Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 219 of 325
Found at i:68646433 original size:31 final size:31
Alignment explanation
Indices: 68646395--68646473 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
68646385 TTTAACAGTT
68646395 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* * *
68646426 ACTGGGCCAAATCCTTGTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
68646457 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
68646474 ACTGTAAACG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:68646542 original size:42 final size:42
Alignment explanation
Indices: 68646495--68646588 Score: 161
Period size: 42 Copynumber: 2.2 Consensus size: 42
68646485 TATGGCCCTT
* * *
68646495 AAGCCCATTTCAATATCACATGTAATGCCAATGGATGTATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
68646537 AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
68646579 AAGCCCATTT
1 AAGCCCATTT
68646589 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
Found at i:68646798 original size:26 final size:26
Alignment explanation
Indices: 68646721--68646882 Score: 224
Period size: 26 Copynumber: 6.3 Consensus size: 26
68646711 CTAGAGGCCT
68646721 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
68646745 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
68646770 AGCCCTTTTTAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
68646796 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** *
68646822 AGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
68646848 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
68646874 AGCCCTTTT
1 AGCCCTTTT
68646883 GCACTTCCTC
Statistics
Matches: 123, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 5 0.04
24 5 0.04
25 32 0.26
26 81 0.66
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:68647767 original size:27 final size:26
Alignment explanation
Indices: 68647688--68647784 Score: 113
Period size: 27 Copynumber: 3.6 Consensus size: 26
68647678 TATTCGTCAT
* *
68647688 TTTACCATACAGGGGTATTACGGTCAC
1 TTTACCTTACAGGGGT-TTACGGTCTC
*
68647715 TTTACCCTACAGGGGTTTTACGGTCTC
1 TTTACCTTACAGGGG-TTTACGGTCTC
*
68647742 TTTACCTTACAGGGGCTTTACGGTCTT
1 TTTACCTTACAGGGG-TTTACGGTCTC
* *
68647769 TTTACCTAATAGGGGT
1 TTTACCTTACAGGGGT
68647785 ATTTTAGTCA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.02
27 60 0.97
28 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (26 bp):
TTTACCTTACAGGGGTTTACGGTCTC
Found at i:68647858 original size:27 final size:27
Alignment explanation
Indices: 68647805--68648164 Score: 260
Period size: 27 Copynumber: 13.3 Consensus size: 27
68647795 TTTCATCCTA
* * * *
68647805 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
68647832 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** *
68647859 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-T
* **
68647888 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* *
68647915 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * *
68647942 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
68647968 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
68647995 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
** * * *
68648023 TGAGAGTATTTTTGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
68648050 CAAGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
68648076 CTAGGGTATTTTGGTAATTTTACTAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
68648103 CAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
68648130 CGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
68648157 CGAGGGTA
1 CAAGGGTA
68648165 AAATAGTAAT
Statistics
Matches: 266, Mismatches: 59, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
26 24 0.09
27 215 0.81
28 14 0.05
29 13 0.05
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:68648010 original size:81 final size:81
Alignment explanation
Indices: 68647915--68648150 Score: 305
Period size: 81 Copynumber: 2.9 Consensus size: 81
68647905 CTTTGTAAAT
* *
68647915 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CTAGTGGTATT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAAG-GGTATT
* *
68647979 TTGGTAATTTTACAAAC
65 TTAGCAATTTTACAAAC
* * *
68647996 TAGGGGTATTTTGGTAATTTTACAAATTGAGAGTATTTTTGTAATTTTACAAACCAAGGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAAGGGTATTT
*
68648061 TAGCAATTTTACAGAC
66 TAGCAATTTTACAAAC
* ** *** *
68648077 TA-GGGTATTTTGGTAATTTTACTAATCAAGGGTATTTTGGTAATTTTGTAAACCGAGGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAAGGGTATTT
*
68648141 TAGTAATTTT
66 TAGCAATTTT
68648151 GTAAATCGAG
Statistics
Matches: 137, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
80 63 0.46
81 71 0.52
82 3 0.02
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAAGGGTATTT
TAGCAATTTTACAAAC
Found at i:68648171 original size:27 final size:27
Alignment explanation
Indices: 68648116--68648272 Score: 170
Period size: 27 Copynumber: 5.8 Consensus size: 27
68648106 GGGTATTTTG
* ****
68648116 GTAATTTTGTAAACCGAGGGTATTTTA
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
68648143 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* **
68648170 GTAATTGTGTAAATTAAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
68648197 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
68648224 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
68648251 GTAATTCTATAAATCGAGGGTA
1 GTAATTTTGTAAATCGAGGGTA
68648273 CTTTGGTAAT
Statistics
Matches: 111, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:68648309 original size:54 final size:54
Alignment explanation
Indices: 68647918--68648311 Score: 220
Period size: 54 Copynumber: 7.3 Consensus size: 54
68647908 TGTAAATTAG
** * * * * *
68647918 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACT-A
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAATTGA
** * *
68647971 GTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTCAGTAATTTTATAAATCGA-GGGTATTTTGGTAATTTTACAAATTGA
* ** * * * * * * *
68648026 GAGTATTTTTGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACT-A
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAATTGA
** * ** **
68648079 GGGTATTTTGGTAATTTTACT-AATCAAGGGTATTTTGGTAATTTTGTAAACCGA
1 GGGTATTTCAGTAATTTTA-TAAATCGAGGGTATTTTGGTAATTTTACAAATTGA
* * *** * * ** *
68648133 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTGTGTAAATTAA
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAATTGA
*** * **** ** **
68648187 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAA
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAATTGA
*** * * * *
68648241 GGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAATTTGA
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAATTGA
68648295 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
68648312 GGTAAACTAA
Statistics
Matches: 276, Mismatches: 58, Indels: 13
0.80 0.17 0.04
Matches are distributed among these distances:
53 45 0.16
54 227 0.82
55 4 0.01
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTACAAATTGA
Found at i:68666194 original size:55 final size:55
Alignment explanation
Indices: 68666120--68666223 Score: 181
Period size: 55 Copynumber: 1.9 Consensus size: 55
68666110 TGCCCTTAGT
* *
68666120 TCGTGTACAACACTGACTTTTAAACACGGCCATGGCACATGCCCGTGTGGCCTAC
1 TCGTGTACAACACTAACTTTTAAACACGGCCATGGCACACGCCCGTGTGGCCTAC
*
68666175 TCGTGTACAATACTAACTTTTAAACACGGCCATGGCACACGCCCGTGTG
1 TCGTGTACAACACTAACTTTTAAACACGGCCATGGCACACGCCCGTGTG
68666224 TCCAACCATG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (55 bp):
TCGTGTACAACACTAACTTTTAAACACGGCCATGGCACACGCCCGTGTGGCCTAC
Found at i:68679772 original size:15 final size:16
Alignment explanation
Indices: 68679736--68679773 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
68679726 ATTATTTTCT
68679736 TTTTCATTTAATTAAA
1 TTTTCATTTAATTAAA
*
68679752 TTTTCATTTAA-TAAC
1 TTTTCATTTAATTAAA
68679767 TTTTCAT
1 TTTTCAT
68679774 CTTTCTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTTCATTTAATTAAA
Found at i:68680732 original size:20 final size:20
Alignment explanation
Indices: 68680707--68680748 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
68680697 AGAATTTTTA
68680707 GAGCTCAAATAGGGGAATAT
1 GAGCTCAAATAGGGGAATAT
68680727 GAGCTCAAATAGGGGAATAT
1 GAGCTCAAATAGGGGAATAT
68680747 GA
1 GA
68680749 CTGTATCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.31, T:0.19
Consensus pattern (20 bp):
GAGCTCAAATAGGGGAATAT
Found at i:68689712 original size:39 final size:39
Alignment explanation
Indices: 68689669--68689805 Score: 141
Period size: 41 Copynumber: 3.4 Consensus size: 39
68689659 TTTTAAAATT
68689669 CAGAGCAATAGCGGCGTTCTAAAAAAATGCCGCTAAAAA
1 CAGAGCAATAGCGGCGTTCTAAAAAAATGCCGCTAAAAA
* *
68689708 CAGAGCAACAGCGGCGTTTTAGTAAAAAATGCCGCTAAAAA
1 CAGAGCAATAGCGGCGTTCTA--AAAAAATGCCGCTAAAAA
* * ** * *
68689749 CAGAGCATTAGCAGCGCTTTCT-GTAAAACGCCGCTAAAAGC
1 CAGAGCAATAGC-G-GCGTTCTAAAAAAATGCCGCTAAAA-A
*
68689790 CAGAGCATTAGCGGCG
1 CAGAGCAATAGCGGCG
68689806 CTTTCTGTAA
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
39 21 0.26
40 15 0.18
41 40 0.49
42 1 0.01
43 5 0.06
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (39 bp):
CAGAGCAATAGCGGCGTTCTAAAAAAATGCCGCTAAAAA
Found at i:68689794 original size:41 final size:41
Alignment explanation
Indices: 68689733--68689992 Score: 405
Period size: 41 Copynumber: 6.4 Consensus size: 41
68689723 GTTTTAGTAA
* * * *
68689733 AAAATGCCGCTAAAA-ACAGAGCATTAGCAGCGCTTTCTGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
*
68689773 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCTGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
* *
68689814 AAAACGCTGCTAAAAGCCAGAGCATTAGCGGCGCTTTCTGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
68689855 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
* * *
68689896 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCACGTTAGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
* *
68689937 AAAACGCAGCTAAAAGCCAGAGCATTAGCAGCGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
68689978 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
68689993 ATCTCATAAC
Statistics
Matches: 204, Mismatches: 15, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
40 14 0.07
41 190 0.93
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
Found at i:68691028 original size:15 final size:15
Alignment explanation
Indices: 68691008--68691039 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
68690998 TTTAATTTAG
*
68691008 AAGATAAATGTATAT
1 AAGATAAATATATAT
68691023 AAGATAAATATATAT
1 AAGATAAATATATAT
68691038 AA
1 AA
68691040 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:68695617 original size:15 final size:15
Alignment explanation
Indices: 68695573--68695628 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
68695563 AACGACATGT
*
68695573 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
68695589 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
68695602 ATATTATTTAATTAA
1 ATATTATTTAATTAA
68695617 ATATTATTTAAT
1 ATATTATTTAAT
68695629 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 16 0.46
16 4 0.11
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:68695775 original size:9 final size:9
Alignment explanation
Indices: 68695734--68696002 Score: 177
Period size: 9 Copynumber: 29.4 Consensus size: 9
68695724 ATTTGATATC
*
68695734 ATAATTTAT
1 ATAACTTAT
*
68695743 ATAACTTAC
1 ATAACTTAT
* *
68695752 AAAACGTCA-
1 ATAAC-TTAT
68695761 ATAACTTAT
1 ATAACTTAT
68695770 ATAACTTAT
1 ATAACTTAT
*
68695779 ATAACTTAC
1 ATAACTTAT
68695788 ATAACTTAT
1 ATAACTTAT
*
68695797 ATAACATAT
1 ATAACTTAT
*
68695806 ATAACTTAC
1 ATAACTTAT
68695815 ATAACTTAT
1 ATAACTTAT
* *
68695824 ATAACATAC
1 ATAACTTAT
68695833 ATAACTTAT
1 ATAACTTAT
68695842 ATAACTTAT
1 ATAACTTAT
*
68695851 ATAACTTAG
1 ATAACTTAT
*
68695860 ATAA-ATAT
1 ATAACTTAT
*
68695868 ATAACTTAC
1 ATAACTTAT
*
68695877 ATAACTTAC
1 ATAACTTAT
68695886 ATAATACTTAAT
1 AT-A-ACTT-AT
**
68695898 ATATTTTATAT
1 ATA-ACT-TAT
* *
68695909 CATAATTTAC
1 -ATAACTTAT
*
68695919 ATAACTTAC
1 ATAACTTAT
*
68695928 ATAACTTAG
1 ATAACTTAT
*
68695937 ATAACTTAG
1 ATAACTTAT
*
68695946 ATAA-ATAT
1 ATAACTTAT
* *
68695954 ATAATTTAC
1 ATAACTTAT
*
68695963 ATAA-ATAT
1 ATAACTTAT
* *
68695971 ATATCATAT
1 ATAACTTAT
* *
68695980 CATAAATTAC
1 -ATAACTTAT
*
68695990 ATAACTTAC
1 ATAACTTAT
68695999 ATAA
1 ATAA
68696003 TACTTAAATA
Statistics
Matches: 209, Mismatches: 40, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
8 19 0.09
9 162 0.78
10 10 0.05
11 11 0.05
12 7 0.03
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:68695791 original size:27 final size:27
Alignment explanation
Indices: 68695733--68695949 Score: 197
Period size: 27 Copynumber: 7.9 Consensus size: 27
68695723 TATTTGATAT
* * *
68695733 CATAATTTATATAACTTACAAAACGT-
1 CATAACTTATATAACTTACATAACTTA
*
68695759 CAATAACTTATATAACTTATATAACTTA
1 C-ATAACTTATATAACTTACATAACTTA
* *
68695787 CATAACTTATATAACATATATAACTTA
1 CATAACTTATATAACTTACATAACTTA
*
68695814 CATAACTTATATAACATACATAACTTA
1 CATAACTTATATAACTTACATAACTTA
* * *
68695841 TATAACTTATATAACTTAGATAA-ATA
1 CATAACTTATATAACTTACATAACTTA
* *
68695867 TATAACTTACATAACTTACATAATACTTA
1 CATAACTTATATAACTTACAT-A-ACTTA
* *
68695896 -ATATATTTTATATCATAATTTACATAACTTA
1 CATA-A--CT-TAT-ATAACTTACATAACTTA
* *
68695927 CATAACTTAGATAACTTAGATAA
1 CATAACTTATATAACTTACATAA
68695950 ATATATAATT
Statistics
Matches: 160, Mismatches: 20, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
26 22 0.14
27 104 0.65
28 7 0.04
29 4 0.03
31 7 0.04
32 6 0.04
33 10 0.06
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.38
Consensus pattern (27 bp):
CATAACTTATATAACTTACATAACTTA
Found at i:68695929 original size:113 final size:114
Alignment explanation
Indices: 68695806--68696026 Score: 295
Period size: 113 Copynumber: 1.9 Consensus size: 114
68695796 TATAACATAT
* * * *
68695806 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATA-AATAT-A
1 ATAACTTACATAACTTAGATAACATACATAA-ATATATAACTTACATAA-ATAGATATAATATCA
* * *
68695869 TAACTTACATAACTTACATAATACTT-AATATATTTTATATCATAATTTAC
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
68695919 ATAACTTACATAACTTAGATAACTTAGATAAATATATAATTTACATAAATATATATCATATCATA
1 ATAACTTACATAACTTAGATAACATACATAAATATATAACTTACATAAATAGATATAATATCATA
68695984 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
68696027 CATAACTAGT
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
111 5 0.05
112 18 0.19
113 54 0.58
114 16 0.17
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (114 bp):
ATAACTTACATAACTTAGATAACATACATAAATATATAACTTACATAAATAGATATAATATCATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:68701989 original size:31 final size:31
Alignment explanation
Indices: 68701943--68702009 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
68701933 TGGTTGTATT
* *
68701943 TTTTATGTTAAATTTGATGTTTTTGGCTGCA
1 TTTTATATTAAATTTGATGTATTTGGCTGCA
* * * *
68701974 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGATGTATTTGGCTGCA
68702005 TTTTA
1 TTTTA
68702010 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.19, C:0.03, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGATGTATTTGGCTGCA
Found at i:68702108 original size:43 final size:42
Alignment explanation
Indices: 68702061--68702330 Score: 384
Period size: 43 Copynumber: 6.4 Consensus size: 42
68702051 ATCTGCCAAA
* * *
68702061 TTTAGCGGCG-TTTGTAAAAAAAGCGCCGCTAAAAGCCTTGACG
1 TTTAGCGGCGCTTT-TACACAAA-CGCCGCTAAAAGCCTTGACC
*
68702104 TTTAGCGGTGCTTTTACCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTTA-CACAAACGCCGCTAAAAGCCTTGACC
*
68702147 TTTAGC-G-GCTTTTACCACAAACGCCGCTAAAAGCCTTGACG
1 TTTAGCGGCGCTTTTA-CACAAACGCCGCTAAAAGCCTTGACC
*
68702188 TTTAGCGGCGCTTTTCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTTACACAAACGCCGCTAAAAGCCTTGACC
*
68702230 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTT-ACACAAACGCCGCTAAAAGCCTTGACC
*
68702273 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTT-ACACAAACGCCGCTAAAAGCCTTGACC
*
68702316 TTTAGCGGCGTTTTT
1 TTTAGCGGCGCTTTT
68702331 TTCCAATAAA
Statistics
Matches: 214, Mismatches: 8, Indels: 10
0.92 0.03 0.04
Matches are distributed among these distances:
41 39 0.18
42 42 0.20
43 126 0.59
44 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTACACAAACGCCGCTAAAAGCCTTGACC
Found at i:68702658 original size:64 final size:64
Alignment explanation
Indices: 68702574--68702742 Score: 196
Period size: 64 Copynumber: 2.6 Consensus size: 64
68702564 TGTTCTTCTT
* * * ** **
68702574 ATACTGAAACGCCATTCTCATGCACCGAACCTCTGCAAAGCCATAATTTACTTAATGATATTTG
1 ATACTCAAACCCCATTCTCATCCACCGAACCTCTGCAAAGCCATAATTTACTTAACAATATTCA
* *
68702638 ATATTCAAACCCCATTCTCATCCACCTAACCT-TCGCAAAGCCATAATTTACTTAACAATATTCA
1 ATACTCAAACCCCATTCTCATCCACCGAACCTCT-GCAAAGCCATAATTTACTTAACAATATTCA
* * ** *
68702702 ATACTGAAACCCCATTCTAATCCAGTGAACCTCTACAAAGC
1 ATACTCAAACCCCATTCTCATCCACCGAACCTCTGCAAAGC
68702743 AAAAGTTTCC
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
63 1 0.01
64 85 0.98
65 1 0.01
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.28
Consensus pattern (64 bp):
ATACTCAAACCCCATTCTCATCCACCGAACCTCTGCAAAGCCATAATTTACTTAACAATATTCA
Found at i:68707562 original size:10 final size:10
Alignment explanation
Indices: 68707547--68707579 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
68707537 CAAATCATGA
68707547 AAGCACAAAC
1 AAGCACAAAC
68707557 AAGCACAAAC
1 AAGCACAAAC
68707567 AAGCACAAAC
1 AAGCACAAAC
68707577 AAG
1 AAG
68707580 GTCTTTAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.61, C:0.27, G:0.12, T:0.00
Consensus pattern (10 bp):
AAGCACAAAC
Found at i:68708543 original size:16 final size:16
Alignment explanation
Indices: 68708522--68708561 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
68708512 AATAGGGATT
68708522 AAATTATGAAATTGTA
1 AAATTATGAAATTGTA
***
68708538 AAATTATGTGGTTGTA
1 AAATTATGAAATTGTA
68708554 AAATTATG
1 AAATTATG
68708562 TGGTTAAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.40
Consensus pattern (16 bp):
AAATTATGAAATTGTA
Found at i:68708562 original size:16 final size:16
Alignment explanation
Indices: 68708533--68708566 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
68708523 AATTATGAAA
68708533 TTGTAAAATTATGTGG
1 TTGTAAAATTATGTGG
68708549 TTGTAAAATTATGTGG
1 TTGTAAAATTATGTGG
68708565 TT
1 TT
68708567 AAAAGTGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (16 bp):
TTGTAAAATTATGTGG
Found at i:68709173 original size:23 final size:23
Alignment explanation
Indices: 68709086--68709209 Score: 76
Period size: 23 Copynumber: 5.3 Consensus size: 23
68709076 AGACTCACCA
*
68709086 CAGCTCATATGAGCTTACCGATATAT
1 CAGCTCGTATGAGCTTACC-AT-T-T
* * *
68709112 TAGCTCGTAAGAGCTTACTATTTT
1 CAGCTCGTATGAGCTTACCA-TTT
*
68709136 CAGCTCAT-TGAAGCTTACCATTT
1 CAGCTCGTATG-AGCTTACCATTT
*
68709159 CAGATCGTATGAGCTTA-C-TGTT
1 CAGCTCGTATGAGCTTACCAT-TT
* * *
68709181 CAGCTC-AATAGAGCTTATCGTTT
1 CAGCTCGTAT-GAGCTTACCATTT
68709204 CAGCTC
1 CAGCTC
68709210 AATAAAGCTT
Statistics
Matches: 79, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
21 3 0.04
22 15 0.19
23 25 0.32
24 18 0.23
25 2 0.03
26 16 0.20
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.35
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACCATTT
Found at i:68709194 original size:22 final size:22
Alignment explanation
Indices: 68709169--68709224 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
68709159 CAGATCGTAT
68709169 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
68709191 GAGCTTA-TCGTTTCAGCTCAATA
1 GAGCTTACT-G-TTCAGCTCAATA
*
68709214 AAGCTTACTGT
1 GAGCTTACTGT
68709225 ACATCAGCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.03
22 9 0.30
23 19 0.63
24 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:68709196 original size:45 final size:46
Alignment explanation
Indices: 68709116--68709206 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 46
68709106 ATATATTAGC
* *
68709116 TCGTAAGAGCTTACTATTTTCAGCTCATTGAAGCTTACCATTTCAGA
1 TCGTAAGAGCTTAC-ATGTTCAGCTCATAGAAGCTTACCATTTCAGA
* * *
68709163 TCGTATGAGCTTAC-TGTTCAGCTCAATAG-AGCTTATCGTTTCAG
1 TCGTAAGAGCTTACATGTTCAGCTC-ATAGAAGCTTACCATTTCAG
68709207 CTCAATAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
45 22 0.58
46 3 0.08
47 13 0.34
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (46 bp):
TCGTAAGAGCTTACATGTTCAGCTCATAGAAGCTTACCATTTCAGA
Found at i:68711512 original size:26 final size:26
Alignment explanation
Indices: 68711474--68711523 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
68711464 AAGTGAACTC
68711474 AAATTAACTTAAAAA-TGATAAAATAA
1 AAATTAACTTAAAAACT-ATAAAATAA
68711500 AAATTAA-TCTAAAAACTATAAAAT
1 AAATTAACT-TAAAAACTATAAAAT
68711524 GTAATGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.05
26 20 0.91
27 1 0.05
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (26 bp):
AAATTAACTTAAAAACTATAAAATAA
Found at i:68715810 original size:27 final size:27
Alignment explanation
Indices: 68715762--68715840 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
68715752 AGACCTCGGA
68715762 TTATAAAA-TACCGAAATACCCTCTGT-
1 TTATAAAATTACCGAAATACCCT-TGTG
*
68715788 TTATAAAATTATCGAAATACCCTTGTG
1 TTATAAAATTACCGAAATACCCTTGTG
* *
68715815 GTGTAAAATTACCGAAATACCCTTGT
1 TTATAAAATTACCGAAATACCCTTGT
68715841 AGGGTAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 11 0.23
27 36 0.77
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (27 bp):
TTATAAAATTACCGAAATACCCTTGTG
Found at i:68715847 original size:27 final size:26
Alignment explanation
Indices: 68715765--68715850 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 26
68715755 CCTCGGATTA
***
68715765 TAAAA-TACCGAAATACCCTCTGTTTA
1 TAAAATTACCGAAATACCCT-TGTGGG
*
68715791 TAAAATTATCGAAATACCCTTGTGGTG
1 TAAAATTACCGAAATACCCTTGTGG-G
68715818 TAAAATTACCGAAATACCCTTGTAGGG
1 TAAAATTACCGAAATACCCTTGT-GGG
68715845 TAAAAT
1 TAAAAT
68715851 GGCTGTTTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.15
27 42 0.81
28 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.30
Consensus pattern (26 bp):
TAAAATTACCGAAATACCCTTGTGGG
Found at i:68718946 original size:27 final size:27
Alignment explanation
Indices: 68718915--68718991 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
68718905 AAGACCCCAA
68718915 ATTATAAAATTACTGAAATACCCTCG-
1 ATTATAAAATTACTGAAATACCCTCGT
* *
68718941 ATTTATAAAATTATTGAAATACCCTTGT
1 A-TTATAAAATTACTGAAATACCCTCGT
* * *
68718969 AGTGTAAAATTACCGAAATACCC
1 ATTATAAAATTACTGAAATACCC
68718992 GTGTAGGGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (27 bp):
ATTATAAAATTACTGAAATACCCTCGT
Found at i:68718996 original size:27 final size:27
Alignment explanation
Indices: 68718946--68719005 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
68718936 CCTCGATTTA
** * *
68718946 TAAAATTATTGAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCGTGTAGGG
68718973 TAAAATTACCGAAATACCCGTGTAGGG
1 TAAAATTACCGAAATACCCGTGTAGGG
68719000 TAAAAT
1 TAAAAT
68719006 GACTGTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCGTGTAGGG
Found at i:68719494 original size:33 final size:34
Alignment explanation
Indices: 68719448--68719551 Score: 133
Period size: 33 Copynumber: 3.1 Consensus size: 34
68719438 ATTGCATTAC
*
68719448 ACTGTACTGATACTGTATTA-GGCTTAGGCCCAA
1 ACTGTACTGATACTGTATTAGGGCTAAGGCCCAA
* *
68719481 ACTGTACTAATACTGTA-TAGGGCTAAGGCCCAG
1 ACTGTACTGATACTGTATTAGGGCTAAGGCCCAA
* * *
68719514 ACTCTACTGATACTGTA-TAGGGCTAAAGCCCAG
1 ACTGTACTGATACTGTATTAGGGCTAAGGCCCAA
68719547 ACTGT
1 ACTGT
68719552 TTTGCATATT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
32 2 0.03
33 61 0.97
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (34 bp):
ACTGTACTGATACTGTATTAGGGCTAAGGCCCAA
Found at i:68726777 original size:32 final size:31
Alignment explanation
Indices: 68726719--68726795 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 31
68726709 CCACGTGCCT
* *
68726719 GTGTGGCCCACACACCCAGATTGGCCTTACTC
1 GTGTGGCCCACACACCCAGATCGGCC-TACCC
68726751 GTGTGGCCCACACGA-CCA-ACTCGGCCTACCC
1 GTGTGGCCCACAC-ACCCAGA-TCGGCCTACCC
*
68726782 ATGTGGCCCACACA
1 GTGTGGCCCACACA
68726796 GCCACGCTCG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
30 1 0.03
31 17 0.43
32 21 0.52
33 1 0.03
ACGTcount: A:0.21, C:0.40, G:0.22, T:0.17
Consensus pattern (31 bp):
GTGTGGCCCACACACCCAGATCGGCCTACCC
Found at i:68736573 original size:42 final size:41
Alignment explanation
Indices: 68736463--68736584 Score: 120
Period size: 42 Copynumber: 2.9 Consensus size: 41
68736453 TACCTTACCA
* ** * *
68736463 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACA-CAAATCTCATATTC
* * *
68736505 ATGCCAATAGCCCAGTTATGGCCTTACACAAAGTCTCATA-TC
1 ATGCC-ATATCCCAGATATGGTCTTACACAAA-TCTCATATTC
68736547 ATTGCCATATCCCAGATATGGTCTTACACGAAATCTCA
1 A-TGCCATATCCCAGATATGGTCTTACAC-AAATCTCA
68736585 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
42 34 0.52
43 31 0.48
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACAAATCTCATATTC
Found at i:68738074 original size:17 final size:18
Alignment explanation
Indices: 68738049--68738082 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68738039 CTTCGTCAGT
*
68738049 TTTTTATTT-CCCTTAGC
1 TTTTGATTTCCCCTTAGC
68738066 TTTTGATTTCCCCTTAG
1 TTTTGATTTCCCCTTAG
68738083 AGGATAAGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.24, G:0.09, T:0.56
Consensus pattern (18 bp):
TTTTGATTTCCCCTTAGC
Found at i:68739856 original size:25 final size:25
Alignment explanation
Indices: 68739824--68739871 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
68739814 TTATAATATG
*
68739824 AAAATGACCATTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68739849 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68739872 GTTTTTGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68739937 original size:20 final size:20
Alignment explanation
Indices: 68739914--68739952 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
68739904 TAAACATGGT
68739914 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
68739934 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
68739953 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:68740037 original size:23 final size:23
Alignment explanation
Indices: 68740007--68740076 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
68739997 AAGTGCAAAT
*
68740007 GGGCTTATGCCCCAATTATTAAA
1 GGGCTTATGCCCCAGTTATTAAA
68740030 GGGCTTATGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTATT-AAA
* * *
68740054 GGGTTTTTGCCCCAGTTACTAAA
1 GGGCTTATGCCCCAGTTATTAAA
68740077 AGAGGCTAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 22 0.52
24 20 0.48
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (23 bp):
GGGCTTATGCCCCAGTTATTAAA
Found at i:68740064 original size:24 final size:24
Alignment explanation
Indices: 68740007--68740097 Score: 105
Period size: 24 Copynumber: 3.8 Consensus size: 24
68739997 AAGTGCAAAT
*
68740007 GGGCTTATGCCCCAATTATT-AAA
1 GGGCTTATGCCCCAGTTATTAAAA
68740030 GGGCTTATGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTATTAAAA
* * *
68740054 GGGTTTTTGCCCCAGTTACTAAAA
1 GGGCTTATGCCCCAGTTATTAAAA
*
68740078 GAGGC-TAGGCCTCCAGTTAT
1 G-GGCTTATGCC-CCAGTTAT
68740098 ATGATAAAGT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
23 19 0.33
24 29 0.51
25 9 0.16
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
GGGCTTATGCCCCAGTTATTAAAA
Found at i:68740326 original size:31 final size:31
Alignment explanation
Indices: 68740291--68740354 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
68740281 CGTTTACAGT
*
68740291 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
68740322 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68740353 AA
1 AA
68740355 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:68748014 original size:20 final size:20
Alignment explanation
Indices: 68747991--68748046 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
68747981 TAAACATGGT
*
68747991 ATGTATGATATGCGCATGAC
1 ATGTATGATATGCACATGAC
*
68748011 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
68748031 ATGTATGATATGCACA
1 ATGTATGATATGCACA
68748047 AGATGTATTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:68748151 original size:24 final size:24
Alignment explanation
Indices: 68748104--68748173 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
68748094 AAGTGCAAAT
*
68748104 GGGCTTATGCCCAAGTTATT-AAA
1 GGGCTTATGCCCCAGTTATTAAAA
68748127 GGGCTTATGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTATTAAAA
* * *
68748151 GGGCTTTTGTCCCAGTTACTAAA
1 GGGCTTATGCCCCAGTTATTAAA
68748174 GGAGGCTAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 19 0.45
24 23 0.55
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
GGGCTTATGCCCCAGTTATTAAAA
Found at i:68748423 original size:31 final size:31
Alignment explanation
Indices: 68748388--68748451 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
68748378 CGTTTACAGT
*
68748388 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
68748419 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68748450 AA
1 AA
68748452 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:68753121 original size:35 final size:35
Alignment explanation
Indices: 68753009--68753147 Score: 122
Period size: 35 Copynumber: 4.0 Consensus size: 35
68752999 GCCACATAAG
* *
68753009 TACATGT-AAGCTTATATTGAACTTGTATATTCGGC
1 TACATGTGAA-CTTATATTGAAATTGTATATTCGGA
* ** *
68753044 TGCATGTGAGGTTATATTG-AATTTTAGTATTC-GA
1 TACATGTGAACTTATATTGAAATTGTA-TATTCGGA
68753078 TTACATGTGAACTTATATTGAAATTGTATATTCGGA
1 -TACATGTGAACTTATATTGAAATTGTATATTCGGA
* * * * * *
68753114 TATATGTGAAGTTATCTTAAAAATGCATATTCGG
1 TACATGTGAACTTATATTGAAATTGTATATTCGG
68753148 CCATATGTGA
Statistics
Matches: 83, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
34 6 0.07
35 68 0.82
36 9 0.11
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (35 bp):
TACATGTGAACTTATATTGAAATTGTATATTCGGA
Found at i:68753145 original size:70 final size:70
Alignment explanation
Indices: 68753009--68753146 Score: 154
Period size: 70 Copynumber: 2.0 Consensus size: 70
68752999 GCCACATAAG
* * * * * * **
68753009 TACATGTAAGCTTATATTGAACTTGTATATTCGGCTGCATGTGAGGTTATATTGAATTTTAGTAT
1 TACATGTAAGCTTATATTGAAATTGTATATTCGGATACATGTGAAGTTATATTAAAATGCAGTAT
68753074 TCGAT
66 TCGAT
* *
68753079 TACATGTGAA-CTTATATTGAAATTGTATATTCGGATATATGTGAAGTTATCTTAAAAATGCA-T
1 TACATGT-AAGCTTATATTGAAATTGTATATTCGGATACATGTGAAGTTATATT-AAAATGCAGT
68753142 ATTCG
64 ATTCG
68753147 GCCATATGTG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
70 50 0.89
71 6 0.11
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (70 bp):
TACATGTAAGCTTATATTGAAATTGTATATTCGGATACATGTGAAGTTATATTAAAATGCAGTAT
TCGAT
Found at i:68753154 original size:35 final size:35
Alignment explanation
Indices: 68753082--68753157 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 35
68753072 ATTCGATTAC
* * * *
68753082 ATGTGAACTTATATTGAAATTGTATATTCGGATAT
1 ATGTGAACTTATATTAAAAATGCATATTCGGACAT
* * *
68753117 ATGTGAAGTTATCTTAAAAATGCATATTCGGCCAT
1 ATGTGAACTTATATTAAAAATGCATATTCGGACAT
68753152 ATGTGA
1 ATGTGA
68753158 TGTTCTTTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.38
Consensus pattern (35 bp):
ATGTGAACTTATATTAAAAATGCATATTCGGACAT
Found at i:68759671 original size:255 final size:252
Alignment explanation
Indices: 68759201--68759710 Score: 831
Period size: 255 Copynumber: 2.0 Consensus size: 252
68759191 ATCTGAGTCT
*
68759201 ATAAGTGAAGAGGAATTGAATTTTAGGAGGGAGACATCATGAGAACTATGGTAATGGATACCAAT
1 ATAAGTGAAGAGGAATTGAATTTTAGGAGGGAGACATCATGAGAACTATGGTAATGGATACCAAC
* *
68759266 AATTAATTTTTCTAATCGGAAAAGCAAATCATGATATTGGATATGGAAACCACGGTGGTGGTGAA
66 AATTAATTTTTCTAATCGGAAAAGCAAATCATGATAATGGATATAGAAACCACGGTGGTGGTGAA
* * *
68759331 ATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGATCTTTAGTCTTTGGAAACCAA
131 ATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAACCAA
* * *
68759396 TACATTTGTTTCAGCTCATGGATGTTGAAAACAGCTACTTTCTAGTGAAATTGCAGA
196 CACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAATTGCAGA
*
68759453 ATAAGTGAAGAGGAGATTGAATTTTAGGAGGGAGTCATCATGAGAACTATGGTTAATGGATACCA
1 ATAAGTGAAGAGGA-ATTGAATTTTAGGAGGGAGACATCATGAGAACTATGG-TAATGGATACCA
* *
68759518 ACAATTAATTTTTCTGATTGGATAAAGCAAATCATGATAATGGATATAGAAACCACGGTGGTGGT
64 ACAATTAATTTTTCTAATCGGA-AAAGCAAATCATGATAATGGATATAGAAACCACGGTGGTGGT
* *
68759583 GAAATTAGTGGGAATGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAAC
128 GAAATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAAC
** * *
68759648 TTACACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAGTTTCAGA
193 CAACACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAATTGCAGA
68759708 ATA
1 ATA
68759711 GGGAGAACTA
Statistics
Matches: 237, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
252 14 0.06
253 36 0.15
254 31 0.13
255 156 0.66
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (252 bp):
ATAAGTGAAGAGGAATTGAATTTTAGGAGGGAGACATCATGAGAACTATGGTAATGGATACCAAC
AATTAATTTTTCTAATCGGAAAAGCAAATCATGATAATGGATATAGAAACCACGGTGGTGGTGAA
ATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAACCAA
CACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAATTGCAGA
Found at i:68766029 original size:12 final size:12
Alignment explanation
Indices: 68766012--68766036 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68766002 TAATTTTCTA
68766012 AAAACATTATTG
1 AAAACATTATTG
68766024 AAAACATTATTG
1 AAAACATTATTG
68766036 A
1 A
68766037 CCATGTCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (12 bp):
AAAACATTATTG
Found at i:68767752 original size:99 final size:99
Alignment explanation
Indices: 68767578--68767766 Score: 342
Period size: 99 Copynumber: 1.9 Consensus size: 99
68767568 CATGCCAAAC
* *
68767578 TTATCAACTAATCATCAAACACAAGTCTACCTACACATGCCATTATAACCTCGGCCAAAATATCA
1 TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACCTCGGCCAAAACATCA
68767643 AAAACCATTGATATAATCATTAGATAGTGTGAAT
66 AAAACCATTGATATAATCATTAGATAGTGTGAAT
*
68767677 TTATCAACTAATCATCAAACACAAGTCCACCTATACATGCCATTATAACCTCGGCCAAAACATCA
1 TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACCTCGGCCAAAACATCA
*
68767742 AAAACTATTGATATAATCATTAGAT
66 AAAACCATTGATATAATCATTAGAT
68767767 CTTCAATGAA
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 86 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (99 bp):
TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACCTCGGCCAAAACATCA
AAAACCATTGATATAATCATTAGATAGTGTGAAT
Found at i:68769688 original size:20 final size:20
Alignment explanation
Indices: 68769663--68769723 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
68769653 TTATTTATTT
68769663 TTTTAAAACTTTTTACTTTA
1 TTTTAAAACTTTTTACTTTA
68769683 TTTTAATAA----TTA-TTT-
1 TTTTAA-AACTTTTTACTTTA
68769698 TTTTAAAACTTTTTACTTTA
1 TTTTAAAACTTTTTACTTTA
68769718 TTTTAA
1 TTTTAA
68769724 TAATAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
14 2 0.06
15 6 0.18
16 3 0.09
17 3 0.09
18 3 0.09
19 3 0.09
20 12 0.35
21 2 0.06
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTAAAACTTTTTACTTTA
Found at i:68769703 original size:35 final size:35
Alignment explanation
Indices: 68769657--68769727 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
68769647 TTTTGTTTAT
68769657 TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
1 TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
68769692 TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
1 TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
68769727 T
1 T
68769728 AAAAAATAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (35 bp):
TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
Found at i:68771777 original size:18 final size:19
Alignment explanation
Indices: 68771738--68771777 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
68771728 ACAGATTGAT
*
68771738 TAAA-AAAATTATATATAA
1 TAAATAAAATTACATATAA
68771756 -AAATAAAATTACAT-TAA
1 TAAATAAAATTACATATAA
68771773 TAAAT
1 TAAAT
68771778 TCAACTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAATAAAATTACATATAA
Found at i:68778233 original size:16 final size:17
Alignment explanation
Indices: 68778213--68778251 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
68778203 TGGAATAAGA
68778213 CTGTAATTG-AATAGAG
1 CTGTAATTGAAATAGAG
*
68778229 TTGTAA-TGAAATAGAG
1 CTGTAATTGAAATAGAG
68778245 CTGTAAT
1 CTGTAAT
68778252 CAGTAGTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
15 2 0.11
16 17 0.89
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.33
Consensus pattern (17 bp):
CTGTAATTGAAATAGAG
Found at i:68778535 original size:38 final size:37
Alignment explanation
Indices: 68778464--68778535 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
68778454 AAAATAATAA
*
68778464 ATAATTTAACTATATTTTAACATAATTATTATTAAAT
1 ATAATTTAACTACATTTTAACATAATTATTATTAAAT
*
68778501 ATAATTTAA-TAACATTCTTAATATAATTATTATTA
1 ATAATTTAACT-ACATT-TTAACATAATTATTATTA
68778536 TATGAATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 1 0.03
37 13 0.42
38 17 0.55
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (37 bp):
ATAATTTAACTACATTTTAACATAATTATTATTAAAT
Found at i:68778559 original size:35 final size:37
Alignment explanation
Indices: 68778485--68778560 Score: 86
Period size: 38 Copynumber: 2.1 Consensus size: 37
68778475 ATATTTTAAC
* **
68778485 ATAATTATTATTAAATATAATTTAATAACATTCTTAAT
1 ATAATTATTATT-AATATAATTTAATAACAATCAAAAT
68778523 ATAATTATTATT-ATATGAATTTAA-AA-AATCAAAAT
1 ATAATTATTATTAATAT-AATTTAATAACAATCAAAAT
68778558 ATA
1 ATA
68778561 TACTACTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
35 9 0.26
36 6 0.18
37 7 0.21
38 12 0.35
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (37 bp):
ATAATTATTATTAATATAATTTAATAACAATCAAAAT
Found at i:68778968 original size:43 final size:43
Alignment explanation
Indices: 68778920--68779005 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
68778910 TACAAATACA
* *
68778920 TAAGGCAACTAATTTGATGTCTTTTCCAACTTGATACCTAACC
1 TAAGGCAACCAATTTGATGTCTTTTCCAACTTGATACCCAACC
*
68778963 TAAGGCAACCAATTTGATGTCTTTTCTAACTTGATACCCAACC
1 TAAGGCAACCAATTTGATGTCTTTTCCAACTTGATACCCAACC
68779006 AATTCCTGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (43 bp):
TAAGGCAACCAATTTGATGTCTTTTCCAACTTGATACCCAACC
Found at i:68780642 original size:16 final size:16
Alignment explanation
Indices: 68780621--68780653 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68780611 AAACTGAGGA
68780621 TGGAATCCCAAATTAG
1 TGGAATCCCAAATTAG
68780637 TGGAATCCCAAATTAG
1 TGGAATCCCAAATTAG
68780653 T
1 T
68780654 AATTGTAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (16 bp):
TGGAATCCCAAATTAG
Found at i:68781696 original size:19 final size:19
Alignment explanation
Indices: 68781672--68781709 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
68781662 AAGTGTTAAC
68781672 ATGCATAAGGTCCATTTAG
1 ATGCATAAGGTCCATTTAG
68781691 ATGCATAAGGTCCATTTAG
1 ATGCATAAGGTCCATTTAG
68781710 CAAAATTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (19 bp):
ATGCATAAGGTCCATTTAG
Found at i:68785461 original size:29 final size:29
Alignment explanation
Indices: 68785391--68785461 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
68785381 CTGTACGATA
* * *
68785391 ATCTCTATTAAAATGGAAGTCTTTGTGGCG
1 ATCTCTAAT-AAATGGAAGCCTTGGTGGCG
*
68785421 ACCT-TAATTAAATGGAAGCCTTGGTGGCG
1 ATCTCTAA-TAAATGGAAGCCTTGGTGGCG
68785450 ATCTCTAATAAA
1 ATCTCTAATAAA
68785462 AAGAATGCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
29 27 0.79
30 7 0.21
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.32
Consensus pattern (29 bp):
ATCTCTAATAAATGGAAGCCTTGGTGGCG
Found at i:68804806 original size:17 final size:19
Alignment explanation
Indices: 68804780--68804817 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
68804770 GCGTATGACA
68804780 TTTTAAAAG-T-TGAAAAT
1 TTTTAAAAGTTCTGAAAAT
*
68804797 TTTTATAAGTTCTGAAAAT
1 TTTTAAAAGTTCTGAAAAT
68804816 TT
1 TT
68804818 CACATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 8 0.44
18 1 0.06
19 9 0.50
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (19 bp):
TTTTAAAAGTTCTGAAAAT
Found at i:68805058 original size:20 final size:20
Alignment explanation
Indices: 68805033--68805073 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
68805023 AATTTACTCT
68805033 AAAACAGGGAAATAAAACTA
1 AAAACAGGGAAATAAAACTA
*
68805053 AAAACAGGGAGATAAAACTA
1 AAAACAGGGAAATAAAACTA
68805073 A
1 A
68805074 GTAAGCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.10, G:0.17, T:0.10
Consensus pattern (20 bp):
AAAACAGGGAAATAAAACTA
Found at i:68807750 original size:32 final size:34
Alignment explanation
Indices: 68807714--68807778 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
68807704 TAACAGTGGT
*
68807714 ACTGGACCAGAG-CCCTT-TTCAGATTACAGTAA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAGTAA
* **
68807746 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAGTA
68807779 TGGCCCATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 9 0.33
33 5 0.19
34 13 0.48
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (34 bp):
ACTGGACCAGAGCCCCTTATTCAGATAACAGTAA
Found at i:68809654 original size:26 final size:26
Alignment explanation
Indices: 68809624--68809679 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
68809614 TGAAATTCCC
68809624 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68809650 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68809676 ATCA
1 ATCA
68809680 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68815147 original size:25 final size:26
Alignment explanation
Indices: 68815110--68815161 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
68815100 TCAAACATGC
68815110 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
68815136 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
68815161 A
1 A
68815162 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:68816678 original size:26 final size:26
Alignment explanation
Indices: 68816648--68816729 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
68816638 TGAAATTCCC
68816648 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68816674 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68816700 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68816726 ATCA
1 ATCA
68816730 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68817827 original size:5 final size:5
Alignment explanation
Indices: 68817817--68817893 Score: 59
Period size: 5 Copynumber: 14.6 Consensus size: 5
68817807 ACGCAACCTA
* *
68817817 ATTTT ATTTT ATTTAT ATCTTT ATTTAT ATTTAT ATATT AATTT ATTTT
1 ATTTT ATTTT ATTT-T AT-TTT ATTT-T ATTT-T ATTTT ATTTT ATTTT
*
68817866 -TTCTT -TTTT CTTTTT ATTTT ATTTT ATT
1 ATT-TT ATTTT -ATTTT ATTTT ATTTT ATT
68817894 GCATGTTATA
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
4 4 0.07
5 35 0.57
6 20 0.33
7 2 0.03
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (5 bp):
ATTTT
Found at i:68817849 original size:18 final size:18
Alignment explanation
Indices: 68817819--68817862 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
68817809 GCAACCTAAT
*
68817819 TTTATTT-TATTTATATC
1 TTTATTTATATTTATATA
68817836 TTTATTTATATTTATATA
1 TTTATTTATATTTATATA
*
68817854 TTAATTTAT
1 TTTATTTAT
68817863 TTTTTCTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATTTATATTTATATA
Found at i:68822721 original size:42 final size:41
Alignment explanation
Indices: 68822602--68822721 Score: 104
Period size: 42 Copynumber: 2.9 Consensus size: 41
68822592 CACTATAACA
* * *
68822602 ATGCCATATCCCAGATATGG--TTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTATA-CGAATCTCATATCG
* *
68822642 ATGCCAATAGT-CCAGCTATAGTCTTACT-CGAAGTCTCATATCG
1 ATGCC-ATA-TCCCAGATATGGTCTTA-TACGAA-TCTCATATCG
*
68822685 ATGTCATATCCCAGATATGGTCTTATACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTATACG-AATCTCA
68822722 AATAGCCCTA
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
40 5 0.08
41 13 0.21
42 26 0.41
43 19 0.30
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTATACGAATCTCATATCG
Found at i:68825432 original size:43 final size:43
Alignment explanation
Indices: 68825356--68825863 Score: 471
Period size: 43 Copynumber: 12.0 Consensus size: 43
68825346 ATATCGTACA
* * * *
68825356 ATGCCAAGGTCCCAAACATAGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* ** ** * *
68825399 ATACC-ACAGTCTTAGACAAGGTCTTACACGTAATCGCATATCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCACATATCG
*
68825442 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCA-ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
*
68825484 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* *
68825527 ATGCCAACGTCTCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * * * * *
68825570 ATGCCAATGTCCCAAACGTGCTCTTACCT-CAA--AC--GT-G
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* ** * *
68825607 GT-CTTAC--CTCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * * **
68825647 ATGCCAATGTCCCAAACGTGCTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * * * * * *
68825690 ATGTCAATGTCCTAGGCATGGTCTTACACGTATTCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * * * *
68825733 ATGCCAACATTCCAGACATGGTCTTACACGAAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * * * *
68825776 ATGTCAACGTCCCAGATGTGGTATTACACGTAATCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * *
68825819 ATCCCAACGTCTCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
68825862 AT
1 AT
68825864 AATCCTATGT
Statistics
Matches: 380, Mismatches: 73, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
34 16 0.04
35 2 0.01
36 2 0.01
37 4 0.01
38 1 0.00
39 1 0.00
40 4 0.01
41 2 0.01
42 43 0.11
43 303 0.80
44 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:68825604 original size:17 final size:17
Alignment explanation
Indices: 68825582--68825630 Score: 89
Period size: 17 Copynumber: 2.9 Consensus size: 17
68825572 GCCAATGTCC
*
68825582 CAAACGTGCTCTTACCT
1 CAAACGTGGTCTTACCT
68825599 CAAACGTGGTCTTACCT
1 CAAACGTGGTCTTACCT
68825616 CAAACGTGGTCTTAC
1 CAAACGTGGTCTTAC
68825631 ATGTAATCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (17 bp):
CAAACGTGGTCTTACCT
Found at i:68826381 original size:30 final size:30
Alignment explanation
Indices: 68826347--68826406 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
68826337 ACTTAACAAG
68826347 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
68826377 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
68826407 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:68831465 original size:19 final size:20
Alignment explanation
Indices: 68831443--68831480 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
68831433 TAATTTCTTC
*
68831443 TTTTATTCCTATT-TTTATT
1 TTTTATTCATATTGTTTATT
68831462 TTTTATTCATATTGTTTAT
1 TTTTATTCATATTGTTTAT
68831481 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTTATTCATATTGTTTATT
Found at i:68838102 original size:13 final size:13
Alignment explanation
Indices: 68838070--68838104 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
68838060 ATAGAATTTC
*
68838070 TTTCTTCTCCCGA
1 TTTCTTTTCCCGA
*
68838083 TTTCTTTTCCCTA
1 TTTCTTTTCCCGA
68838096 TTTCTTTTC
1 TTTCTTTTC
68838105 TTTCCTCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.31, G:0.03, T:0.60
Consensus pattern (13 bp):
TTTCTTTTCCCGA
Found at i:68839386 original size:91 final size:89
Alignment explanation
Indices: 68839285--68839550 Score: 196
Period size: 91 Copynumber: 2.9 Consensus size: 89
68839275 GCTCGACCAG
* * * *
68839285 TGGTTTATCCACAACGACTTTTAGTCGACAGTCATA-TCCTCGACTAGTGGTTCATCCAC-ATGT
1 TGGTTCATCCACAA-GA-TTTTAGTCGACAGT-ATACTACTCGACCAATGGTTCATCCACAATGT
* ** * *
68839348 ATTAGTAGCTTTTATATGCACTAATGGA
63 -TCAACAACTTTTATATGCACAAATGGA
* * * *
68839376 TGGTTCATCCATCAATATTTTATTCGGCAGTTTACCTACTCGACCAATGGTTCATCCACAATGTT
1 TGGTTCATCCA-CAAGATTTTAGTCGACAGTATA-CTACTCGACCAATGGTTCATCCACAATGTT
68839441 CAACAACTTTTATATGCACAAATGGA
64 CAACAACTTTTATATGCACAAATGGA
* * * * * ** * *
68839467 TGGTTCAACCACCAATATTTCAGTC-TCTAGTTTACCTACTTAACCAATGGTTCATCTACAAAGT
1 TGGTTCATCCA-CAAGATTTTAGTCGAC-AGTATA-CTACTCGACCAATGGTTCATCCACAATGT
* * *
68839531 ATTAGCAACTTTTATCTGCA
63 -TCAACAACTTTTATATGCA
68839551 TAGACAGTTG
Statistics
Matches: 144, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
89 2 0.01
90 13 0.09
91 106 0.74
92 23 0.16
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (89 bp):
TGGTTCATCCACAAGATTTTAGTCGACAGTATACTACTCGACCAATGGTTCATCCACAATGTTCA
ACAACTTTTATATGCACAAATGGA
Found at i:68844458 original size:19 final size:17
Alignment explanation
Indices: 68844406--68844450 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
68844396 TTAAATTCAT
* *
68844406 AAATTGTAAAATACT-A
1 AAATTTTAAAATTCTCA
68844422 AAATTTTAAAATTCTCA
1 AAATTTTAAAATTCTCA
68844439 AAATATTTAAAA
1 AAAT-TTTAAAA
68844451 ATTTTCAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 13 0.52
17 5 0.20
18 7 0.28
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.36
Consensus pattern (17 bp):
AAATTTTAAAATTCTCA
Found at i:68844571 original size:31 final size:31
Alignment explanation
Indices: 68844536--68844599 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
68844526 AATCAAATTT
68844536 AAGTAAAAATTTAATAATTTTTTAATTCATA
1 AAGTAAAAATTTAATAATTTTTTAATTCATA
*
68844567 AAGTAAAAATTTAATAATTTTTTAATTCGTA
1 AAGTAAAAATTTAATAATTTTTTAATTCATA
68844598 AA
1 AA
68844600 ACCCGAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (31 bp):
AAGTAAAAATTTAATAATTTTTTAATTCATA
Found at i:68845803 original size:20 final size:21
Alignment explanation
Indices: 68845757--68845809 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
68845747 TACTAATTAC
68845757 AAATATTTAATAATTATATTT
1 AAATATTTAATAATTATATTT
68845778 AAATATTTAA-AA-TATAGTTT
1 AAATATTTAATAATTATA-TTT
*
68845798 ATATATTCTAAT
1 AAATATT-TAAT
68845810 TAAATTTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 4 0.14
20 11 0.39
21 13 0.46
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AAATATTTAATAATTATATTT
Found at i:68846118 original size:26 final size:26
Alignment explanation
Indices: 68846055--68846114 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
68846045 TTAAACTAAA
*
68846055 TTTTTCAAAGTAC-TTCTCAAAAGCAC
1 TTTTTCAAAGCACTTTC-CAAAAGCAC
* *
68846081 TTTTTCACAGCACTTTCCAAAAGTAC
1 TTTTTCAAAGCACTTTCCAAAAGCAC
68846107 -TTTTCAAA
1 TTTTTCAAA
68846115 AGCATTGCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 7 0.24
26 19 0.66
27 3 0.10
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (26 bp):
TTTTTCAAAGCACTTTCCAAAAGCAC
Found at i:68846506 original size:21 final size:21
Alignment explanation
Indices: 68846377--68846509 Score: 88
Period size: 21 Copynumber: 6.3 Consensus size: 21
68846367 CTGAAGGCTG
* * * *
68846377 AACAGAAGCACATAAGTGCTA
1 AACAGAAACTCATAAGAGTTA
* * *
68846398 AACAGAAACCCATAAGGGTTG
1 AACAGAAACTCATAAGAGTTA
* * *
68846419 AACGGAAGCTCATAAGAGCTA
1 AACAGAAACTCATAAGAGTTA
* * *
68846440 AACAGAAACCCATAAGGGTTG
1 AACAGAAACTCATAAGAGTTA
* * * *
68846461 AACAGAAGCTTA-ATAGAGCTG
1 AACAGAAACTCATA-AGAGTTA
*
68846482 AACAGAAACTCATATGAGTTA
1 AACAGAAACTCATAAGAGTTA
68846503 AACAGAA
1 AACAGAA
68846510 GCTTGTGAGA
Statistics
Matches: 83, Mismatches: 27, Indels: 4
0.73 0.24 0.04
Matches are distributed among these distances:
20 1 0.01
21 81 0.98
22 1 0.01
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (21 bp):
AACAGAAACTCATAAGAGTTA
Found at i:68846512 original size:42 final size:43
Alignment explanation
Indices: 68846375--68846531 Score: 171
Period size: 42 Copynumber: 3.7 Consensus size: 43
68846365 GCCTGAAGGC
*
68846375 TGAACAGAAGC--ACATAAGTGCTAAACAGAAACCCATAAGGGT
1 TGAACAGAAGCTTA-ATAAGAGCTAAACAGAAACCCATAAGGGT
* *
68846417 TGAACGGAAGC-TCATAAGAGCTAAACAGAAACCCATAAGGGT
1 TGAACAGAAGCTTAATAAGAGCTAAACAGAAACCCATAAGGGT
* * * *
68846459 TGAACAGAAGCTTAAT-AGAGCTGAACAGAAACTCATATGAGT
1 TGAACAGAAGCTTAATAAGAGCTAAACAGAAACCCATAAGGGT
* * * *
68846501 TAAACAGAAGCTT-GTGAGAGCTAAACGGAAA
1 TGAACAGAAGCTTAATAAGAGCTAAACAGAAA
68846532 GTAAACACGA
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 95 0.96
43 3 0.03
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.17
Consensus pattern (43 bp):
TGAACAGAAGCTTAATAAGAGCTAAACAGAAACCCATAAGGGT
Found at i:68853150 original size:28 final size:28
Alignment explanation
Indices: 68853109--68853171 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
68853099 TCCATTTTCC
*
68853109 TTCACTCTCATCACAACAGTTGTTCTCT
1 TTCACTCTCATCACAACAGTCGTTCTCT
* **
68853137 TTCACTCTCTTCACAGTAGTCGTTCTCT
1 TTCACTCTCATCACAACAGTCGTTCTCT
68853165 TTC-CTCT
1 TTCACTCT
68853172 TTGTCCATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.16, C:0.33, G:0.08, T:0.43
Consensus pattern (28 bp):
TTCACTCTCATCACAACAGTCGTTCTCT
Found at i:68855519 original size:14 final size:15
Alignment explanation
Indices: 68855502--68855530 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
68855492 TGAATGTTGT
68855502 ATTTATG-TAATGTG
1 ATTTATGTTAATGTG
68855516 ATTTATGTTAATGTG
1 ATTTATGTTAATGTG
68855531 TCATACTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
ATTTATGTTAATGTG
Found at i:68859661 original size:13 final size:13
Alignment explanation
Indices: 68859645--68859677 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
68859635 TTTAATTAAA
*
68859645 TTAGTTAATTAGT
1 TTAGATAATTAGT
68859658 TTAGATAATTAGT
1 TTAGATAATTAGT
68859671 TTA-ATAA
1 TTAGATAA
68859678 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:68862797 original size:95 final size:96
Alignment explanation
Indices: 68862634--68862818 Score: 250
Period size: 95 Copynumber: 1.9 Consensus size: 96
68862624 ACATCAAAGT
* * * *
68862634 CGATACCATGTCCCAGACATGGTCTGACACTGGCTCTCATCTGTCAGTGCCGATGCCATGTCCTA
1 CGATACCATGTCCCAGACATGGTCTGACACTAGCTCTCAGCTCTCAGTGCCGATGCCATGTCCCA
68862699 GACATGGTCTTACACT-G-ACACATAAGAAGC
66 GACAT-GTCTTACACTAGCACACATAAGAAGC
* * * * *
68862729 CGATACCATGTCCCAGACATGGTCTTACACTAGCTTTCAGGTCTCGAG-GCTGATGTCATGTCCC
1 CGATACCATGTCCCAGACATGGTCTGACACTAGCTCTCAGCTCTC-AGTGCCGATGCCATGTCCC
68862793 AGACATGTCTTACACTAGCACACATA
65 AGACATGTCTTACACTAGCACACATA
68862819 TCACCCAAAT
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
94 10 0.13
95 59 0.76
96 9 0.12
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (96 bp):
CGATACCATGTCCCAGACATGGTCTGACACTAGCTCTCAGCTCTCAGTGCCGATGCCATGTCCCA
GACATGTCTTACACTAGCACACATAAGAAGC
Found at i:68869834 original size:50 final size:49
Alignment explanation
Indices: 68869722--68869999 Score: 228
Period size: 50 Copynumber: 5.7 Consensus size: 49
68869712 AGGGTAAGAT
* * * * *
68869722 GCCGACGCCATATCCCAGACATGGTCTTACACTGA--CTCATACATCGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATAT-TAG
* * * * *
68869770 GTCAATGCCGTGTCCTAGACATGGTCTTACATTGACTCTCATATATTAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATTAG
* * * * * **
68869819 GACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCCTCTGTCGG
1 G-CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATTAG
* * * * ** *
68869869 TGTCGATGACATGTCTCAGACATGGTCTTACACT-AGCTTTCAGGTCTTGAG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATT-AG
*
68869920 GCCGATGCTATGTCCCAGACATGGTCTTACACTGACTCTCATA-ATGT-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATAT-TAG
68869968 GCCGATG-CATGTCCCAGACAT-GTCTTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
68870000 GCACACATAT
Statistics
Matches: 179, Mismatches: 43, Indels: 18
0.75 0.18 0.08
Matches are distributed among these distances:
46 11 0.06
47 13 0.07
48 36 0.20
49 3 0.02
50 113 0.63
51 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATTAG
Found at i:68880738 original size:21 final size:21
Alignment explanation
Indices: 68880712--68880752 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
68880702 CATACTACCT
68880712 GGATGCATAGATAAACAACCC
1 GGATGCATAGATAAACAACCC
68880733 GGATGCATAGATAAACAACC
1 GGATGCATAGATAAACAACC
68880753 ATTATGTGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.22, G:0.20, T:0.15
Consensus pattern (21 bp):
GGATGCATAGATAAACAACCC
Found at i:68884545 original size:114 final size:114
Alignment explanation
Indices: 68884413--68884640 Score: 429
Period size: 114 Copynumber: 2.0 Consensus size: 114
68884403 CGATGCCAAA
**
68884413 AACATGACCTAAGAGTGATTCGGGACTAAATTGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
1 AACATGACCTAAGAGTGATTCGGGACTAAACAGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
*
68884478 ATTTTTCATCAAAACAAGGGTCAGGCGCCCGTGTGGCTTGGGCCACGCC
66 ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
68884527 AACATGACCTAAGAGTGATTCGGGACTAAACAGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
1 AACATGACCTAAGAGTGATTCGGGACTAAACAGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
68884592 ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
66 ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
68884641 CATGTGGGTA
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 111 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (114 bp):
AACATGACCTAAGAGTGATTCGGGACTAAACAGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
Found at i:68892657 original size:51 final size:50
Alignment explanation
Indices: 68892593--68892722 Score: 156
Period size: 51 Copynumber: 2.6 Consensus size: 50
68892583 TTTAGGTCAT
68892593 GTGTGTAGTACTAAGTGCAGGCTACTATGC-ATACCAGACAACTTCAATCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTATGCTATACCAGA-AACTT-AATCAC
* *** ** *
68892644 GTGTGTAGTACTAAGTGCAGGCTACTAT-CTGTACCAGATTGTTGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTATGCTATACCAGAAACTTAATCAC
*
68892693 ATGTGTAGTACTAAGTGCAGGCTACTATGC
1 GTGTGTAGTACTAAGTGCAGGCTACTATGC
68892723 GTATCAGATA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 30 0.43
50 4 0.06
51 35 0.51
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (50 bp):
GTGTGTAGTACTAAGTGCAGGCTACTATGCTATACCAGAAACTTAATCAC
Found at i:68892731 original size:49 final size:50
Alignment explanation
Indices: 68892594--68892737 Score: 166
Period size: 49 Copynumber: 2.9 Consensus size: 50
68892584 TTAGGTCATG
* * *
68892594 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTCAATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA-TACTTCAATCACA
** ** *
68892645 TGTGTAGTACTAAGTGCAGGCTACTAT-CTGTACCAGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGC-GTACCAGATACTTCAATCACA
*
68892694 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATAGCTTC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA-CTTC
68892738 GGTTACAAGG
Statistics
Matches: 78, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
49 38 0.49
50 6 0.08
51 34 0.44
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTCAATCACA
Found at i:68892953 original size:16 final size:15
Alignment explanation
Indices: 68892932--68892961 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
68892922 GAATGGAGTA
68892932 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
68892948 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
68892962 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:68895028 original size:16 final size:15
Alignment explanation
Indices: 68895007--68895040 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
68894997 ATACACACTT
*
68895007 TAACATACATTTAACA
1 TAACATA-AATTAACA
68895023 TAACATAAATTAACA
1 TAACATAAATTAACA
68895038 TAA
1 TAA
68895041 ATATCTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (15 bp):
TAACATAAATTAACA
Found at i:68895395 original size:43 final size:42
Alignment explanation
Indices: 68895310--68895438 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
68895300 CACCTAGTAC
* * * * **
68895310 CATACCAACGCCATATACCAGATATGGTCTTACATGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
*
68895352 CATATCAATGCCAATATCCCAGCTATGGTCTTACACGAAATCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAAATCT
* * *
68895395 CATATCGATTCCATATCCCA-ATTATGGTCTTACACGTAATCT
1 CATATCAATGCCATATCCCAGA-TATGGTCTTACACGAAATCT
68895437 CA
1 CA
68895439 ACTAACCCTA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
42 39 0.53
43 35 0.47
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
Found at i:68903301 original size:32 final size:32
Alignment explanation
Indices: 68903265--68903330 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
68903255 TGGTCGTGCA
68903265 ACATGACAGTGTGCCGCACACAGTTGAGACAG
1 ACATGACAGTGTGCCGCACACAGTTGAGACAG
68903297 ACATGACAGTGTGCCGCACACAGTTGAGACAG
1 ACATGACAGTGTGCCGCACACAGTTGAGACAG
68903329 AC
1 AC
68903331 GCCCGTGTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.26, G:0.27, T:0.15
Consensus pattern (32 bp):
ACATGACAGTGTGCCGCACACAGTTGAGACAG
Found at i:68903627 original size:16 final size:16
Alignment explanation
Indices: 68903606--68903639 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
68903596 ATATGTTATA
68903606 AACTTACCAATTTCTC
1 AACTTACCAATTTCTC
68903622 AACTTACCAATTTCTC
1 AACTTACCAATTTCTC
68903638 AA
1 AA
68903640 ATTTGCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (16 bp):
AACTTACCAATTTCTC
Found at i:68904373 original size:44 final size:44
Alignment explanation
Indices: 68904336--68904442 Score: 151
Period size: 44 Copynumber: 2.4 Consensus size: 44
68904326 TGCCACTGTT
* * *
68904336 CCAGACATGGTCTTACACGTAAATCATAAGTTGATGCCAACCTC
1 CCAGACATGGTCTTACACATAAATCATAAGTCGATGCCAACATC
* * * *
68904380 CCGGACGTGCTCTTACATATAAATCATAAGTCGATGCCAACATC
1 CCAGACATGGTCTTACACATAAATCATAAGTCGATGCCAACATC
68904424 CCAGACATGGTCTTACACA
1 CCAGACATGGTCTTACACA
68904443 AAAACACATA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (44 bp):
CCAGACATGGTCTTACACATAAATCATAAGTCGATGCCAACATC
Found at i:68905899 original size:42 final size:42
Alignment explanation
Indices: 68905784--68905901 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
68905774 ATACCAATGC
** *
68905784 CATATCCCAGATATGGTCTTACAT-GGGATTTCATATCGATGA
1 CATATCCCAGATATGGTCTTAC-TCGAAATCTCATATCGATGA
* * * * *
68905826 CAATAGCCCAGCTATGGTCTTACACAAAATCTCATATCGATGT
1 C-ATATCCCAGATATGGTCTTACTCGAAATCTCATATCGATGA
* *
68905869 CATATCCCGGATATGGTCTTACTCGTAATCTCA
1 CATATCCCAGATATGGTCTTACTCGAAATCTCA
68905902 ACTAACCATA
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
42 27 0.45
43 33 0.55
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACTCGAAATCTCATATCGATGA
Found at i:68910276 original size:41 final size:41
Alignment explanation
Indices: 68910218--68910299 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
68910208 GTGCTCAGGG
68910218 GCTAGAAATTGAAAAGGAACTCTTTAATCTTCGTCATTCAT
1 GCTAGAAATTGAAAAGGAACTCTTTAATCTTCGTCATTCAT
*
68910259 GCTAGAAATTGAGAAGGAACTCTTTAATCTTCGTCATTCAT
1 GCTAGAAATTGAAAAGGAACTCTTTAATCTTCGTCATTCAT
68910300 CATTGAAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (41 bp):
GCTAGAAATTGAAAAGGAACTCTTTAATCTTCGTCATTCAT
Found at i:68910776 original size:32 final size:32
Alignment explanation
Indices: 68910708--68910788 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
68910698 TGAAATTAGT
*
68910708 TTGTTAGATTTTGAAATTATTATGTCTTAAAT
1 TTGTTAGATTTTGAAATTATTATGTCTTAAAC
* *
68910740 TTGTTAGATTTTGAATTTATTATGT-TTCAAGC
1 TTGTTAGATTTTGAAATTATTATGTCTT-AAAC
* *
68910772 TTGTTGGATATTGAAAT
1 TTGTTAGATTTTGAAAT
68910789 GATTGACAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 2 0.05
32 40 0.95
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.52
Consensus pattern (32 bp):
TTGTTAGATTTTGAAATTATTATGTCTTAAAC
Found at i:68912232 original size:19 final size:19
Alignment explanation
Indices: 68912187--68912224 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
68912177 CATCCGAACA
68912187 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
*
68912206 CTAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
68912225 TCCAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:68912235 original size:14 final size:15
Alignment explanation
Indices: 68912216--68912248 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
68912206 CTAGAAAAGT
68912216 AAATCATTTTCC-AA
1 AAATCATTTTCCGAA
68912230 AAATCATTTTCCGAA
1 AAATCATTTTCCGAA
68912245 AAAT
1 AAAT
68912249 GTTTTACTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.33
Consensus pattern (15 bp):
AAATCATTTTCCGAA
Found at i:68914462 original size:16 final size:16
Alignment explanation
Indices: 68914443--68914473 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68914433 CTTCTTCACT
68914443 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
68914459 TACTTACTTACTTAA
1 TACTCACTTACTTAA
68914474 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:68914479 original size:20 final size:20
Alignment explanation
Indices: 68914440--68914479 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
68914430 AAACTTCTTC
* *
68914440 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
68914460 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
68914480 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:68922577 original size:55 final size:53
Alignment explanation
Indices: 68922434--68922634 Score: 190
Period size: 55 Copynumber: 3.7 Consensus size: 53
68922424 ATCCTTTTGA
* * * *
68922434 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCATTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACCATTGCCTTATG
* * * * *
68922487 AACTCACCAATGCAATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACCATTGCCTTAT-G
* * ** *
68922541 TAACTTATCAATGCCATGTATTGACATGGTCTTACATGATATCC-TTACCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGA-CCATTGCCTTATG
* *
68922594 AAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGG
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGG
68922635 TATTCTTAAA
Statistics
Matches: 119, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
53 46 0.39
54 8 0.07
55 63 0.53
56 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACCATTGCCTTATG
Found at i:68922592 original size:108 final size:110
Alignment explanation
Indices: 68922434--68922634 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
68922424 ATCCTTTTGA
* * * *
68922434 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCATTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTATCGACATGGTCTTACATGATATCATTACCTTA-GAAACCTCACCAA
68922497 -TGCAATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCAATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
68922542 AACTTATCAATGCCATGTATTGACATGGTCTTACATGATATCCTTACCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTATCGACATGGTCTTACATGATATCATTACCTTAGAAACCTCACCAAT
*
68922607 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCAATGCCTTGGCATGGTCTTACATGG
68922635 TATTCTTAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 46 0.57
109 7 0.09
110 27 0.33
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTATCGACATGGTCTTACATGATATCATTACCTTAGAAACCTCACCAAT
TGCAATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:68926720 original size:42 final size:42
Alignment explanation
Indices: 68926674--68926784 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
68926664 TGCTAAACAA
* * *
68926674 AAACCCATAAAAGTTGAACGGAAGCTC-ATAAAAGCTGAACGG
1 AAACCCATAAGAGTTAAACAGAAGCTCAAT-AAAGCTGAACGG
* * * *
68926716 AAACCCATAAGGGTTTAATAGAAGCTCAATAAAGCTGAATGG
1 AAACCCATAAGAGTTAAACAGAAGCTCAATAAAGCTGAACGG
* *
68926758 AAACTCATATGAGTTAAACAGAAGCTC
1 AAACCCATAAGAGTTAAACAGAAGCTC
68926785 GTGAGTGCAA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 55 0.96
43 2 0.04
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (42 bp):
AAACCCATAAGAGTTAAACAGAAGCTCAATAAAGCTGAACGG
Found at i:68926724 original size:21 final size:21
Alignment explanation
Indices: 68926674--68926725 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
68926664 TGCTAAACAA
*
68926674 AAACCCATAAAAGTTGAACGG
1 AAACCCATAAAAGCTGAACGG
* *
68926695 AAGCTCATAAAAGCTGAACGG
1 AAACCCATAAAAGCTGAACGG
68926716 AAACCCATAA
1 AAACCCATAA
68926726 GGGTTTAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.48, C:0.21, G:0.17, T:0.13
Consensus pattern (21 bp):
AAACCCATAAAAGCTGAACGG
Found at i:68931060 original size:20 final size:18
Alignment explanation
Indices: 68931044--68931101 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 18
68931034 GGGTTTTGAG
68931044 GTTTTTTTTATATTTTTTAA
1 GTTTTTTTTATA-TTTTT-A
* *
68931064 GTTTATTATATATTCTTTA
1 GTTTTTTTTATATT-TTTA
68931083 GTCTTTTTTTATAATTTTT
1 GT-TTTTTTTAT-ATTTTT
68931102 TGAGAAGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (18 bp):
GTTTTTTTTATATTTTTA
Found at i:68933843 original size:50 final size:48
Alignment explanation
Indices: 68933708--68933847 Score: 165
Period size: 49 Copynumber: 2.9 Consensus size: 48
68933698 GTGGAAGTAT
* ** *
68933708 GTGGCAGTTTATCTGTAAATCAGTGGTGGCTTGTGGACAAAATGTTGTA
1 GTGGTAGTTTATCTG-AAATCAGTGGTGGCTTGTCCACAAAATCTTGTA
* * * *
68933757 GTGGTAGTATATCTGAAA-AATGTGGTGGCTTGTCCACAAAGTCTTATTA
1 GTGGTAGTTTATCTGAAATCA-GTGGTGGCTTGTCCACAAAATCTT-GTA
68933806 GTGGTAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAA
1 GTGGTAGTTTATCTG-AAATCAGTGGTGGCTTGTCCACAAAA
68933848 GGTGTTTCGA
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 23 0.30
49 29 0.38
50 22 0.29
51 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.34
Consensus pattern (48 bp):
GTGGTAGTTTATCTGAAATCAGTGGTGGCTTGTCCACAAAATCTTGTA
Found at i:68934088 original size:22 final size:23
Alignment explanation
Indices: 68934058--68934107 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
68934048 CTTGATCTCA
*
68934058 CACTGGGCCC-TTAAAGCTCACC
1 CACTAGGCCCTTTAAAGCTCACC
*
68934080 CACTAGGCCCTTTTAAAGTTCACC
1 CACTAGGCCC-TTTAAAGCTCACC
68934104 CACT
1 CACT
68934108 TTACTTGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 9 0.38
24 15 0.62
ACGTcount: A:0.24, C:0.38, G:0.14, T:0.24
Consensus pattern (23 bp):
CACTAGGCCCTTTAAAGCTCACC
Found at i:68940480 original size:46 final size:46
Alignment explanation
Indices: 68940413--68940534 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
68940403 TGTGTGCCAA
*
68940413 TGTAAGACATGTCTGAGACATGCATCAGCCACATT-ACGAGA-TCTAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCA-ATTGACGAGAGT-TAG
* *
68940459 TGTAAGACATGTTTGGGACATGCATCAG--ATTTGAGACGAGAGTTAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCAATT--GACGAGAGTTAG
*
68940505 TGTAAGACATGTCTAGGACATGCATCAGCC
1 TGTAAGACATGTCTGGGACATGCATCAGCC
68940535 TTGAGATATA
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
43 2 0.03
44 1 0.02
46 61 0.94
47 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCAATTGACGAGAGTTAG
Found at i:68944445 original size:28 final size:28
Alignment explanation
Indices: 68944408--68944510 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
68944398 TGGCCCCTTT
* *
68944408 AGGCCCAATCTCATTCATATGGCCCATT
1 AGGCCCAATCACATTCATATGGCCCATC
68944436 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * **
68944464 AAGCCCAATCACTTTCATATGGCCTGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
68944492 AGGCCCAATCACACTCATA
1 AGGCCCAATCACATTCATA
68944511 GTCATGCAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:68944748 original size:16 final size:16
Alignment explanation
Indices: 68944727--68944761 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
68944717 GCCAAACTTC
68944727 CGGCTTTTCAACATTT
1 CGGCTTTTCAACATTT
**
68944743 CGGCTTTTCGGCATTT
1 CGGCTTTTCAACATTT
68944759 CGG
1 CGG
68944762 GATTTGTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.26, G:0.23, T:0.40
Consensus pattern (16 bp):
CGGCTTTTCAACATTT
Found at i:68952961 original size:24 final size:23
Alignment explanation
Indices: 68952934--68952984 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
68952924 TTTTCTCTTA
*
68952934 AATTTT-AATTTTATTCTAATAATT
1 AATTTTCAA-TTTATT-GAATAATT
68952958 AATTTTTCAATTTATTGAATAATT
1 AA-TTTTCAATTTATTGAATAATT
68952982 AAT
1 AAT
68952985 AATTATTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
23 1 0.04
24 11 0.46
25 10 0.42
26 2 0.08
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (23 bp):
AATTTTCAATTTATTGAATAATT
Found at i:68955215 original size:15 final size:15
Alignment explanation
Indices: 68955195--68955224 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
68955185 TTTGTGCAAT
68955195 TAAAATGTTTCAAAC
1 TAAAATGTTTCAAAC
68955210 TAAAATGTTTCAAAC
1 TAAAATGTTTCAAAC
68955225 CTAACACGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (15 bp):
TAAAATGTTTCAAAC
Found at i:68959040 original size:43 final size:43
Alignment explanation
Indices: 68958979--68959061 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
68958969 GATATATGTG
*
68958979 GCATCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGCAA
1 GCATCCGAACTCGTTGAGTGGTCCGAGTTCATAATGGATGCAA
* *
68959022 GCATCCGAGCTCGTTGAGTGGTCTGAGTTCATAATGGATG
1 GCATCCGAACTCGTTGAGTGGTCCGAGTTCATAATGGATG
68959062 TGATACATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (43 bp):
GCATCCGAACTCGTTGAGTGGTCCGAGTTCATAATGGATGCAA
Found at i:68972132 original size:34 final size:34
Alignment explanation
Indices: 68972086--68972167 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
68972076 GTAAACAGTT
* * *
68972086 TGGGCCTAAGCCC-TTATCAGTAGCAATATTAGTG
1 TGGGCCTTAGCCCATTA-CAGTAACAATAGTAGTG
*
68972120 TGGGCCTTAGCCCATTACAGTAACAGTAGTAGTG
1 TGGGCCTTAGCCCATTACAGTAACAATAGTAGTG
*
68972154 TAGGCCTTAGCCCA
1 TGGGCCTTAGCCCA
68972168 ATTCGATACA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
34 39 0.93
35 3 0.07
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (34 bp):
TGGGCCTTAGCCCATTACAGTAACAATAGTAGTG
Found at i:68980706 original size:25 final size:25
Alignment explanation
Indices: 68980678--68980754 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
68980668 TATGCTAAAC
68980678 TTCAGTATAAATAAAGTTCTATTAT
1 TTCAGTATAAATAAAGTTCTATTAT
* * * *
68980703 TTCA--ATAAATTATTA-TGCTA-AAC
1 TTCAGTATAAA-TA-AAGTTCTATTAT
68980726 TTCAGTATAAATAAAGTTCTATTAT
1 TTCAGTATAAATAAAGTTCTATTAT
68980751 TTCA
1 TTCA
68980755 ATAAATTATT
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
23 11 0.29
24 12 0.32
25 15 0.39
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.43
Consensus pattern (25 bp):
TTCAGTATAAATAAAGTTCTATTAT
Found at i:68980710 original size:23 final size:23
Alignment explanation
Indices: 68980684--68980760 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
68980674 AAACTTCAGT
68980684 ATAAATAAAGTTCTATTATTTCA
1 ATAAATAAAGTTCTATTATTTCA
* * * *
68980707 ATAAATTATTA-TGCTA-AACTTCA
1 ATAAA-TA-AAGTTCTATTATTTCA
68980730 GTATAAATAAAGTTCTATTATTTCA
1 --ATAAATAAAGTTCTATTATTTCA
68980755 ATAAAT
1 ATAAAT
68980761 TATTATGCTT
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
23 17 0.43
24 12 0.30
25 11 0.28
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (23 bp):
ATAAATAAAGTTCTATTATTTCA
Found at i:68980739 original size:48 final size:48
Alignment explanation
Indices: 68980668--68980769 Score: 204
Period size: 48 Copynumber: 2.1 Consensus size: 48
68980658 TTTTCTTAAG
68980668 TATGCTAAACTTCAGTATAAATAAAGTTCTATTATTTCAATAAATTAT
1 TATGCTAAACTTCAGTATAAATAAAGTTCTATTATTTCAATAAATTAT
68980716 TATGCTAAACTTCAGTATAAATAAAGTTCTATTATTTCAATAAATTAT
1 TATGCTAAACTTCAGTATAAATAAAGTTCTATTATTTCAATAAATTAT
68980764 TATGCT
1 TATGCT
68980770 TGCTTAATAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (48 bp):
TATGCTAAACTTCAGTATAAATAAAGTTCTATTATTTCAATAAATTAT
Done.