Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 218 of 325
Found at i:68256306 original size:27 final size:27
Alignment explanation
Indices: 68256248--68256337 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
68256238 AGGAAGCGTC
68256248 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
68256276 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
68256303 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
68256332 CTGGTG
1 CTGGTG
68256338 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:68256356 original size:55 final size:56
Alignment explanation
Indices: 68256248--68256362 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
68256238 AGGAAGCGTC
* *
68256248 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
68256303 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
68256359 CTGG
1 CTGG
68256363 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:68260411 original size:40 final size:40
Alignment explanation
Indices: 68260328--68260590 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
68260318 TTGAATGCTG
* * * * * *
68260328 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
68260368 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
68260408 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
68260448 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
68260488 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68260528 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68260567 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68260591 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:68260610 original size:79 final size:80
Alignment explanation
Indices: 68260367--68260625 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
68260357 AAGTGAATAT
* * * * * * *
68260367 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
68260431 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
68260447 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
68260512 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
68260527 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
68260591 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
68260606 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
68260626 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:68268164 original size:40 final size:40
Alignment explanation
Indices: 68268059--68268317 Score: 287
Period size: 40 Copynumber: 6.6 Consensus size: 40
68268049 TCCTCGTTCA
* * * * *
68268059 AATGCCTTC-GGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68268097 AATGCCTTCGGGACAT-ACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
68268136 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68268176 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68268216 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * * *
68268255 AAGGCCTTC-GGATCTTAATCCGGATATATTCATTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCGCACG
* *
68268294 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68268318 CAGCATCAAT
Statistics
Matches: 193, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
38 26 0.13
39 75 0.39
40 92 0.48
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68268238 original size:79 final size:78
Alignment explanation
Indices: 68268059--68268279 Score: 293
Period size: 79 Copynumber: 2.8 Consensus size: 78
68268049 TCCTCGTTCA
* * * * *
68268059 AATGCCTTCGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACAT-ACCCGGATTT
1 AATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATTT
68268123 AACAACTCGCACG
66 AACAACTCGCACG
* *
68268136 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
*
68268201 TTAATAACTCGCACG
64 TTAACAACTCGCACG
* * *
68268216 AATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGAT
68268280 ATATTCATTA
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
77 8 0.06
78 27 0.21
79 61 0.48
80 30 0.24
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (78 bp):
AATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATTT
AACAACTCGCACG
Found at i:68268308 original size:79 final size:80
Alignment explanation
Indices: 68268062--68268317 Score: 245
Period size: 79 Copynumber: 3.3 Consensus size: 80
68268052 TCGTTCAAAT
* * * * * * * *
68268062 GCCTTC-GGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACAT-ACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * **
68268124 ACAACTCGCACGACT
66 ATAACTAGCACGAAA
* * *
68268139 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
68268204 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
68268219 GCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* * *
68268282 ATTCATTAGCAC-AAA
65 AATAACTAGCACGAAA
*
68268297 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
68268318 CAGCATCAAT
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
77 6 0.04
78 35 0.23
79 83 0.54
80 30 0.19
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:68281538 original size:28 final size:28
Alignment explanation
Indices: 68281498--68281586 Score: 134
Period size: 28 Copynumber: 3.3 Consensus size: 28
68281488 GATGTACTAG
68281498 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
68281526 ATACCCCTATGTATGCAAAATTACCA-T
1 ATACCCCTATGTATGCAAAATTACCATT
68281553 ATA--CCTATGTATGCAAAA-TACC-TCT
1 ATACCCCTATGTATGCAAAATTACCAT-T
68281578 ATACCCCTA
1 ATACCCCTA
68281587 GGGTTAATTT
Statistics
Matches: 57, Mismatches: 0, Indels: 9
0.86 0.00 0.14
Matches are distributed among these distances:
24 4 0.07
25 19 0.33
27 8 0.14
28 26 0.46
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:68281750 original size:27 final size:28
Alignment explanation
Indices: 68281692--68281781 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
68281682 AGGAAGCGTC
*
68281692 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
68281720 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
68281747 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
68281776 CTGGTG
1 CTGGTG
68281782 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:68281792 original size:29 final size:28
Alignment explanation
Indices: 68281702--68281792 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
68281692 CTGGTGGCTA
* * *
68281702 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
68281730 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
68281757 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
68281786 TGTCACA
1 TGCCACA
68281793 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:68281800 original size:55 final size:56
Alignment explanation
Indices: 68281692--68281806 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
68281682 AGGAAGCGTC
* * *
68281692 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
68281747 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
68281803 CTGG
1 CTGG
68281807 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:68289390 original size:28 final size:28
Alignment explanation
Indices: 68289350--68289441 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
68289340 TGTACTAGAG
68289350 TACCCCTATGTATGCAAAATTACCATCA
1 TACCCCTATGTATGCAAAATTACCATCA
*
68289378 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATCA
*
68289406 TACCCCTATGTATGCAAAATAACC-TCTA
1 TACCCCTATGTATGCAAAATTACCATC-A
68289434 TACCCCTA
1 TACCCCTA
68289442 GGGTTAATTT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 1 0.02
28 59 0.98
ACGTcount: A:0.35, C:0.29, G:0.07, T:0.29
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATCA
Found at i:68289605 original size:27 final size:28
Alignment explanation
Indices: 68289547--68289636 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
68289537 AGGAAGCGTC
*
68289547 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
68289575 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
68289602 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
68289631 CTGGTG
1 CTGGTG
68289637 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:68289647 original size:29 final size:28
Alignment explanation
Indices: 68289557--68289647 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
68289547 CTGGTGGCTA
* * *
68289557 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
68289585 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
68289612 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
68289641 TGTCACA
1 TGCCACA
68289648 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:68289655 original size:55 final size:56
Alignment explanation
Indices: 68289547--68289661 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
68289537 AGGAAGCGTC
* * *
68289547 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
68289602 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
68289658 CTGG
1 CTGG
68289662 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:68296840 original size:23 final size:23
Alignment explanation
Indices: 68296810--68296935 Score: 123
Period size: 23 Copynumber: 5.4 Consensus size: 23
68296800 AGCTTACTAT
*
68296810 TTTCAGCTCATTGGAGCTTACCG
1 TTTCAGCTCATTAGAGCTTACCG
*
68296833 TTTCAGCTC-TTATGAGCTTACTG
1 TTTCAGCTCATTA-GAGCTTACCG
68296856 TTT-AGCTCGA-TAGAGCTTACCG
1 TTTCAGCTC-ATTAGAGCTTACCG
* * * *
68296878 TTTCAGCTCAGTGGAGCTTATCA
1 TTTCAGCTCATTAGAGCTTACCG
* *
68296901 TTTCAGCTCAATAGAGCTTACTG
1 TTTCAGCTCATTAGAGCTTACCG
68296924 TTCATCAGCTCA
1 TT--TCAGCTCA
68296936 GAAGGAGCTT
Statistics
Matches: 85, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
22 20 0.24
23 57 0.67
25 8 0.09
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (23 bp):
TTTCAGCTCATTAGAGCTTACCG
Found at i:68296895 original size:45 final size:45
Alignment explanation
Indices: 68296799--68296947 Score: 142
Period size: 45 Copynumber: 3.2 Consensus size: 45
68296789 CAGATCGAAA
* *
68296799 GAGCTTACTATTTTCAGCTCATTGGAGCTTACCGTTTCAGCTCTTA-T-
1 GAGCTTAC-A-TTTCAGCTCAATAGAGCTTACCGTTTCAGCTC--AGTG
* *
68296846 GAGCTTAC-TGTTTAGCTCGATAGAGCTTACCGTTTCAGCTCAGTG
1 GAGCTTACAT-TTCAGCTCAATAGAGCTTACCGTTTCAGCTCAGTG
* *
68296891 GAGCTTATCATTTCAGCTCAATAGAGCTTACTGTTCATCAGCTCAGAAG
1 GAGCTTA-CATTTCAGCTCAATAGAGCTTACCGTT--TCAGCTCAG-TG
68296940 GAGCTTAC
1 GAGCTTAC
68296948 CAATCATGGC
Statistics
Matches: 86, Mismatches: 8, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 34 0.40
46 22 0.26
47 9 0.10
48 10 0.12
49 8 0.09
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (45 bp):
GAGCTTACATTTCAGCTCAATAGAGCTTACCGTTTCAGCTCAGTG
Found at i:68299183 original size:53 final size:53
Alignment explanation
Indices: 68298988--68299242 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
68298978 ATTAGGGTTT
* * *
68298988 AAGGATACCGTGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * * *
68299043 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAATGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
68299098 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
68299151 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
68299200 AAGAATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
68299243 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 43 0.25
54 8 0.05
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:68299194 original size:108 final size:110
Alignment explanation
Indices: 68298998--68299195 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
68298988 AAGGATACCG
*
68298998 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
68299063 TGTCAAGACATGGCATTGATAAGTTACTATAATGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAATGCAAAGGTCCCA
* * *
68299108 TGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
68299170 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
68299196 TCAAAAGAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 23 0.28
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAATGCAAAGGTCCCA
Found at i:68299460 original size:16 final size:16
Alignment explanation
Indices: 68299439--68299469 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68299429 ATAAATTTGA
68299439 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
68299455 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
68299470 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:68313111 original size:19 final size:19
Alignment explanation
Indices: 68313087--68313132 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
68313077 GATCGAAAAT
68313087 GACTAAATTAAAATATAAA
1 GACTAAATTAAAATATAAA
*
68313106 GACTAAATTAAAATATAAG
1 GACTAAATTAAAATATAAA
68313125 GACTAAAT
1 GACTAAAT
68313133 CCACAACTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.26
Consensus pattern (19 bp):
GACTAAATTAAAATATAAA
Found at i:68315681 original size:30 final size:30
Alignment explanation
Indices: 68315647--68315704 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
68315637 CTCCACATGT
68315647 TTCATAACA-TATTTTTCCATTATCATCACA
1 TTCATAACATTA-TTTTCCATTATCATCACA
68315677 TTCATAACATTATTTTCCATTATCATCA
1 TTCATAACATTATTTTCCATTATCATCA
68315705 GATTGTACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.45
Consensus pattern (30 bp):
TTCATAACATTATTTTCCATTATCATCACA
Found at i:68317933 original size:19 final size:20
Alignment explanation
Indices: 68317899--68317938 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
68317889 AAATTTCGTA
*
68317899 TTATTTATAATTTAATCTTAT
1 TTATTTAT-ATTTAATATTAT
68317920 TTATTTAT-TTTAATATTAT
1 TTATTTATATTTAATATTAT
68317939 ACATATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
TTATTTATATTTAATATTAT
Found at i:68318767 original size:17 final size:17
Alignment explanation
Indices: 68318734--68318767 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
68318724 TAGTAATTAA
*
68318734 AATATTATTTAACTTTG
1 AATATTATTGAACTTTG
*
68318751 AATATTATTGAATTTTG
1 AATATTATTGAACTTTG
68318768 CATTATTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.53
Consensus pattern (17 bp):
AATATTATTGAACTTTG
Found at i:68321298 original size:19 final size:19
Alignment explanation
Indices: 68321274--68321343 Score: 110
Period size: 19 Copynumber: 3.8 Consensus size: 19
68321264 AGTTTAAGGT
68321274 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
68321293 ATTAGGG---ATTGATTAA
1 ATTAGGGTTAATTGATTAA
68321309 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
*
68321328 TTTAGGGTTAATTGAT
1 ATTAGGGTTAATTGAT
68321344 ACATAATCGT
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
16 16 0.34
19 31 0.66
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (19 bp):
ATTAGGGTTAATTGATTAA
Found at i:68322101 original size:126 final size:126
Alignment explanation
Indices: 68321876--68322385 Score: 795
Period size: 126 Copynumber: 4.0 Consensus size: 126
68321866 GGGTTTCTGC
* * * * * *
68321876 AAAAATAATTTTGAGTAGACGTTTCTGAATAAATAGGGTTAAAAACACTTCAAGCAGGATGTACT
1 AAAAATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
* * * *
68321941 GTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGATGTTATTTTGCTACAGTAGTTAGTAG
66 GTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAG
*
68322002 AAAAATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACT
1 AAAAATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
**
68322067 GTCAATAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAG
66 GTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAG
** * *
68322128 AAAAATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTTGAAAATGCTTCAAGCAGGTTGCACT
1 AAAAATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
* * *
68322193 GTCAGCAAATTTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTACTACAGTAGTTTGTAG
66 GTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAG
*
68322254 AAAAATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGTACT
1 AAAAATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
* * * *
68322319 GTCAGTAAAATTTCTAAAAAAAGTTCCCACGTGGACACTCTTTTGCTACAGTAGTTCGTAG
66 GTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAG
68322380 AAAAAT
1 AAAAAT
68322386 GAGGCTATAA
Statistics
Matches: 351, Mismatches: 33, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 351 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (126 bp):
AAAAATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
GTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAG
Found at i:68325880 original size:18 final size:18
Alignment explanation
Indices: 68325857--68325894 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
68325847 GGAAAATGAA
*
68325857 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGGAT
68325875 ACATATAAGGGCTAGGAT
1 ACATATAAGGGCTAGGAT
68325893 AC
1 AC
68325895 GCACCTAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAT
Found at i:68326491 original size:7 final size:7
Alignment explanation
Indices: 68326481--68326527 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
68326471 TTATATACAT
68326481 AATACTA
1 AATACTA
68326488 AATACTA
1 AATACTA
68326495 AATACTA
1 AATACTA
68326502 AATACTA
1 AATACTA
68326509 AATACTA
1 AATACTA
68326516 AATACTA
1 AATACTA
68326523 AATAC
1 AATAC
68326528 GAAACAACTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:68327631 original size:49 final size:46
Alignment explanation
Indices: 68327492--68327626 Score: 164
Period size: 49 Copynumber: 2.8 Consensus size: 46
68327482 ATGCAAACAT
* *
68327492 CATAAATAAAAAAAAATCAAGTAGTATTGAAATTTTAATTATAATTG
1 CATAAATAAAAAAATATCAAATAGTATTGAAA-TTTAATTATAATTG
*
68327539 CATAAATGAATAAAATATCAAATAGTATTGTGCAAATTTAATTA-AATTTG
1 CATAAAT-AAAAAAATATCAAATAGTA-T-TG-AAATTTAATTATAA-TTG
*
68327589 CATAAATTAAAAAATATCAAATAGTATTGAAAATTTAA
1 CATAAATAAAAAAATATCAAATAGTATTG-AAATTTAA
68327627 AATTATCACT
Statistics
Matches: 77, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
47 17 0.22
48 17 0.22
49 20 0.26
50 20 0.26
51 3 0.04
ACGTcount: A:0.53, C:0.05, G:0.08, T:0.34
Consensus pattern (46 bp):
CATAAATAAAAAAATATCAAATAGTATTGAAATTTAATTATAATTG
Found at i:68327767 original size:16 final size:17
Alignment explanation
Indices: 68327735--68327767 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
68327725 TTTTAAAAAA
68327735 TTAAATTCAAAAATTTT
1 TTAAATTCAAAAATTTT
*
68327752 TTAAATT-AAGAATTTT
1 TTAAATTCAAAAATTTT
68327768 GATAGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (17 bp):
TTAAATTCAAAAATTTT
Found at i:68334853 original size:14 final size:14
Alignment explanation
Indices: 68334836--68334862 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68334826 GAGTATGGTA
68334836 AAATATTTAAAAAG
1 AAATATTTAAAAAG
68334850 AAATATTTAAAAA
1 AAATATTTAAAAA
68334863 ATTACTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (14 bp):
AAATATTTAAAAAG
Found at i:68337350 original size:4 final size:4
Alignment explanation
Indices: 68337341--68337365 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
68337331 CGATATTAAG
68337341 AATT AATT AATT AATT AATT AATT A
1 AATT AATT AATT AATT AATT AATT A
68337366 CTGAATTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:68337738 original size:22 final size:23
Alignment explanation
Indices: 68337696--68337738 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
68337686 GACTATAAAA
68337696 CATGAAATCTGATCATCTGTTTG
1 CATGAAATCTGATCATCTGTTTG
*
68337719 CATGAATTCTGAT-ATCTGTT
1 CATGAAATCTGATCATCTGTT
68337739 CATATATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (23 bp):
CATGAAATCTGATCATCTGTTTG
Found at i:68342802 original size:23 final size:22
Alignment explanation
Indices: 68342744--68342804 Score: 81
Period size: 21 Copynumber: 2.8 Consensus size: 22
68342734 AACACATAAA
68342744 GTGCCTAAA-ACGACACACGAG
1 GTGCCTAAATACGACACACGAG
* *
68342765 GTGCCT-GATACGACATACGAG
1 GTGCCTAAATACGACACACGAG
68342786 GTGCCTAAAATACGACACA
1 GTGCCT-AAATACGACACA
68342805 TAAAGTGCCT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 23 0.70
23 9 0.27
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (22 bp):
GTGCCTAAATACGACACACGAG
Found at i:68342812 original size:23 final size:22
Alignment explanation
Indices: 68342735--68342814 Score: 65
Period size: 21 Copynumber: 3.7 Consensus size: 22
68342725 TCAGAGTACA
*
68342735 ACACATAAAGTGCCTAAA-ACG
1 ACACACAAAGTGCCTAAATACG
* * *
68342756 ACACACGAGGTGCCT-GATACG
1 ACACACAAAGTGCCTAAATACG
* * *
68342777 ACATACGAGGTGCCTAAAATACG
1 ACACACAAAGTGCCT-AAATACG
*
68342800 ACACATAAAGTGCCT
1 ACACACAAAGTGCCT
68342815 GATCGGTAAA
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
20 1 0.02
21 29 0.63
23 16 0.35
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (22 bp):
ACACACAAAGTGCCTAAATACG
Found at i:68343215 original size:15 final size:15
Alignment explanation
Indices: 68343189--68343245 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
68343179 CATATATATT
68343189 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
68343203 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
68343218 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
68343233 ATATAAATTCAAT
1 ATATAATTTCAAT
68343246 AAATTCATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:68344519 original size:5 final size:5
Alignment explanation
Indices: 68344511--68344557 Score: 94
Period size: 5 Copynumber: 9.4 Consensus size: 5
68344501 TCTTTAGTTT
68344511 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
68344558 TAAAACATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:68349320 original size:17 final size:17
Alignment explanation
Indices: 68349298--68349343 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
68349288 TGCCAATCTA
*
68349298 GGCGTGTGGGCCATATG
1 GGCGTGTGGGCCACATG
68349315 GGCGTGTGGGCCACATG
1 GGCGTGTGGGCCACATG
* *
68349332 TGCATGTGGGCC
1 GGCGTGTGGGCC
68349344 CAAAATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.11, C:0.22, G:0.46, T:0.22
Consensus pattern (17 bp):
GGCGTGTGGGCCACATG
Found at i:68353316 original size:21 final size:21
Alignment explanation
Indices: 68353280--68353322 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
68353270 AAAAATAAAG
68353280 TACTTATAGACATAAATGAGC
1 TACTTATAGACATAAATGAGC
68353301 TACTTATAGATC-TAAATGAGC
1 TACTTATAGA-CATAAATGAGC
68353322 T
1 T
68353323 CCACTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (21 bp):
TACTTATAGACATAAATGAGC
Found at i:68358474 original size:12 final size:12
Alignment explanation
Indices: 68358454--68358483 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
68358444 TTAGTGAGTT
*
68358454 ACACTGCCTAAC
1 ACACAGCCTAAC
68358466 ACACAGCCTAAC
1 ACACAGCCTAAC
68358478 ACACAG
1 ACACAG
68358484 GCGTGTGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.40, G:0.10, T:0.10
Consensus pattern (12 bp):
ACACAGCCTAAC
Found at i:68377626 original size:21 final size:21
Alignment explanation
Indices: 68377600--68377643 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
68377590 AAAATTGAAG
68377600 TAGAAATAATTATTTTATGAT
1 TAGAAATAATTATTTTATGAT
68377621 TAGAAATAATTATTTTATGAT
1 TAGAAATAATTATTTTATGAT
68377642 TA
1 TA
68377644 TTATGAGGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (21 bp):
TAGAAATAATTATTTTATGAT
Found at i:68393892 original size:13 final size:13
Alignment explanation
Indices: 68393874--68393898 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68393864 TATTATAAAC
68393874 ATTTTATGTTAGT
1 ATTTTATGTTAGT
68393887 ATTTTATGTTAG
1 ATTTTATGTTAG
68393899 AATTAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (13 bp):
ATTTTATGTTAGT
Found at i:68396059 original size:49 final size:49
Alignment explanation
Indices: 68395981--68396732 Score: 1158
Period size: 47 Copynumber: 15.6 Consensus size: 49
68395971 TATTTGAATA
* *
68395981 AATGTAAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68396028 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
68396077 AATGTGAAAATG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68396124 AATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68396173 AATGTTAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68396222 AATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68396273 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68396322 AATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
68396373 AATGTGAAAGTG--TGTATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68396420 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
68396469 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68396516 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68396565 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68396612 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
68396659 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68396706 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
68396733 TCCCGAAGGG
Statistics
Matches: 656, Mismatches: 35, Indels: 28
0.91 0.05 0.04
Matches are distributed among these distances:
47 283 0.43
48 1 0.00
49 274 0.42
51 98 0.15
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:68396094 original size:96 final size:96
Alignment explanation
Indices: 68395981--68396732 Score: 1206
Period size: 96 Copynumber: 7.8 Consensus size: 96
68395971 TATTTGAATA
* * * *
68395981 AATGTAAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
68396046 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
68396077 AATGTGAAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
68396142 CATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
68396173 AATGTTAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
68396238 TATATATGTGATAAGGCCTAATGGCCGATGTGATG
62 TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
68396273 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
68396338 TATATATGTGATAAGGCCTAATGGCCGATGTGATG
62 TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68396373 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
68396438 TATGTGATAAGGCCTAATGGCCGATATGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
68396469 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
68396534 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
68396565 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
68396628 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
68396659 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
68396723 -ATGTGATAAG
66 TATGTGATAAG
68396733 TCCCGAAGGG
Statistics
Matches: 620, Mismatches: 30, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
94 95 0.15
95 1 0.00
96 288 0.46
98 89 0.14
100 147 0.24
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:68396989 original size:37 final size:37
Alignment explanation
Indices: 68396854--68396988 Score: 225
Period size: 37 Copynumber: 3.6 Consensus size: 37
68396844 AGCTCTAAAC
68396854 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
68396891 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
* * *
68396928 GCCCGATGACTACGTGTGGAGATTTTGTCCAGGTAAG
1 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
* *
68396965 ACCCGATAACTTCGTGTGGAGATT
1 ACCCGATGACTACGTGTGGAGATT
68396989 TCGTCTGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 92 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
Found at i:68416105 original size:23 final size:23
Alignment explanation
Indices: 68416047--68416105 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
68416037 TGTAAGTCCT
* *
68416047 CTAAAACTGTTACTTGTTTCAAG
1 CTAAAACTGTTATTTGTTTCAAA
* *
68416070 CTGAAACTATTATTTGTTTCAAA
1 CTAAAACTGTTATTTGTTTCAAA
68416093 CTAAAACTGTTAT
1 CTAAAACTGTTAT
68416106 AGATAGTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (23 bp):
CTAAAACTGTTATTTGTTTCAAA
Found at i:68421016 original size:37 final size:37
Alignment explanation
Indices: 68420966--68421044 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
68420956 TTATTACGAA
* * *
68420966 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
68421003 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
68421040 GTCTT
1 GTCTT
68421045 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:68421241 original size:47 final size:47
Alignment explanation
Indices: 68421163--68422094 Score: 1623
Period size: 47 Copynumber: 19.7 Consensus size: 47
68421153 CCCTTCGGGA
* * * * * *
68421163 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68421210 CCTGTCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68421257 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68421304 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68421351 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68421398 CTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68421445 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68421492 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68421539 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68421586 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68421635 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68421682 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68421729 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68421778 TTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68421825 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68421872 GTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68421919 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68421966 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68422013 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68422060 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
68422095 AGAATCCTAA
Statistics
Matches: 850, Mismatches: 30, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 756 0.89
49 93 0.11
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68434139 original size:27 final size:29
Alignment explanation
Indices: 68434085--68434140 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
68434075 AAGTATGTGT
68434085 TTTTTTTATCTTGTTAATATAAGTATAAGC
1 TTTTTTTATCTTGTTAATATAAG-ATAAGC
68434115 TTTTTTTATCTTGTTAATA-AA-ATAAG
1 TTTTTTTATCTTGTTAATATAAGATAAG
68434141 ATATAATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 5 0.19
29 2 0.08
30 19 0.73
ACGTcount: A:0.32, C:0.05, G:0.09, T:0.54
Consensus pattern (29 bp):
TTTTTTTATCTTGTTAATATAAGATAAGC
Found at i:68435309 original size:17 final size:17
Alignment explanation
Indices: 68435268--68435309 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
68435258 ATTATTTTAT
68435268 ATTAATTAAATAAAGTAA
1 ATTAA-TAAATAAAGTAA
*
68435286 ATAAATAAATAAA-TCAA
1 ATTAATAAATAAAGT-AA
68435303 ATTAATA
1 ATTAATA
68435310 CAATTGTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 16 0.76
18 4 0.19
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
ATTAATAAATAAAGTAA
Found at i:68435396 original size:5 final size:5
Alignment explanation
Indices: 68435386--68435429 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
68435376 AATAAATAAA
68435386 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
68435430 ATAGTTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:68435941 original size:12 final size:11
Alignment explanation
Indices: 68435921--68435972 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
68435911 GTTAAGATTA
*
68435921 AAATTGAAATT
1 AAATAGAAATT
68435932 AAAGTAGAAATT
1 AAA-TAGAAATT
*
68435944 GAATAGAAATT
1 AAATAGAAATT
*
68435955 GAATAAGAAATTT
1 AAAT-AGAAA-TT
68435968 AAATA
1 AAATA
68435973 TTAAATGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 15 0.43
12 15 0.43
13 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (11 bp):
AAATAGAAATT
Found at i:68435952 original size:11 final size:11
Alignment explanation
Indices: 68435926--68435966 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
68435916 GATTAAAATT
*
68435926 GAAATTAAAGTA
1 GAAATTGAA-TA
68435938 GAAATTGAATA
1 GAAATTGAATA
68435949 GAAATTGAATAA
1 GAAATTGAAT-A
68435961 GAAATT
1 GAAATT
68435967 TAAATATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 12 0.44
12 15 0.56
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.27
Consensus pattern (11 bp):
GAAATTGAATA
Found at i:68448489 original size:15 final size:16
Alignment explanation
Indices: 68448462--68448491 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68448452 TAATATTAAA
68448462 TTATTTTTAAATTTTT
1 TTATTTTTAAATTTTT
68448478 TTATTTTT-AATTTT
1 TTATTTTTAAATTTT
68448492 AAGTAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTTTAAATTTTT
Found at i:68448699 original size:12 final size:12
Alignment explanation
Indices: 68448698--68448724 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
68448688 TTATTTGTTT
68448698 TTTGTTTTTATA
1 TTTGTTTTTATA
68448710 TTTGTTTTTATA
1 TTTGTTTTTATA
68448722 TTT
1 TTT
68448725 TTAAATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (12 bp):
TTTGTTTTTATA
Found at i:68448746 original size:26 final size:23
Alignment explanation
Indices: 68448708--68448755 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 23
68448698 TTTGTTTTTA
68448708 TATTTGTTTTTATATTTTTAAATG
1 TATTTGTTTTTATA-TTTTAAATG
68448732 TATTTGATTTATTATATTTTAAAT
1 TATTTG-TTT-TTATATTTTAAAT
68448756 TTTTTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.27
25 11 0.50
26 5 0.23
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:68449303 original size:87 final size:86
Alignment explanation
Indices: 68449197--68449374 Score: 259
Period size: 87 Copynumber: 2.0 Consensus size: 86
68449187 AAAAGTCTTT
* * * * *
68449197 AAACTTTTTCAAAATAAGCAATTAAGCCCC-CTTTTTTTTGCTCTCATTTGGGTACTTAAACTTT
1 AAACCTTTTCAAAAAAAGCAATTAAGCCCCACCTTTTTTT-CACTCAATTGGG-ACTTAAACTTT
*
68449261 CAAAATGCATCAAAAAGATCCTC
64 CAAAATGCATCAAAAAGACCCTC
68449284 AAACCTTTTCAAAAAAAGCAATTAAGCCCCTACCTTTTTTTCACTCAATTGGGACTTAAACTTTC
1 AAACCTTTTCAAAAAAAGCAATTAAGCCCC-ACCTTTTTTTCACTCAATTGGGACTTAAACTTTC
*
68449349 AAAATTCATCAAAAAGACCCTC
65 AAAATGCATCAAAAAGACCCTC
68449371 AAAC
1 AAAC
68449375 TTAAAAAAAG
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
87 64 0.78
88 10 0.12
89 8 0.10
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32
Consensus pattern (86 bp):
AAACCTTTTCAAAAAAAGCAATTAAGCCCCACCTTTTTTTCACTCAATTGGGACTTAAACTTTCA
AAATGCATCAAAAAGACCCTC
Found at i:68449503 original size:27 final size:29
Alignment explanation
Indices: 68449446--68449505 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 29
68449436 ATAAAAGCTA
68449446 TAAATACTATTAAATTTTAATAAAAAATT
1 TAAATACTATTAAATTTTAATAAAAAATT
* * *
68449475 TAAATATTA-TAAA-TTTATTAAAAATTT
1 TAAATACTATTAAATTTTAATAAAAAATT
68449502 TAAA
1 TAAA
68449506 AAAATAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 16 0.57
28 4 0.14
29 8 0.29
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (29 bp):
TAAATACTATTAAATTTTAATAAAAAATT
Found at i:68449508 original size:37 final size:37
Alignment explanation
Indices: 68449457--68449581 Score: 101
Period size: 37 Copynumber: 3.3 Consensus size: 37
68449447 AAATACTATT
**
68449457 AAATTTTAATAAAAAATTTAAATATTAT-AAA-TTTATTAA
1 AAATTTT-A-AAAAAATAAAAAT-TTATAAAATTTTA-TAA
*
68449496 AAATTTTAAAAAAATAAAAATTTGTAAAATTTTATAA
1 AAATTTTAAAAAAATAAAAATTTATAAAATTTTATAA
* * * * * *
68449533 AAATCTTAAAAAATTATAAAATATATAGAATTATAAAA
1 AAATTTTAAAAAAATA-AAAATTTATAAAATTTTATAA
*
68449571 AAATTATAAAA
1 AAATTTTAAAA
68449582 TTTTATAAAG
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
36 3 0.04
37 31 0.44
38 30 0.42
39 7 0.10
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.37
Consensus pattern (37 bp):
AAATTTTAAAAAAATAAAAATTTATAAAATTTTATAA
Found at i:68449512 original size:26 final size:28
Alignment explanation
Indices: 68449456--68449513 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
68449446 TAAATACTAT
**
68449456 TAAATTTTAATAAAAAATTTAAATATTA
1 TAAATTTTAATAAAAAATTTAAATAAAA
* *
68449484 TAAA-TTTATTAAAAATTTTAAA-AAAA
1 TAAATTTTAATAAAAAATTTAAATAAAA
68449510 TAAA
1 TAAA
68449514 AATTTGTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 6 0.23
27 16 0.62
28 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
TAAATTTTAATAAAAAATTTAAATAAAA
Found at i:68449523 original size:10 final size:10
Alignment explanation
Indices: 68449485--68449590 Score: 66
Period size: 10 Copynumber: 11.1 Consensus size: 10
68449475 TAAATATTAT
68449485 AAATTTATTAA
1 AAATTTA-TAA
68449496 AAATTT-TAA
1 AAATTTATAA
*
68449505 AAA--AATAA
1 AAATTTATAA
*
68449513 AAATTTGTAA
1 AAATTTATAA
*
68449523 AATTTTATAA
1 AAATTTATAA
68449533 AAATCTTA-AA
1 AAAT-TTATAA
68449543 AAA-TTAT-A
1 AAATTTATAA
*
68449551 AAATATAT-A
1 AAATTTATAA
*
68449560 GAA-TTATAAA
1 AAATTTAT-AA
*
68449570 AAAATTATAA
1 AAATTTATAA
*
68449580 AATTTTATAA
1 AAATTTATAA
68449590 A
1 A
68449591 GTCGTAAGAA
Statistics
Matches: 74, Mismatches: 12, Indels: 19
0.70 0.11 0.18
Matches are distributed among these distances:
8 16 0.22
9 12 0.16
10 33 0.45
11 13 0.18
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (10 bp):
AAATTTATAA
Found at i:68449542 original size:19 final size:19
Alignment explanation
Indices: 68449509--68449590 Score: 69
Period size: 19 Copynumber: 4.3 Consensus size: 19
68449499 TTTTAAAAAA
*
68449509 ATAAAAATTTGTAAAATTTT
1 ATAAAAA-TTATAAAATTTT
**
68449529 ATAAAAATCT-TAAAAAATT
1 ATAAAAAT-TATAAAATTTT
* *
68449548 AT-AAAATATATAGAATTAT
1 ATAAAAAT-TATAAAATTTT
*
68449567 AAAAAAATTATAAAATTTT
1 ATAAAAATTATAAAATTTT
68449586 ATAAA
1 ATAAA
68449591 GTCGTAAGAA
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
18 6 0.12
19 29 0.60
20 13 0.27
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (19 bp):
ATAAAAATTATAAAATTTT
Found at i:68449574 original size:38 final size:36
Alignment explanation
Indices: 68449466--68449571 Score: 103
Period size: 37 Copynumber: 2.9 Consensus size: 36
68449456 TAAATTTTAA
*
68449466 TAAAAAATT-T-AAATATTATAAATTTATTAAAAATTT
1 TAAAAAATTATAAAATA-TATAAATTTA-TAAAAATCT
* * *
68449502 TAAAAAAATA-AAAATTTGTAAAATTTTATAAAAATCT
1 TAAAAAATTATAAAATATAT-AAA-TTTATAAAAATCT
68449539 TAAAAAATTATAAAATATATAGAA-TTATAAAAA
1 TAAAAAATTATAAAATATATA-AATTTATAAAAA
68449572 AATTATAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
36 19 0.33
37 25 0.44
38 13 0.23
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (36 bp):
TAAAAAATTATAAAATATATAAATTTATAAAAATCT
Found at i:68449581 original size:38 final size:36
Alignment explanation
Indices: 68449465--68449590 Score: 98
Period size: 38 Copynumber: 3.4 Consensus size: 36
68449455 TTAAATTTTA
68449465 ATAAAAAATT-T-AAATATTATAAATTTATTAAAAATT
1 ATAAAAAATTATAAAATA-TATAAATTTA-TAAAAATT
* * * *
68449501 TTAAAAAAATA-AAAATTTGTAAAATTTTATAAAAATCT
1 ATAAAAAATTATAAAATATAT-AAA-TTTATAAAAAT-T
*
68449539 -TAAAAAATTATAAAATATATAGAATTATAAAAAAATT
1 ATAAAAAATTATAAAATATATA-AATT-TATAAAAATT
**
68449576 ATAAAATTTTATAAA
1 ATAAAAAATTATAAA
68449591 GTCGTAAGAA
Statistics
Matches: 71, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
36 10 0.14
37 27 0.38
38 34 0.48
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (36 bp):
ATAAAAAATTATAAAATATATAAATTTATAAAAATT
Found at i:68462858 original size:3 final size:3
Alignment explanation
Indices: 68462850--68462900 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
68462840 TACAATATTC
68462850 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
68462898 TAT
1 TAT
68462901 CTTTCTTCAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:68464063 original size:29 final size:30
Alignment explanation
Indices: 68464022--68464084 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
68464012 TCAGAAATTT
*
68464022 TTTTTAAAGAATAAAATTA-AATTGT-ATA
1 TTTTTAAAGAATAAAAATATAATTGTAATA
* *
68464050 TTTTTATAATAATAAAAATATAATTTTAATA
1 TTTTTA-AAGAATAAAAATATAATTGTAATA
68464081 TTTT
1 TTTT
68464085 AATATTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 6 0.21
29 11 0.38
30 5 0.17
31 7 0.24
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (30 bp):
TTTTTAAAGAATAAAAATATAATTGTAATA
Found at i:68464087 original size:14 final size:15
Alignment explanation
Indices: 68464068--68464109 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
68464058 ATAATAAAAA
68464068 TATAATTTTAATATT
1 TATAATTTTAATATT
*
68464083 T-TAATATTTATATCTT
1 TATAAT-TTTA-ATATT
68464099 TATAATTTTAA
1 TATAATTTTAA
68464110 AAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
14 4 0.17
15 6 0.26
16 9 0.39
17 4 0.17
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
TATAATTTTAATATT
Found at i:68464484 original size:21 final size:20
Alignment explanation
Indices: 68464449--68464503 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
68464439 TATCAGTATG
*
68464449 CAAAAA-TAATATTTCTCATAT
1 CAAAAATTAAT-TTTCT-AGAT
*
68464470 CAAAAATTGATTTTCTAGAT
1 CAAAAATTAATTTTCTAGAT
*
68464490 CAAAACTTAATTTT
1 CAAAAATTAATTTT
68464504 GAAAGCAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 15 0.52
21 11 0.38
22 3 0.10
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.40
Consensus pattern (20 bp):
CAAAAATTAATTTTCTAGAT
Found at i:68467137 original size:12 final size:12
Alignment explanation
Indices: 68467095--68467143 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
68467085 GCATTGCCTG
68467095 AATGAATAACAT
1 AATGAATAACAT
* **
68467107 AATGGATCCCACT
1 AATGAATAACA-T
68467120 -ATGAATAACAT
1 AATGAATAACAT
68467131 AATGAATAACAT
1 AATGAATAACAT
68467143 A
1 A
68467144 TTTCATGATG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
11 1 0.03
12 27 0.93
13 1 0.03
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.24
Consensus pattern (12 bp):
AATGAATAACAT
Found at i:68469240 original size:30 final size:30
Alignment explanation
Indices: 68469204--68469267 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
68469194 ATTTAAACCA
68469204 CAAAATTTTAAACATATAATTAAACCAAAT
1 CAAAATTTTAAACATATAATTAAACCAAAT
68469234 CAAAATTTTAAACATATAATTAAACCAAAT
1 CAAAATTTTAAACATATAATTAAACCAAAT
68469264 CAAA
1 CAAA
68469268 GTTGTAATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (30 bp):
CAAAATTTTAAACATATAATTAAACCAAAT
Found at i:68487603 original size:31 final size:31
Alignment explanation
Indices: 68487565--68487628 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
68487555 CTGGTCCATA
68487565 AATCTCTGACTGATATATTTCTTACGAAACT
1 AATCTCTGACTGATATATTTCTTACGAAACT
68487596 AATCTCTGACTGATATATTTCTTACGAAACT
1 AATCTCTGACTGATATATTTCTTACGAAACT
68487627 AA
1 AA
68487629 GTCTAAAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (31 bp):
AATCTCTGACTGATATATTTCTTACGAAACT
Found at i:68490284 original size:43 final size:43
Alignment explanation
Indices: 68490218--68490303 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
68490208 AAATCGTACA
*
68490218 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAACCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTAC-TCGTAAACACATATTG
68490261 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATTG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACTCGTAAACACATATTG
68490304 GAATCACATA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 3 0.08
43 35 0.90
44 1 0.03
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACTCGTAAACACATATTG
Found at i:68495816 original size:166 final size:166
Alignment explanation
Indices: 68495542--68495856 Score: 441
Period size: 166 Copynumber: 1.9 Consensus size: 166
68495532 TATGTTGTGG
* * * * * *
68495542 TACTTGACAGCTTGTGTGAGCAACACCGAGTAGCTATGTCGTGACTGATAGCTTGTGTGAGCAGG
1 TACTTGACAGCTTATGTGAACAACACCGAGTAGCTACGTCGTCACTGACAGCTTATGTGAGCAGG
*
68495607 CCCGTTAATGGCTCGAGAGTGAGAATATATGTCTTATGAGATAGAGGTAGCAATGGCTACATATG
66 CCCGTTAATGGCTCGAGAGCGAGAATATATGTCTTATGAGATAGAGGTAGCAATGGCTACATATG
** *
68495672 TGGTACCTTGTGTGTAATGGCTACATATGTTGCAGT
131 TGACACCTTGTGTGCAATGGCTACATATGTTGCAGT
* * * * *
68495708 TACTTGACAGCTTATGTGAATAGCACCGTGTAGCTACGTCTTCACTGACAGCTTATGTGAGTAGG
1 TACTTGACAGCTTATGTGAACAACACCGAGTAGCTACGTCGTCACTGACAGCTTATGTGAGCAGG
* * * * * *
68495773 CCTGTTGATGGCTTGAGAGCGAGCATATATGTGTTATGAGATAGAGGTAGCAATGGCTACATATT
66 CCCGTTAATGGCTCGAGAGCGAGAATATATGTCTTATGAGATAGAGGTAGCAATGGCTACATATG
68495838 TGACACCTTGTGTGCAATG
131 TGACACCTTGTGTGCAATG
68495857 TTTCCCAAGT
Statistics
Matches: 128, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
166 128 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (166 bp):
TACTTGACAGCTTATGTGAACAACACCGAGTAGCTACGTCGTCACTGACAGCTTATGTGAGCAGG
CCCGTTAATGGCTCGAGAGCGAGAATATATGTCTTATGAGATAGAGGTAGCAATGGCTACATATG
TGACACCTTGTGTGCAATGGCTACATATGTTGCAGT
Found at i:68507217 original size:151 final size:151
Alignment explanation
Indices: 68506950--68507339 Score: 618
Period size: 151 Copynumber: 2.6 Consensus size: 151
68506940 AAGGTCTCTG
* *
68506950 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
** * * * *
68507015 CACACTTAGCACTACACATGTGACTTAACCATCTGATACACGTAGTCGCCTGCACTTAGTATTAC
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
* *
68507080 ACAAGTGGTTGAAGTTAACGA
131 ACAAGTGATCGAAGTTAACGA
* * * *
68507101 GTACGCATAGTAGCTTGGACTTAGTACTACACATGCGACCTATCAATCTGGAACACGTAGCAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
*
68507166 TGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
* * *
68507231 ACACGTGATCGAAGTTAGCGG
131 ACAAGTGATCGAAGTTAACGA
68507252 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
68507317 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
68507340 TCGAATTTAA
Statistics
Matches: 217, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 217 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (151 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
ACAAGTGATCGAAGTTAACGA
Found at i:68507414 original size:151 final size:151
Alignment explanation
Indices: 68506950--68507586 Score: 571
Period size: 151 Copynumber: 4.2 Consensus size: 151
68506940 AAGGTCTCTG
*
68506950 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
* * * * * *
68507015 CACACTTAGCACTACACA--TG-T-GACTTAACCATCTGATACACGTAGTCGCCTGCACTTAGTA
66 TACACTTAGCACTACACACGTGATCGAATTTA--AT-GGATACACATAGTAGCCTGCACTTAGTA
* * *
68507076 TTACACAAGTGGTTGAA-GT-TAA-CGA
128 CTACAC-AGT-G--CAACCTATAATCGA
* * * * *
68507101 GTACGCATAGTAGCTTGGACTTAGTACTACACATGCGACCTATCAATCTGGAACACGTAGCAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
* * * ** * * *
68507166 TGCACTTAGTACTACACACGTGA-CTTAA-CCATTTGATACACGTAGTAGCCTGCACTTAGTACT
66 TACACTTAGCACTACACACGTGATC-GAATTTAATGGATACACATAGTAGCCTGCACTTAGTACT
* ** * * *
68507229 ACACACGTG-ATCGAAGTTAGCGG
130 ACACA-GTGCAACCTA-TAATCGA
*
68507252 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
* * * *
68507317 TGCACTTAGTACTACACACGTGATCGAATTTAATGGGTACGCATAGTAGCCTGCACTTAGTACTA
66 TACACTTAGCACTACACACGTGATCGAATTTAATGGATACACATAGTAGCCTGCACTTAGTACTA
*
68507382 CACA-TGCAACCTATCAATCTA
131 CACAGTGCAACCTAT-AATCGA
* * * * * * * * *
68507403 GTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCATCTGATACACGTAATAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
* ** * * ** * *
68507468 TACACTTAGCACTACACATGTGATCGACGTTAACGGGTATGCATAGTAGCTTGCACTAAGTACTA
66 TACACTTAGCACTACACACGTGATCGAATTTAATGGATACACATAGTAGCCTGCACTTAGTACTA
*
68507533 CACA-TGCGACCTATCAATCTG-
131 CACAGTGCAACCTAT-AATC-GA
*
68507554 GTACACGTAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
68507587 CGTGATTGAA
Statistics
Matches: 410, Mismatches: 61, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
147 1 0.00
148 1 0.00
150 7 0.02
151 362 0.88
152 35 0.09
153 2 0.00
154 1 0.00
155 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (151 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
TACACTTAGCACTACACACGTGATCGAATTTAATGGATACACATAGTAGCCTGCACTTAGTACTA
CACAGTGCAACCTATAATCGA
Found at i:68507457 original size:252 final size:252
Alignment explanation
Indices: 68507007--68507845 Score: 1318
Period size: 252 Copynumber: 3.3 Consensus size: 252
68506997 CTGGTACATG
** * * * * * * * *
68507007 TAGTAGCCCACACTTAGCACTACACATGTGACTTAACCATCTGATACACGTAGTCGCCTGCACTT
1 TAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
* * * * * * * *
68507072 AGTATTACACAAGTGGTTGAAGTTAACGAGTACGCATAGTAGCTTGGACTTAGTACTACACATGC
66 AGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
* * * *
68507137 GACCTATCAATCTGGAACACGTAGCAGCCTGCACTTAGTACTACACACGTGACTTAACCATTTGA
131 GACCTATCAATCTAGAACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCATCTGA
* * *
68507202 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAGCGGGTACGCA
196 TACACGTAATAGCCTACACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCA
*
68507259 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
*
68507324 AGTACTACACACGTGATCGAATTTAATGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
66 AGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
* *
68507389 AACCTATCAATCTAGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCATCTGA
131 GACCTATCAATCTAGAACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCATCTGA
* * * *
68507454 TACACGTAATAGCCTACACTTAGCACTACACATGTGATCGACGTTAACGGGTATGCA
196 TACACGTAATAGCCTACACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCA
*
68507511 TAGTAGCTTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
*
68507576 AGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCCGGCACTTAGTACTACACATGC
66 AGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
* * * *
68507641 GATCTATCAATCTAGCACACGTAGTAGCCTACAGTTAGTACTACACACGTGACTTAACCATCTAA
131 GACCTATCAATCTAGAACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCATCTGA
*
68507706 TACACGTAATAGCCTACACTTAGTACTACACACGTGATCGATGTTAACGGGTACGCA
196 TACACGTAATAGCCTACACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCA
68507763 TAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
68507828 AGTACTACACACGTGATT
66 AGTACTACACACGTGATT
68507846 CACAATGAAT
Statistics
Matches: 542, Mismatches: 45, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
252 542 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (252 bp):
TAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
GACCTATCAATCTAGAACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCATCTGA
TACACGTAATAGCCTACACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCA
Found at i:68507666 original size:151 final size:151
Alignment explanation
Indices: 68507162--68507838 Score: 557
Period size: 151 Copynumber: 4.5 Consensus size: 151
68507152 AACACGTAGC
* * * * * *
68507162 AGCCTGCACTTAGTACTACACACGTGA-CTTAACCATTTGATACACGTAGTAGCCTGCACTTAGT
1 AGCCTGCACTTAGTACTACACATGCGATC-TATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
* * ** * * ** * * * *
68507226 ACTACACACGTGATCGAAGT-TAGCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA
65 ACTACACATGCGA-CCTA-TCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
* * * * *
68507290 CCT--A-TCAATCTGGTACACGTAGT
128 -TTGAATTTAAT-GGGTACGCATAGT
* * * * * * *
68507313 AGCCTGCACTTAGTACTACACACGTGATCGAATTTAAT-GGGTACGCATAGTAGCCTGCACTTAG
1 AGCCTGCACTTAGTACTACACATGCGATC-TA-TCAATCTGGTACACGTAGTAGCCTGCACTTAG
* *
68507377 TACTACACATGCAACCTATCAATCTAGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGAC
64 TACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-
** * * * * *
68507442 TT-AA--CCATCTGATACACGTAAT
128 TTGAATTTAAT-GGGTACGCATAGT
* * * * * * ** * * *
68507464 AGCCTACACTTAGCACTACACATGTGATCGACGTTAA-CGGGTATGCATAGTAGCTTGCACTAAG
1 AGCCTGCACTTAGTACTACACATGCGATCTA--TCAATCTGGTACACGTAGTAGCCTGCACTTAG
*
68507528 TACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
64 TACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
68507593 TGAATTTAATGGGTACGCATAGT
129 TGAATTTAATGGGTACGCATAGT
* * * * *
68507616 AGCCGGCACTTAGTACTACACATGCGATCTATCAATCTAGCACACGTAGTAGCCTACAGTTAGTA
1 AGCCTGCACTTAGTACTACACATGCGATCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
* * * * * * * * *
68507681 CTACACACGTGACTTAACCATCTAATACACGTAATAGCCTACACTTAGTACTACACACGTGATCG
66 CTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTG
*
68507746 -ATGTTAACGGGTACGCATAGT
131 AAT-TTAATGGGTACGCATAGT
* *
68507767 AGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
1 AGCCTGCACTTAGTACTACACATGCGATCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
68507832 CTACACA
66 CTACACA
68507839 CGTGATTCAC
Statistics
Matches: 436, Mismatches: 79, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
150 9 0.02
151 353 0.81
152 70 0.16
153 4 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (151 bp):
AGCCTGCACTTAGTACTACACATGCGATCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
CTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTG
AATTTAATGGGTACGCATAGT
Found at i:68507767 original size:101 final size:100
Alignment explanation
Indices: 68506949--68507844 Score: 561
Period size: 101 Copynumber: 8.9 Consensus size: 100
68506939 GAAGGTCTCT
* * * ** *
68506949 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAATACACGTAGTAGC
** * * * *
68507014 CCACACTTAGCACTACACATGTGA-C-TTAACCATCT
66 CTGCACTTAGTACTACACACGTGATCATTTA--ATCG
* * * * * * * * * * *
68507049 GATACACGTAGTCGCCTGCACTTAGTATTACACAAGTG-GTTGAAGTTAA-CGAGTACGCATAGT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTT-AA--CAATCTAATACACGTAGT
* * * * * * *
68507112 AGCTTGGACTTAGTACTACACATGCGA-CCTATCAATCT
63 AGCCTGCACTTAGTACTACACACGTGATCAT-TTAATCG
* * * * * * *
68507150 GGAACACGTAGCAGCCTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAATACACGTAGTAGC
* *
68507215 CTGCACTTAGTACTACACACGTGATCGAAGTT-AGCG
66 CTGCACTTAGTACTACACACGTGATC--ATTTAATCG
* * * * **
68507251 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAATACACGTAGTAGC
68507316 CTGCACTTAGTACTACACACGTGATCGAATTTAAT-G
66 CTGCACTTAGTACTACACACGTGATC--ATTTAATCG
* ** * * *
68507352 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTAGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAATACACGTAGTAGC
* * *
68507417 CTGCAGTTAGTACTACACACGTGA-C-TTAACCATCT
66 CTGCACTTAGTACTACACACGTGATCATTTA--ATCG
* * * * * *** *
68507452 GATACACGTAATAGCCTACACTTAGCACTACACATGTGATCGACGTTAAC-GGGT-ATGCA--TA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACA--TG-T-GAC-TTAACAATCTAATACACGTA
* * * * * * *
68507513 GTAGCTTGCACTAAGTACTACACATGCGA-CCTATCAATCT
61 GTAGCCTGCACTTAGTACTACACACGTGATCAT-TTAATCG
* * * * * *
68507553 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TT--GAATTTAATGGGTACGCATAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAA----TACACGTAG
* * * * *
68507615 TAGCCGGCACTTAGTACTACACATGCGATC-TATCAATCT
62 TAGCCTGCACTTAGTACTACACACGTGATCAT-TTAATCG
* * * * * * * *
68507654 AGCACACGTAGTAGCCTACAGTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAATACACGTAGTAGC
*
68507719 CTACACTTAGTACTACACACGTGATCGATGTTAA-CG
66 CTGCACTTAGTACTACACACGTGATC-AT-TTAATCG
* * * * * **
68507755 GGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAATACACGTAGTAGC
68507820 CTGCACTTAGTACTACACACGTGAT
66 CTGCACTTAGTACTACACACGTGAT
68507845 TCACAATGAA
Statistics
Matches: 629, Mismatches: 132, Indels: 69
0.76 0.16 0.08
Matches are distributed among these distances:
94 1 0.00
95 3 0.00
97 5 0.01
98 1 0.00
99 7 0.01
100 125 0.20
101 452 0.72
102 17 0.03
103 7 0.01
104 8 0.01
105 3 0.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTAATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGATCATTTAATCG
Found at i:68508224 original size:18 final size:20
Alignment explanation
Indices: 68508193--68508239 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
68508183 AAGAATAGGT
*
68508193 TATATCATCAAAATAATCACA
1 TATAT-ATCAAATTAATCACA
*
68508214 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
68508233 TATATAT
1 TATATAT
68508240 ACTTACAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:68513931 original size:50 final size:50
Alignment explanation
Indices: 68513874--68514207 Score: 339
Period size: 50 Copynumber: 6.6 Consensus size: 50
68513864 CTGGTATGCA
* *
68513874 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * * ** * * * *
68513924 TAATAGCCTACACTTAGTACTACACATGTGATCAAAGTTAA-CGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGGTACACG
*
68513975 TAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * * * * *
68514025 TAGTAGCCTGCACTTAGTACTACACGCATGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* ** * * ** * * * *
68514075 TTGTAGCCTAAACTTAGTACTTCATACGTGATCGAAGTTAA-CAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGGTACACG
* *
68514126 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
68514176 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
68514208 TCACAACGAA
Statistics
Matches: 222, Mismatches: 56, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
49 6 0.03
50 144 0.65
51 68 0.31
52 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
Found at i:68514046 original size:101 final size:101
Alignment explanation
Indices: 68513866--68514049 Score: 323
Period size: 101 Copynumber: 1.8 Consensus size: 101
68513856 GAAGCTCTCT
* * *
68513866 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATGTAATAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACGTAATAGC
68513931 CTACACTTAGTACTACACATGTGATCAAAGTTAACG
66 CTACACTTAGTACTACACATGTGATCAAAGTTAACG
*
68513967 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACGTAATAGC
*
68514032 CTGCACTTAGTACTACAC
66 CTACACTTAGTACTACAC
68514050 GCATGACTTA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 78 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (101 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACGTAATAGC
CTACACTTAGTACTACACATGTGATCAAAGTTAACG
Found at i:68514168 original size:101 final size:100
Alignment explanation
Indices: 68514025--68514206 Score: 249
Period size: 101 Copynumber: 1.8 Consensus size: 100
68514015 CTGGTACACG
* * *
68514025 TAGTAGCCTGCACTTAGTACTACACGCATGACTTAACCATCTGATACACGTTGTAGCCTAAACTT
1 TAGTAGCCTGCACTTAGTACTACACGCA-GACCTAACAATCTGATACACGTAGTAGCCTAAACTT
* *
68514090 AGTACTTCATACGTGATCGAAGTTAACAGGTACGCA
65 AGTACTACACACGTGATCGAAGTTAACAGGTACGCA
* * **
68514126 TAGTAGCCTGCACTTAGTACTACACATGC-GACCTATCAATCTGGTACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACAC--GCAGACCTAACAATCTGATACACGTAGTAGCCTAAACT
68514190 TAGTACTACACACGTGA
64 TAGTACTACACACGTGA
68514207 CTCACAACGA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
101 68 0.97
103 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACGCAGACCTAACAATCTGATACACGTAGTAGCCTAAACTTA
GTACTACACACGTGATCGAAGTTAACAGGTACGCA
Found at i:68514208 original size:151 final size:151
Alignment explanation
Indices: 68513874--68514208 Score: 508
Period size: 151 Copynumber: 2.2 Consensus size: 151
68513864 CTGGTATGCA
* * * * * *
68513874 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATGTAATAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAATAGCCTAAACTT
* * *
68513939 AGTACTACACATGTGATCAAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGT
66 AGTACTACACACGTGATCAAAGTTAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGC
68514004 GACCTATCAATCTGGTACACG
131 GACCTATCAATCTGGTACACG
* * * **
68514025 TAGTAGCCTGCACTTAGTACTACACGCATGACTTAACCATCTGATACACGTTGTAGCCTAAACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAATAGCCTAAACTT
* * * *
68514090 AGTACTTCATACGTGATCGAAGTTAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
66 AGTACTACACACGTGATCAAAGTTAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGC
68514155 GACCTATCAATCTGGTACACG
131 GACCTATCAATCTGGTACACG
68514176 TAGTAGCCTGCACTTAGTACTACACACGTGACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT
68514209 CACAACGAAT
Statistics
Matches: 164, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
151 164 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAATAGCCTAAACTT
AGTACTACACACGTGATCAAAGTTAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGC
GACCTATCAATCTGGTACACG
Found at i:68514587 original size:18 final size:20
Alignment explanation
Indices: 68514556--68514602 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
68514546 AAGAATAGGT
*
68514556 TATATCATCAAAATAATCACA
1 TATAT-ATCAAATTAATCACA
*
68514577 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
68514596 TATATAT
1 TATATAT
68514603 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:68516975 original size:79 final size:81
Alignment explanation
Indices: 68516839--68517021 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
68516829 TCGAATGATG
* *
68516839 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
68516903 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
68516918 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
68516980 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
68516998 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68517022 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:68517037 original size:40 final size:40
Alignment explanation
Indices: 68516840--68517023 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
68516830 CGAATGATGT
* * * *
68516840 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
68516880 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
68516920 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68516958 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68516999 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
68517024 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:68517045 original size:79 final size:79
Alignment explanation
Indices: 68516892--68517056 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
68516882 GGACTAAGAT
* **
68516892 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
68516957 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
68516971 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
68517034 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
68517050 CCGAAGG
1 CCGAAGG
68517057 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:68524950 original size:40 final size:41
Alignment explanation
Indices: 68524894--68524995 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 41
68524884 TCGAATGATG
68524894 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAA
* * *
68524933 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAA
*
68524974 -CCGGGCTATGT-CCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68524996 TGAACGAGTA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
39 21 0.38
40 33 0.59
41 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAA
Found at i:68527058 original size:48 final size:47
Alignment explanation
Indices: 68526814--68527046 Score: 331
Period size: 48 Copynumber: 4.9 Consensus size: 47
68526804 AATGTGCCTG
* *
68526814 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCC-A
* *
68526862 TGTAAGACCATGTCTGGGACATGGCATCGGGGATGATATGTGTACCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
* * *
68526909 GTGTAAGACCATTTCTGGGACATGGCATCAGCGATGATATGTGGGCCA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
* * **
68526957 GTGTAAGACCATGTTTGGGGCATGGCATCGGTAATGATATGTGTGCCAA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCC-A
68527006 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGT
68527047 AGATTCATGT
Statistics
Matches: 163, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.01
48 161 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
Found at i:68533574 original size:46 final size:46
Alignment explanation
Indices: 68533507--68533865 Score: 205
Period size: 49 Copynumber: 7.6 Consensus size: 46
68533497 TATGTGTGCT
* *
68533507 AGTGTAGGACATGTCTGGGACATTCATCGGCCACATATTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATATTGAGAGCC
* * * * *
68533553 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGATAT-ACTAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATAT-TGA-GAGCC
* ** *
68533601 AGTGTAAGACATGTCTGGGACATGCATCGG-CA-TTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-A-TTGAGAGCC
* * * * *
68533647 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATTGA-GAGCC
* * * * * * * **
68533694 AGTGTAAGACCTGTCTGGGACATG--GC-GTCAGCTTGTTGTGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATATTGAGAGCC
* * *
68533738 AGTGTAAGACCTGACTGGGACATAGCATC-GACACCGATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCA-C-ATAT-TGAGAGCC
* * **
68533787 ACTGTAAGACATGTCTGGGACATGGCATCGGCCTCGATATGTG-GAAGTT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-ATAT-TGAG-AGCC
*
68533836 AGTGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
68533866 ACTTTGATGT
Statistics
Matches: 239, Mismatches: 55, Indels: 35
0.73 0.17 0.11
Matches are distributed among these distances:
44 28 0.12
45 3 0.01
46 63 0.26
47 39 0.16
48 37 0.15
49 67 0.28
50 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATATTGAGAGCC
Found at i:68533614 original size:48 final size:46
Alignment explanation
Indices: 68533507--68533717 Score: 217
Period size: 46 Copynumber: 4.5 Consensus size: 46
68533497 TATGTGTGCT
* * * * * *
68533507 AGTGTAGGACATGTCTGGGACATTCATCGGCCAC-ATATTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATT-ACAACC
* *
68533553 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGATATACTAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT-TAC-AACC
* * ** * * *
68533601 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATTACAACC
* *
68533647 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATTACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATTACAA-CC
*
68533694 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
68533718 GCGTCAGCTT
Statistics
Matches: 137, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
46 69 0.50
47 30 0.22
48 38 0.28
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATTACAACC
Found at i:68533656 original size:94 final size:93
Alignment explanation
Indices: 68533507--68533717 Score: 266
Period size: 94 Copynumber: 2.3 Consensus size: 93
68533497 TATGTGTGCT
* * **
68533507 AGTGTAGGACATGTCTGGGACATTCATCGGCCACATATTGAGAGCCAGTGTAAGACATGTCTAGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATAACGAGAGCCAGTGTAAGACATGTCTAGG
*
68533572 ACATGCATCGGCCTCAAGATATACTAA-CC
66 ACATGCATCAGCCTCAAGAT-TAC-AAGCC
* * *
68533601 AGTGTAAGACATGTCTGGGACATGCATCGG-CA-TTGAGACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-A-ACGAGAGCCAGTGTAAGACATGTCTA
* *
68533664 GGACATGCATCAGCCTCGAGATTACAAGCT
64 GGACATGCATCAGCCTCAAGATTACAAGCC
*
68533694 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
68533718 GCGTCAGCTT
Statistics
Matches: 103, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
92 3 0.03
93 30 0.29
94 70 0.68
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATAACGAGAGCCAGTGTAAGACATGTCTAGG
ACATGCATCAGCCTCAAGATTACAAGCC
Found at i:68541386 original size:48 final size:48
Alignment explanation
Indices: 68541278--68541489 Score: 184
Period size: 48 Copynumber: 4.5 Consensus size: 48
68541268 TATGTGTGCT
* * *
68541278 AGTGTAAGACATGTCTGGGAAATGCATCGAC--C-ACATATTGCGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATA-TACGAGCC
* * *
68541324 AGTGTAAGATATGTCTAGGACATGCATCGACATCGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATATACGAGCC
* * * ** *
68541372 AGTGTAAGACATGTCTGGGACATGGATCGGCATTGAGA-CGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATATACGAGCC
* * * * * *
68541418 AGTGTAAGACATGTCTAGGACATGCATC-AGCCTCAAAATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CATCGAGATATACGAGCC
* *
68541466 AGTGTAAGACCTATCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
68541490 GAGTCAACTT
Statistics
Matches: 132, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
46 61 0.46
47 2 0.02
48 65 0.49
49 4 0.03
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATATACGAGCC
Found at i:68541422 original size:94 final size:94
Alignment explanation
Indices: 68541319--68541491 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
68541309 CACATATTGC
* * * *
68541319 GAGCCAGTGTAAGATATGTCTAGGACATGCATC-GACATCGAGATATACCAGCCAGTGTAAGACA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCAG-CATCAAAATATACAAGCCAGTGTAAGACA
*
68541383 TGTCTGGGACATGGATCGGCATTGAGACGA
65 TATCTGGGACATGGATCGGCATTGAGACGA
* * * *
68541413 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCAAAATATACAAGCTAGTGTAAGACCT
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCAAAATATACAAGCCAGTGTAAGACAT
68541478 ATCTGGGACATGGA
66 ATCTGGGACATGGA
68541492 GTCAACTTGT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
94 68 0.99
95 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (94 bp):
GAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCAAAATATACAAGCCAGTGTAAGACAT
ATCTGGGACATGGATCGGCATTGAGACGA
Found at i:68541588 original size:142 final size:138
Alignment explanation
Indices: 68541372--68541642 Score: 323
Period size: 142 Copynumber: 1.9 Consensus size: 138
68541362 TATACCAGCC
* * * * *
68541372 AGTGTAAGACATGTCTGGGACATGGATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTAGG
1 AGTGAAAGACATGTCTGGGACATGGATCGACATTGAGACGAAAGCCAGTGTAAGACATATCTAGG
*
68541437 ACATGCATCAGCCTCAAAATATACAAG-CTAGTGTAAGACCTATCTGGGACATGG-AGTCAACTT
66 ACAGGCATCAGCCTCAAAATATACAAGTC-AGTGTAAGACCTATCTGGGACATGGCA-TCAACTT
68541500 GTTGTGTGTG
129 GTTGTGTGTG
* * *
68541510 AGTGAAAGACCTGTCTGGGACATGGCATCGACACCGTT-AGATGAAAGCCAGTGTAAGACCTATC
1 AGTGAAAGACATGTCTGGGACATGG-ATCGACA---TTGAGACGAAAGCCAGTGTAAGACATATC
** * * * *
68541574 TAGGACACGGCATCAGCCTTGATATATAGAAGTCGGTGTAAGACCTGTCTGGGACATGGCATCAA
62 TAGGACA-GGCATCAGCCTCAAAATATACAAGTCAGTGTAAGACCTATCTGGGACATGGCATCAA
68541639 CTTG
126 CTTG
68541643 ACATGGCATC
Statistics
Matches: 111, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
138 23 0.21
139 6 0.05
141 28 0.25
142 52 0.47
143 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (138 bp):
AGTGAAAGACATGTCTGGGACATGGATCGACATTGAGACGAAAGCCAGTGTAAGACATATCTAGG
ACAGGCATCAGCCTCAAAATATACAAGTCAGTGTAAGACCTATCTGGGACATGGCATCAACTTGT
TGTGTGTG
Found at i:68541647 original size:16 final size:16
Alignment explanation
Indices: 68541626--68541657 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
68541616 ACCTGTCTGG
68541626 GACATGGCATCAACTT
1 GACATGGCATCAACTT
68541642 GACATGGCATCAACTT
1 GACATGGCATCAACTT
68541658 TGATGTGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (16 bp):
GACATGGCATCAACTT
Found at i:68543366 original size:20 final size:20
Alignment explanation
Indices: 68543337--68543380 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
68543327 TAAATTAAAT
68543337 ACAT-AATGTAGCCATTTAA
1 ACATGAATGTAGCCATTTAA
68543356 ACATGAATGTAGCCATTTAA
1 ACATGAATGTAGCCATTTAA
68543376 ACATG
1 ACATG
68543381 TAGATAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (20 bp):
ACATGAATGTAGCCATTTAA
Found at i:68550923 original size:54 final size:54
Alignment explanation
Indices: 68550840--68550962 Score: 201
Period size: 54 Copynumber: 2.3 Consensus size: 54
68550830 CTTGTTGGTG
* *
68550840 AAAACCATTTTTTAAGTTAAACCCATTCCGTTATTACATCTGAAATTAACTTATC
1 AAAA-CATTTGTTATGTTAAACCCATTCCGTTATTACATCTGAAATTAACTTATC
*
68550895 AAAACATTTGTTATGTTAAACCCATTCCGTTATTACATTTGAAATTAACTTATC
1 AAAACATTTGTTATGTTAAACCCATTCCGTTATTACATCTGAAATTAACTTATC
*
68550949 AAAACGTTTGTTAT
1 AAAACATTTGTTAT
68550963 CTTTGATTAC
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
54 60 0.94
55 4 0.06
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.40
Consensus pattern (54 bp):
AAAACATTTGTTATGTTAAACCCATTCCGTTATTACATCTGAAATTAACTTATC
Found at i:68571398 original size:42 final size:42
Alignment explanation
Indices: 68571256--68571409 Score: 111
Period size: 42 Copynumber: 3.7 Consensus size: 42
68571246 TACCACACCA
* * * ** * *
68571256 ATGCCATATCCCAGATATGGTCTTATA-TAGGTTCTCATTTTG
1 ATGCCATATCCTAGATATGGTCTTACACGA-AATCTCATATCG
* * *
68571298 ATGCCAATAGCCTAGCTATGATC-TACACGAAATCTCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACACGAAATCTCATATCG
* *
68571340 ATGCCATAT-GTCAGATATGGTCTTACATGAAATCTCATAAT-G
1 ATGCCATATCCT-AGATATGGTCTTACACGAAATCTCAT-ATCG
*
68571382 ATGTCATATCCTAGATAT-GTCGTTACAC
1 ATGCCATATCCTAGATATGGTC-TTACAC
68571410 ATAGTCTCGA
Statistics
Matches: 87, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.01
41 14 0.16
42 55 0.63
43 17 0.20
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGAAATCTCATATCG
Found at i:68582596 original size:27 final size:27
Alignment explanation
Indices: 68582518--68582588 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
68582508 ATAAATACCT
* *
68582518 CATATAGGGGCAAAATAGTCATCTTAC
1 CATATAAGGGCAAAATAGTCATTTTAC
* *
68582545 CACATACGGGCAAAATAGTCATTTTAC
1 CATATAAGGGCAAAATAGTCATTTTAC
68582572 CATATAAGGGCAAAATA
1 CATATAAGGGCAAAATA
68582589 ATAATTTTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (27 bp):
CATATAAGGGCAAAATAGTCATTTTAC
Found at i:68584731 original size:27 final size:27
Alignment explanation
Indices: 68584692--68584765 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
68584682 TCTAAGATTT
*
68584692 TTATGTTATATTTTAATTATATAATCAA
1 TTAT-TTAGATTTTAATTATATAATCAA
68584720 TTATTTAGATTTTAATTATATAATCAA
1 TTATTTAGATTTTAATTATATAATCAA
* *
68584747 TTATTTAGATATAAATTAT
1 TTATTTAGATTTTAATTAT
68584766 GTTAAATTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
27 39 0.91
28 4 0.09
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.53
Consensus pattern (27 bp):
TTATTTAGATTTTAATTATATAATCAA
Found at i:68592715 original size:28 final size:28
Alignment explanation
Indices: 68592675--68592734 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
68592665 GAATTATTCG
* *
68592675 ATATTTTGCACACTAAGTGTC-GTTCTCA
1 ATATCTTGCACACTAAGTG-CAATTCTCA
68592703 ATATCTTGCACACTAAGTGCAATTCTCA
1 ATATCTTGCACACTAAGTGCAATTCTCA
68592731 ATAT
1 ATAT
68592735 TTCGTACACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.37
Consensus pattern (28 bp):
ATATCTTGCACACTAAGTGCAATTCTCA
Found at i:68592743 original size:28 final size:26
Alignment explanation
Indices: 68592679--68592750 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 26
68592669 TATTCGATAT
*
68592679 TTTGCACACTAAGTGTCGTTCTCAATA
1 TTTGCACACTAAGTG-CATTCTCAATA
68592706 TCTTGCACACTAAGTGCAATTCTCAATA
1 T-TTGCACACTAAGTGC-ATTCTCAATA
* *
68592734 TTTCGTACACTGAGTGC
1 TTT-GCACACTAAGTGC
68592751 CATATTTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 4 0.10
28 35 0.90
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (26 bp):
TTTGCACACTAAGTGCATTCTCAATA
Found at i:68594758 original size:43 final size:43
Alignment explanation
Indices: 68594705--68594788 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
68594695 TGAGATTACA
* *
68594705 TGTACGACCATGTATGGGACATTGGCATCATTATATGATTTCG
1 TGTAAGACCATGTATGGGACATTAGCATCATTATATGATTTCG
* *
68594748 TGTAAGACCATGTCTGGGACATTAGCATCGTTATATGATTT
1 TGTAAGACCATGTATGGGACATTAGCATCATTATATGATTT
68594789 TGTATAAGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (43 bp):
TGTAAGACCATGTATGGGACATTAGCATCATTATATGATTTCG
Found at i:68597755 original size:15 final size:16
Alignment explanation
Indices: 68597726--68597776 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 16
68597716 TGGTAATGAG
*
68597726 TTATTGGAATGTTA-TA
1 TTATT-GAATTTTATTA
68597742 TTATTGAATTTTATTA
1 TTATTGAATTTTATTA
68597758 TTTATT--ATTTTATTA
1 -TTATTGAATTTTATTA
68597773 TTAT
1 TTAT
68597777 AATTATTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 4 0.12
15 16 0.50
16 7 0.22
17 5 0.16
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (16 bp):
TTATTGAATTTTATTA
Found at i:68597758 original size:3 final size:3
Alignment explanation
Indices: 68597752--68597800 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
68597742 TTATTGAATT
* *
68597752 TTA TTA TTTA TTA TT- TTA TTA TTA TAA TTA TTA TT- TT- TTA TCA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68597795 TTA TTA
1 TTA TTA
68597801 ATTCAATTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 6 0.15
3 30 0.77
4 3 0.08
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:68597785 original size:15 final size:14
Alignment explanation
Indices: 68597748--68597786 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
68597738 TATATTATTG
68597748 AATTTTATTATTTAT
1 AATTTTATTA-TTAT
*
68597763 TATTTTATTATTAT
1 AATTTTATTATTAT
68597777 AATTATTATT
1 AATT-TTATT
68597787 TTTTATCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
AATTTTATTATTAT
Found at i:68599249 original size:9 final size:10
Alignment explanation
Indices: 68599228--68599252 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
68599218 ATTCTAAAAT
68599228 AAAATTTTAA
1 AAAATTTTAA
68599238 AAAATTTTAA
1 AAAATTTTAA
68599248 AAAAT
1 AAAAT
68599253 AAAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:68601295 original size:16 final size:16
Alignment explanation
Indices: 68601274--68601325 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
68601264 TTTGGTTCGC
68601274 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
68601290 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
68601306 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
68601322 TGTA
1 TGTA
68601326 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:68601372 original size:45 final size:44
Alignment explanation
Indices: 68601306--68601400 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 44
68601296 GGATTAGAGG
* * *
68601306 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGAAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
68601351 TGTAATGAAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGAAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
68601395 TGTAAT
1 TGTAAT
68601401 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (44 bp):
TGTAATGAAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:68601570 original size:25 final size:25
Alignment explanation
Indices: 68601538--68601592 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
68601528 TAATTTAATC
*
68601538 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
68601562 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
68601587 ATATAT
1 ATATAT
68601593 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:68601773 original size:47 final size:46
Alignment explanation
Indices: 68601722--68601882 Score: 140
Period size: 47 Copynumber: 3.6 Consensus size: 46
68601712 GATTTAATAA
68601722 AATTTAAAATAATTATAACTAATAAATTATCTTATATGAATTTGTAT
1 AATTTAAAATAATTATAA-TAATAAATTATCTTATATGAATTTGTAT
* * * * *
68601769 AATTTAAAATAATTATTATTACATATAAT-TTA-AT-AA---GATAT
1 AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTG-TAT
* * * *
68601810 AATTTCATAA-AATTATTGATAATAAATTTTCTTATATGAATTTATAT
1 AATTT-AAAATAATTA-TAATAATAAATTATCTTATATGAATTTGTAT
68601857 AATTTAAAATAATT-TATATAATAAAT
1 AATTTAAAATAATTATA-ATAATAAAT
68601883 CTATTGTATA
Statistics
Matches: 88, Mismatches: 15, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
40 1 0.01
41 13 0.15
42 11 0.12
43 5 0.06
44 4 0.05
45 6 0.07
46 19 0.22
47 29 0.33
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (46 bp):
AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTGTAT
Found at i:68607126 original size:31 final size:32
Alignment explanation
Indices: 68607069--68607144 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 32
68607059 TGATTAGGTT
* * **
68607069 AGGACTAAAATT-TCAAATTTTGAAAAGTAGG
1 AGGACTAAAATTGACAAATTTTAAAAAGTAAA
*
68607100 AGGACTAAAATTGACCAA-TTTAAAAAGTAAA
1 AGGACTAAAATTGACAAATTTTAAAAAGTAAA
*
68607131 AAGACTAAAATTGA
1 AGGACTAAAATTGA
68607145 TTAAATTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 35 0.92
32 3 0.08
ACGTcount: A:0.51, C:0.08, G:0.16, T:0.25
Consensus pattern (32 bp):
AGGACTAAAATTGACAAATTTTAAAAAGTAAA
Found at i:68607154 original size:31 final size:29
Alignment explanation
Indices: 68607102--68607168 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
68607092 AAAGTAGGAG
*
68607102 GACTAAAATTGACCAATTTAAAAAGTAAAAA
1 GACTAAAATTGACCAAATT--AAAGTAAAAA
** *
68607133 GACTAAAATTGATTAAATTAAAGTATAAA
1 GACTAAAATTGACCAAATTAAAGTAAAAA
68607162 GACTAAA
1 GACTAAA
68607169 TCTTTAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.25
Consensus pattern (29 bp):
GACTAAAATTGACCAAATTAAAGTAAAAA
Found at i:68614128 original size:13 final size:13
Alignment explanation
Indices: 68614110--68614134 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68614100 AAATCACTTG
68614110 AAAACTCATATCT
1 AAAACTCATATCT
68614123 AAAACTCATATC
1 AAAACTCATATC
68614135 CACCTTCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAACTCATATCT
Found at i:68614465 original size:21 final size:21
Alignment explanation
Indices: 68614435--68614488 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
68614425 TATGGTTCAA
* *
68614435 ACATGGCTGTGTGGCCATTCC
1 ACATGCCTGTGTGGCCACTCC
* *
68614456 ACATGTCTGTGTGGCTACTCC
1 ACATGCCTGTGTGGCCACTCC
*
68614477 ACACGCCTGTGT
1 ACATGCCTGTGT
68614489 ACGTTGGCTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.15, C:0.30, G:0.26, T:0.30
Consensus pattern (21 bp):
ACATGCCTGTGTGGCCACTCC
Found at i:68616045 original size:37 final size:36
Alignment explanation
Indices: 68615975--68616045 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 36
68615965 AGTACACAAG
* *
68615975 TAATCCAACCGAAACATGTCAAATGCTCATAAGAGC
1 TAATCCAACCGAAACATGCCAAATGCCCATAAGAGC
*
68616011 TAATCCAACCGATAACATGCCAAATGCCCCTAAGA
1 TAATCCAACCGA-AACATGCCAAATGCCCATAAGA
68616046 AACTGATAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
36 12 0.39
37 19 0.61
ACGTcount: A:0.41, C:0.28, G:0.13, T:0.18
Consensus pattern (36 bp):
TAATCCAACCGAAACATGCCAAATGCCCATAAGAGC
Found at i:68617061 original size:11 final size:11
Alignment explanation
Indices: 68617044--68617073 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
68617034 TTATTCTTCA
68617044 ATTTAATTTTG
1 ATTTAATTTTG
*
68617055 TTTTAATTTTG
1 ATTTAATTTTG
68617066 ATTTAATT
1 ATTTAATT
68617074 ACAAAATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (11 bp):
ATTTAATTTTG
Found at i:68622809 original size:18 final size:18
Alignment explanation
Indices: 68622771--68622817 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
68622761 TTTGAAATTT
*
68622771 ATAAATTCTTTGTTCAAAA
1 ATAAATT-TTTATTCAAAA
*
68622790 ATAAATTTTTATTGAAAA
1 ATAAATTTTTATTCAAAA
68622808 ATAAATTTTT
1 ATAAATTTTT
68622818 TTGTTATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (18 bp):
ATAAATTTTTATTCAAAA
Found at i:68632799 original size:44 final size:44
Alignment explanation
Indices: 68632734--68632819 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
68632724 ATTACATATA
* * **
68632734 TCGCATCCATAATGAACTCGGACCAACTCAATGAGCTCGGATGC
1 TCGCATCCATAATGAAATCGGACCAAATCAACAAGCTCGGATGC
*
68632778 TCGCATCTATAATGAAATCGGACCAAATCAACAAGCTCGGAT
1 TCGCATCCATAATGAAATCGGACCAAATCAACAAGCTCGGAT
68632820 ACCTCATACA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.21
Consensus pattern (44 bp):
TCGCATCCATAATGAAATCGGACCAAATCAACAAGCTCGGATGC
Done.