Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 216 of 325
Found at i:67568593 original size:13 final size:13
Alignment explanation
Indices: 67568575--67568600 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67568565 AAAGTCTGTT
67568575 TTTGGTTGTAGTG
1 TTTGGTTGTAGTG
67568588 TTTGGTTGTAGTG
1 TTTGGTTGTAGTG
67568601 ACTAATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.38, T:0.54
Consensus pattern (13 bp):
TTTGGTTGTAGTG
Found at i:67568724 original size:23 final size:22
Alignment explanation
Indices: 67568650--67568722 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 22
67568640 TAGATTTTTC
*
67568650 TTAAATATTATGAATAAATAAT
1 TTAAATATTATCAATAAATAAT
*
67568672 TCTAAATATTATTAATAAATAATT
1 T-TAAATATTATCAATAAATAA-T
*
67568696 TTAAATATTATCACTAAATAAT
1 TTAAATATTATCAATAAATAAT
67568718 TTAAA
1 TTAAA
67568723 ATTTAAATCA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
22 7 0.15
23 37 0.80
24 2 0.04
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.42
Consensus pattern (22 bp):
TTAAATATTATCAATAAATAAT
Found at i:67568738 original size:18 final size:19
Alignment explanation
Indices: 67568715--67568758 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
67568705 ATCACTAAAT
*
67568715 AATTTAAAATT-TAAATCA
1 AATTTAAAATTAAAAATCA
*
67568733 AATTT-AAATTAAAAATTA
1 AATTTAAAATTAAAAATCA
67568751 AATTTAAA
1 AATTTAAA
67568759 CTAATTACAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 5 0.23
18 15 0.68
19 2 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
AATTTAAAATTAAAAATCA
Found at i:67573796 original size:22 final size:22
Alignment explanation
Indices: 67573771--67573815 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
67573761 AATATTAAAT
67573771 ATTTATTCTTGTAATTTAATCA
1 ATTTATTCTTGTAATTTAATCA
67573793 ATTTATTCTTGTAATTTAATCA
1 ATTTATTCTTGTAATTTAATCA
67573815 A
1 A
67573816 GTAATACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.53
Consensus pattern (22 bp):
ATTTATTCTTGTAATTTAATCA
Found at i:67578562 original size:17 final size:17
Alignment explanation
Indices: 67578529--67578579 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
67578519 TTAAAATATT
*
67578529 AAAC-CTAAAATTA-AA
1 AAACACTAAAAATATAA
* *
67578544 AAATA-TAAAACTATAA
1 AAACACTAAAAATATAA
67578560 AAACACTAAAAATATAA
1 AAACACTAAAAATATAA
67578577 AAA
1 AAA
67578580 TAAATATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 10 0.34
16 6 0.21
17 13 0.45
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.20
Consensus pattern (17 bp):
AAACACTAAAAATATAA
Found at i:67578580 original size:8 final size:8
Alignment explanation
Indices: 67578542--67578581 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
67578532 CCTAAAATTA
67578542 AAAAATAT
1 AAAAATAT
*
67578550 AAAACTAT
1 AAAAATAT
*
67578558 AAAAACACT
1 AAAAATA-T
67578567 AAAAATAT
1 AAAAATAT
67578575 AAAAATA
1 AAAAATA
67578582 AATATTTCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.20
Consensus pattern (8 bp):
AAAAATAT
Found at i:67579176 original size:3 final size:3
Alignment explanation
Indices: 67579163--67579212 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
67579153 GTTTAAAAAG
* * * *
67579163 AGA AAA AGA AGA AGT AGA AGA AG- AGG AGA AGA AGA AGA AGA GGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
67579210 AGA
1 AGA
67579213 GAAAAAATAG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:67579187 original size:23 final size:23
Alignment explanation
Indices: 67579160--67579218 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 23
67579150 AGGGTTTAAA
67579160 AAGAGAAAAAGAAGAAGTA-GAAG
1 AAGAGAAAAAGAAGAAG-AGGAAG
67579183 AAGAGGAGAAGAAGAAGAAGAGGAAG
1 AAGA-GA-AA-AAGAAGAAGAGGAAG
67579209 AAGAGAAAAA
1 AAGAGAAAAA
67579219 ATAGAGATGC
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
23 6 0.19
24 4 0.12
25 5 0.16
26 17 0.53
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (23 bp):
AAGAGAAAAAGAAGAAGAGGAAG
Found at i:67588926 original size:21 final size:21
Alignment explanation
Indices: 67588902--67588943 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
67588892 TTGAATTAAG
67588902 TGAATTAAAATATTA-TATGAT
1 TGAATTAAAATA-TAGTATGAT
*
67588923 TGAATTAATATATAGTATGAT
1 TGAATTAAAATATAGTATGAT
67588944 AAATGTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (21 bp):
TGAATTAAAATATAGTATGAT
Found at i:67590778 original size:14 final size:15
Alignment explanation
Indices: 67590741--67590778 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
67590731 ACTAGTAGTA
67590741 GGGATTTTGAGACTT
1 GGGATTTTGAGACTT
*
67590756 GGAGATTTT-AGATTT
1 GG-GATTTTGAGACTT
67590771 GGGATTTT
1 GGGATTTT
67590779 CAATTTAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 6 0.29
15 9 0.43
16 6 0.29
ACGTcount: A:0.21, C:0.03, G:0.32, T:0.45
Consensus pattern (15 bp):
GGGATTTTGAGACTT
Found at i:67592054 original size:37 final size:37
Alignment explanation
Indices: 67592004--67592082 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67591994 CTTATTACAA
* * *
67592004 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
67592041 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
67592078 GTCTT
1 GTCTT
67592083 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:67592279 original size:47 final size:47
Alignment explanation
Indices: 67592201--67592751 Score: 944
Period size: 47 Copynumber: 11.7 Consensus size: 47
67592191 CCCTTCGGGA
* * * * * *
67592201 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67592248 CCTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67592295 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67592342 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67592389 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67592436 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67592483 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67592530 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67592577 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67592623 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67592670 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67592717 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
67592752 AGAATCCTAA
Statistics
Matches: 481, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 46 0.10
47 435 0.90
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67597675 original size:2 final size:2
Alignment explanation
Indices: 67597663--67597693 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
67597653 ATGTCAGTGA
67597663 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67597694 GGTTTTAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67599657 original size:47 final size:47
Alignment explanation
Indices: 67599581--67599676 Score: 147
Period size: 47 Copynumber: 2.0 Consensus size: 47
67599571 GTTGCAAAAA
* **
67599581 CACCTTATAAGCTTTGGATAGGTTGAAAGCCTAGTCTAAAACACTTT
1 CACCTTATAAGCTTTGGACAGGTCAAAAGCCTAGTCTAAAACACTTT
* *
67599628 CACCTTATAAGCTTTTGACAGGTCAAAAGCCTAGTGTAAAACACTTT
1 CACCTTATAAGCTTTGGACAGGTCAAAAGCCTAGTCTAAAACACTTT
67599675 CA
1 CA
67599677 TATTTAAGGA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (47 bp):
CACCTTATAAGCTTTGGACAGGTCAAAAGCCTAGTCTAAAACACTTT
Found at i:67609217 original size:30 final size:30
Alignment explanation
Indices: 67609183--67609242 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67609173 ATTTAATACG
67609183 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67609213 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67609243 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67617984 original size:29 final size:29
Alignment explanation
Indices: 67617942--67618001 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
67617932 TATAGCTTAG
*
67617942 TAAGCTCGTATGCAAGAAATAAGCAACCT
1 TAAGCTCGTATGCAAAAAATAAGCAACCT
67617971 TAAGCTCGTATGCAAAAAATAAGCAACCT
1 TAAGCTCGTATGCAAAAAATAAGCAACCT
67618000 TA
1 TA
67618002 CCATGCATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (29 bp):
TAAGCTCGTATGCAAAAAATAAGCAACCT
Found at i:67621644 original size:15 final size:15
Alignment explanation
Indices: 67621624--67621653 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67621614 CATTTTATTG
*
67621624 ATATTAGGATAATTA
1 ATATTAAGATAATTA
67621639 ATATTAAGATAATTA
1 ATATTAAGATAATTA
67621654 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:67621697 original size:10 final size:10
Alignment explanation
Indices: 67621682--67621709 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
67621672 AGGATTTAAT
67621682 TTTAATTATC
1 TTTAATTATC
67621692 TTTAATTATC
1 TTTAATTATC
67621702 TTTAATTA
1 TTTAATTA
67621710 AATGTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTAATTATC
Found at i:67628107 original size:18 final size:16
Alignment explanation
Indices: 67628070--67628114 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
67628060 AGGCAACCCA
67628070 ATTTT-TTTTATTTTT
1 ATTTTATTTTATTTTT
67628085 A-TTTATTTTATATTATT
1 ATTTTATTTTAT-TT-TT
67628102 ATTTTATTTTATT
1 ATTTTATTTTATT
67628115 CAGATATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.12
15 7 0.27
16 2 0.08
17 4 0.15
18 10 0.38
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
ATTTTATTTTATTTTT
Found at i:67629668 original size:15 final size:15
Alignment explanation
Indices: 67629648--67629677 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67629638 CATTTTATTT
*
67629648 ATATTAGGATAATTA
1 ATATTAAGATAATTA
67629663 ATATTAAGATAATTA
1 ATATTAAGATAATTA
67629678 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:67629705 original size:27 final size:26
Alignment explanation
Indices: 67629644--67629706 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
67629634 ACTCCATTTT
67629644 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
67629671 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
67629699 ATTTTATT
1 ATTTTATT
67629707 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:67629721 original size:10 final size:10
Alignment explanation
Indices: 67629702--67629733 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
67629692 TTTTAGGATT
67629702 TTAT-TTTAA
1 TTATCTTTAA
67629711 TTATCTTTAA
1 TTATCTTTAA
67629721 TTATCTTTAA
1 TTATCTTTAA
67629731 TTA
1 TTA
67629734 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:67629902 original size:7 final size:7
Alignment explanation
Indices: 67629890--67629919 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
67629880 TTCAATAAAA
67629890 TTCCCTT
1 TTCCCTT
67629897 TTCCCTT
1 TTCCCTT
67629904 TTCCCTT
1 TTCCCTT
*
67629911 TTCCATT
1 TTCCCTT
67629918 TT
1 TT
67629920 TATATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.03, C:0.37, G:0.00, T:0.60
Consensus pattern (7 bp):
TTCCCTT
Found at i:67635907 original size:82 final size:81
Alignment explanation
Indices: 67635791--67635946 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
67635781 AAATTGTACA
* * * *
67635791 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
67635855 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67635872 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
67635937 TGCGAGTTGA
65 TGCGAATTGA
67635947 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67635914 original size:55 final size:52
Alignment explanation
Indices: 67635790--67635943 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
67635780 TAAATTGTAC
* *
67635790 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
67635843 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
67635898 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
67635944 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:67635948 original size:27 final size:27
Alignment explanation
Indices: 67635791--67635946 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
67635781 AAATTGTACA
*
67635791 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
67635818 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
67635845 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
67635872 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
67635900 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
67635927 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
67635947 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:67635957 original size:27 final size:27
Alignment explanation
Indices: 67635783--67635967 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
67635773 GCGGGATTAA
*
67635783 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
67635810 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
67635837 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
67635864 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
67635892 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
67635919 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
67635946 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
67635968 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:67635958 original size:82 final size:81
Alignment explanation
Indices: 67635783--67635967 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
67635773 GCGGGATTAA
* * * *
67635783 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
67635848 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
67635864 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
67635928 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
67635946 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
67635968 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:67643981 original size:82 final size:81
Alignment explanation
Indices: 67643865--67644020 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
67643855 AAATTGTACA
* * * *
67643865 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
67643929 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67643946 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
67644011 TGCGAGTTGA
65 TGCGAATTGA
67644021 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67643988 original size:55 final size:52
Alignment explanation
Indices: 67643864--67644017 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
67643854 TAAATTGTAC
* *
67643864 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
67643917 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
67643972 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
67644018 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:67644022 original size:27 final size:27
Alignment explanation
Indices: 67643865--67644020 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
67643855 AAATTGTACA
*
67643865 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
67643892 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
67643919 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
67643946 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
67643974 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
67644001 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
67644021 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:67644031 original size:27 final size:27
Alignment explanation
Indices: 67643857--67644041 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
67643847 GCGGGATTAA
*
67643857 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
67643884 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
67643911 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
67643938 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
67643966 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
67643993 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
67644020 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
67644042 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:67644032 original size:82 final size:81
Alignment explanation
Indices: 67643857--67644041 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
67643847 GCGGGATTAA
* * * *
67643857 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
67643922 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
67643938 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
67644002 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
67644020 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
67644042 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:67645759 original size:56 final size:56
Alignment explanation
Indices: 67645540--67645729 Score: 308
Period size: 56 Copynumber: 3.4 Consensus size: 56
67645530 CATGGCATCA
*
67645540 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATGGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTCG
* * * * * *
67645596 ATATATGTGTGTGAGTAAGACCACATTTAATACATTAGCATCAATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTCG
*
67645652 ATATATGTGTGTGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTCG
67645708 ATATATGTGTGCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
67645730 CTGTCTGGGA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 121 1.00
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTCG
Found at i:67651230 original size:46 final size:45
Alignment explanation
Indices: 67651171--67651336 Score: 203
Period size: 45 Copynumber: 3.6 Consensus size: 45
67651161 CCGCCCATAA
*
67651171 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAGT
* * *
67651217 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAGT
* *
67651264 GAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAGT
67651309 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
67651337 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 3 0.03
45 28 0.27
46 27 0.26
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAGT
Found at i:67651329 original size:92 final size:93
Alignment explanation
Indices: 67651171--67651340 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
67651161 CCGCCCATAA
* *
67651171 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67651236 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67651264 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67651328 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67651341 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 44 0.59
93 30 0.41
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67656850 original size:93 final size:91
Alignment explanation
Indices: 67656693--67656861 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 91
67656683 CCGCCCATAA
*
67656693 GAACTCGGACTCAACTCAACGAGCTCAGCGTTCCATCCATGAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCAGCGTTCCATCCATAAGTGAACTCGGACTCAACTCAACG
67656758 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
* * * *
67656784 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAG-C-GTTCCATCCATAAGTGAACTCGGACTCAACTCAA
67656849 CGAGTTCGGATGC
64 CGAGTTCGGATGC
67656862 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 26 0.37
92 1 0.01
93 44 0.62
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCAGCGTTCCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:67656851 original size:46 final size:46
Alignment explanation
Indices: 67656693--67656858 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
67656683 CCGCCCATAA
* * * *
67656693 GAACTCGGACTCAACTCAACGAGCTCAG-C-GTTCCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACAGTTACATCCATAAGT
* *
67656737 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-AGTTACATCCATAAGT
* *
67656784 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACAGTTACATCCATAAGT
67656830 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
67656859 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 6 0.06
44 28 0.27
45 2 0.02
46 29 0.28
47 29 0.28
48 3 0.03
49 1 0.01
50 6 0.06
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACAGTTACATCCATAAGT
Found at i:67656877 original size:46 final size:46
Alignment explanation
Indices: 67656734--67656870 Score: 133
Period size: 47 Copynumber: 3.0 Consensus size: 46
67656724 TCCATCCATG
67656734 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCTC
* * * *
67656782 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTC
67656827 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
67656871 CTAGTGACAT
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
44 7 0.10
45 3 0.04
46 28 0.38
47 30 0.41
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTC
Found at i:67660122 original size:22 final size:22
Alignment explanation
Indices: 67660074--67660122 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
67660064 GTGGTCTAGT
*
67660074 GGCAAAGTAGTGCCACATAAGA
1 GGCAGAGTAGTGCCACATAAGA
67660096 GGCAGAGTAGTGCCACATAAGA
1 GGCAGAGTAGTGCCACATAAGA
67660118 GGCAG
1 GGCAG
67660123 GAAGGTGGCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.37, C:0.18, G:0.33, T:0.12
Consensus pattern (22 bp):
GGCAGAGTAGTGCCACATAAGA
Found at i:67660717 original size:27 final size:26
Alignment explanation
Indices: 67660687--67660737 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
67660677 GGATACTTTA
* *
67660687 GTTTACCAAGTTACTGAAATACCCTTG
1 GTTTACAAAATTACTG-AATACCCTTG
*
67660714 GTTTACAAAATTATTGAATACCCT
1 GTTTACAAAATTACTGAATACCCT
67660738 CGATTAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (26 bp):
GTTTACAAAATTACTGAATACCCTTG
Found at i:67660776 original size:27 final size:27
Alignment explanation
Indices: 67660746--67660834 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
67660736 CTCGATTAGA
* * *
67660746 AAAATTCCCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAAGACCCCTGATTTGT
67660773 AAAATTACCAAAAGACCCCTGATTTGT
1 AAAATTACCAAAAGACCCCTGATTTGT
* ** * *
67660800 GAAATTACTGAAATA-CCCTCGACTTGT
1 AAAATTACCAAAAGACCCCT-GATTTGT
67660827 AAAATTAC
1 AAAATTAC
67660835 TAAAGTACCC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.08
27 48 0.92
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAAGACCCCTGATTTGT
Found at i:67660835 original size:27 final size:26
Alignment explanation
Indices: 67660756--67660845 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 26
67660746 AAAATTCCCA
** *
67660756 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCCTGACTTGTAAAATTA-CT
* * *
67660783 AAAGACCCCTGATTTGTGAAATTACT
1 AAATACCCCTGACTTGTAAAATTACT
67660809 GAAATA-CCCTCGACTTGTAAAATTACT
1 -AAATACCCCT-GACTTGTAAAATTACT
67660836 AAAGTACCCC
1 AAA-TACCCC
67660846 CAATTTACAG
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
26 8 0.15
27 41 0.79
28 3 0.06
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (26 bp):
AAATACCCCTGACTTGTAAAATTACT
Found at i:67660921 original size:27 final size:27
Alignment explanation
Indices: 67660889--67661023 Score: 139
Period size: 27 Copynumber: 5.0 Consensus size: 27
67660879 ACAAAATGAT
67660889 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67660916 TTAAATACCCCTGTAAGGTAGAATTA-
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * * *
67660942 TCGTAATACCCTTGTAGAGTAGAAATA-
1 T-GAAATACCCCTGTAGGGTAGAATTAC
67660969 TCGAAATACCCCTGTAGGGTAGAATTAC
1 T-GAAATACCCCTGTAGGGTAGAATTAC
* * * * *
67660997 CGAGATACCCTTGTGGGGTAAAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
67661024 CATTTTGCCC
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 88 0.99
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
TGAAATACCCCTGTAGGGTAGAATTAC
Found at i:67660950 original size:54 final size:54
Alignment explanation
Indices: 67660892--67661023 Score: 160
Period size: 54 Copynumber: 2.4 Consensus size: 54
67660882 AAATGATTGA
* * *
67660892 AATACCCCTGTAGGGTAGAATTACT-TAAATACCCCTGTAAGGTAGAATTATCG
1 AATACCCTTGTAGGGTAGAATTACTCGAAATACCCCTGTAAGGTAGAATTACCG
* * *
67660945 TAATACCCTTGTAGAGTAGAAATA-TCGAAATACCCCTGTAGGGTAGAATTACCG
1 -AATACCCTTGTAGGGTAGAATTACTCGAAATACCCCTGTAAGGTAGAATTACCG
* *
67660999 AGATACCCTTGTGGGGTAAAATTAC
1 A-ATACCCTTGTAGGGTAGAATTAC
67661024 CATTTTGCCC
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
53 2 0.03
54 63 0.97
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
AATACCCTTGTAGGGTAGAATTACTCGAAATACCCCTGTAAGGTAGAATTACCG
Found at i:67661542 original size:29 final size:30
Alignment explanation
Indices: 67661469--67661550 Score: 98
Period size: 29 Copynumber: 2.7 Consensus size: 30
67661459 CGTTTATAGT
*
67661469 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTAATGA
*
67661500 AAAGGCTTCAGCCCAGTA-ATCG-TTAAATG-
1 AAAGGCTTCGGCCCAGTATAT-GATT-AATGA
67661529 AAAGGCTTCGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
67661551 TCGAGAATGA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
29 22 0.49
30 7 0.16
31 16 0.36
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGATTAATGA
Found at i:67663856 original size:20 final size:20
Alignment explanation
Indices: 67663827--67663871 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
67663817 AGCACATGCA
* *
67663827 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAAATT
*
67663847 TTCATCAAATTTTACAAATT
1 TTCATAAAATTTTACAAATT
67663867 TTCAT
1 TTCAT
67663872 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATT
Found at i:67667095 original size:39 final size:39
Alignment explanation
Indices: 67667035--67667118 Score: 132
Period size: 39 Copynumber: 2.2 Consensus size: 39
67667025 ATCAATGACT
* *
67667035 AAACAAATTCTAGATAGACTTACAAACGGATTGCACAAA
1 AAACAAATTCTAGACAGACTTACAAACAGATTGCACAAA
* *
67667074 AAACAAATTCTAGACATACTTACAAATAGATTGCACAAA
1 AAACAAATTCTAGACAGACTTACAAACAGATTGCACAAA
67667113 AAACAA
1 AAACAA
67667119 TTTGATCACT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.52, C:0.18, G:0.10, T:0.20
Consensus pattern (39 bp):
AAACAAATTCTAGACAGACTTACAAACAGATTGCACAAA
Found at i:67678033 original size:93 final size:93
Alignment explanation
Indices: 67677920--67678091 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67677910 CGCCCATAAG
* *
67677920 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67677985 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
67678013 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67678078 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
67678092 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67678088 original size:46 final size:46
Alignment explanation
Indices: 67677913--67678088 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67677903 TGTAACCCGC
* * *
67677913 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
67677959 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
67678009 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67678052 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
67678089 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67685536 original size:93 final size:90
Alignment explanation
Indices: 67685423--67685677 Score: 398
Period size: 83 Copynumber: 2.8 Consensus size: 90
67685413 CGCCCATAAG
67685423 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAG-TC-GGC-TTCGCATCCATAAGTGAACTCGGACTCAACTCA
67685488 ACGAGTTCGGATGCCTAGTTACATCTCA
63 ACGAGTTCGGATGCCTAGTTACATCTCA
67685516 CGAACTCGGACTCAACTCAACGA-------TCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 CGAACTCGGACTCAACTCAACGAGTCGGCTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
67685574 AGTTCGGATGCCTAGTTACATCTCA
66 AGTTCGGATGCCTAGTTACATCTCA
67685599 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAG-TCGG-C-TTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67685664 ACGAGTTCGAATGC
63 ACGAGTTCGGATGC
67685678 TCAACCATCC
Statistics
Matches: 151, Mismatches: 1, Indels: 20
0.88 0.01 0.12
Matches are distributed among these distances:
83 83 0.55
93 68 0.45
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (90 bp):
CGAACTCGGACTCAACTCAACGAGTCGGCTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCA
Found at i:67685538 original size:47 final size:47
Alignment explanation
Indices: 67685470--67685628 Score: 223
Period size: 47 Copynumber: 3.6 Consensus size: 47
67685460 ATCCATAAGT
67685470 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
67685517 GAACTCGGACTCAACTCAACGA--TCGCAT-CC-A--TA-A-GT---
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
67685553 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
67685600 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
67685629 CATTCGCATC
Statistics
Matches: 97, Mismatches: 4, Indels: 22
0.79 0.03 0.18
Matches are distributed among these distances:
36 22 0.23
38 5 0.05
39 3 0.03
40 2 0.02
41 2 0.02
42 2 0.02
43 2 0.02
44 3 0.03
45 5 0.05
47 51 0.53
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67685669 original size:46 final size:49
Alignment explanation
Indices: 67685539--67685672 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 49
67685529 AACTCAACGA
67685539 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT
1 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGT
* * *
67685590 T-ACAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-T
1 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGT
67685632 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
67685673 AATGCTCAAC
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 2 0.03
45 2 0.03
46 27 0.37
47 29 0.40
48 2 0.03
49 1 0.01
50 3 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (49 bp):
TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGT
Found at i:67685693 original size:46 final size:44
Alignment explanation
Indices: 67685550--67685693 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
67685540 CGCATCCATA
*
67685550 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCC-A---ACCATCT
* * * *
67685597 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTC-GA-ATGC-CAACCATCT
67685643 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGC-CAACCAT-CT
67685689 AGTGA
1 AGTGA
67685694 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 3 0.04
46 31 0.39
47 29 0.37
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCAACCATCT
Found at i:67686130 original size:30 final size:30
Alignment explanation
Indices: 67686096--67686155 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67686086 ATTTAATACG
67686096 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67686126 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67686156 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67691518 original size:37 final size:37
Alignment explanation
Indices: 67691459--67691570 Score: 188
Period size: 37 Copynumber: 3.0 Consensus size: 37
67691449 AGCTCAGATG
67691459 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
* *
67691496 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
*
67691533 AAATCTCCACACGAAGTTATCGGGTCTTAACCCAGACA
1 AAATCTCCACACGAAGTTATCGGGTCTT-ACCCGGACA
67691571 TAGTCACCAC
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 61 0.88
38 8 0.12
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.21
Consensus pattern (37 bp):
AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
Found at i:67691806 original size:46 final size:46
Alignment explanation
Indices: 67691753--67691889 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
67691743 TATATATACA
* * * *
67691753 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
67691799 CATCTCATACACGTTTCGCACTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
67691845 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
67691890 ATACATGTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:67691924 original size:47 final size:47
Alignment explanation
Indices: 67691863--67692292 Score: 608
Period size: 47 Copynumber: 9.1 Consensus size: 47
67691853 ACACATTTCG
* * * ** *
67691863 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
67691910 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
67691957 CATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
67692004 CATTGGCCATTCAGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
67692051 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
67692098 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
67692145 CATTGGCCATTCGGCCTTATCTCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
67692192 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
* * * ** **
67692243 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
67692290 CAT
1 CAT
67692293 AAAATCCTAA
Statistics
Matches: 357, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 315 0.88
49 2 0.01
51 40 0.11
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:67692146 original size:25 final size:25
Alignment explanation
Indices: 67691975--67692052 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
67691965 ATTCAGCCTT
67691975 ATCACACATACGCATGTTCACATTC
1 ATCACACATACGCATGTTCACATTC
** *
67692000 AT--CACATTGGCCA--TTCAGCCTT-
1 ATCACACATACG-CATGTTCA-CATTC
*
67692022 ATCACACATACACATGTTCACATTC
1 ATCACACATACGCATGTTCACATTC
67692047 ATCACA
1 ATCACA
67692053 TTGGCCATTC
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 10 0.26
25 12 0.31
ACGTcount: A:0.32, C:0.32, G:0.08, T:0.28
Consensus pattern (25 bp):
ATCACACATACGCATGTTCACATTC
Found at i:67697023 original size:27 final size:26
Alignment explanation
Indices: 67696983--67697042 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
67696973 ACATATATAT
* *
67696983 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
67697009 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
67697036 ATATCTG
1 ATATCTG
67697043 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:67699192 original size:17 final size:16
Alignment explanation
Indices: 67699170--67699210 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 16
67699160 AATAAATATA
67699170 TTTTTTTTTCAATTTTCT
1 TTTTTTTTTC--TTTTCT
67699188 TTTTTTTTTCTTTTCT
1 TTTTTTTTTCTTTTCT
67699204 TTTTTTT
1 TTTTTTT
67699211 GTACAAGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.57
18 10 0.43
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTTTTTCTTTTCT
Found at i:67700197 original size:6 final size:6
Alignment explanation
Indices: 67700189--67700252 Score: 110
Period size: 6 Copynumber: 10.7 Consensus size: 6
67700179 AAAAACAACT
* *
67700189 AAAAAT AAAAAT AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
67700237 AAAAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAAA
67700253 CAAATTAACT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 57 1.00
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:67701670 original size:56 final size:58
Alignment explanation
Indices: 67701536--67701690 Score: 165
Period size: 56 Copynumber: 2.7 Consensus size: 58
67701526 TCTTGACCTT
* ** * * *
67701536 GTTATATAAAGGATTTAGCTTGGACAAGTAATCCTAATATAATTCTTCTCGAGTATAC
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAACTCTTCTCAAGCATAC
* * *
67701594 GTTACGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TAAGCTCTT-T-AAGCATAC
1 GTTA-TATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAA-CTCTTCTCAAGCATAC
* *
67701650 GTTATATAAAGGATTTAGCCTGGACTGGTAGTCCTATTATA
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATA
67701691 CGATATGTGA
Statistics
Matches: 79, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
55 2 0.03
56 36 0.46
57 6 0.08
58 33 0.42
59 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAACTCTTCTCAAGCATAC
Found at i:67704098 original size:13 final size:13
Alignment explanation
Indices: 67704080--67704105 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67704070 TTTTCGTCCA
67704080 CTATATTCTGTCG
1 CTATATTCTGTCG
67704093 CTATATTCTGTCG
1 CTATATTCTGTCG
67704106 ACTTTGCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
CTATATTCTGTCG
Found at i:67707170 original size:33 final size:33
Alignment explanation
Indices: 67707118--67707189 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
67707108 TCAGTAGCAA
* *
67707118 TATCAATGTGGGCCTTAGCCC-ATTATGGTATCAG
1 TATCAGTGTGGGCCTTAGCCCAATT-TAGTA-CAG
67707152 TATCAGTGT-GGCCTTAGCCCAATTTAGTACAG
1 TATCAGTGTGGGCCTTAGCCCAATTTAGTACAG
67707184 TATCAG
1 TATCAG
67707190 AGATGCAAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 9 0.26
33 15 0.43
34 11 0.31
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (33 bp):
TATCAGTGTGGGCCTTAGCCCAATTTAGTACAG
Found at i:67709818 original size:62 final size:61
Alignment explanation
Indices: 67709714--67709851 Score: 181
Period size: 62 Copynumber: 2.2 Consensus size: 61
67709704 GAGAAATATG
* *
67709714 GCACTAAGTGTGCGAGGGATTAAGTGACGGCACTGAGTGTGCGATACGTCAC-AAGATTTTA
1 GCACTAAGTGTGCGAGGGATTAAGTAACGGCACTAAGTGTGCGATACGTCACAAAGA-TTTA
* *
67709775 GCACTAAGTGTGCGAGATG-TTAATGTAACGGCACTAAGTGTGCGATACGTTACAAAGATTTA
1 GCACTAAGTGTGCGAG-GGATTAA-GTAACGGCACTAAGTGTGCGATACGTCACAAAGATTTA
* *
67709837 GCATTGAGTGTGCGA
1 GCACTAAGTGTGCGA
67709852 TTTGGCTGAT
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
61 20 0.29
62 44 0.65
63 4 0.06
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (61 bp):
GCACTAAGTGTGCGAGGGATTAAGTAACGGCACTAAGTGTGCGATACGTCACAAAGATTTA
Found at i:67724535 original size:47 final size:47
Alignment explanation
Indices: 67724481--67725369 Score: 1474
Period size: 47 Copynumber: 18.8 Consensus size: 47
67724471 GGATAATTGT
* *
67724481 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
67724528 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
67724575 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67724622 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67724669 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67724716 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
67724765 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
67724811 GATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCT
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67724858 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCT
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67724905 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
67724954 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
67725001 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
*
67725050 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67725097 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67725144 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
*
67725193 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
67725240 GATGTGATGAATCTGAAAGTGTATATATGTGATGAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
67725287 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
67725334 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67725370 TCCCGAAGGG
Statistics
Matches: 793, Mismatches: 40, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
46 45 0.06
47 568 0.72
49 180 0.23
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:67724771 original size:96 final size:94
Alignment explanation
Indices: 67724481--67725369 Score: 1474
Period size: 96 Copynumber: 9.4 Consensus size: 94
67724471 GGATAATTGT
* *
67724481 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
67724546 GTGTATATATGTGATAAGGCCTAATGGCC
66 GTGTATATATGTGATAAGGCCTAATGGCC
67724575 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
67724640 GTGTATATATGTGATAAGGCCTAATAGCC
66 GTGTATATATGTGATAAGGCCTAATGGCC
* *
67724669 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
67724734 GTGTATATATATGTGATAAGGCCTAATGGCC
66 GTG--TATATATGTGATAAGGCCTAATGGCC
67724765 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
67724829 GTGTATATATGTGATGAGGCCTAATGGCT
66 GTGTATATATGTGATAAGGCCTAATGGCC
*
67724858 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
67724923 GTGTATATATATGTGATAAGACCTAATGGCC
66 GTG--TATATATGTGATAAGGCCTAATGGCC
67724954 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
67725019 GTGTATATATATGTGATAAGACCGAATGGCC
66 GTG--TATATATGTGATAAGGCCTAATGGCC
*
67725050 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
67725115 GTGTATATATGTGATAAGGCCGAATGGCC
66 GTGTATATATGTGATAAGGCCTAATGGCC
*
67725144 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
67725209 AAGTGTATATATGTGATAAGGCCTAATAGCC
64 AAGTGTATATATGTGATAAGGCCTAATGGCC
* *
67725240 GATGTGATGAATCTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * * *
67725305 GTGTATATATGTGACAGGGCCGAGTGGCC
66 GTGTATATATGTGATAAGGCCTAATGGCC
* * * *
67725334 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67725370 TCCCGAAGGG
Statistics
Matches: 752, Mismatches: 36, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
93 67 0.09
94 322 0.43
95 23 0.03
96 340 0.45
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATGGCC
Found at i:67724785 original size:143 final size:141
Alignment explanation
Indices: 67724481--67725369 Score: 1501
Period size: 143 Copynumber: 6.3 Consensus size: 141
67724471 GGATAATTGT
*
67724481 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
67724546 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67724611 GCCTAATGGCC
131 GCCTAATGGCC
67724622 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* *
67724687 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA
67724752 AGGCCTAATGGCC
129 AGGCCTAATGGCC
67724765 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* *
67724829 GTGTATATATGTGATGAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
67724894 GCCTAATGGCT
131 GCCTAATGGCC
* *
67724905 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
67724970 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
64 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
67725035 TAAGACCGAATGGCC
127 TAAGGCCTAATGGCC
67725050 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* *
67725115 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA
67725180 AGGCCTAATGGCC
129 AGGCCTAATGGCC
*
67725193 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATCTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* * *
67725258 GTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGG
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* *
67725323 GCCGAGTGGCC
131 GCCTAATGGCC
* * * *
67725334 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67725370 TCCCGAAGGG
Statistics
Matches: 709, Mismatches: 32, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
140 46 0.06
141 166 0.23
142 88 0.12
143 365 0.51
145 44 0.06
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (141 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCTAATGGCC
Found at i:67727547 original size:38 final size:38
Alignment explanation
Indices: 67727483--67727557 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
67727473 AATCCGAGTT
*
67727483 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
67727521 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
67727558 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:67727669 original size:40 final size:40
Alignment explanation
Indices: 67727610--67727954 Score: 527
Period size: 40 Copynumber: 8.7 Consensus size: 40
67727600 AGGTCTCGAC
67727610 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67727649 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
67727689 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67727729 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67727769 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
67727809 GA--TATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
67727846 GATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
67727886 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
67727926 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
67727955 ATCATGCTGG
Statistics
Matches: 287, Mismatches: 15, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
37 23 0.08
38 14 0.05
39 18 0.06
40 232 0.81
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:67731499 original size:47 final size:47
Alignment explanation
Indices: 67731445--67732479 Score: 1665
Period size: 47 Copynumber: 21.8 Consensus size: 47
67731435 GGATAATTGT
* *
67731445 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
67731492 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67731539 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
*
67731588 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67731635 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
67731682 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
*
67731731 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67731778 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67731825 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * *
67731872 GATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATAGCT
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67731919 GATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
67731966 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCT
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
*
67732015 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
67732064 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
67732111 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
* *
67732160 GATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATAGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67732207 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
67732254 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGGCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
* *
67732303 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
67732350 GATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
67732397 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
67732444 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67732480 TCCCGAAGGG
Statistics
Matches: 924, Mismatches: 54, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
47 651 0.70
49 273 0.30
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:67731589 original size:96 final size:94
Alignment explanation
Indices: 67731445--67732479 Score: 1665
Period size: 96 Copynumber: 10.9 Consensus size: 94
67731435 GGATAATTGT
* *
67731445 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
67731510 GTGTATATATGTGATAAGGCCTAATGGCC
66 GTGTATATATGTGATAAGGCCTAATGGCC
*
67731539 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
67731604 AAGTGTATATATGTGATAAGGCCTAATAGCC
64 AAGTGTATATATGTGATAAGGCCTAATGGCC
* *
67731635 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
67731700 GTGTATATATATGTGATAAGACCTAATGGCC
66 GTG--TATATATGTGATAAGGCCTAATGGCC
*
67731731 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
67731796 GTGTATATATGTGATAAGGCCGAATGGCC
66 GTGTATATATGTGATAAGGCCTAATGGCC
*
67731825 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * *
67731890 GTGTATATATGTGATGAGGCCTAATAGCT
66 GTGTATATATGTGATAAGGCCTAATGGCC
*
67731919 GATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
67731984 GTGTATATATATGTGATAAGACCTAATGGCT
66 GTG--TATATATGTGATAAGGCCTAATGGCC
*
67732015 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
67732080 AAGTGTATATATGTGATAAGGCCTAATGGCC
64 AAGTGTATATATGTGATAAGGCCTAATGGCC
67732111 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
67732176 AAGTGTGTATATGTGATAAGGCCTAATAGCC
64 AAGTGTATATATGTGATAAGGCCTAATGGCC
* *
67732207 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
67732272 GTGTATATATATGTGATAAGGGCTAATGGCC
66 GTG--TATATATGTGATAAGGCCTAATGGCC
* *
67732303 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
67732368 GTGTATATATGTGATGAGGCCTAATGGCC
66 GTGTATATATGTGATAAGGCCTAATGGCC
* * * * * * *
67732397 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
67732462 GTGTATAAATGTGATAAG
66 GTGTATATATGTGATAAG
67732480 TCCCGAAGGG
Statistics
Matches: 877, Mismatches: 54, Indels: 20
0.92 0.06 0.02
Matches are distributed among these distances:
94 383 0.44
96 449 0.51
98 45 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATGGCC
Found at i:67731606 original size:143 final size:143
Alignment explanation
Indices: 67731445--67732479 Score: 1772
Period size: 143 Copynumber: 7.3 Consensus size: 143
67731435 GGATAATTGT
*
67731445 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
67731510 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
*
67731575 AGACCTAATGGCC
131 AGGCCTAATGGCC
67731588 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* *
67731653 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
*
67731718 AGACCTAATGGCC
131 AGGCCTAATGGCC
67731731 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* *
67731796 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATA
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
67731859 AGGCCTAATGGCC
131 AGGCCTAATGGCC
* *
67731872 GATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATAGCTGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
*
67731937 GTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
* *
67732002 AGACCTAATGGCT
131 AGGCCTAATGGCC
* *
67732015 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
67732080 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
64 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
67732145 TAAGGCCTAATGGCC
129 TAAGGCCTAATGGCC
*
67732160 GATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* *
67732225 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
*
67732290 AGGGCTAATGGCC
131 AGGCCTAATGGCC
*
67732303 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* *
67732368 GTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACA
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
* * *
67732431 GGGCCGAGTGGCC
131 AGGCCTAATGGCC
* * * *
67732444 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67732480 TCCCGAAGGG
Statistics
Matches: 850, Mismatches: 38, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
141 188 0.22
143 526 0.62
145 136 0.16
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
AGGCCTAATGGCC
Found at i:67734799 original size:21 final size:21
Alignment explanation
Indices: 67734775--67734815 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
67734765 TGGAAAACTC
67734775 ACACGACCGTGTGGCTAAGGA
1 ACACGACCGTGTGGCTAAGGA
* *
67734796 ACACGGCCGTGTGTCTAAGG
1 ACACGACCGTGTGGCTAAGG
67734816 CACATTCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.17
Consensus pattern (21 bp):
ACACGACCGTGTGGCTAAGGA
Found at i:67738230 original size:49 final size:50
Alignment explanation
Indices: 67738172--67738306 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 50
67738162 ATCTAGTATG
* *
67738172 CATAGTAGCCTGCACTTAGTATTACACATGCGACCA-ATTATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCATATTATCAGATACA
* * * * * * * *
67738221 CGTAGTAGCCTGCACTTTGTACTACACACGTGATCGATGTTATCAGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CCATATTATCAGATACA
67738272 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
67738307 TCACAATAGA
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
49 28 0.41
50 3 0.04
51 38 0.55
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCATATTATCAGATACA
Found at i:67749029 original size:12 final size:12
Alignment explanation
Indices: 67748998--67749038 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
67748988 AAATAAAGCA
*
67748998 AGAAACGAAATAG
1 AGAAA-GAAAAAG
67749011 A-AAAGAAAAAG
1 AGAAAGAAAAAG
67749022 AGAAAGAAAAAG
1 AGAAAGAAAAAG
67749034 AGAAA
1 AGAAA
67749039 AGCTAGAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 7 0.27
12 18 0.69
13 1 0.04
ACGTcount: A:0.73, C:0.02, G:0.22, T:0.02
Consensus pattern (12 bp):
AGAAAGAAAAAG
Found at i:67760011 original size:47 final size:47
Alignment explanation
Indices: 67759960--67760661 Score: 1072
Period size: 47 Copynumber: 14.7 Consensus size: 47
67759950 TTAGGATTCT
* *
67759960 ATGTGATCG-ATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGAT-GAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
67760007 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
67760054 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
67760103 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
67760150 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* ** * * *
67760197 ATGTGATGAATGTGAAAGTGTATATATGTGTATATGTGATTTA-GGATTCT
1 ATGTGATGAATGTGAAAGTGTATATATGTG-ATAAG-GCCTAATGG--CCG
* * *
67760247 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
67760294 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
67760341 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
67760388 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
67760437 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
67760486 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
67760533 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
67760580 ATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCG
* * *
67760627 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67760662 TCCCGAAGGG
Statistics
Matches: 610, Mismatches: 30, Indels: 29
0.91 0.04 0.04
Matches are distributed among these distances:
46 8 0.01
47 412 0.68
48 11 0.02
49 152 0.25
50 26 0.04
51 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:67760136 original size:143 final size:143
Alignment explanation
Indices: 67759960--67760661 Score: 1050
Period size: 143 Copynumber: 4.9 Consensus size: 143
67759950 TTAGGATTCT
* *
67759960 ATGTGATCG-ATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGAT-GAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67760023 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
67760088 AAGGCCTAATGGCCG
129 AAGGCCTAATGGCCG
67760103 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
67760168 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGT-ATAT
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
** * * *
67760232 GTGATTTA-GGATTCT
131 G-GCCTAATGG--CCG
* * *
67760247 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
67760311 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
67760374 AGGCCTAATGGCCG
130 AGGCCTAATGGCCG
67760388 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67760453 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
67760516 ATAAGGCCTAATGGCCG
127 ATAAGGCCTAATGGCCG
*
67760533 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * *
67760598 TGTATATATGTGA-CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATA
66 TGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
67760660 AG
130 AG
67760662 TCCCGAAGGG
Statistics
Matches: 514, Mismatches: 29, Indels: 34
0.89 0.05 0.06
Matches are distributed among these distances:
140 6 0.01
141 63 0.12
142 20 0.04
143 221 0.43
144 110 0.21
145 94 0.18
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCG
Found at i:67760322 original size:25 final size:25
Alignment explanation
Indices: 67760294--67760372 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
67760284 CTAATGGCCG
67760294 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
67760319 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
67760341 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
67760366 ATGTGAT
1 ATGTGAT
67760373 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:67760836 original size:37 final size:37
Alignment explanation
Indices: 67760780--67760858 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67760770 CCGAGCTCTA
* * *
67760780 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67760817 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67760854 AAGAC
1 AAGAC
67760859 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67762112 original size:44 final size:46
Alignment explanation
Indices: 67762059--67762167 Score: 134
Period size: 46 Copynumber: 2.4 Consensus size: 46
67762049 CATGTCCCGG
*
67762059 ACATGGTCTTACACTAGCTTA-A-CTCGTA-GCCGATGCATGCCCCAA
1 ACAT-GTCTTACACTAGCTTACATCTC-AAGGCCGATGCATGCCCCAA
* * * *
67762104 ACATGTCTTACACTGGCTTACATTTCAAGGCTGATGCATGTCCCAA
1 ACATGTCTTACACTAGCTTACATCTCAAGGCCGATGCATGCCCCAA
67762150 ACATGTCTTACACTAGCT
1 ACATGTCTTACACTAGCT
67762168 CTCGTCTCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
44 15 0.27
45 6 0.11
46 34 0.62
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (46 bp):
ACATGTCTTACACTAGCTTACATCTCAAGGCCGATGCATGCCCCAA
Found at i:67768959 original size:50 final size:50
Alignment explanation
Indices: 67768844--67768971 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
67768834 CAAGTTGATG
*
67768844 CCATGTCCCAAACATGGTCTTACACTGACTATCAAAATCGAGGCTGACAT
1 CCATGTCCCAAACATGGTCTTACACTGACTATCAAAATCGAGGCCGACAT
* * * * *
67768894 -CATGTCCCAAGCATGGTCTTACACT-AGCTCTCACATATCCG-TGCCGA-TT
1 CCATGTCCCAAACATGGTCTTACACTGA-CTATCA-AAAT-CGAGGCCGACAT
67768943 CCATGTCCCAAACATGGTCTTACACTGAC
1 CCATGTCCCAAACATGGTCTTACACTGAC
67768972 ACATCTCGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
48 1 0.02
49 30 0.45
50 32 0.48
51 3 0.05
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAAACATGGTCTTACACTGACTATCAAAATCGAGGCCGACAT
Found at i:67768995 original size:45 final size:45
Alignment explanation
Indices: 67768840--67769152 Score: 154
Period size: 46 Copynumber: 6.6 Consensus size: 45
67768830 CCATCAAGTT
** *
67768840 GATGCCATGTCCCAAACATGGTCTTACACTGACTATCAAAATCGAGGCT
1 GATG-CATGTCCCAAACAT-GTCTTACACTGACTA-C-ATCTCGAGGCC
* * * *
67768889 GACAT-CATGTCCCAAGCATGGTCTTACACTAGCTCTCACATATCCG-TGCC
1 G--ATGCATGTCCCAAACAT-GTCTTACACT-G-ACT-ACATCT-CGAGGCC
* *
67768939 GATTCCATGTCCCAAACATGGTCTTACACTGAC-ACATCTCGTA-GTC
1 GA-TGCATGTCCCAAACAT-GTCTTACACTGACTACATCTCG-AGGCC
* * * *
67768985 GATGCATGTCCCAGACATGTCTTACATTGCCTTACGTCTCGAGGCC
1 GATGCATGTCCCAAACATGTCTTACACTGAC-TACATCTCGAGGCC
** * * * * *
67769031 GATGCACATCCCAAACATGTCTTACACT-AGCTCTCGTCTCAATGCT
1 GATGCATGTCCCAAACATGTCTTACACTGA-CT-ACATCTCGAGGCC
* * * *
67769077 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-CTAATAAT-GTGGCC
1 GATG-CATGTCCCAAACAT-GTCTTACACTGACTAC--AT-CTCGAGGCC
*
67769125 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAAACATGTCTTACACT
67769153 AGCACACAAA
Statistics
Matches: 209, Mismatches: 34, Indels: 45
0.73 0.12 0.16
Matches are distributed among these distances:
44 11 0.05
45 18 0.09
46 67 0.32
47 25 0.12
48 21 0.10
49 28 0.13
50 31 0.15
51 7 0.03
52 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTGACTACATCTCGAGGCC
Found at i:67773352 original size:15 final size:16
Alignment explanation
Indices: 67773325--67773355 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
67773315 TTAAGCTAAA
67773325 GAAAGTAAATGAAATG
1 GAAAGTAAATGAAATG
67773341 GAAAGT-AATGAAATG
1 GAAAGTAAATGAAATG
67773356 CAAATGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.19
Consensus pattern (16 bp):
GAAAGTAAATGAAATG
Found at i:67782251 original size:35 final size:35
Alignment explanation
Indices: 67782212--67782278 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
67782202 GATATAGAAA
*
67782212 TATATCTATCAAATTAGTTATAATAGGGAAATTTC
1 TATATCTATCAAATCAGTTATAATAGGGAAATTTC
*
67782247 TATATCTATCAAATCAGTTATAATCGGGAAAT
1 TATATCTATCAAATCAGTTATAATAGGGAAAT
67782279 GTCATTATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.37
Consensus pattern (35 bp):
TATATCTATCAAATCAGTTATAATAGGGAAATTTC
Found at i:67787768 original size:43 final size:43
Alignment explanation
Indices: 67787674--67787771 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
67787664 CCGAGATGTG
* * * *
67787674 ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTCTG
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTATA
*
67787717 ATTACGTGTAAGACCATGTTTGGGACATTGGCATCGT-TATATA
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT-TATA
*
67787760 ATTTCGTGTAAG
1 ATTACGTGTAAG
67787772 TCTCTGTCTA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 1 0.02
43 47 0.98
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTATA
Found at i:67791090 original size:29 final size:31
Alignment explanation
Indices: 67791056--67791113 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
67791046 TTTTTTTGAG
*
67791056 TTAAATTTGTCC-TC-ATCCTTTTAAAAAAA
1 TTAAATTTGACCATCAATCCTTTTAAAAAAA
*
67791085 TTAAATTTGACCATCAATCTTTTTAAAAA
1 TTAAATTTGACCATCAATCCTTTTAAAAA
67791114 GAGTCAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 11 0.44
30 2 0.08
31 12 0.48
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.41
Consensus pattern (31 bp):
TTAAATTTGACCATCAATCCTTTTAAAAAAA
Found at i:67791208 original size:3 final size:3
Alignment explanation
Indices: 67791200--67791264 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
67791190 TCACATGTAA
67791200 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
67791248 TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TT
67791265 GCCATACCAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:67791407 original size:7 final size:7
Alignment explanation
Indices: 67791397--67791428 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
67791387 CAAAAAATAA
67791397 AAATGTT
1 AAATGTT
67791404 AAATGTT
1 AAATGTT
67791411 AAATGTT
1 AAATGTT
*
67791418 AAATGTA
1 AAATGTT
67791425 AAAT
1 AAAT
67791429 TTATCAGATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (7 bp):
AAATGTT
Found at i:67798820 original size:46 final size:46
Alignment explanation
Indices: 67798753--67798922 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
67798743 TGTAACCCGC
67798753 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
67798799 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* *** * **
67798845 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
67798892 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
67798923 TTCAGATGCC
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 62 0.60
47 30 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:67798873 original size:93 final size:93
Alignment explanation
Indices: 67798761--67798932 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67798751 GCCCATAAGT
**
67798761 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67798826 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
*
67798854 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67798919 CGAGTTCAGATGCC
66 CGAGCTCAGATGCC
67798933 CAAATATCAT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:67802065 original size:16 final size:16
Alignment explanation
Indices: 67802044--67802098 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
67802034 GTTTGGTTCA
*
67802044 CTATAATGGAATAGGG
1 CTATAATGGAATAGAG
*
67802060 CTATAATTGAATAGAG
1 CTATAATGGAATAGAG
* *
67802076 CTGTAATGGAAGAGAG
1 CTATAATGGAATAGAG
67802092 CTATAAT
1 CTATAAT
67802099 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.27
Consensus pattern (16 bp):
CTATAATGGAATAGAG
Found at i:67802303 original size:14 final size:14
Alignment explanation
Indices: 67802267--67802307 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
67802257 GTTATTAAAT
*
67802267 TTTAAT-AAAATTA
1 TTTAATAAAAATAA
*
67802280 -TTATTAAAAATAA
1 TTTAATAAAAATAA
67802293 TTTAATAAAAATAA
1 TTTAATAAAAATAA
67802307 T
1 T
67802308 AAATAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 4 0.17
13 6 0.26
14 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAATAAAAATAA
Found at i:67802356 original size:58 final size:57
Alignment explanation
Indices: 67802263--67802401 Score: 188
Period size: 58 Copynumber: 2.4 Consensus size: 57
67802253 TATTGTTATT
* *
67802263 AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACC
1 AAATTTTAATATAATTATTATTAAAAATAACTTAAT-AAAATAATAAATAATTTAACC
* * * * **
67802321 ATATTTTAACATAATTATTATTAAATATAACTTAATAAAATAATATATAATTTAATG
1 AAATTTTAATATAATTATTATTAAAAATAACTTAATAAAATAATAAATAATTTAACC
67802378 AAATTCTTAATATAATTATTATTA
1 AAATT-TTAATATAATTATTATTA
67802402 TATAAATTAA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
57 22 0.31
58 48 0.69
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (57 bp):
AAATTTTAATATAATTATTATTAAAAATAACTTAATAAAATAATAAATAATTTAACC
Found at i:67813847 original size:35 final size:35
Alignment explanation
Indices: 67813801--67813868 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
67813791 ACATAGCTAC
67813801 ACGGTGCTGCTCACACAAGCTGTCAAGTAACCGAT
1 ACGGTGCTGCTCACACAAGCTGTCAAGTAACCGAT
67813836 ACGGTGCTGCTCACACAAGCTGTCAAGTAACCG
1 ACGGTGCTGCTCACACAAGCTGTCAAGTAACCG
67813869 CAACATATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (35 bp):
ACGGTGCTGCTCACACAAGCTGTCAAGTAACCGAT
Found at i:67822366 original size:29 final size:29
Alignment explanation
Indices: 67822324--67822391 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
67822314 ATTGACGGGT
*
67822324 GAAATGGGATAGCTTCGACTATCGACTAC
1 GAAAAGGGATAGCTTCGACTATCGACTAC
* * * *
67822353 GAAAAGGGATAGCTTTGGCTATCGATTAT
1 GAAAAGGGATAGCTTCGACTATCGACTAC
67822382 GAAAAGGGAT
1 GAAAAGGGAT
67822392 GGTGACGACC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (29 bp):
GAAAAGGGATAGCTTCGACTATCGACTAC
Found at i:67822410 original size:29 final size:29
Alignment explanation
Indices: 67822377--67822539 Score: 166
Period size: 30 Copynumber: 5.5 Consensus size: 29
67822367 TTGGCTATCG
67822377 ATTATGAAAAGGGATGGTGACGACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
* * * *
67822406 GTTATGGAATGGGATGGTGACAACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
* * * * *
67822435 GTTACGGAATGGGATGGTGACGACCATTGA
1 ATTATGAAAAGGGATGGTGACGACCA-TCA
* **
67822465 ATTATGAAAAGGGATGGCT-TCGATTATCAA
1 ATTATGAAAAGGGATGG-TGACGACCATC-A
*
67822495 ATTATGAAAAGGGATGGTGACAACCATCAA
1 ATTATGAAAAGGGATGGTGACGACCATC-A
67822525 ATTATGAAAAGGGAT
1 ATTATGAAAAGGGAT
67822540 AGCTTTGGCT
Statistics
Matches: 111, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
29 51 0.46
30 59 0.53
31 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (29 bp):
ATTATGAAAAGGGATGGTGACGACCATCA
Found at i:67822521 original size:60 final size:60
Alignment explanation
Indices: 67822353--67822569 Score: 181
Period size: 60 Copynumber: 3.7 Consensus size: 60
67822343 TATCGACTAC
* * * * *
67822353 GAAAAGGGATAGCTTTGGCTATC-GATTATGAAAAGGGATGGTGACGACCATC-AGTTAT
1 GAAAAGGGATAGCTTCGACTATCAAATTATGAAAAGGGATGGTGACAACCATCAAATTAT
* * * * * * * * * * * **
67822411 GGAATGGGAT-GGTGACAACCATC-AGTTACGGAATGGGATGGTGACGACCATTGAATTAT
1 GAAAAGGGATAGCT-TCGACTATCAAATTATGAAAAGGGATGGTGACAACCATCAAATTAT
* *
67822470 GAAAAGGGATGGCTTCGATTATCAAATTATGAAAAGGGATGGTGACAACCATCAAATTAT
1 GAAAAGGGATAGCTTCGACTATCAAATTATGAAAAGGGATGGTGACAACCATCAAATTAT
* * **
67822530 GAAAAGGGATAGCTTTGGCTATTGAATTATGAAAAGGGAT
1 GAAAAGGGATAGCTTCGACTATCAAATTATGAAAAGGGAT
67822570 ACCCTCGGCT
Statistics
Matches: 120, Mismatches: 35, Indels: 6
0.75 0.22 0.04
Matches are distributed among these distances:
57 2 0.02
58 35 0.29
59 18 0.15
60 65 0.54
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (60 bp):
GAAAAGGGATAGCTTCGACTATCAAATTATGAAAAGGGATGGTGACAACCATCAAATTAT
Found at i:67822558 original size:30 final size:30
Alignment explanation
Indices: 67822524--67822601 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 30
67822514 ACAACCATCA
* * * *
67822524 AATTATGAAAAGGGATAGCTTTGGCTATTG
1 AATTATGAAAAGGGATACCCTCGGCTATCG
67822554 AATTATGAAAAGGGATACCCTCGGCTATCG
1 AATTATGAAAAGGGATACCCTCGGCTATCG
* *
67822584 AATAAAGAAAAGGGATAC
1 AATTATGAAAAGGGATAC
67822602 GTCAAACATC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (30 bp):
AATTATGAAAAGGGATACCCTCGGCTATCG
Found at i:67827943 original size:47 final size:47
Alignment explanation
Indices: 67827765--67828217 Score: 699
Period size: 47 Copynumber: 9.5 Consensus size: 47
67827755 GTGTGTATAC
67827765 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
67827814 GTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
67827863 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
67827912 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
67827959 GTGAAGGTGTATATATATGGTAAGGCCTAATGGCCGAAGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
67828006 GCGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
67828053 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
67828100 GTTAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * *
67828147 GTGAAAGTGTATATATGTGACAGGGCCGAGTCGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
67828194 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
67828218 TCCCGAAGGG
Statistics
Matches: 377, Mismatches: 27, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
47 272 0.72
49 105 0.28
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:67828405 original size:37 final size:37
Alignment explanation
Indices: 67828336--67828414 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
67828326 CCGAGCTCTA
* * *
67828336 AAGACCCGATGACTACGCGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
* *
67828373 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
67828410 AAGAC
1 AAGAC
67828415 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
Found at i:67833689 original size:35 final size:35
Alignment explanation
Indices: 67833650--67833869 Score: 271
Period size: 35 Copynumber: 6.3 Consensus size: 35
67833640 ATCCAACTAT
* * *
67833650 AACACGCCGATACTCATAAGAGCTAACCCAACCGA
1 AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
*
67833685 AACACGCCAATGCTCATAAGAGCTAATCTAACC-A
1 AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
* * *
67833719 TAACATGCTAATGCTCATAAGAGCTAATCCAACCGT
1 -AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
* * * *
67833755 AACACGACAATGCTCATAAGAGCTAATCTAACTGT
1 AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
* * *
67833790 AACATGCCAATGCTCATAAGAGCTAATCAAACCGT
1 AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
* * *
67833825 AACACGTCAATGCTCTTAAGAGATAATCCAACCGA
1 AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
67833860 AACACGCCAA
1 AACACGCCAA
67833870 ACAGGGGGTA
Statistics
Matches: 159, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
34 1 0.01
35 158 0.99
ACGTcount: A:0.40, C:0.28, G:0.14, T:0.19
Consensus pattern (35 bp):
AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
Found at i:67833746 original size:16 final size:16
Alignment explanation
Indices: 67833693--67833746 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
67833683 GAAACACGCC
67833693 AATGCTCATAAGAGCT
1 AATGCTCATAAGAGCT
*
67833709 AAT-CTAACCATAACATGCT
1 AATGCT---CATAAGA-GCT
67833728 AATGCTCATAAGAGCT
1 AATGCTCATAAGAGCT
67833744 AAT
1 AAT
67833747 CCAACCGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
15 2 0.06
16 9 0.29
17 6 0.19
18 6 0.19
19 6 0.19
20 2 0.06
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (16 bp):
AATGCTCATAAGAGCT
Found at i:67835753 original size:27 final size:27
Alignment explanation
Indices: 67835705--67835853 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
67835695 ATGAGGCTGC
* *
67835705 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
67835732 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
67835758 CAGATATATGTGGCAGAGCGACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
67835785 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
67835812 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
67835839 CAGATAATTGTGGCA
1 CAGAT-ATTGTGGCA
67835854 ACAGATATAT
Statistics
Matches: 104, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
26 10 0.10
27 89 0.86
28 5 0.05
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:67835796 original size:54 final size:54
Alignment explanation
Indices: 67835723--67835906 Score: 212
Period size: 54 Copynumber: 3.6 Consensus size: 54
67835713 GTGACGAAGT
67835723 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* * * *
67835777 GACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGTAGAGC
1 CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
*
67835831 CACCAGATCAGATAATTGT----G-G----C--AACAGATATATGTGGCAGAAC
1 CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* *
67835874 CACCAGATCAGATATTTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCAGAGCCACCAG
67835907 GACGCTTCCT
Statistics
Matches: 107, Mismatches: 11, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
43 36 0.34
45 1 0.01
48 1 0.01
49 1 0.01
52 1 0.01
53 5 0.05
54 62 0.58
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:67835877 original size:43 final size:43
Alignment explanation
Indices: 67835811--67835896 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
67835801 AGCCACCAGG
* *
67835811 ACAGATATATGTGGTAGAGCCACCAGATCAGATAATTGTGGCA
1 ACAGATATATGTGGCAGAACCACCAGATCAGATAATTGTGGCA
*
67835854 ACAGATATATGTGGCAGAACCACCAGATCAGATATTTGTGGCA
1 ACAGATATATGTGGCAGAACCACCAGATCAGATAATTGTGGCA
67835897 TAGCCACCAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (43 bp):
ACAGATATATGTGGCAGAACCACCAGATCAGATAATTGTGGCA
Found at i:67835885 original size:27 final size:27
Alignment explanation
Indices: 67835855--67835906 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
67835845 ATTGTGGCAA
67835855 CAGATATATGTGGCAGAACCACCAGAT
1 CAGATATATGTGGCAGAACCACCAGAT
* * *
67835882 CAGATATTTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAGAACCACCAG
67835907 GACGCTTCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGATATATGTGGCAGAACCACCAGAT
Found at i:67843672 original size:20 final size:20
Alignment explanation
Indices: 67843635--67843673 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
67843625 TTAAAATATC
67843635 AAACTAATAAATTCAATAAA
1 AAACTAATAAATTCAATAAA
67843655 AAACTAATAATATT-AATAA
1 AAACTAATAA-ATTCAATAA
67843674 TTACATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (20 bp):
AAACTAATAAATTCAATAAA
Found at i:67843701 original size:29 final size:30
Alignment explanation
Indices: 67843669--67843757 Score: 116
Period size: 28 Copynumber: 3.1 Consensus size: 30
67843659 TAATAATATT
67843669 AATAAT-TACATTAAA-TTTAAAATTTTAAA
1 AATAATATA-ATTAAATTTTAAAATTTTAAA
*
67843698 AATAATATAATTAAATTTTAAAA--ATAAA
1 AATAATATAATTAAATTTTAAAATTTTAAA
67843726 AAT-ATATAAATTAAATTTTAAAATTTTAAA
1 AATAATAT-AATTAAATTTTAAAATTTTAAA
67843756 AA
1 AA
67843758 ATAAAAATTT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
27 4 0.08
28 22 0.42
29 12 0.23
30 15 0.28
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (30 bp):
AATAATATAATTAAATTTTAAAATTTTAAA
Found at i:67843766 original size:29 final size:29
Alignment explanation
Indices: 67843678--67843766 Score: 105
Period size: 29 Copynumber: 3.1 Consensus size: 29
67843668 TAATAATTAC
67843678 ATTAAA-TTTAAAATTTT-AAAAATAATATA
1 ATTAAATTTTAAAATTTTAAAAAATAA-A-A
* *
67843707 ATTAAATTTTAAAA--ATAAAAATATATAA
1 ATTAAATTTTAAAATTTTAAAAA-ATAAAA
67843735 ATTAAATTTTAAAATTTTAAAAAATAAAA
1 ATTAAATTTTAAAATTTTAAAAAATAAAA
67843764 ATT
1 ATT
67843767 TGTAGTATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
28 16 0.31
29 19 0.37
30 16 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (29 bp):
ATTAAATTTTAAAATTTTAAAAAATAAAA
Found at i:67844406 original size:3 final size:3
Alignment explanation
Indices: 67844398--67844428 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
67844388 TGCGGAAGCT
67844398 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
67844429 TTTAAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:67845057 original size:18 final size:18
Alignment explanation
Indices: 67845034--67845076 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
67845024 GAATAGGTTT
67845034 TTAATTAAACAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
67845052 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
67845070 TTAATTA
1 TTAATTA
67845077 CACCTTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:67850538 original size:30 final size:29
Alignment explanation
Indices: 67850502--67850562 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
67850492 AAACGAAAAT
67850502 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
67850532 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
67850561 TT
1 TT
67850563 CAGCTACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:67851634 original size:19 final size:19
Alignment explanation
Indices: 67851606--67851647 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
67851596 TGACTTTAAC
*
67851606 AGTTTGGAAAATT-TGATTA
1 AGTTTGG-AAATTCTGAATA
*
67851625 AGTTTTGAAATTCTGAATA
1 AGTTTGGAAATTCTGAATA
67851644 AGTT
1 AGTT
67851648 CAGTTTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (19 bp):
AGTTTGGAAATTCTGAATA
Found at i:67857803 original size:30 final size:29
Alignment explanation
Indices: 67857763--67857823 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
67857753 AAACGAAAGT
67857763 TTTGGAACTAAGTGTGCGATTTTAACTAGC
1 TTTGGAACTAAGTGTGCGA-TTTAACTAGC
*
67857793 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGAACTAAGTGTGCGATTTAACTAGC
67857822 TT
1 TT
67857824 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 12 0.40
30 18 0.60
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (29 bp):
TTTGGAACTAAGTGTGCGATTTAACTAGC
Found at i:67860339 original size:25 final size:25
Alignment explanation
Indices: 67860311--67860362 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
67860301 CTTACATGAG
67860311 TTATTGTTTCAGGTTTATTGAGATT
1 TTATTGTTTCAGGTTTATTGAGATT
67860336 TTATTGTTTCAGGTTTATTGAGATT
1 TTATTGTTTCAGGTTTATTGAGATT
67860361 TT
1 TT
67860363 GTGCCAAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.04, G:0.19, T:0.58
Consensus pattern (25 bp):
TTATTGTTTCAGGTTTATTGAGATT
Found at i:67861344 original size:14 final size:16
Alignment explanation
Indices: 67861302--67861346 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
67861292 TATACATATG
67861302 TTATATGTTATTATTAA
1 TTATATGTTA-TATTAA
*
67861319 TTATATGTTATATTAT
1 TTATATGTTATATTAA
67861335 TTAT-TG-TATATT
1 TTATATGTTATATT
67861347 TTCTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 6 0.22
15 2 0.07
16 9 0.33
17 10 0.37
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (16 bp):
TTATATGTTATATTAA
Found at i:67863390 original size:109 final size:109
Alignment explanation
Indices: 67863199--67863417 Score: 384
Period size: 109 Copynumber: 2.0 Consensus size: 109
67863189 ATTGCATAAT
** *
67863199 GGTTAAAATGTGGGGGTAATTTTGTAAATTCATATTGATAAGGGTTATAAGTTTGAGTTAGTTAT
1 GGTTAAAATGTGGGGACAATTTTGTAAATTCATATTGATAAGGGTTATAAGTTTGAGTTAATTAT
* *
67863264 TTTAATTTATTTGAATGGTTTAATTGAATGAAATTTATTATCTA
66 TTTAAGTTATTTGAATGGTTTAATTGAATGAAATGTATTATCTA
*
67863308 GGTTAAAATGTGGGGACAATTTTGTAAATTTATATTGATAAGGGTTATAAGTTTGAGTTAATTAT
1 GGTTAAAATGTGGGGACAATTTTGTAAATTCATATTGATAAGGGTTATAAGTTTGAGTTAATTAT
67863373 TTTAAGTTATTTGAATGGTTTAATTGAATGAAATGTATTATCTA
66 TTTAAGTTATTTGAATGGTTTAATTGAATGAAATGTATTATCTA
67863417 G
1 G
67863418 ATCAAGAAAC
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 104 1.00
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.45
Consensus pattern (109 bp):
GGTTAAAATGTGGGGACAATTTTGTAAATTCATATTGATAAGGGTTATAAGTTTGAGTTAATTAT
TTTAAGTTATTTGAATGGTTTAATTGAATGAAATGTATTATCTA
Found at i:67863668 original size:45 final size:43
Alignment explanation
Indices: 67863604--67863769 Score: 165
Period size: 45 Copynumber: 3.7 Consensus size: 43
67863594 ATTGAGAAAA
* ** *
67863604 GAGAAAGACCATAATTGAAAGATATCATGGCATTTTACCCCA-AAT
1 GAGAAAGACCATAGTTGAAAGATA-CATGGCA--TTAAACAAGAAT
*
67863649 GAGAAAGAACATAGTTGAAAGATACTATGGCATTAAACAAGAAT
1 GAGAAAGACCATAGTTGAAAGATAC-ATGGCATTAAACAAGAAT
* *
67863693 GAGTAAGACCATAGTTGAAAGATACCATGGCACTAAACTGAA-AAT
1 GAGAAAGACCATAGTTGAAAGATA-CATGGCATTAAAC--AAGAAT
* *
67863738 GTGTAAGACCATAGTTGAAAGATACTATGGCA
1 GAGAAAGACCATAGTTGAAAGATAC-ATGGCA
67863770 CTACATCAGG
Statistics
Matches: 106, Mismatches: 9, Indels: 12
0.83 0.07 0.09
Matches are distributed among these distances:
43 5 0.05
44 38 0.36
45 61 0.58
46 2 0.02
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (43 bp):
GAGAAAGACCATAGTTGAAAGATACATGGCATTAAACAAGAAT
Done.