTAGCATGCTTGATTCCATTCACCT
TATCACCCGATCTCCGTTGGGTTCGATCCTCGGACTGCTCTAAGTGTTTTAATGTACAATTACAA
ATATTTCAAAGTGTTTCATTGTACACTTACAAATATTACAACTAACATGTCATATTTGTAGTCAA
AGCCACTTTTAAATCTCTATATTTTGTGCTAATTCTCTTCTCGGTGTTGTACATTAGTATGAGGT
CAAGAACCCTTTCCTACATCTATGGGGCCTTGTCTAGAGAATATAATACAATATGGATCAATAGT
GCAGGTTGTAATCTAACTTCAACCTTACTCCTATGCATCCATTAAAATCATTTTTCCCACTAAGA
CTTTCCCCTTAAAAGCTTAGTTACAAATTGAACATCAAAATTGTTTGTTTACGATCAATTTAACC
TTAATACAAGTTCCTATAATGAAAAAATAAGTGTTCTTTCTAATTCGTCATAGGCATATAAA
Found at i:67545487 original size:24 final size:24
Alignment explanation
Indices: 67545460--67545509 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
67545450 TGAACCATGG
67545460 GTTCATGAAATGGTTATTAATATA
1 GTTCATGAAATGGTTATTAATATA
*
67545484 GTTCATGAAATGGTTATTGATATA
1 GTTCATGAAATGGTTATTAATATA
67545508 GT
1 GT
67545510 GAGATGATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.04, G:0.20, T:0.42
Consensus pattern (24 bp):
GTTCATGAAATGGTTATTAATATA
Found at i:67551848 original size:30 final size:30
Alignment explanation
Indices: 67551814--67551872 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
67551804 CACCTCAAAG
67551814 GTGAATGGGAGGCGAGAGACCCCAAACTGT
1 GTGAATGGGAGGCGAGAGACCCCAAACTGT
67551844 GTGAATGGGAGGCGAGAGACCCCAAACTG
1 GTGAATGGGAGGCGAGAGACCCCAAACTG
67551873 ATCAACTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.20, G:0.37, T:0.12
Consensus pattern (30 bp):
GTGAATGGGAGGCGAGAGACCCCAAACTGT
Found at i:67565207 original size:45 final size:44
Alignment explanation
Indices: 67565141--67565774 Score: 374
Period size: 44 Copynumber: 14.2 Consensus size: 44
67565131 TCGTGGCGAG
* * * *
67565141 TCTTATCTCCCTAAAGTTGCAATGGAGTAGATTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA-CAAA
* * * * * * *
67565186 TTTTATCTCTCTGAAGTTGCAATAGAGCAAATTAAAGTTACAAT
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAA
*
67565230 TC-TATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA-CAAA
* * * *
67565274 TCTTATCTCTCTGAAGTTGTAGTAGAACAGATTGAAGTTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAA
* * * *
67565318 TCTTATCTCACTGAAGTTGTAGTGGAGCAGATTGGAA-CTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATT-GAAGATACAAA
* *
67565362 TCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA-CAAA
* * * * * *
67565407 TCTTATTTCCCTGAAG-TGTAGTGGAACAAATTAAAGCTACAAGTTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATT---G----AAGATACAAA
* * * * * *
67565457 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGAATAAAGCTAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATA-CAAA
* * ** *
67565502 CCTTATTTCCCTGAAGTTGCAGCGGAGTAGATT-AA-A-ACTAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAC-AAA
* * * ** * * *
67565544 TCCTATAC-CTCTGAAGTTGCAATAG-GTCAGACTAAATCTAGCGTGGCGAA
1 TCTTAT-CTCCCTGAAGTTGCAGTAGAG-CAGA-T---TGAAG-AT-ACAAA
* * * *
67565594 TTTTATCTCCCTGAAGTTGCA-AATGAGCAAATTGAAGTTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTA-GAGCAGATTGAAGATACAAA
* * ** * *
67565638 TCTTACCTCCTTGAAGTTATAGTGGAGCAGATTGAAGTTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAA
* * * * **
67565682 TCTTATCTCCCTAAAGTTCCAGTGGAGCAAATT-AA-A-ATGAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAA
* * * * *
67565723 TATTATCTCCCTGAAGTTGCAGTAGAACCGATTGAAGTTACTAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAA
67565767 TCTTATCT
1 TCTTATCT
67565775 TTCAAAAGTT
Statistics
Matches: 461, Mismatches: 95, Indels: 67
0.74 0.15 0.11
Matches are distributed among these distances:
41 31 0.07
42 26 0.06
43 39 0.08
44 176 0.38
45 120 0.26
46 4 0.01
47 2 0.00
49 3 0.01
50 40 0.09
51 20 0.04
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATACAAA
Found at i:67566896 original size:36 final size:36
Alignment explanation
Indices: 67566849--67566928 Score: 142
Period size: 36 Copynumber: 2.2 Consensus size: 36
67566839 CTATATGACG
*
67566849 TCGTTTTGGGCTTAATTTTCAGACATCAAAACGACA
1 TCGTTTTGGGCTTAATTTTCAGACACCAAAACGACA
*
67566885 TCGTTTTGGGCTTAATTTTCAGACACCAAAACGACG
1 TCGTTTTGGGCTTAATTTTCAGACACCAAAACGACA
67566921 TCGTTTTG
1 TCGTTTTG
67566929 ACACAATTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (36 bp):
TCGTTTTGGGCTTAATTTTCAGACACCAAAACGACA
Found at i:67568194 original size:35 final size:35
Alignment explanation
Indices: 67568113--67568185 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
67568103 GAATCCATAG
67568113 AGACTGATTATCTAATTTTTGCCTTTTTTGTGACC
1 AGACTGATTATCTAATTTTTGCCTTTTTTGTGACC
67568148 AGACTGATTATCTAATTTTTGCCTTTTTTGTGACC
1 AGACTGATTATCTAATTTTTGCCTTTTTTGTGACC
67568183 AGA
1 AGA
67568186 TTTGTTATCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.22, C:0.16, G:0.15, T:0.47
Consensus pattern (35 bp):
AGACTGATTATCTAATTTTTGCCTTTTTTGTGACC
Found at i:67568332 original size:18 final size:19
Alignment explanation
Indices: 67568309--67568356 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 19
67568299 GATTCAAAAT
67568309 AGCAAA-AAAATAAATTTA
1 AGCAAATAAAATAAATTTA
*
67568327 AGCAAATAAAGTAAATTT-
1 AGCAAATAAAATAAATTTA
*
67568345 -GTAAATAAAATA
1 AGCAAATAAAATA
67568357 TTTTAAACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 10 0.38
18 6 0.23
19 10 0.38
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.25
Consensus pattern (19 bp):
AGCAAATAAAATAAATTTA
Found at i:67568343 original size:19 final size:18
Alignment explanation
Indices: 67568309--67568344 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
67568299 GATTCAAAAT
67568309 AGCAAAAAAATAAATTTA
1 AGCAAAAAAATAAATTTA
*
67568327 AGCAAATAAAGTAAATTT
1 AGCAAA-AAAATAAATTT
67568345 GTAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.61, C:0.06, G:0.08, T:0.25
Consensus pattern (18 bp):
AGCAAAAAAATAAATTTA
Done.