Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 217 of 325
Found at i:67863759 original size:89 final size:90
Alignment explanation
Indices: 67863608--67863814 Score: 238
Period size: 89 Copynumber: 2.3 Consensus size: 90
67863598 AGAAAAGAGA
* * * ** *
67863608 AAGACCATAATTGAAAGATATCATGGCATTTTACCCCAAATGAGAAAGAACATAGTTGAAAGATA
1 AAGACCATAGTTGAAAGATACCATGGCACTAAACCCAAAATGAGAAAGAACATAGTTGAAAGATA
*
67863673 CTATGGCATTA-AACAAGAATG-AGT
66 CTATGGCACTACAACAAGAATGCA-T
** * * *
67863697 AAGACCATAGTTGAAAGATACCATGGCACTAAACTGAAAATGTGTAAGACCATAGTTGAAAGATA
1 AAGACCATAGTTGAAAGATACCATGGCACTAAACCCAAAATGAGAAAGAACATAGTTGAAAGATA
* *
67863762 CTATGGCACTACATCAGGAATGCAT
66 CTATGGCACTACAACAAGAATGCAT
** *
67863787 AAGACCACGGTTGGAAGATACCATGGCA
1 AAGACCATAGTTGAAAGATACCATGGCA
67863815 TCCTTTGGAA
Statistics
Matches: 99, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
89 64 0.65
90 34 0.34
91 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (90 bp):
AAGACCATAGTTGAAAGATACCATGGCACTAAACCCAAAATGAGAAAGAACATAGTTGAAAGATA
CTATGGCACTACAACAAGAATGCAT
Found at i:67863770 original size:45 final size:44
Alignment explanation
Indices: 67863646--67863814 Score: 189
Period size: 45 Copynumber: 3.8 Consensus size: 44
67863636 TTTTACCCCA
* * *
67863646 AATGAGAAAGAACATAGTTGAAAGATACTATGGCATTAAACAAG
1 AATGAGTAAGACCATAGTTGAAAGATACTATGGCACTAAACAAG
*
67863690 AATGAGTAAGACCATAGTTGAAAGATACCATGGCACTAAACTGAA-
1 AATGAGTAAGACCATAGTTGAAAGATACTATGGCACTAAAC--AAG
* * *
67863735 AATGTGTAAGACCATAGTTGAAAGATACTATGGCACTACATCAGG
1 AATGAGTAAGACCATAGTTGAAAGATACTATGGCACTA-AACAAG
** * *
67863780 AATGCA-TAAGACCACGGTTGGAAGATACCATGGCA
1 AATG-AGTAAGACCATAGTTGAAAGATACTATGGCA
67863815 TCCTTTGGAA
Statistics
Matches: 107, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
44 38 0.36
45 65 0.61
46 4 0.04
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.21
Consensus pattern (44 bp):
AATGAGTAAGACCATAGTTGAAAGATACTATGGCACTAAACAAG
Found at i:67867373 original size:21 final size:21
Alignment explanation
Indices: 67867349--67867393 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
67867339 ATGAATTTGA
67867349 TTTAATGCTTAGTGTGAACAT
1 TTTAATGCTTAGTGTGAACAT
*
67867370 TTTAATTCTTAGTGTGAACAT
1 TTTAATGCTTAGTGTGAACAT
67867391 TTT
1 TTT
67867394 TTATGTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.49
Consensus pattern (21 bp):
TTTAATGCTTAGTGTGAACAT
Found at i:67873884 original size:19 final size:18
Alignment explanation
Indices: 67873840--67873886 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
67873830 TCACCCTAAC
* *
67873840 AAAATCTAT-AAAAAATT
1 AAAATTTATAAAAAAAAT
*
67873857 ATAATTTATAAAAAAAAT
1 AAAATTTATAAAAAAAAT
67873875 AAAATATTATAA
1 AAAAT-TTATAA
67873887 TAGTTTATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 7 0.29
18 11 0.46
19 6 0.25
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAATTTATAAAAAAAAT
Found at i:67874450 original size:16 final size:16
Alignment explanation
Indices: 67874421--67874454 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
67874411 GTGCATTTTA
67874421 AATATTTAATTTAAAT
1 AATATTTAATTTAAAT
*
67874437 AATATCTTAATTAAAAT
1 AATAT-TTAATTTAAAT
67874454 A
1 A
67874455 CATTATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
AATATTTAATTTAAAT
Found at i:67877385 original size:9 final size:9
Alignment explanation
Indices: 67877371--67877438 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
67877361 ATTAGTATAA
67877371 AATTAACCG
1 AATTAACCG
**
67877380 AATTAATAG
1 AATTAACCG
*
67877389 AGTTAACCG
1 AATTAACCG
*
67877398 AATT-ACCTA
1 AATTAACC-G
*
67877407 AATTACCCG
1 AATTAACCG
*
67877416 AATTACCCG
1 AATTAACCG
*
67877425 AATTAACAG
1 AATTAACCG
67877434 AATTA
1 AATTA
67877439 TTTGTATAAA
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
8 3 0.07
9 41 0.89
10 2 0.04
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:67877539 original size:13 final size:13
Alignment explanation
Indices: 67877523--67877547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67877513 AATTTTTATG
67877523 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
67877536 ATTGGGTTGGGT
1 ATTGGGTTGGGT
67877548 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:67877547 original size:18 final size:18
Alignment explanation
Indices: 67877524--67877558 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
67877514 ATTTTTATGA
67877524 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
67877542 TTGGGTTGGGTACTTGG
1 TTGGGTTGGGTAATTGG
67877559 ATTAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.03, G:0.49, T:0.40
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:67889896 original size:147 final size:150
Alignment explanation
Indices: 67889735--67890024 Score: 392
Period size: 148 Copynumber: 2.0 Consensus size: 150
67889725 TAAATCAAAG
* * * * * *
67889735 TTTTCTTTAAAAAATTACTACTTTTCTTAAAAAT-CAAAACTTTATTTCGAAATAGTTG-GACAA
1 TTTTCTTTAAAAAATCACTACTTTTCTTAAAAATAAAAAACTTTATTTCAAAATAGGTGAAAAAA
*
67889798 GATCAAAAATTTGTTTTAAAAAAATTAAACTTTTCCTTAAAAATGACT-AAAAA-ATATTTTTAT
66 AATCAAAAATTTGTTTT-AAAAAATTAAACTTTTCCTTAAAAATGACTAAAAAACATATTTTTAT
67889861 TTTAAAAATCTAAAATTTCTC
130 TTTAAAAATCTAAAATTTCTC
*
67889882 TTTT-TTTAAAAAAATCACTATTTTTCTTAAAAATAAAAAACTTTATTTCAAAATAGGTGAAAAA
1 TTTTCTTT-AAAAAATCACTACTTTTCTTAAAAATAAAAAACTTTATTTCAAAATAGGTGAAAAA
* * * ** * *
67889946 AAATTAAAACTTTGTTTTAAAAATTTAAACTTTTCCTTTGATATGACTAAAAAACATGTTTTTAT
65 AAATCAAAAATTTGTTTTAAAAAATTAAACTTTTCCTTAAAAATGACTAAAAAACATATTTTTAT
67890011 TTTAAAAATCTAAA
130 TTTAAAAATCTAAA
67890025 CTCTCTTTTA
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
146 3 0.02
147 28 0.23
148 47 0.38
149 22 0.18
150 23 0.19
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (150 bp):
TTTTCTTTAAAAAATCACTACTTTTCTTAAAAATAAAAAACTTTATTTCAAAATAGGTGAAAAAA
AATCAAAAATTTGTTTTAAAAAATTAAACTTTTCCTTAAAAATGACTAAAAAACATATTTTTATT
TTAAAAATCTAAAATTTCTC
Found at i:67890222 original size:11 final size:11
Alignment explanation
Indices: 67890206--67890230 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
67890196 GTATATGACC
67890206 AAAAAAAAAAG
1 AAAAAAAAAAG
67890217 AAAAAAAAAAG
1 AAAAAAAAAAG
67890228 AAA
1 AAA
67890231 CTAGAATTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:67890366 original size:3 final size:3
Alignment explanation
Indices: 67890358--67890424 Score: 62
Period size: 3 Copynumber: 22.0 Consensus size: 3
67890348 ATTTGTAAAA
* * * * * *
67890358 AAT AAT AAT AAT AAT AAT ATTT AAT AAT AAT AGT AGT AGT GAT GAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
*
67890404 GAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
67890425 TTGGGCCCTT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
3 55 0.96
4 2 0.04
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:67895951 original size:22 final size:22
Alignment explanation
Indices: 67895926--67895980 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
67895916 TTTGCATTAT
67895926 TTAATTAAAATTA-AAATTAAAA
1 TTAATTAAAATTATAAA-TAAAA
*
67895948 TTAATCTTAAA-TATAAATAAAA
1 TTAAT-TAAAATTATAAATAAAA
67895970 TTAATTAAAAT
1 TTAATTAAAAT
67895981 ATCTTCATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 4 0.14
22 17 0.61
23 7 0.25
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAATTAAAATTATAAATAAAA
Found at i:67903885 original size:20 final size:19
Alignment explanation
Indices: 67903860--67903904 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
67903850 CAGAAAATAA
67903860 TTTTTGAAAAATGATTTACT
1 TTTTTG-AAAATGATTTACT
*
67903880 TTTTTGGAAATGATTTACT
1 TTTTTGAAAATGATTTACT
67903899 TTTTTG
1 TTTTTG
67903905 GTGTTTGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.27, C:0.04, G:0.13, T:0.56
Consensus pattern (19 bp):
TTTTTGAAAATGATTTACT
Found at i:67903890 original size:19 final size:19
Alignment explanation
Indices: 67903868--67903905 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
67903858 AATTTTTGAA
67903868 AAATGATTTACTTTTTTGG
1 AAATGATTTACTTTTTTGG
67903887 AAATGATTTACTTTTTTGG
1 AAATGATTTACTTTTTTGG
67903906 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.53
Consensus pattern (19 bp):
AAATGATTTACTTTTTTGG
Found at i:67906323 original size:21 final size:20
Alignment explanation
Indices: 67906299--67906337 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
67906289 GTTAAAAATA
67906299 ATTATCATTTTCATCATTTGG
1 ATTATCATTTTCAT-ATTTGG
67906320 ATTATCATTTTCATATTT
1 ATTATCATTTTCATATTT
67906338 TAATCCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.56
Consensus pattern (20 bp):
ATTATCATTTTCATATTTGG
Found at i:67916557 original size:6 final size:6
Alignment explanation
Indices: 67916546--67916579 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
67916536 GCCGAAAATC
67916546 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG
67916580 GAGAAAGCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:67917475 original size:42 final size:43
Alignment explanation
Indices: 67917409--67917508 Score: 107
Period size: 43 Copynumber: 2.3 Consensus size: 43
67917399 TTACGTATAC
* ** * *
67917409 GACCATGTCTGGGACATCGACATCG-TATCTG-ATTTCGTGTAA
1 GACCCTGTCTGGGACAGAGACATCGATAT-TGAATTACATGTAA
*
67917451 GACCCTGTCTGGGACAGAGGCATCGATATTGAATTACATGTAA
1 GACCCTGTCTGGGACAGAGACATCGATATTGAATTACATGTAA
67917494 GACCAC-GTCTGGGAC
1 GACC-CTGTCTGGGAC
67917509 GTCGGCATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
42 23 0.47
43 25 0.51
44 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (43 bp):
GACCCTGTCTGGGACAGAGACATCGATATTGAATTACATGTAA
Found at i:67919512 original size:32 final size:32
Alignment explanation
Indices: 67919472--67919536 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
67919462 ACATTACAAC
67919472 TTATTAACCAATTTTTAATACGACACTAATGA
1 TTATTAACCAATTTTTAATACGACACTAATGA
67919504 TTATTAACCAATTTTTAATACGACACTAATGA
1 TTATTAACCAATTTTTAATACGACACTAATGA
67919536 T
1 T
67919537 CTCATAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.38
Consensus pattern (32 bp):
TTATTAACCAATTTTTAATACGACACTAATGA
Found at i:67922782 original size:66 final size:66
Alignment explanation
Indices: 67922620--67922783 Score: 168
Period size: 67 Copynumber: 2.5 Consensus size: 66
67922610 ACATGCTGTA
* * * * *
67922620 ATAGCCAAGAAATGGTCTTACACATGTAATCCCCATGGTAGTGTCTTGGCGGACTCCACATGTTG
1 ATAGCCGAGATATGGTCTTACACATGTAA-CCCCATGGTAATGTCTTGGCAGACTCCACATGTCG
67922685 CC
65 CC
* * * * * *
67922687 ATAGCCGAGATATAGACTTACACATGTAACCCTATGTTTAATGTCTTGGCAGACTCTATA-GTCG
1 ATAGCCGAGATATGGTCTTACACATGTAACCCCATG-GTAATGTCTTGGCAGACTCCACATGTCG
67922751 CC
65 CC
* * * *
67922753 ATAGTCGAGTTGTGGTCTTACACCTGTAACC
1 ATAGCCGAGATATGGTCTTACACATGTAACC
67922784 TCTTTCGAGG
Statistics
Matches: 79, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
66 36 0.46
67 43 0.54
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (66 bp):
ATAGCCGAGATATGGTCTTACACATGTAACCCCATGGTAATGTCTTGGCAGACTCCACATGTCGC
C
Found at i:67924061 original size:26 final size:25
Alignment explanation
Indices: 67924024--67924072 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
67924014 AGTTAAAGAA
67924024 AATTCTCTTTGAGTTTTCATTTTAAG
1 AATTCTCTTTGAGTTTTC-TTTTAAG
67924050 AATT-TCTATTGAGTTTTCTTTTA
1 AATTCTCT-TTGAGTTTTCTTTTA
67924073 GAAGAGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.57
Consensus pattern (25 bp):
AATTCTCTTTGAGTTTTCTTTTAAG
Found at i:67924077 original size:27 final size:28
Alignment explanation
Indices: 67924020--67924077 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
67924010 TTTGAGTTAA
67924020 AGAA-AATTCTCTTTGAGTTTTCATTTT
1 AGAAGAATTCTCTTTGAGTTTTCATTTT
67924047 --AAGAATT-TCTATTGAGTTTTC-TTTT
1 AGAAGAATTCTCT-TTGAGTTTTCATTTT
67924072 AGAAGA
1 AGAAGA
67924078 GTTTTAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
25 9 0.33
26 14 0.52
27 4 0.15
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (28 bp):
AGAAGAATTCTCTTTGAGTTTTCATTTT
Found at i:67931361 original size:21 final size:21
Alignment explanation
Indices: 67931335--67931378 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
67931325 AGTTATTATG
67931335 TTGAATAT-TTATTCTTTATTT
1 TTGAATATCTTATTC-TTATTT
* *
67931356 TTGAATTTCTTCTTCTTATTT
1 TTGAATATCTTATTCTTATTT
67931377 TT
1 TT
67931379 TCCAAATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.18, C:0.09, G:0.05, T:0.68
Consensus pattern (21 bp):
TTGAATATCTTATTCTTATTT
Found at i:67938100 original size:47 final size:47
Alignment explanation
Indices: 67938022--67938570 Score: 918
Period size: 47 Copynumber: 11.6 Consensus size: 47
67938012 CCCTTCGGGA
* * * * * *
67938022 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67938069 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67938116 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67938163 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67938210 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67938259 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67938308 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67938355 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67938402 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67938451 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67938498 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67938545 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
67938571 CACAATTATC
Statistics
Matches: 478, Mismatches: 20, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 338 0.71
49 140 0.29
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67938606 original size:143 final size:142
Alignment explanation
Indices: 67938022--67938570 Score: 933
Period size: 143 Copynumber: 3.9 Consensus size: 142
67938012 CCCTTCGGGA
* * * * * * * *
67938022 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
67938087 TTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC-TTCACATTCATCACA
*
67938150 TCGGCCATTAGGC
130 TCGGCCATTCGGC
67938163 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
67938228 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC-TTCACATTCATCA
67938293 CATCGGCCATTCGGC
128 CATCGGCCATTCGGC
67938308 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
67938373 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC-TTCACATTCATCACA
*
67938438 TTGGCCATTCGGC
130 TCGGCCATTCGGC
67938451 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
67938516 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA-TTCACAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTCACAT
67938571 CACAATTATC
Statistics
Matches: 393, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
141 54 0.14
143 246 0.63
145 93 0.24
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTCACATTCATCACAT
CGGCCATTCGGC
Found at i:67941938 original size:40 final size:40
Alignment explanation
Indices: 67941906--67942133 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
67941896 CCAGCATGAT
* * * *
67941906 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
67941946 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
67941986 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
67942026 TGCTCTTTGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
67942066 TGCTCTACGGGACTTAGCCCGGGTACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
67942106 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
67942134 GTTGAGACCT
Statistics
Matches: 163, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 5 0.03
40 156 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:67944436 original size:47 final size:47
Alignment explanation
Indices: 67944358--67944857 Score: 806
Period size: 47 Copynumber: 10.6 Consensus size: 47
67944348 CCCTTCGGGA
* * * * * *
67944358 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67944405 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67944452 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67944499 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67944546 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67944595 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67944644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67944691 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATT-GGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67944738 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67944785 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67944832 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
67944858 CACAATTATC
Statistics
Matches: 427, Mismatches: 20, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
45 27 0.06
46 7 0.02
47 265 0.62
48 7 0.02
49 121 0.28
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67947826 original size:23 final size:23
Alignment explanation
Indices: 67947775--67947826 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
67947765 TTGTCGCAAC
*
67947775 GACTTAAATTCTCGTCGTGCCAT
1 GACTTGAATTCTCGTCGTGCCAT
* *
67947798 GACTTGAATTCTTGTCGTTCCAT
1 GACTTGAATTCTCGTCGTGCCAT
67947821 GACTTG
1 GACTTG
67947827 GGCTTAACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (23 bp):
GACTTGAATTCTCGTCGTGCCAT
Found at i:67950625 original size:42 final size:40
Alignment explanation
Indices: 67950531--67950688 Score: 122
Period size: 43 Copynumber: 3.7 Consensus size: 40
67950521 GCATGCGATT
* * * *
67950531 TCGTGTAAGACCACGTA-TGGGACATGGCTTCAAAAATGAGAC
1 TCGTGTAAGACCA--TATTGGGATATGGCATC-GATATGAGAC
* *
67950573 TTCGTATAAGACCATATCTAGGATATGGCATCGATATGAGAC
1 -TCGTGTAAGACCATAT-TGGGATATGGCATCGATATGAGAC
*
67950615 ATCGTGTAAGACCATAGTTGGGCTATTGGCATCGATAT-ATGATC
1 -TCGTGTAAGACCATA-TTGGGATA-TGGCATCGATATGA-GA-C
* *
67950659 CCATGTAAGACCATATATGGGATATGGCAT
1 TCGTGTAAGACCATAT-TGGGATATGGCAT
67950689 TGGCATCTTA
Statistics
Matches: 95, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
41 2 0.02
42 35 0.37
43 57 0.60
44 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (40 bp):
TCGTGTAAGACCATATTGGGATATGGCATCGATATGAGAC
Found at i:67950955 original size:26 final size:27
Alignment explanation
Indices: 67950919--67950975 Score: 107
Period size: 26 Copynumber: 2.1 Consensus size: 27
67950909 TGTAAATGAC
67950919 ATGATTTAAGATGTATCTAAATACTTG
1 ATGATTTAAGATGTATCTAAATACTTG
67950946 ATGA-TTAAGATGTATCTAAATACTTG
1 ATGATTTAAGATGTATCTAAATACTTG
67950972 ATGA
1 ATGA
67950976 CATTGTGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.39
Consensus pattern (27 bp):
ATGATTTAAGATGTATCTAAATACTTG
Found at i:67954064 original size:23 final size:24
Alignment explanation
Indices: 67954030--67954075 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
67954020 TGTTACAACT
67954030 CTCCCCCACTTAGGAAATTTCTTA
1 CTCCCCCACTTAGGAAATTTCTTA
67954054 CTCCCCC-CTTAGGAAATTTCTT
1 CTCCCCCACTTAGGAAATTTCTT
67954076 TCTCAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.22, C:0.35, G:0.09, T:0.35
Consensus pattern (24 bp):
CTCCCCCACTTAGGAAATTTCTTA
Found at i:67959644 original size:44 final size:44
Alignment explanation
Indices: 67959596--67959692 Score: 158
Period size: 44 Copynumber: 2.2 Consensus size: 44
67959586 AATGATTAGC
* *
67959596 CGAAGCTATAACGATATCACACACTTCGTGCCATCACATTAAAT
1 CGAAGCTATAACGATATCACAAACTTAGTGCCATCACATTAAAT
**
67959640 CGAAGCTATAACGATATTGCAAACTTAGTGCCATCACATTAAAT
1 CGAAGCTATAACGATATCACAAACTTAGTGCCATCACATTAAAT
67959684 CGAAGCTAT
1 CGAAGCTAT
67959693 CTCAATATTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (44 bp):
CGAAGCTATAACGATATCACAAACTTAGTGCCATCACATTAAAT
Found at i:67959701 original size:44 final size:44
Alignment explanation
Indices: 67959596--67959704 Score: 146
Period size: 44 Copynumber: 2.5 Consensus size: 44
67959586 AATGATTAGC
* ** * *
67959596 CGAAGCTATAACGATATCACACACTTCGTGCCATCACATTAAAT
1 CGAAGCTATAACAATATTGCAAACTTAGTGCCATCACATTAAAT
*
67959640 CGAAGCTATAACGATATTGCAAACTTAGTGCCATCACATTAAAT
1 CGAAGCTATAACAATATTGCAAACTTAGTGCCATCACATTAAAT
**
67959684 CGAAGCTATCTCAATATTGCA
1 CGAAGCTATAACAATATTGCA
67959705 CACTAAGTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.27
Consensus pattern (44 bp):
CGAAGCTATAACAATATTGCAAACTTAGTGCCATCACATTAAAT
Found at i:67961811 original size:40 final size:40
Alignment explanation
Indices: 67961767--67961843 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
67961757 ATCCTTGATT
* *
67961767 ACACTTCAGTATTCCTATTTGCACAACTGTGCCCCTGTAA
1 ACACTTCAGTATCCCTATTTGCACAACTGTGACCCTGTAA
* * *
67961807 ACACTTCAGTGTCCCTGTTTGCACATCTGTGACCCTG
1 ACACTTCAGTATCCCTATTTGCACAACTGTGACCCTG
67961844 GATGCACTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.32
Consensus pattern (40 bp):
ACACTTCAGTATCCCTATTTGCACAACTGTGACCCTGTAA
Found at i:67961849 original size:20 final size:20
Alignment explanation
Indices: 67961826--67961890 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
67961816 TGTCCCTGTT
67961826 TGCACATCTGTGACCCTGGA
1 TGCACATCTGTGACCCTGGA
* *
67961846 TGCAC-TCTAAT-ACCCTTGA
1 TGCACATCT-GTGACCCTGGA
* * *
67961865 TAGCACATTTGTGTCCCTGAA
1 T-GCACATCTGTGACCCTGGA
67961886 TGCAC
1 TGCAC
67961891 TTCGGTGCCT
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
19 11 0.32
20 15 0.44
21 8 0.24
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (20 bp):
TGCACATCTGTGACCCTGGA
Found at i:67963029 original size:22 final size:22
Alignment explanation
Indices: 67963003--67963048 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
67962993 TTATTCTATG
67963003 AATTG-ATATATGTTTATAAATT
1 AATTGAATAT-TGTTTATAAATT
* *
67963025 AATTGAATATTTTTTCTAAATT
1 AATTGAATATTGTTTATAAATT
67963047 AA
1 AA
67963049 GATAAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (22 bp):
AATTGAATATTGTTTATAAATT
Found at i:67965510 original size:27 final size:27
Alignment explanation
Indices: 67965480--67965532 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
67965470 AAAGATCACG
67965480 CCTCCA-TTGTAACCCACTAAACCCACA
1 CCTCCAGTT-TAACCCACTAAACCCACA
*
67965507 CCTCCAGTTTAACCCACTAAATCCAC
1 CCTCCAGTTTAACCCACTAAACCCAC
67965533 TAAACCCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.32, C:0.43, G:0.04, T:0.21
Consensus pattern (27 bp):
CCTCCAGTTTAACCCACTAAACCCACA
Found at i:67966368 original size:22 final size:22
Alignment explanation
Indices: 67966343--67966384 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
67966333 AAGTCACCAC
*
67966343 TGATTTGCAGTTAAACTACCCT
1 TGATTTGCAGATAAACTACCCT
67966365 TGATTTGCAGATAAACTACC
1 TGATTTGCAGATAAACTACC
67966385 ACTAATAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.33
Consensus pattern (22 bp):
TGATTTGCAGATAAACTACCCT
Found at i:67977840 original size:20 final size:20
Alignment explanation
Indices: 67977812--67977849 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67977802 ACTTAAACAC
* *
67977812 AAATTTAATCTTTAAAATAA
1 AAATATAATCTTAAAAATAA
67977832 AAATATAATCTTAAAAAT
1 AAATATAATCTTAAAAAT
67977850 TATATCTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATATAATCTTAAAAATAA
Found at i:67987065 original size:14 final size:14
Alignment explanation
Indices: 67987046--67987131 Score: 100
Period size: 14 Copynumber: 6.1 Consensus size: 14
67987036 TCACATATAT
*
67987046 GGTTCACACCTAGG
1 GGTTCGCACCTAGG
*
67987060 GGTTCACACCTAGG
1 GGTTCGCACCTAGG
* *
67987074 GGTTTGCACATAGG
1 GGTTCGCACCTAGG
67987088 GGTTCGCACCTAGG
1 GGTTCGCACCTAGG
* *
67987102 GTTTTGCACCTAGG
1 GGTTCGCACCTAGG
* *
67987116 GGTTCGTACGTAGG
1 GGTTCGCACCTAGG
67987130 GG
1 GG
67987132 CTCATATCGA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 61 1.00
ACGTcount: A:0.17, C:0.22, G:0.35, T:0.26
Consensus pattern (14 bp):
GGTTCGCACCTAGG
Found at i:67987121 original size:28 final size:28
Alignment explanation
Indices: 67987052--67987131 Score: 115
Period size: 28 Copynumber: 2.9 Consensus size: 28
67987042 ATATGGTTCA
*
67987052 CACCTAGGGGTTCACACCTAGGGGTTTG
1 CACCTAGGGGTTCGCACCTAGGGGTTTG
* *
67987080 CACATAGGGGTTCGCACCTAGGGTTTTG
1 CACCTAGGGGTTCGCACCTAGGGGTTTG
* *
67987108 CACCTAGGGGTTCGTACGTAGGGG
1 CACCTAGGGGTTCGCACCTAGGGG
67987132 CTCATATCGA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.17, C:0.23, G:0.35, T:0.25
Consensus pattern (28 bp):
CACCTAGGGGTTCGCACCTAGGGGTTTG
Found at i:67987201 original size:15 final size:15
Alignment explanation
Indices: 67987156--67987203 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
67987146 TTCGCACATG
**
67987156 TAGGGTTCACATAAA
1 TAGGGTTCACATACC
* **
67987171 TAGGTTTCACGCACC
1 TAGGGTTCACATACC
67987186 TAGGGTTCACATACC
1 TAGGGTTCACATACC
67987201 TAG
1 TAG
67987204 TTTTCGCATA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (15 bp):
TAGGGTTCACATACC
Found at i:67987409 original size:43 final size:43
Alignment explanation
Indices: 67987361--67987450 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
67987351 TAAGGGCTCA
* *
67987361 CACAATAGGGGCTCACACATAAAGGTTCACAGACATGGCCTCG
1 CACAATAGAGGCTCACACATAAAGGTTCACAAACATGGCCTCG
* * * * *
67987404 CACAATAGAGGCTCGCTCATAGAGGTTCACAAACATGGGCTTG
1 CACAATAGAGGCTCACACATAAAGGTTCACAAACATGGCCTCG
67987447 CACA
1 CACA
67987451 GCATGGGGGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.18
Consensus pattern (43 bp):
CACAATAGAGGCTCACACATAAAGGTTCACAAACATGGCCTCG
Found at i:67987545 original size:22 final size:21
Alignment explanation
Indices: 67987520--67987589 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 21
67987510 TATAAACTTG
*
67987520 CATATATAAACATTTAGGTTCA
1 CATATAT-AACATATAGGTTCA
67987542 CATATACTAACATATAGGTTCA
1 CATATA-TAACATATAGGTTCA
*
67987564 CATATATCAACATATAGGTTCT
1 CATATAT-AACATATAGGTTCA
67987586 CATA
1 CATA
67987590 CTTTAGAACT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 1 0.02
22 42 0.95
23 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (21 bp):
CATATATAACATATAGGTTCA
Found at i:67992186 original size:11 final size:12
Alignment explanation
Indices: 67992163--67992236 Score: 52
Period size: 11 Copynumber: 6.7 Consensus size: 12
67992153 AGTTCAGGTA
67992163 AGATGCAGA-AC
1 AGATGCAGATAC
67992174 AGAT-CAGATAC
1 AGATGCAGATAC
* * *
67992185 AGATGTA-AAAT
1 AGATGCAGATAC
* *
67992196 AGAT-CTGATAT
1 AGATGCAGATAC
67992207 AGATGCAGA-AC
1 AGATGCAGATAC
*
67992218 ATAT-CAGATAC
1 AGATGCAGATAC
67992229 AGATGCAG
1 AGATGCAG
67992237 TTTCTTACCC
Statistics
Matches: 47, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
10 8 0.17
11 32 0.68
12 7 0.15
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.20
Consensus pattern (12 bp):
AGATGCAGATAC
Found at i:67992236 original size:22 final size:22
Alignment explanation
Indices: 67992150--67992236 Score: 95
Period size: 22 Copynumber: 4.0 Consensus size: 22
67992140 GTAATATCGT
* *
67992150 AACAGTTCAGGTA-AGATGCAG
1 AACAGATCAGATACAGATGCAG
* *
67992171 AACAGATCAGATACAGATGTAA
1 AACAGATCAGATACAGATGCAG
* * *
67992193 AATAGATCTGATATAGATGCAG
1 AACAGATCAGATACAGATGCAG
*
67992215 AACATATCAGATACAGATGCAG
1 AACAGATCAGATACAGATGCAG
67992237 TTTCTTACCC
Statistics
Matches: 52, Mismatches: 13, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
21 11 0.21
22 41 0.79
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.21
Consensus pattern (22 bp):
AACAGATCAGATACAGATGCAG
Found at i:67996965 original size:26 final size:26
Alignment explanation
Indices: 67996922--67996992 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
67996912 TTTTCTTGAG
*
67996922 ATTTTACC-AGGGACAAAATTGTTAAA
1 ATTTTACCAAGGGA-AAAATTGTCAAA
*
67996948 ATTTTACCAAGGGTAAAATTGTCAAA
1 ATTTTACCAAGGGAAAAATTGTCAAA
* *
67996974 ATTTTGCTAAGGGAAAAAT
1 ATTTTACCAAGGGAAAAAT
67996993 AGAGATGAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 35 0.90
27 4 0.10
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (26 bp):
ATTTTACCAAGGGAAAAATTGTCAAA
Found at i:68000548 original size:24 final size:24
Alignment explanation
Indices: 68000513--68000559 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
68000503 AACACACCAC
68000513 AGCTCTTACGAGCGTCCCATTATT
1 AGCTCTTACGAGCGTCCCATTATT
*
68000537 AGCTCTCT-CGAGCTTCCCATTAT
1 AGCTCT-TACGAGCGTCCCATTAT
68000560 AAGGTTCTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.34
Consensus pattern (24 bp):
AGCTCTTACGAGCGTCCCATTATT
Found at i:68009501 original size:36 final size:36
Alignment explanation
Indices: 68009461--68009533 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
68009451 TAATTAGGTG
68009461 ATAATTAATCTATTTATATATATAATACAAAATACT
1 ATAATTAATCTATTTATATATATAATACAAAATACT
68009497 ATAATTAATCTATTTATATATATAATACAAAATACT
1 ATAATTAATCTATTTATATATATAATACAAAATACT
68009533 A
1 A
68009534 ATTTTTAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (36 bp):
ATAATTAATCTATTTATATATATAATACAAAATACT
Found at i:68012135 original size:31 final size:32
Alignment explanation
Indices: 68012097--68012165 Score: 122
Period size: 31 Copynumber: 2.2 Consensus size: 32
68012087 ATAGCCTCAA
68012097 ACATGGGGTAAGTTGCCAATGCAAT-TCCCAG
1 ACATGGGGTAAGTTGCCAATGCAATGTCCCAG
*
68012128 ACATGGGGTAAGTTGCCAATGCCATGTCCCAG
1 ACATGGGGTAAGTTGCCAATGCAATGTCCCAG
68012160 ACATGG
1 ACATGG
68012166 TCTTACACTA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 24 0.67
32 12 0.33
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (32 bp):
ACATGGGGTAAGTTGCCAATGCAATGTCCCAG
Found at i:68012399 original size:94 final size:94
Alignment explanation
Indices: 68012141--68012410 Score: 276
Period size: 94 Copynumber: 2.8 Consensus size: 94
68012131 TGGGGTAAGT
* * * * *
68012141 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTATTATCATCGAGGCTGATGCCATGTCC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AT-GTGGCCGATG-CATGTCC
* * * *
68012206 CAGACATTGTCTTATACTAGCTCTCACATGTCCG
63 CAGACA-TGTCTTACACTAGCACT-ACATCTCAG
* ** * * *
68012240 TGCCAATGTCATGTCCTGGACATGGTCTTACACTGACACATC-T-TGTAGCCGATGCATGTCCCA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATATGTGGCCGATGCATGTCCCA
*
68012303 GACATGTCTTACACTAGCACT-CGTCTCAG
65 GACATGTCTTACACTAGCACTACATCTCAG
* * * *
68012332 TGCCGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCTCATAATGTGGCCAATGCATGTCTCA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTGGCCGATGCATGTCCCA
68012397 GACATGTCTTACAC
65 GACATGTCTTACAC
68012411 CAGCTCACAC
Statistics
Matches: 141, Mismatches: 26, Indels: 13
0.78 0.14 0.07
Matches are distributed among these distances:
91 2 0.01
92 38 0.27
94 46 0.33
95 13 0.09
96 7 0.05
97 1 0.01
99 33 0.23
100 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (94 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACTACATCTCAG
Found at i:68022403 original size:41 final size:45
Alignment explanation
Indices: 68022289--68022409 Score: 130
Period size: 41 Copynumber: 2.8 Consensus size: 45
68022279 ATGTGTTCTT
*
68022289 GTGTAAGACCATGTCTGGGAC-GTTGGCAAT-GATATATGTGGTTAC
1 GTGTAAGACCATGTCTGGGACAG-TGGC-ATCGATATATGTGATTAC
* *
68022334 GTGTAAAACCATGTCTGGGAGA-TCGGCATCG-TAT-T-TGATT-C
1 GTGTAAGACCATGTCTGGGACAGT-GGCATCGATATATGTGATTAC
*
68022375 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATAT
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATAT
68022410 GAGATAGCAT
Statistics
Matches: 65, Mismatches: 6, Indels: 13
0.77 0.07 0.15
Matches are distributed among these distances:
41 27 0.42
42 8 0.12
43 1 0.02
44 6 0.09
45 23 0.35
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (45 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGATATATGTGATTAC
Found at i:68024410 original size:37 final size:37
Alignment explanation
Indices: 68024310--68024412 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
68024300 CGAATAGTCC
* *
68024310 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
68024347 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
68024384 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
68024413 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:68024611 original size:48 final size:48
Alignment explanation
Indices: 68024553--68024746 Score: 334
Period size: 48 Copynumber: 4.0 Consensus size: 48
68024543 ATATACACAC
*
68024553 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
68024601 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
68024649 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
68024697 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCTCATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
68024745 AT
1 AT
68024747 TTATCTTGTA
Statistics
Matches: 140, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 140 1.00
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:68028802 original size:14 final size:14
Alignment explanation
Indices: 68028783--68028812 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
68028773 ACTCCAAGTT
68028783 TCTTTCTAAGAAAC
1 TCTTTCTAAGAAAC
68028797 TCTTTCTAAGAAAC
1 TCTTTCTAAGAAAC
68028811 TC
1 TC
68028813 AAACTTGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (14 bp):
TCTTTCTAAGAAAC
Found at i:68034561 original size:43 final size:43
Alignment explanation
Indices: 68034508--68034652 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 43
68034498 CGAGATGTGC
*
68034508 TTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGTGA
1 TTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTATGA
* *
68034551 TTACGTGTAAGACCATGTCTGGGACATTGGCA-T-TATTAAATGA
1 TTACATGTAAGACCATGTCTAGGACATTGGCATTGTATT--ATGA
* * * * *
68034594 TTTCGTGTAAAACCCTGTCTAGGACAGTGGCATTG-ATTTATGA
1 TTACATGTAAGACCATGTCTAGGACATTGGCATTGTA-TTATGA
*
68034637 TAACATGTAAGACCAT
1 TTACATGTAAGACCAT
68034653 ATTTGGGATA
Statistics
Matches: 84, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 4 0.05
42 1 0.01
43 75 0.89
44 2 0.02
45 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTATGA
Found at i:68034660 original size:86 final size:85
Alignment explanation
Indices: 68034513--68034669 Score: 208
Period size: 86 Copynumber: 1.8 Consensus size: 85
68034503 TGTGCTTACA
* * * * * *
68034513 TGTAAGACCATGTCTAGGACATTGGCATTGTATTGTGATTACGTGTAAGACCATGTCTGGGACAT
1 TGTAAAACCATGTCTAGGACAGTGGCATTGTATTATGATAACATGTAAGACCATATCTGGGACA-
68034578 TGGCATTATTAAATGATTTCG
65 TGGCATTATTAAATGATTTCG
* * *
68034599 TGTAAAACCCTGTCTAGGACAGTGGCATTG-ATTTATGATAACATGTAAGACCATATTTGGGATA
1 TGTAAAACCATGTCTAGGACAGTGGCATTGTA-TTATGATAACATGTAAGACCATATCTGGGACA
68034663 TGGCATT
65 TGGCATT
68034670 GTACGAGCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 8 0.13
86 53 0.87
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (85 bp):
TGTAAAACCATGTCTAGGACAGTGGCATTGTATTATGATAACATGTAAGACCATATCTGGGACAT
GGCATTATTAAATGATTTCG
Found at i:68049187 original size:33 final size:34
Alignment explanation
Indices: 68049148--68049212 Score: 114
Period size: 33 Copynumber: 1.9 Consensus size: 34
68049138 TTCAATTAGA
*
68049148 ATTTAGCCTGGACTGGTAATCCTAA-TTGACTGG
1 ATTTAGCCTGGACTGGTAATCCAAATTTGACTGG
68049181 ATTTAGCCTGGACTGGTAATCCAAATTTGACT
1 ATTTAGCCTGGACTGGTAATCCAAATTTGACT
68049213 CTATAGGGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 24 0.80
34 6 0.20
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (34 bp):
ATTTAGCCTGGACTGGTAATCCAAATTTGACTGG
Found at i:68055084 original size:20 final size:20
Alignment explanation
Indices: 68055059--68055102 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
68055049 AATAGGTTCT
*
68055059 GTACATACCTATATCGTCTC
1 GTACATACCTATATAGTCTC
*
68055079 GTACATACCTGTATAGTCTC
1 GTACATACCTATATAGTCTC
68055099 GTAC
1 GTAC
68055103 TAACCTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (20 bp):
GTACATACCTATATAGTCTC
Found at i:68057025 original size:21 final size:22
Alignment explanation
Indices: 68056999--68057101 Score: 68
Period size: 21 Copynumber: 4.8 Consensus size: 22
68056989 GATAATATTT
68056999 TCTTTATTTTATTAT-TTATCA
1 TCTTTATTTTATTATCTTATCA
*
68057020 TCTTTATTTTTTTATCTT-TCA
1 TCTTTATTTTATTATCTTATCA
** * *** * ** **
68057041 TGATGATAAAATGATGATATTT
1 TCTTTATTTTATTATCTTATCA
68057063 TCTTTATTTTATTAT-TTATCA
1 TCTTTATTTTATTATCTTATCA
*
68057084 TCTTTATTTTTTTATCTT
1 TCTTTATTTTATTATCTT
68057102 TCCAATTTTA
Statistics
Matches: 55, Mismatches: 24, Indels: 5
0.65 0.29 0.06
Matches are distributed among these distances:
21 42 0.76
22 13 0.24
ACGTcount: A:0.23, C:0.09, G:0.04, T:0.64
Consensus pattern (22 bp):
TCTTTATTTTATTATCTTATCA
Found at i:68057045 original size:64 final size:64
Alignment explanation
Indices: 68056976--68057103 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
68056966 TTTGGGAAAG
68056976 ATGATGATAAAATGATAATATTTTCTTTATTTTATTATTTATCATCTTTATTTTTTTATCTTTC
1 ATGATGATAAAATGATAATATTTTCTTTATTTTATTATTTATCATCTTTATTTTTTTATCTTTC
*
68057040 ATGATGATAAAATGATGATATTTTCTTTATTTTATTATTTATCATCTTTATTTTTTTATCTTTC
1 ATGATGATAAAATGATAATATTTTCTTTATTTTATTATTTATCATCTTTATTTTTTTATCTTTC
68057104 CAATTTTATC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (64 bp):
ATGATGATAAAATGATAATATTTTCTTTATTTTATTATTTATCATCTTTATTTTTTTATCTTTC
Found at i:68059417 original size:8 final size:8
Alignment explanation
Indices: 68059404--68059429 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
68059394 ATATTTGTTA
68059404 ATTAAATT
1 ATTAAATT
68059412 ATTAAATT
1 ATTAAATT
68059420 ATTAAATT
1 ATTAAATT
68059428 AT
1 AT
68059430 GAGATTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATTAAATT
Found at i:68061387 original size:20 final size:20
Alignment explanation
Indices: 68061364--68061401 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
68061354 GTTATTAAGT
68061364 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
68061384 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
68061402 ATGTGAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:68063124 original size:25 final size:25
Alignment explanation
Indices: 68063071--68063124 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
68063061 ACAGTATTCT
* * *
68063071 TTTTGTTTTTGGCTTTTTCTTTTGG
1 TTTTCTTTTTGGCTTCTTCTTTTGC
68063096 TTTTCTTTTTGGCTTCTTCTCTTT-C
1 TTTTCTTTTTGGCTTCTTCT-TTTGC
68063121 TTTT
1 TTTT
68063125 TGGAAAAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 22 0.88
26 3 0.12
ACGTcount: A:0.00, C:0.15, G:0.13, T:0.72
Consensus pattern (25 bp):
TTTTCTTTTTGGCTTCTTCTTTTGC
Found at i:68071401 original size:33 final size:33
Alignment explanation
Indices: 68071364--68071453 Score: 144
Period size: 33 Copynumber: 2.7 Consensus size: 33
68071354 TAGCTTGGCA
* *
68071364 GACTTACTTTATTTTGTGTTTACTGTCCCGATG
1 GACTTACTCTATTTTGTGTTTACTGTCCCAATG
* *
68071397 GACTTACTCTATTATGTGTTTATTGTCCCAATG
1 GACTTACTCTATTTTGTGTTTACTGTCCCAATG
68071430 GACTTACTCTATTTTGTGTTTACT
1 GACTTACTCTATTTTGTGTTTACT
68071454 CTCTTGGTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (33 bp):
GACTTACTCTATTTTGTGTTTACTGTCCCAATG
Found at i:68071467 original size:33 final size:33
Alignment explanation
Indices: 68071363--68071473 Score: 132
Period size: 33 Copynumber: 3.4 Consensus size: 33
68071353 CTAGCTTGGC
*
68071363 AGACTTACTTTATTTTGTGTTTACTGTCCCGAT
1 AGACTTACTCTATTTTGTGTTTACTGTCCCGAT
* * * *
68071396 GGACTTACTCTATTATGTGTTTATTGTCCCAAT
1 AGACTTACTCTATTTTGTGTTTACTGTCCCGAT
* * ** *
68071429 GGACTTACTCTATTTTGTGTTTACTCTCTTGGT
1 AGACTTACTCTATTTTGTGTTTACTGTCCCGAT
68071462 AGACTTACTCTA
1 AGACTTACTCTA
68071474 CTAAGGCCAT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 65 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (33 bp):
AGACTTACTCTATTTTGTGTTTACTGTCCCGAT
Found at i:68075305 original size:10 final size:10
Alignment explanation
Indices: 68075290--68075321 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
68075280 TAAATACATT
68075290 TAATTAAAGA
1 TAATTAAAGA
68075300 TAATTAAAGA
1 TAATTAAAGA
68075310 TAATTAAA-A
1 TAATTAAAGA
68075319 TAA
1 TAA
68075322 AATCCTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:68077748 original size:47 final size:47
Alignment explanation
Indices: 68077639--68077749 Score: 113
Period size: 47 Copynumber: 2.4 Consensus size: 47
68077629 CCGGGATAAG
*
68077639 CACATAGTG-CTTCATCGGAACAAATCCGACACTTTAACATTATAGTA
1 CACATAGTGTC-TCATCGGAACAAATCCGACACTTTAACAGTATAGTA
* * * *
68077686 CACAAAGTAAT-TCATCGGAACAAATTCGGA-ACTTTAACAGTAGTCG-A
1 CACATAGT-GTCTCATCGGAACAAA-TCCGACACTTTAACAGTA-TAGTA
68077733 CACATAGTGTCTCATCG
1 CACATAGTGTCTCATCG
68077750 ACTCAATGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
46 1 0.02
47 45 0.87
48 6 0.12
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (47 bp):
CACATAGTGTCTCATCGGAACAAATCCGACACTTTAACAGTATAGTA
Found at i:68078031 original size:203 final size:203
Alignment explanation
Indices: 68077680--68078070 Score: 773
Period size: 203 Copynumber: 1.9 Consensus size: 203
68077670 CTTTAACATT
68077680 ATAGTACACAAAGTAATTCATCGGAACAAATTCGGAACTTTAACAGTAGTCGACACATAGTGTCT
1 ATAGTACACAAAGTAATTCATCGGAACAAATTCGGAACTTTAACAGTAGTCGACACATAGTGTCT
68077745 CATCGACTCAATGTCGGAATATCCCAATACTTCCAATTCCTATGACATGTCAACTATATCTGACT
66 CATCGACTCAATGTCGGAATATCCCAATACTTCCAATTCCTATGACATGTCAACTATATCTGACT
68077810 AGCCCGACACTATTAATAGGGTATTCAAAATCACATTCATTTCAATATGGTAAAAATAAGCTGGG
131 AGCCCGACACTATTAATAGGGTATTCAAAATCACATTCATTTCAATATGGTAAAAATAAGCTGGG
68077875 CAGGTATA
196 CAGGTATA
68077883 ATAGTACACAAAGTAATTCATCGGAACAAATTCGGAACTTTAACAGTAGTCGACACATAGTGTCT
1 ATAGTACACAAAGTAATTCATCGGAACAAATTCGGAACTTTAACAGTAGTCGACACATAGTGTCT
68077948 CATCGACTCAATGTCGGAATATCCCAATACTTCCAATTCCTATGACATGTCAACTATATCTGACT
66 CATCGACTCAATGTCGGAATATCCCAATACTTCCAATTCCTATGACATGTCAACTATATCTGACT
*
68078013 AGCCCGACACTGTTAATAGGGTATTCAAAATCACATTCATTTCAATATGGTAAAAATA
131 AGCCCGACACTATTAATAGGGTATTCAAAATCACATTCATTTCAATATGGTAAAAATA
68078071 CTTACCTCAT
Statistics
Matches: 187, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
203 187 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (203 bp):
ATAGTACACAAAGTAATTCATCGGAACAAATTCGGAACTTTAACAGTAGTCGACACATAGTGTCT
CATCGACTCAATGTCGGAATATCCCAATACTTCCAATTCCTATGACATGTCAACTATATCTGACT
AGCCCGACACTATTAATAGGGTATTCAAAATCACATTCATTTCAATATGGTAAAAATAAGCTGGG
CAGGTATA
Found at i:68078724 original size:4 final size:4
Alignment explanation
Indices: 68078715--68078743 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
68078705 CCTTTTTCTA
68078715 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
68078744 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:68085190 original size:47 final size:47
Alignment explanation
Indices: 68085082--68085191 Score: 125
Period size: 47 Copynumber: 2.3 Consensus size: 47
68085072 CGGGATAAGT
* * *
68085082 ACATAGTGTTTCATCGGAACAAATCCGGAACTTTAACATTATAGTAC
1 ACATAGTGTCTCATCGGAACAAATCCAGAACTTTAACAGTATAGTAC
* * * *
68085129 ACAAAGT-ACTTCATCGGAACAAATTCAGAACTTTAACAGTAGTCG-AC
1 ACATAGTGTC-TCATCGGAACAAATCCAGAACTTTAACAGTA-TAGTAC
68085176 ACATAGTGTCTCATCG
1 ACATAGTGTCTCATCG
68085192 ACTCAATGTC
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
47 48 0.94
48 3 0.06
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (47 bp):
ACATAGTGTCTCATCGGAACAAATCCAGAACTTTAACAGTATAGTAC
Found at i:68088710 original size:5 final size:5
Alignment explanation
Indices: 68088694--68088738 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
68088684 AAAACAGAAT
* * * *
68088694 AAATA AATTA AAATA AAACA AAATA AAATA AAATG AAATG AAATA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA
68088739 GAAAAAGAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:68088766 original size:23 final size:25
Alignment explanation
Indices: 68088734--68088789 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
68088724 AAATGAAATG
68088734 AAATAGAAAA-AGAG-ATAGAAAAAA
1 AAATA-AAAATAGAGTATAGAAAAAA
* *
68088758 AAATAAAAATTGGGTATAGAAAAAA
1 AAATAAAAATAGAGTATAGAAAAAA
68088783 ATAATAA
1 A-AATAA
68088790 TAATTGGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 4 0.15
24 7 0.26
25 11 0.41
26 5 0.19
ACGTcount: A:0.70, C:0.00, G:0.14, T:0.16
Consensus pattern (25 bp):
AAATAAAAATAGAGTATAGAAAAAA
Found at i:68088777 original size:25 final size:26
Alignment explanation
Indices: 68088748--68088798 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
68088738 AGAAAAAGAG
68088748 ATAGAAAAAAA-AATAAAAATTGGGT
1 ATAGAAAAAAATAATAAAAATTGGGT
*
68088773 ATAGAAAAAAATAATAATAATTGGGT
1 ATAGAAAAAAATAATAAAAATTGGGT
68088799 TGCCTCCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.24
Consensus pattern (26 bp):
ATAGAAAAAAATAATAAAAATTGGGT
Found at i:68095074 original size:10 final size:10
Alignment explanation
Indices: 68095056--68095086 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
68095046 TAAATACATT
68095056 TAATTAAAGA
1 TAATTAAAGA
*
68095066 TAATCAAAGA
1 TAATTAAAGA
68095076 TAATTAAAGA
1 TAATTAAAGA
68095086 T
1 T
68095087 GCTTAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.29
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:68102451 original size:30 final size:30
Alignment explanation
Indices: 68102417--68102476 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
68102407 ACTTAACAAG
68102417 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
68102447 CAAATACTTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
68102477 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:68106023 original size:45 final size:45
Alignment explanation
Indices: 68105964--68106171 Score: 337
Period size: 45 Copynumber: 4.6 Consensus size: 45
68105954 GCCCGATATC
*
68105964 ATTTCACCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTC-AAAGGCCCGAATAGT
* * * *
68106009 ATCTCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAAT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
* *
68106054 ATCTCACCGACATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
68106099 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
68106144 ATTTCACCGGCATCATAGCCTGCTAGGC
1 ATTTCACCGGCATCATAGCCTGCTAGGC
68106172 CCGAAGCCTG
Statistics
Matches: 153, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
44 3 0.02
45 150 0.98
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (45 bp):
ATTTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
Found at i:68106075 original size:90 final size:91
Alignment explanation
Indices: 68105926--68106176 Score: 354
Period size: 90 Copynumber: 2.8 Consensus size: 91
68105916 TTTTCTCTAA
* * *
68105926 TCACCGGCATT-TCGCCTGCTAGGCTT-TA-GCCCG-AT-ATCATTTCACCGGCATTATAGCCTG
1 TCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAAT-ATTTCACCGGCATCATAGCCTG
68105986 CTAGGCTCGAAA-GCCCGAATAGTATC
65 CTAGGCTCGAAAGGCCCGAATAGTATC
* *
68106012 TCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAATATCTCACCGACATCATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAATATTTCACCGGCATCATAGCCTGC
*
68106077 TAGGCTC-AAAGGCCCGAATAGTATT
66 TAGGCTCGAAAGGCCCGAATAGTATC
* * *
68106102 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAATATTTCACCGGCATCATAGCCTGC
*
68106167 TAGGCCCGAA
66 TAGGCTCGAA
68106177 GCCTGATATC
Statistics
Matches: 146, Mismatches: 12, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
86 11 0.08
87 14 0.10
88 1 0.01
89 8 0.05
90 108 0.74
91 4 0.03
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (91 bp):
TCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAATATTTCACCGGCATCATAGCCTGC
TAGGCTCGAAAGGCCCGAATAGTATC
Found at i:68108043 original size:26 final size:27
Alignment explanation
Indices: 68107991--68108043 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68107981 TTGAATTCTG
* *
68107991 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
68108018 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
68108044 CTAGCTGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:68113797 original size:47 final size:47
Alignment explanation
Indices: 68113740--68113887 Score: 242
Period size: 47 Copynumber: 3.1 Consensus size: 47
68113730 GGCTTTGCCT
* * *
68113740 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
68113787 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
68113834 CTTTTGATAACTGGGGCGTAAGCCCTTTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCC--TTTAATAACTGGGGCATAAGCC
68113883 CTTTT
1 CTTTT
68113888 ACACTTCCTC
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
47 68 0.72
49 27 0.28
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:68113801 original size:24 final size:24
Alignment explanation
Indices: 68113740--68113888 Score: 230
Period size: 24 Copynumber: 6.2 Consensus size: 24
68113730 GGCTTTGCCT
*
68113740 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
68113764 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
68113787 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
68113811 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
68113834 CTTTTGATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
68113858 CTTTTTAATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAGCC
68113883 CTTTTA
1 CTTTTA
68113889 CACTTCCTCC
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
23 43 0.38
24 48 0.42
25 22 0.19
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:68113953 original size:11 final size:11
Alignment explanation
Indices: 68113937--68113993 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
68113927 TTATGAATAC
68113937 ATCATATGCAT
1 ATCATATGCAT
68113948 ATCATA--CAT
1 ATCATATGCAT
*
68113957 ATCATGTGCAT
1 ATCATATGCAT
68113968 ATCATA--CAT
1 ATCATATGCAT
* *
68113977 GTCATGTGCAT
1 ATCATATGCAT
68113988 ATCATA
1 ATCATA
68113994 CATACCATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:68113966 original size:20 final size:20
Alignment explanation
Indices: 68113937--68114003 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
68113927 TTATGAATAC
*
68113937 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
68113957 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68113977 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68113997 ACCATGT
1 ATCATGT
68114004 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:68114072 original size:25 final size:25
Alignment explanation
Indices: 68114040--68114089 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
68114030 ATATTCAAAC
* *
68114040 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
68114065 CCTAGGGGCAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
68114090 TTTTATAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:68121850 original size:41 final size:40
Alignment explanation
Indices: 68121805--68121966 Score: 161
Period size: 41 Copynumber: 3.9 Consensus size: 40
68121795 TCTTAGTACC
68121805 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACCACT
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGA-CACT
* * *
68121846 GGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATGACACT
1 GGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-GACACT
* * *
68121886 GGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGCTATTAG-CACT
1 GGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACACT
68121929 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTTAGAC
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGAC
68121967 CCCGATTAGC
Statistics
Matches: 100, Mismatches: 9, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
39 1 0.01
40 18 0.18
41 48 0.48
42 19 0.19
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (40 bp):
GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACACT
Found at i:68128153 original size:17 final size:17
Alignment explanation
Indices: 68128133--68128167 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
68128123 GTTCATATGA
*
68128133 AATAATAGTTCATGCAT
1 AATAACAGTTCATGCAT
*
68128150 AATAACAGTTCATTCAT
1 AATAACAGTTCATGCAT
68128167 A
1 A
68128168 CCACATCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (17 bp):
AATAACAGTTCATGCAT
Found at i:68128890 original size:36 final size:36
Alignment explanation
Indices: 68128840--68128914 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
68128830 ATTAATACAA
*
68128840 TTTGCCATATTAATACAGA-TCACCAAATTAACATAG
1 TTTGCCATAATAATACA-ATTCACCAAATTAACATAG
* * * *
68128876 TTTGTCATAATAATATAATTCACCAAGTTAACATGG
1 TTTGCCATAATAATACAATTCACCAAATTAACATAG
68128912 TTT
1 TTT
68128915 ACAATATAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
35 1 0.03
36 32 0.97
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (36 bp):
TTTGCCATAATAATACAATTCACCAAATTAACATAG
Found at i:68129165 original size:31 final size:32
Alignment explanation
Indices: 68129130--68129221 Score: 102
Period size: 33 Copynumber: 3.0 Consensus size: 32
68129120 TAGAAAGCAT
*
68129130 AACAAAACTCATATA-AATATATATTATATAA
1 AACAAAACCCATATAGAATATATATTATATAA
* * *
68129161 AACAAGACCCATATATGCATATATATTATATAT
1 AACAAAACCCATATA-GAATATATATTATATAA
*
68129194 AACAAAACCC--AT-GAATATATATTGTATA
1 AACAAAACCCATATAGAATATATATTATATA
68129222 TATACACATA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
29 14 0.27
31 15 0.29
33 23 0.44
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (32 bp):
AACAAAACCCATATAGAATATATATTATATAA
Found at i:68129222 original size:31 final size:29
Alignment explanation
Indices: 68129128--68129225 Score: 88
Period size: 31 Copynumber: 3.1 Consensus size: 29
68129118 GTTAGAAAGC
* *
68129128 ATAACAAAACTCATATAAATATATATTATAT
1 ATAACAAAACCCATA-ATATATAT-TTATAT
* *
68129159 AAAACAAGACCCATATATGCATATATATTATAT
1 ATAACAAAACCCATA-AT--ATATAT-TTATAT
68129192 ATAACAAAACCCATGAATATATATTGTATAT
1 ATAACAAAACCCAT-AATATATATT-TATAT
68129223 ATA
1 ATA
68129226 CACATACCTT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
30 1 0.02
31 28 0.49
33 27 0.47
34 1 0.02
ACGTcount: A:0.51, C:0.12, G:0.04, T:0.33
Consensus pattern (29 bp):
ATAACAAAACCCATAATATATATTTATAT
Found at i:68135811 original size:18 final size:18
Alignment explanation
Indices: 68135785--68135837 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
68135775 CAAATTCTCG
*
68135785 TAATTATAATGAAAATAA
1 TAATAATAATGAAAATAA
**
68135803 TAATAATAATTCAAATAA
1 TAATAATAATGAAAATAA
68135821 TAATAACATAATGAAAA
1 TAAT-A-ATAATGAAAA
68135838 CCTTATTACA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 19 0.68
19 1 0.04
20 8 0.29
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (18 bp):
TAATAATAATGAAAATAA
Found at i:68136729 original size:28 final size:29
Alignment explanation
Indices: 68136697--68136810 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
68136687 TACCTGTATC
* *
68136697 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
68136725 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
68136754 TGGCCCATTAGGCCCAAATGACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
68136783 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
68136811 ATCATGCTCA
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 25 0.34
29 48 0.65
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:68136751 original size:57 final size:58
Alignment explanation
Indices: 68136688--68136798 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
68136678 AATTTCACAT
* *
68136688 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
68136745 ACCTGTATATGGCCCATTAGGCCCAAATGACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
68136799 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.47
58 25 0.53
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:68136947 original size:55 final size:55
Alignment explanation
Indices: 68136881--68136992 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 55
68136871 GGCCTAACAG
**
68136881 CCCATCGGGCCCATTTACCCCATTCCTTCCCATATGGCCAAATCACAACCCAAGT
1 CCCATCGGGCCCATTTACCCCATTCCGGCCCATATGGCCAAATCACAACCCAAGT
*
68136936 CCCATCGGGCCCATTTACCCCATTTCGGCCCATATGGCCAAATCACAACCCAAGT
1 CCCATCGGGCCCATTTACCCCATTCCGGCCCATATGGCCAAATCACAACCCAAGT
68136991 CC
1 CC
68136993 ACGGAATAAC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.25, C:0.42, G:0.12, T:0.21
Consensus pattern (55 bp):
CCCATCGGGCCCATTTACCCCATTCCGGCCCATATGGCCAAATCACAACCCAAGT
Found at i:68137119 original size:16 final size:16
Alignment explanation
Indices: 68137077--68137112 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
68137067 GTAGCCAAAC
68137077 TTTCGGCTTTTCGACA
1 TTTCGGCTTTTCGACA
*
68137093 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGACA
68137109 TTTC
1 TTTC
68137113 AGGTTTTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.25, G:0.19, T:0.47
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:68139101 original size:16 final size:16
Alignment explanation
Indices: 68139080--68139115 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
68139070 GGCAAAAGCT
*
68139080 GAAAAGTTAAAATGCC
1 GAAAAGCTAAAATGCC
68139096 GAAAAGCTAAAATGCC
1 GAAAAGCTAAAATGCC
68139112 GAAA
1 GAAA
68139116 GTTTGGCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.53, C:0.14, G:0.19, T:0.14
Consensus pattern (16 bp):
GAAAAGCTAAAATGCC
Found at i:68139370 original size:28 final size:27
Alignment explanation
Indices: 68139347--68139443 Score: 74
Period size: 28 Copynumber: 3.4 Consensus size: 27
68139337 ATTTGGGTCG
*
68139347 GATGGGCCATATAAATGAGATTGGACCTA
1 GATGGGCCATATAAATGAGATTGG-GC-A
* *
68139376 -ATGAGCCATATGAACGTGA-ATTGGGCTA
1 GATGGGCCATAT-AA-ATGAGATTGGGC-A
*
68139404 GATGGGCCATATAATTGAGATTGGGCCCA
1 GATGGGCCATATAAATGAGATTGGG--CA
68139433 G-TGGGCCATAT
1 GATGGGCCATAT
68139444 GCATGTATGT
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
27 3 0.05
28 31 0.54
29 19 0.33
30 4 0.07
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (27 bp):
GATGGGCCATATAAATGAGATTGGGCA
Found at i:68144763 original size:201 final size:201
Alignment explanation
Indices: 68144409--68144787 Score: 571
Period size: 201 Copynumber: 1.9 Consensus size: 201
68144399 ATAAATCAGT
*
68144409 TTTTATTGAATTAATTGAAACTATGTATGTCATTGAATTATTCAAATATGATTCAAATCATTTTT
1 TTTTATTGAATTAATTAAAACTATGTATGTCATTGAATTATTCAAATATGATTCAAATCATTTTT
* * ** * *
68144474 TAAATGTTGATTCAAATATGATTATTGTTTGTATTAAACTAAATTACAAGTTTGGACTTTTGTAT
66 TAAATATTGATTCAAATATGATTATTATTTGTAACAAACTAAATTACAAGTTTGCACTTTTGTAA
* * * *
68144539 ACTTATTGTCTGCTATGTGCATACTAATTACCTTAGGAAAGAGACAAACCAGTTTCTATTTGACA
131 ACTTATTGTCCGCCATATGCATACTAATTACCTTAGGAAAGACACAAACCAGTTTCTATTTGACA
68144604 AAAAAG
196 AAAAAG
* *
68144610 TTTTATTGAATTATTTAAAACTGTGTATGTCATTGAATTATTCAAATATGATTCAAAAT-ATTTT
1 TTTTATTGAATTAATTAAAACTATGTATGTCATTGAATTATTCAAATATGATTC-AAATCATTTT
* * * *
68144674 TTAAATATTGATTGAAATATGATTATTATTTGTAACAAACTAAATTGCAGGTTTGCATTTTTGTA
65 TTAAATATTGATTCAAATATGATTATTATTTGTAACAAACTAAATTACAAGTTTGCACTTTTGTA
* *
68144739 AACTTATTGTCCGCCGTATGCATACTAATTGCCTTAGGAAAGACACAAA
130 AACTTATTGTCCGCCATATGCATACTAATTACCTTAGGAAAGACACAAA
68144788 TCAAATCCTA
Statistics
Matches: 158, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
201 154 0.97
202 4 0.03
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (201 bp):
TTTTATTGAATTAATTAAAACTATGTATGTCATTGAATTATTCAAATATGATTCAAATCATTTTT
TAAATATTGATTCAAATATGATTATTATTTGTAACAAACTAAATTACAAGTTTGCACTTTTGTAA
ACTTATTGTCCGCCATATGCATACTAATTACCTTAGGAAAGACACAAACCAGTTTCTATTTGACA
AAAAAG
Found at i:68147821 original size:20 final size:20
Alignment explanation
Indices: 68147784--68147821 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
68147774 CCACATAATT
*
68147784 CATAAAATTTAGAATTTTTC
1 CATAAAATTTACAATTTTTC
*
68147804 CATAAATTTTAC-ATTTTT
1 CATAAAATTTACAATTTTT
68147822 ATAATTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.50
Consensus pattern (20 bp):
CATAAAATTTACAATTTTTC
Found at i:68152567 original size:43 final size:43
Alignment explanation
Indices: 68152506--68152618 Score: 165
Period size: 43 Copynumber: 2.6 Consensus size: 43
68152496 GCTGGTATTA
*
68152506 TATTCGGGCCTTCGTGCCTAGCATGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCATGCTTTGTGCCGGTGATGTG
* *
68152549 TATTCGGGCCTTCATGCCTAGTAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCATGCTTTGTGCCGGTGATGTG
* *
68152592 TATTCGGGTCTTTGA-GCCTAGCATGCT
1 TATTCGGG-CCTTCATGCCTAGCATGCT
68152619 ATAATGCCGG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 58 0.94
44 4 0.06
ACGTcount: A:0.12, C:0.22, G:0.31, T:0.35
Consensus pattern (43 bp):
TATTCGGGCCTTCATGCCTAGCATGCTTTGTGCCGGTGATGTG
Found at i:68155637 original size:33 final size:33
Alignment explanation
Indices: 68155599--68155669 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
68155589 GCTTAGTAAG
*
68155599 TACATATAATAGGAATTTAACTTACCATGTATT
1 TACATATAACAGGAATTTAACTTACCATGTATT
68155632 TACATATAACAGGAATTTAACTTACCATGTATT
1 TACATATAACAGGAATTTAACTTACCATGTATT
68155665 TACAT
1 TACAT
68155670 TTAAGATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.38
Consensus pattern (33 bp):
TACATATAACAGGAATTTAACTTACCATGTATT
Found at i:68162324 original size:12 final size:11
Alignment explanation
Indices: 68162298--68162330 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
68162288 GGGACTTAAT
68162298 TGTAAAGTGT-
1 TGTAAAGTGTG
68162308 TGTAAAGTGTG
1 TGTAAAGTGTG
68162319 TGGTAAAGTGTG
1 T-GTAAAGTGTG
68162331 AATAAATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 1 0.05
12 10 0.48
ACGTcount: A:0.27, C:0.00, G:0.36, T:0.36
Consensus pattern (11 bp):
TGTAAAGTGTG
Found at i:68167210 original size:21 final size:21
Alignment explanation
Indices: 68167158--68167211 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
68167148 TGAAGGGTAA
*
68167158 CACACGGCCATGTGATAGAGG
1 CACACGGCCGTGTGATAGAGG
* *
68167179 CACATGCCCGTGTGA-AGCAGG
1 CACACGGCCGTGTGATAG-AGG
*
68167200 GACACGGCCGTG
1 CACACGGCCGTG
68167212 AGAATAGGTC
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 2 0.08
21 24 0.92
ACGTcount: A:0.24, C:0.28, G:0.35, T:0.13
Consensus pattern (21 bp):
CACACGGCCGTGTGATAGAGG
Found at i:68194756 original size:40 final size:40
Alignment explanation
Indices: 68194431--68194771 Score: 463
Period size: 40 Copynumber: 8.6 Consensus size: 40
68194421 TATTCGGATG
* * *
68194431 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
68194471 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
68194511 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
68194551 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
68194591 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
68194631 ATATCTGGGCTAAGTCCC-AGAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGA-AGGCATTTGTGCTAGTGACT
** *
68194671 ATATCCGGGCTAAGTCCCGAAGGCATTCATACTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
68194711 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
68194751 ATATCC-AGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
68194772 ATACTTGGGT
Statistics
Matches: 272, Mismatches: 26, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.05
40 256 0.94
41 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:68197638 original size:42 final size:43
Alignment explanation
Indices: 68197561--68197662 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
68197551 TCCCGGACGT
* * **
68197561 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATAG
1 GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAGATAG
* *
68197604 GGTCTTACACG-AAATCAGATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAAATCA-ATATCGATGCCGATGTCCCAGATAG
* *
68197646 GGTCCTATACGTAAATC
1 GGTCTTACACGTAAATC
68197663 TCAATCAAAG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.61
43 19 0.39
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAGATAG
Found at i:68203305 original size:27 final size:26
Alignment explanation
Indices: 68203263--68203314 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
68203253 GCGAGGCTGC
*
68203263 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
68203289 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
68203315 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:68204016 original size:27 final size:27
Alignment explanation
Indices: 68203967--68204075 Score: 103
Period size: 27 Copynumber: 4.0 Consensus size: 27
68203957 GGGGCAAAAT
* *
68203967 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
*
68203994 GGTAATTCTACCCTAC-AGTGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATCTC
* * * *
68204021 AGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* * * *
68204048 GATAGTTCTATCCTACAGGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
68204075 G
1 G
68204076 AAAATCAAGG
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.03
27 65 0.94
28 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATCTC
Found at i:68207173 original size:12 final size:12
Alignment explanation
Indices: 68207156--68207180 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68207146 TAATTAAATG
68207156 AATTAAAAGCCA
1 AATTAAAAGCCA
68207168 AATTAAAAGCCA
1 AATTAAAAGCCA
68207180 A
1 A
68207181 TTTTTGTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AATTAAAAGCCA
Found at i:68212351 original size:43 final size:42
Alignment explanation
Indices: 68212248--68212372 Score: 144
Period size: 43 Copynumber: 3.0 Consensus size: 42
68212238 TAGGTTACTA
* * *
68212248 AGATTACATATAAAACAATATCTGGGATATGGCATCGACATG
1 AGATTACATATAAAACCATATCTGGGATATGGCATCGATACG
* * * *
68212290 AGACTT-CGTATAAGACCATAGCTGGGCTATTGGCATCGATACG
1 AGA-TTACATATAAAACCATATCTGGGATA-TGGCATCGATACG
* *
68212333 AGATTACATGTAAAACCATATCTGGGATATGGCATTGATA
1 AGATTACATATAAAACCATATCTGGGATATGGCATCGATA
68212373 TGGTACTGAG
Statistics
Matches: 67, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 33 0.49
43 34 0.51
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (42 bp):
AGATTACATATAAAACCATATCTGGGATATGGCATCGATACG
Found at i:68212525 original size:23 final size:23
Alignment explanation
Indices: 68212495--68212541 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
68212485 TACAGGTATG
68212495 TACATAAGTTTATAAGCATTGAC
1 TACATAAGTTTATAAGCATTGAC
68212518 TACATAAGTTTATAAGCATTGAC
1 TACATAAGTTTATAAGCATTGAC
68212541 T
1 T
68212542 TCATGGTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (23 bp):
TACATAAGTTTATAAGCATTGAC
Found at i:68213895 original size:20 final size:20
Alignment explanation
Indices: 68213870--68213919 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
68213860 CACGGACTAC
68213870 CCACACGGGCATGTCCCAAG
1 CCACACGGGCATGTCCCAAG
68213890 CCACACGGGCATGTCCCAAG
1 CCACACGGGCATGTCCCAAG
*
68213910 CCACATGGGC
1 CCACACGGGC
68213920 GTGTGACCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.40, G:0.26, T:0.10
Consensus pattern (20 bp):
CCACACGGGCATGTCCCAAG
Found at i:68221695 original size:43 final size:43
Alignment explanation
Indices: 68221590--68221697 Score: 171
Period size: 43 Copynumber: 2.5 Consensus size: 43
68221580 TAGCCTAGCT
* * *
68221590 ATGGTCTTACACGAAATCAAATAATGATGTCAATGTCCCAAAC
1 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAAAC
* *
68221633 ATGATCTTACACGTAATCACATAATGATGCCAATGTCCCAAGC
1 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAAAC
68221676 ATGGTCTTACACGTAATCACAT
1 ATGGTCTTACACGTAATCACAT
68221698 CTTGTTAATA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAAAC
Found at i:68232439 original size:21 final size:22
Alignment explanation
Indices: 68232399--68232439 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
68232389 TTCCAAATAA
* *
68232399 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
68232421 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
68232440 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:68233679 original size:15 final size:16
Alignment explanation
Indices: 68233652--68233681 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
68233642 AGATATTCCA
68233652 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
68233668 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
68233682 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:68240324 original size:27 final size:26
Alignment explanation
Indices: 68240237--68240328 Score: 96
Period size: 27 Copynumber: 3.5 Consensus size: 26
68240227 AATAACTGAT
*
68240237 TTCGCACACTTAGTGCTCAAAAAT-TAA
1 TTCGCACACTTAGTGCTC--AAATCAAA
* * * *
68240264 TTCACACACATAGTGCTTAAATCCAA
1 TTCGCACACTTAGTGCTCAAATCAAA
*
68240290 CTCGCACACTTAGTGCTCAATATCAAA
1 TTCGCACACTTAGTGCTCAA-ATCAAA
68240317 TTCGCACACTTA
1 TTCGCACACTTA
68240329 ATGCGTCCTT
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 4 0.08
26 18 0.34
27 31 0.58
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (26 bp):
TTCGCACACTTAGTGCTCAAATCAAA
Found at i:68240533 original size:32 final size:32
Alignment explanation
Indices: 68240474--68240572 Score: 105
Period size: 32 Copynumber: 3.1 Consensus size: 32
68240464 CTCAATCGGC
* * *
68240474 TATATCAAACTACACCTAGATACACATTCAGT
1 TATATCCAACTACACATATATACACATTCAGT
* *
68240506 TATATCCAA-TCACACATATATAGACATTCAACT
1 TATATCCAACT-ACACATATATACACATTC-AGT
68240539 T-TATCCAACTACACATATATACACACTT-AGT
1 TATATCCAACTACACATATATACACA-TTCAGT
68240570 TAT
1 TAT
68240573 GTCAAACATA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
31 4 0.07
32 45 0.82
33 6 0.11
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.31
Consensus pattern (32 bp):
TATATCCAACTACACATATATACACATTCAGT
Found at i:68243520 original size:23 final size:23
Alignment explanation
Indices: 68243476--68243520 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
68243466 ACTAACCCTT
* * *
68243476 TGTGGCATATTTTGTATAGCCTA
1 TGTGACATATTCTGGATAGCCTA
*
68243499 TGTGACATATTCTGGATGGCCT
1 TGTGACATATTCTGGATAGCCT
68243521 TTGCGGAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (23 bp):
TGTGACATATTCTGGATAGCCTA
Found at i:68248221 original size:28 final size:28
Alignment explanation
Indices: 68248181--68248270 Score: 146
Period size: 28 Copynumber: 3.2 Consensus size: 28
68248171 TGTACTAGAG
68248181 TACCCCTATGTATGCAAAATTACCATCA
1 TACCCCTATGTATGCAAAATTACCATCA
*
68248209 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATCA
*
68248237 TACCCCTATGTATGCAAAATAACC-TCTA
1 TACCCCTATGTATGCAAAATTACCATC-A
68248265 TACCCC
1 TACCCC
68248271 AGGGTTAATT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 1 0.02
28 57 0.98
ACGTcount: A:0.34, C:0.30, G:0.07, T:0.29
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATCA
Found at i:68248438 original size:27 final size:28
Alignment explanation
Indices: 68248377--68248466 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
68248367 AGGAAGCGTC
*
68248377 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* * **
68248405 CTAGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
68248432 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
68248461 CTGGTG
1 CTGGTG
68248467 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:68248477 original size:29 final size:28
Alignment explanation
Indices: 68248387--68248477 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
68248377 CTGGTGGCTA
* * * *
68248387 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
68248415 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
68248442 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
68248471 TGTCACA
1 TGCCACA
68248478 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 22 0.43
28 14 0.27
29 15 0.29
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:68248485 original size:55 final size:56
Alignment explanation
Indices: 68248377--68248491 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
68248367 AGGAAGCGTC
* * *
68248377 CTGGTGGCTATGCCACAAATTATCTGTTCTAGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
* * * *
68248432 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTAGTGACCCTGCCACATATATCTGTAT
68248488 CTGG
1 CTGG
68248492 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.60
56 19 0.38
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
Found at i:68256117 original size:28 final size:28
Alignment explanation
Indices: 68256077--68256141 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
68256067 ATGTACTATT
*
68256077 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATGACCATA
* *
68256105 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATA
68256133 ATACCCCTA
1 ATACCCCTA
68256142 GAGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATA
Done.