Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 22 of 325
Found at i:8439811 original size:18 final size:19
Alignment explanation
Indices: 8439788--8439826 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
8439778 ATATATAGAT
8439788 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
8439806 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
8439825 AT
1 AT
8439827 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:8440176 original size:39 final size:39
Alignment explanation
Indices: 8440066--8440200 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
8440056 GACCTCGAGT
* * * *
8440066 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
8440107 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
8440145 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
8440184 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
8440201 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:8440344 original size:18 final size:19
Alignment explanation
Indices: 8440323--8440363 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8440313 AATGAAATGA
8440323 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
8440341 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
8440360 GAAA
1 GAAA
8440364 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:8444880 original size:5 final size:5
Alignment explanation
Indices: 8444854--8444911 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
8444844 ATGTGTTAAA
* *
8444854 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
8444903 ATATT ATAT
1 ATATT ATAT
8444912 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:8444890 original size:10 final size:9
Alignment explanation
Indices: 8444855--8444912 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
8444845 TGTGTTAAAA
8444855 TATATATAT
1 TATATATAT
*
8444864 TAAAT-TAT
1 TATATATAT
8444872 TAT-TATAT
1 TATATATAT
8444880 TATAGTATAT
1 TATA-TATAT
8444890 TATAT-TA-
1 TATATATAT
8444897 TATATTATAT
1 TATA-TATAT
8444907 TATATA
1 TATATA
8444913 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:8444902 original size:12 final size:12
Alignment explanation
Indices: 8444857--8444912 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
8444847 TGTTAAAATA
*
8444857 TATATATTAAAT
1 TATATATTATAT
8444869 TAT-TATTATATT
1 TATATATTATA-T
8444881 ATAGTATATTATAT
1 -TA-TATATTATAT
8444895 TATATATTATAT
1 TATATATTATAT
8444907 TATATA
1 TATATA
8444913 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:8446249 original size:18 final size:19
Alignment explanation
Indices: 8446226--8446264 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
8446216 ATATATAGAT
8446226 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
8446244 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
8446263 AT
1 AT
8446265 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:8446614 original size:39 final size:39
Alignment explanation
Indices: 8446504--8446638 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
8446494 GACCTCGAGT
* * * *
8446504 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
8446545 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
8446583 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
8446622 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
8446639 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:8446781 original size:18 final size:19
Alignment explanation
Indices: 8446760--8446800 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8446750 AATGAAATGA
8446760 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
8446778 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
8446797 GAAA
1 GAAA
8446801 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:8451733 original size:23 final size:22
Alignment explanation
Indices: 8451702--8451751 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
8451692 TTACGGAATT
*
8451702 AAAACAATTAAAATTCATTAGTA
1 AAAATAATTAAAATTCA-TAGTA
* * *
8451725 AAAATAATTTAATTTCATATTA
1 AAAATAATTAAAATTCATAGTA
8451747 AAAAT
1 AAAAT
8451752 TTCAATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAATAATTAAAATTCATAGTA
Found at i:8452225 original size:18 final size:19
Alignment explanation
Indices: 8452182--8452226 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
8452172 CCTAATTTCT
*
8452182 TTCTTTTTC-TTCTCTCTG
1 TTCTTTTTCTTTCTCTCTC
*
8452200 TTC-GTTTCTTTCTCTC-C
1 TTCTTTTTCTTTCTCTCTC
8452217 TTCTTTTTCT
1 TTCTTTTTCT
8452227 ATTTCTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.00, C:0.29, G:0.04, T:0.67
Consensus pattern (19 bp):
TTCTTTTTCTTTCTCTCTC
Found at i:8452650 original size:20 final size:20
Alignment explanation
Indices: 8452625--8452667 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
8452615 CCTAAATTGC
* *
8452625 TTATTTATAAGATTATTATT
1 TTATTTATAAAACTATTATT
8452645 TTATTTATAAAACTATTATT
1 TTATTTATAAAACTATTATT
8452665 TTA
1 TTA
8452668 ATAAATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (20 bp):
TTATTTATAAAACTATTATT
Found at i:8452910 original size:62 final size:59
Alignment explanation
Indices: 8452781--8452917 Score: 154
Period size: 62 Copynumber: 2.3 Consensus size: 59
8452771 TTTAAAGTTT
* * * *
8452781 TTAAATTT-TAATT-TTTTAAGAATTTAAGACTAAATTGATAGAATGTATAAAGTTGAGGA
1 TTAAATTTATTATTATTTT-AG-ATTTAAGACTAAATTGATAGAATGTATAAAATAGAGAA
*
8452840 TTAAATTTATTGATTATTTTAGATTTATGACTAAATTGATAGAATATGTA-AACAATAGAGAA
1 TTAAATTTATT-ATTATTTTAGATTTAAGACTAAATTGATAG-A-ATGTATAA-AATAGAGAA
8452902 TTAAATTTATTATTAT
1 TTAAATTTATTATTAT
8452918 GCTAATAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
59 8 0.12
60 20 0.30
61 13 0.19
62 26 0.39
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.43
Consensus pattern (59 bp):
TTAAATTTATTATTATTTTAGATTTAAGACTAAATTGATAGAATGTATAAAATAGAGAA
Found at i:8453486 original size:19 final size:19
Alignment explanation
Indices: 8453462--8453498 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
8453452 AATAAAGTTT
8453462 ATTTT-ATTTTATTTTAATA
1 ATTTTAATTTT-TTTTAATA
8453481 ATTTTAATTTTTTTTAAT
1 ATTTTAATTTTTTTTAAT
8453499 TTAATCACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTAATTTTTTTTAATA
Found at i:8453510 original size:24 final size:25
Alignment explanation
Indices: 8453462--8453511 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
8453452 AATAAAGTTT
* *
8453462 ATTTTATTTTATTTTAATAATTTTA
1 ATTTTATTTTAATTTAATAACTTTA
*
8453487 ATTTT-TTTTAATTTAATCACTTTA
1 ATTTTATTTTAATTTAATAACTTTA
8453511 A
1 A
8453512 ATAAATTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (25 bp):
ATTTTATTTTAATTTAATAACTTTA
Found at i:8464933 original size:13 final size:13
Alignment explanation
Indices: 8464915--8464979 Score: 66
Period size: 13 Copynumber: 5.2 Consensus size: 13
8464905 ATAGTTTAAT
8464915 AATAAAATAAAGA
1 AATAAAATAAAGA
8464928 AATAAAATAAAGA
1 AATAAAATAAAGA
8464941 AAT-AAAT---GA
1 AATAAAATAAAGA
*
8464950 AATAAAAGAAATGA
1 AATAAAATAAA-GA
*
8464964 AATATAATAAATGA
1 AATAAAATAAA-GA
8464978 AA
1 AA
8464980 AAGAAAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
9 5 0.11
10 3 0.07
12 4 0.09
13 16 0.36
14 16 0.36
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.18
Consensus pattern (13 bp):
AATAAAATAAAGA
Found at i:8464953 original size:9 final size:9
Alignment explanation
Indices: 8464927--8464979 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
8464917 TAAAATAAAG
*
8464927 AAATAAAAT
1 AAATGAAAT
8464936 AAA-GAAAT
1 AAATGAAAT
8464944 AAATGAAAT
1 AAATGAAAT
*
8464953 AAAAGAAAT
1 AAATGAAAT
8464962 GAAAT-ATAAT
1 -AAATGA-AAT
8464972 AAATGAAA
1 AAATGAAA
8464980 AAGAAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
8 7 0.19
9 23 0.62
10 7 0.19
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (9 bp):
AAATGAAAT
Found at i:8464963 original size:14 final size:14
Alignment explanation
Indices: 8464944--8464979 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8464934 ATAAAGAAAT
8464944 AAATGAAATAAAAG
1 AAATGAAATAAAAG
* *
8464958 AAATGAAATATAAT
1 AAATGAAATAAAAG
8464972 AAATGAAA
1 AAATGAAA
8464980 AAGAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.19
Consensus pattern (14 bp):
AAATGAAATAAAAG
Found at i:8465312 original size:15 final size:15
Alignment explanation
Indices: 8465289--8465336 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
8465279 TATCAAATTT
8465289 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
8465304 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
8465319 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
8465333 ATAT
1 ATAT
8465337 ATTATATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:8467681 original size:16 final size:16
Alignment explanation
Indices: 8467662--8467692 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8467652 TTTATTATTT
8467662 TATTAACATAATATAA
1 TATTAACATAATATAA
*
8467678 TATTAATATAATATA
1 TATTAACATAATATA
8467693 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:8468027 original size:21 final size:21
Alignment explanation
Indices: 8467963--8468031 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
8467953 AATAATGCTA
*
8467963 ATAATAATCTAATATAAAACC
1 ATAATAATTTAATATAAAACC
* **
8467984 ATAAT--GTTAAT-TAATAATT
1 ATAATAATTTAATATAA-AACC
8468003 ATAATAATTTAATATAAAACC
1 ATAATAATTTAATATAAAACC
8468024 ATAATAAT
1 ATAATAAT
8468032 AATCATTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 11 0.30
21 20 0.54
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (21 bp):
ATAATAATTTAATATAAAACC
Found at i:8468633 original size:23 final size:23
Alignment explanation
Indices: 8468605--8468662 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
8468595 TAATATTCCG
8468605 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
8468628 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
8468651 GGTGTGTTTGGG
1 GGTGTGTTTGGG
8468663 AGGAATCCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.07, C:0.03, G:0.43, T:0.47
Consensus pattern (23 bp):
GGTGTGTTTGGGTTGGATATTCT
Found at i:8468788 original size:18 final size:19
Alignment explanation
Indices: 8468767--8468807 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8468757 AATGAAATGA
8468767 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
8468785 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
8468804 GAAA
1 GAAA
8468808 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:8469700 original size:20 final size:20
Alignment explanation
Indices: 8469675--8469714 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8469665 AATATTTTCT
*
8469675 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
8469695 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
8469715 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:8469717 original size:34 final size:35
Alignment explanation
Indices: 8469663--8469729 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8469653 CAAACAGCAG
* *
8469663 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
8469698 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
8469730 CATTTTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:8469721 original size:14 final size:14
Alignment explanation
Indices: 8469698--8469737 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
8469688 ACAGAAAAGT
*
8469698 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
8469712 AAATCATTTTACGG
1 AAAACATTTTACAG
8469726 AAAACATTTTAC
1 AAAACATTTTAC
8469738 TAGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:8472106 original size:141 final size:141
Alignment explanation
Indices: 8471852--8472136 Score: 543
Period size: 141 Copynumber: 2.0 Consensus size: 141
8471842 TTTCTATTGA
* * *
8471852 AAAAGAGTACATGATTGTGATGTGTATTGATCCCACTGCAAAGTAGAGTAGATAGTGGACTAGTA
1 AAAAGAGTACATGATTGTGATGTGTACTAATCCCAATGCAAAGTAGAGTAGATAGTGGACTAGTA
8471917 TTACAACCTTCTTGAACTTGCCATATTTTTTTATCACTTTCAAGAAGATACAAATTGCATGTATA
66 TTACAACCTTCTTGAACTTGCCATATTTTTTTATCACTTTCAAGAAGATACAAATTGCATGTATA
8471982 ACAGAGTTTTC
131 ACAGAGTTTTC
8471993 AAAAGAGTACATGATTGTGATGTGTACTAATCCCAATGCAAAGTAGAGTAGATAGTGGACTAGTA
1 AAAAGAGTACATGATTGTGATGTGTACTAATCCCAATGCAAAGTAGAGTAGATAGTGGACTAGTA
8472058 TTACAACCTTCTTGAACTTGCCATATTTTTTTATCACTTTCAAGAAGATACAAATTGCATGTATA
66 TTACAACCTTCTTGAACTTGCCATATTTTTTTATCACTTTCAAGAAGATACAAATTGCATGTATA
8472123 ACAGAGTTTTC
131 ACAGAGTTTTC
8472134 AAA
1 AAA
8472137 GTGGGACCGT
Statistics
Matches: 141, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (141 bp):
AAAAGAGTACATGATTGTGATGTGTACTAATCCCAATGCAAAGTAGAGTAGATAGTGGACTAGTA
TTACAACCTTCTTGAACTTGCCATATTTTTTTATCACTTTCAAGAAGATACAAATTGCATGTATA
ACAGAGTTTTC
Found at i:8478002 original size:5 final size:5
Alignment explanation
Indices: 8477992--8478021 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
8477982 TTTCTTTTAT
8477992 ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA
8478022 CTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:8478648 original size:20 final size:19
Alignment explanation
Indices: 8478612--8478665 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
8478602 TATATAATTT
*
8478612 ATATTTTAAAAAA-TATTA
1 ATATTATAAAAAATTATTA
8478630 ATTATTATAAAAAATTATTA
1 A-TATTATAAAAAATTATTA
*
8478650 ATATGATAAAATAATT
1 ATATTATAAAA-AATT
8478666 TCTAAACAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 1 0.03
19 20 0.65
20 10 0.32
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
ATATTATAAAAAATTATTA
Found at i:8479388 original size:16 final size:16
Alignment explanation
Indices: 8479367--8479397 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8479357 TAAAAATATA
*
8479367 ATATAATATTTATAAT
1 ATATAACATTTATAAT
8479383 ATATAACATTTATAA
1 ATATAACATTTATAA
8479398 AAAATTTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATAACATTTATAAT
Found at i:8479818 original size:24 final size:23
Alignment explanation
Indices: 8479790--8479850 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 23
8479780 GCTTATAATA
* *
8479790 TAATTTTTATAAATTGTATAAAAG
1 TAATTTTTTTAAA-TATATAAAAG
*
8479814 TAATTTTTTTGACATATATAAAAG
1 TAATTTTTTT-AAATATATAAAAG
8479838 TAATTTTTTTAAA
1 TAATTTTTTTAAA
8479851 ATTAGATTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 2 0.06
24 28 0.88
25 2 0.06
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (23 bp):
TAATTTTTTTAAATATATAAAAG
Found at i:8481523 original size:16 final size:16
Alignment explanation
Indices: 8481487--8481521 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
8481477 AAATATCATT
8481487 ATTTATATTAGAAATA
1 ATTTATATTAGAAATA
8481503 ATTTATATTAG-AATA
1 ATTTATATTAGAAATA
8481518 ATTT
1 ATTT
8481522 TAAAAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (16 bp):
ATTTATATTAGAAATA
Found at i:8481961 original size:26 final size:25
Alignment explanation
Indices: 8481913--8481976 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 25
8481903 TGTTTATTTT
* * *
8481913 TTTAAAAATATTTTATATATTATCAA
1 TTTATAAATAATTTAAATATTAT-AA
* *
8481939 TTTATAAATAATTTAAATTTTATAT
1 TTTATAAATAATTTAAATATTATAA
*
8481964 TTTATATATAATT
1 TTTATAAATAATT
8481977 ATATTAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 13 0.41
26 19 0.59
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
TTTATAAATAATTTAAATATTATAA
Found at i:8481985 original size:38 final size:40
Alignment explanation
Indices: 8481920--8481994 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
8481910 TTTTTTAAAA
* *
8481920 ATATTTTATATATTATCAATTTATAAATAATTTAAATTTT
1 ATATTTTATATATAATCAATATATAAATAATTTAAATTTT
* *
8481960 ATATTTTATATATAAT-TATAT-TAAATTATTTAAAT
1 ATATTTTATATATAATCAATATATAAATAATTTAAAT
8481995 ATCATATATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 13 0.42
39 3 0.10
40 15 0.48
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (40 bp):
ATATTTTATATATAATCAATATATAAATAATTTAAATTTT
Found at i:8481996 original size:24 final size:23
Alignment explanation
Indices: 8481964--8482010 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
8481954 AATTTTATAT
*
8481964 TTTATATATAATTATATTAAATTA
1 TTTAAATATAA-TATATTAAATTA
* *
8481988 TTTAAATATCATATATTTAATTA
1 TTTAAATATAATATATTAAATTA
8482011 AATTTTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTAAATATAATATATTAAATTA
Found at i:8482003 original size:40 final size:40
Alignment explanation
Indices: 8481920--8482005 Score: 95
Period size: 40 Copynumber: 2.1 Consensus size: 40
8481910 TTTTTTAAAA
* * *
8481920 ATATTTTATATATTATCAATTTATAAATAATTTAAATTTT
1 ATATTTTATATATAATCAATATATAAATAATTTAAATTAT
* *
8481960 ATATTTTATATATAAT-TATAT-TAAATTATTTAAATATCAT
1 ATATTTTATATATAATCAATATATAAATAATTTAAAT-T-AT
8482000 ATATTT
1 ATATTT
8482006 AATTAAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
38 13 0.33
39 4 0.10
40 22 0.56
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (40 bp):
ATATTTTATATATAATCAATATATAAATAATTTAAATTAT
Found at i:8485322 original size:22 final size:21
Alignment explanation
Indices: 8485297--8485344 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
8485287 ATTTTTTTTC
8485297 AAATATATAAAATTATATATTT
1 AAATATATAAAATT-TATATTT
* * *
8485319 AAATTTGTAAAGTTTATATTT
1 AAATATATAAAATTTATATTT
*
8485340 TAATA
1 AAATA
8485345 ATTAATATTT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (21 bp):
AAATATATAAAATTTATATTT
Found at i:8487381 original size:22 final size:23
Alignment explanation
Indices: 8487353--8487413 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
8487343 AAATCGAAGA
* *
8487353 ATATATATAATTTTATATA-AAT
1 ATATATATATTTTTATATATAAC
*
8487375 ATATATA-ATTTTTATCTATAAC
1 ATATATATATTTTTATATATAAC
*
8487397 ATGTATATATTTTTATA
1 ATATATATATTTTTATA
8487414 CATTCTATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
21 9 0.28
22 15 0.47
23 8 0.25
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (23 bp):
ATATATATATTTTTATATATAAC
Found at i:8487408 original size:23 final size:21
Alignment explanation
Indices: 8487352--8487412 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 21
8487342 AAAATCGAAG
*
8487352 AATATATATAATTTTA-TATA
1 AATATATATATTTTTATTATA
8487372 AATATATATAATTTTTATCTATA
1 AATATATAT-ATTTTTAT-TATA
*
8487395 ACATGTATATATTTTTAT
1 A-ATATATATATTTTTAT
8487413 ACATTCTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 9 0.26
21 6 0.17
23 13 0.37
24 7 0.20
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (21 bp):
AATATATATATTTTTATTATA
Found at i:8491996 original size:14 final size:15
Alignment explanation
Indices: 8491977--8492005 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8491967 TTCAGGAAAT
8491977 TATTTT-CTGGCAAA
1 TATTTTACTGGCAAA
8491991 TATTTTACTGGCAAA
1 TATTTTACTGGCAAA
8492006 CAAACAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (15 bp):
TATTTTACTGGCAAA
Found at i:8501124 original size:55 final size:55
Alignment explanation
Indices: 8501040--8501159 Score: 231
Period size: 55 Copynumber: 2.2 Consensus size: 55
8501030 TCTGGGGCAC
8501040 CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGACTGTGATTAAT
1 CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGACTGTGATTAAT
*
8501095 CTATTCCCTTTTTATTCATTTTGTATTCCAGTAATGTTTGTTGACTGTGATTAAT
1 CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGACTGTGATTAAT
8501150 CTATTCCCTT
1 CTATTCCCTT
8501160 CAAATTTTGT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 64 1.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (55 bp):
CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGACTGTGATTAAT
Found at i:8501802 original size:44 final size:43
Alignment explanation
Indices: 8501668--8501812 Score: 141
Period size: 44 Copynumber: 3.3 Consensus size: 43
8501658 ACCTTAACCA
*
8501668 CCTAAGCAGTAGGGTAACAGGCTGAAGATATAGATCTTATCAC
1 CCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCAC
* * * * ** * * *
8501711 CCTAAGCATTAGGGAAAC-AGATCAAAGGCA-ACGAGCTTTAACCC
1 CCTAAGCAGTAGGGTAACAAGCT-GAAGATATA-GATC-TTATCAC
*
8501755 CCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCAC
1 CCTAAGCAGTAGGGTAACAAGCTGAAG-ATATAGATCTTATCAC
8501799 CCTAAGCAGTAGGG
1 CCTAAGCAGTAGGG
8501813 AAGCAGATCA
Statistics
Matches: 77, Mismatches: 19, Indels: 11
0.72 0.18 0.10
Matches are distributed among these distances:
42 3 0.04
43 23 0.30
44 43 0.56
45 7 0.09
46 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (43 bp):
CCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCAC
Found at i:8501820 original size:88 final size:87
Alignment explanation
Indices: 8501661--8501824 Score: 274
Period size: 88 Copynumber: 1.9 Consensus size: 87
8501651 TCACCAGACC
* *
8501661 TTAACCACCTAAGCAGTAGGGTAACAGGCTGAAGATATAGATCTTATCACCCTAAGCATTAGGGA
1 TTAACCACCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCACCCTAAGCAGTAGGGA
8501726 AACAGATCAAAGGCAACGAGCT
66 AACAGATCAAAGGCAACGAGCT
* *
8501748 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCACCCTAAGCAGTAGGG
1 TTAACCACCTAAGCAGTAGGGTAACAAGCTGAAG-ATATAGATCTTATCACCCTAAGCAGTAGGG
*
8501813 AAGCAGATCAAA
65 AAACAGATCAAA
8501825 AGACGGCGAA
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
87 32 0.45
88 39 0.55
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (87 bp):
TTAACCACCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCACCCTAAGCAGTAGGGA
AACAGATCAAAGGCAACGAGCT
Found at i:8502254 original size:43 final size:42
Alignment explanation
Indices: 8502196--8502345 Score: 133
Period size: 43 Copynumber: 3.5 Consensus size: 42
8502186 GAGCTTCAAC
* * *
8502196 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
1 CCCCTAAGCAGTAGGGTAACAAGTC-AATTTACAAACCTTAAA
* * * * *
8502239 CCCCTAAGCAGTAGGGTAATAGGTTGAATTTACAGATC-TAAA
1 CCCCTAAGCAGTAGGGTAACAAG-TCAATTTACAAACCTTAAA
* * * *
8502281 CCCCTAAGCAGTAGGGAAAC-AGATCAATGATGACAAGCCTTAAC
1 CCCCTAAGCAGTAGGGTAACAAG-TCAAT--TTACAAACCTTAAA
8502325 CCCCTAAGCAGTAGGGTAACA
1 CCCCTAAGCAGTAGGGTAACA
8502346 GGCTGAAAAT
Statistics
Matches: 83, Mismatches: 19, Indels: 8
0.75 0.17 0.07
Matches are distributed among these distances:
41 5 0.06
42 22 0.27
43 34 0.41
44 22 0.27
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (42 bp):
CCCCTAAGCAGTAGGGTAACAAGTCAATTTACAAACCTTAAA
Found at i:8503298 original size:23 final size:25
Alignment explanation
Indices: 8503272--8503318 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8503262 TATCATTCAT
*
8503272 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
8503295 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
8503319 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:8503639 original size:46 final size:46
Alignment explanation
Indices: 8503579--8503760 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
8503569 TTTGACATGA
* * * * * *
8503579 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
8503625 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
8503671 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
8503717 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
8503761 AGAGCATACT
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 3 0.02
46 124 0.98
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:8507808 original size:15 final size:15
Alignment explanation
Indices: 8507788--8507831 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
8507778 ATATTGTAAA
8507788 TATCATATTATGTTT
1 TATCATATTATGTTT
*
8507803 TATCATGTATATGTTT
1 TATCATAT-TATGTTT
8507819 TAAT-ATATTATGT
1 T-ATCATATTATGT
8507832 GTATATTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 12 0.48
16 11 0.44
17 2 0.08
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.57
Consensus pattern (15 bp):
TATCATATTATGTTT
Found at i:8507911 original size:24 final size:25
Alignment explanation
Indices: 8507856--8507911 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
8507846 GTATGTTATG
* *
8507856 TATATATTATGTATATGCTTTTAAA
1 TATATATTATATATATGATTTTAAA
* *
8507881 TAT-TATTATATATCT-ATTTTCAA
1 TATATATTATATATATGATTTTAAA
8507904 TATATATT
1 TATATATT
8507912 TATGTAATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 9 0.35
24 14 0.54
25 3 0.12
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (25 bp):
TATATATTATATATATGATTTTAAA
Found at i:8517000 original size:50 final size:50
Alignment explanation
Indices: 8516925--8517023 Score: 155
Period size: 50 Copynumber: 2.0 Consensus size: 50
8516915 GCCACACTTA
* * *
8516925 TTGAAAAGAGGGAAACACAATCTTCCTAGGATAATGAAGAAAAGAAAACG
1 TTGAAAAGAGGGAAAAACAATCTTCCTAGAAAAATGAAGAAAAGAAAACG
8516975 TTGAAAAG-GGAGAAAAACAATCTTCCTAGAAAAATGAAGAAAAGAAAAC
1 TTGAAAAGAGG-GAAAAACAATCTTCCTAGAAAAATGAAGAAAAGAAAAC
8517024 AGCAAAAGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.04
50 43 0.96
ACGTcount: A:0.54, C:0.11, G:0.20, T:0.15
Consensus pattern (50 bp):
TTGAAAAGAGGGAAAAACAATCTTCCTAGAAAAATGAAGAAAAGAAAACG
Found at i:8517041 original size:50 final size:49
Alignment explanation
Indices: 8516941--8517040 Score: 121
Period size: 50 Copynumber: 2.0 Consensus size: 49
8516931 AGAGGGAAAC
* * * ** *
8516941 ACAATCTTCCTAGGATAATGAAGAAAAGAAAACGTTGAAAAGGGAGAAAA
1 ACAATCTTCCTAGAAAAATGAAGAAAAGAAAACG-TCAAAAGAAAAAAAA
8516991 ACAATCTTCCTAGAAAAATGAAGAAAAGAAAACAG-CAAAAGAAAAAAAA
1 ACAATCTTCCTAGAAAAATGAAGAAAAGAAAAC-GTCAAAAGAAAAAAAA
8517040 A
1 A
8517041 AACTAACCAT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
49 11 0.26
50 31 0.72
51 1 0.02
ACGTcount: A:0.59, C:0.11, G:0.17, T:0.13
Consensus pattern (49 bp):
ACAATCTTCCTAGAAAAATGAAGAAAAGAAAACGTCAAAAGAAAAAAAA
Found at i:8519942 original size:26 final size:26
Alignment explanation
Indices: 8519912--8519965 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
8519902 CTATAAAAAG
8519912 TTACAAAATAATTATCTAACTAGGCT
1 TTACAAAATAATTATCTAACTAGGCT
8519938 TTACAAAATAATTATCTAACTAGGCT
1 TTACAAAATAATTATCTAACTAGGCT
8519964 TT
1 TT
8519966 TTTTTTGGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (26 bp):
TTACAAAATAATTATCTAACTAGGCT
Found at i:8521222 original size:18 final size:17
Alignment explanation
Indices: 8521199--8521249 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
8521189 TGATTTCACA
8521199 AAAAAAAATTAAAAAGAT
1 AAAAAAAATTAAAAA-AT
* *
8521217 AAAAAAAATGAAAAATT
1 AAAAAAAATTAAAAAAT
8521234 AAATAAAAGATTAAAA
1 AAA-AAAA-ATTAAAA
8521250 TGATTTTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 4 0.14
18 18 0.64
19 6 0.21
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (17 bp):
AAAAAAAATTAAAAAAT
Found at i:8542768 original size:13 final size:14
Alignment explanation
Indices: 8542745--8542773 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8542735 CGGTTTAGTC
8542745 TATATTAATTTTTT
1 TATATTAATTTTTT
8542759 TATA-TAATTTTTT
1 TATATTAATTTTTT
8542772 TA
1 TA
8542774 AAATATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TATATTAATTTTTT
Found at i:8542815 original size:8 final size:9
Alignment explanation
Indices: 8542789--8542813 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8542779 TATATAATAC
8542789 ATTAAAAAT
1 ATTAAAAAT
8542798 ATTAAAAAT
1 ATTAAAAAT
8542807 ATTAAAA
1 ATTAAAA
8542814 TAAATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:8547138 original size:31 final size:31
Alignment explanation
Indices: 8547103--8547165 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
8547093 TACAGATAAT
8547103 TTAATTTTAATTTTACGGATTTATATAAAAG
1 TTAATTTTAATTTTACGGATTTATATAAAAG
8547134 TTAATTTTAATTTTACGGATTTATATAAAAG
1 TTAATTTTAATTTTACGGATTTATATAAAAG
8547165 T
1 T
8547166 GCATTTTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (31 bp):
TTAATTTTAATTTTACGGATTTATATAAAAG
Found at i:8547172 original size:31 final size:31
Alignment explanation
Indices: 8547105--8547172 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
8547095 CAGATAATTT
*
8547105 AATTTTAATTTTACGGATTTATATAAAAGTT
1 AATTTTAATTTTACGGATTTATATAAAAGTG
8547136 AATTTTAATTTTACGGATTTATATAAAAGTG
1 AATTTTAATTTTACGGATTTATATAAAAGTG
*
8547167 CATTTT
1 AATTTT
8547173 TCTCTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (31 bp):
AATTTTAATTTTACGGATTTATATAAAAGTG
Found at i:8551963 original size:3 final size:3
Alignment explanation
Indices: 8551949--8551989 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
8551939 GTTTTACAGG
* *
8551949 TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC CTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
8551990 AAATAAAAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:8552259 original size:7 final size:7
Alignment explanation
Indices: 8552247--8552284 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
8552237 AGCCCAAGGC
8552247 TTTTTTA
1 TTTTTTA
8552254 TTTTTTA
1 TTTTTTA
8552261 TTTTTTA
1 TTTTTTA
8552268 TTTTTTA
1 TTTTTTA
8552275 TTTTTT-
1 TTTTTTA
8552281 TTTT
1 TTTT
8552285 GACTATTTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.13
7 27 0.87
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:8561913 original size:43 final size:43
Alignment explanation
Indices: 8561832--8561914 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
8561822 ATTATTTTTA
* * **
8561832 AAATTTTTTAGTGCCGTCACTTCACATAGTGTGTCCAAAATTT
1 AAATTTTTTAGTCCCGCCACTTCACATAGTGTCACCAAAATTT
** *
8561875 AAATTTTTTAGTCCCGCCACTTCATGTGGTGTCACCAAAA
1 AAATTTTTTAGTCCCGCCACTTCACATAGTGTCACCAAAA
8561915 ACAGTAAAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (43 bp):
AAATTTTTTAGTCCCGCCACTTCACATAGTGTCACCAAAATTT
Found at i:8569808 original size:28 final size:27
Alignment explanation
Indices: 8569741--8569816 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
8569731 GAAGTACATA
* * *
8569741 TTTTTAATTATAAAAATGCAATGCACG
1 TTTTTAATTATAAAAATGTAATACAAG
* *
8569768 TTTTTAATTATAAAATTGTAATACAAAT
1 TTTTTAATTATAAAAATGTAATAC-AAG
8569796 TTTTTAATTATAAAAATGTAA
1 TTTTTAATTATAAAAATGTAA
8569817 CCCATACTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.50
28 21 0.50
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (27 bp):
TTTTTAATTATAAAAATGTAATACAAG
Found at i:8569827 original size:28 final size:28
Alignment explanation
Indices: 8569735--8569830 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
8569725 AATTTTGAAG
*
8569735 TACATA-TTTTTAATTATAAAAATGCAA
1 TACATACTTTTTAATTATAAAAATGTAA
* *
8569762 TGC--ACGTTTTTAATTATAAAATTGTAA
1 TACATAC-TTTTTAATTATAAAAATGTAA
* *
8569789 TACAAATTTTTTAATTATAAAAATGTAA
1 TACATACTTTTTAATTATAAAAATGTAA
**
8569817 CCCATACTTTTTAA
1 TACATACTTTTTAA
8569831 ACATTAAATA
Statistics
Matches: 55, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
25 1 0.02
27 23 0.42
28 30 0.55
29 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (28 bp):
TACATACTTTTTAATTATAAAAATGTAA
Found at i:8582716 original size:18 final size:19
Alignment explanation
Indices: 8582693--8582739 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
8582683 GGTTTAATTG
8582693 AATAAATCA-TTAAAAAAT
1 AATAAATCATTTAAAAAAT
8582711 AATAAAAAT-ATTTAAAAAAT
1 AAT--AAATCATTTAAAAAAT
*
8582731 AAAAAATCA
1 AATAAATCA
8582740 GTTCAATCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
18 7 0.29
19 2 0.08
20 15 0.62
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (19 bp):
AATAAATCATTTAAAAAAT
Found at i:8584661 original size:42 final size:40
Alignment explanation
Indices: 8584544--8584671 Score: 112
Period size: 42 Copynumber: 3.0 Consensus size: 40
8584534 ATCTCAATGC
* * **
8584544 AGTGCATCATCAGATAACTGAAGGAAAGATATTGGCACACA
1 AGTGCATCATCAAATAACTGAA-GAAATATATTGGCACGTA
* * * *
8584585 TAGTGCATCATCGATTAAACCGAAGCAATCATATTGGCACGTA
1 -AGTGCATCATCAAAT-AACTGAAGAAAT-ATATTGGCACGTA
*
8584628 AGTGCATCATCAAATGCACTGAAGAAAATATATTGGCACTGTA
1 AGTGCATCATCAAAT-AACTGAAG-AAATATATTGGCAC-GTA
8584671 A
1 A
8584672 CACCCCCTAC
Statistics
Matches: 68, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
42 44 0.65
43 24 0.35
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (40 bp):
AGTGCATCATCAAATAACTGAAGAAATATATTGGCACGTA
Found at i:8585192 original size:16 final size:17
Alignment explanation
Indices: 8585161--8585193 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8585151 TTCATAAGTA
*
8585161 TATATCCATCATTTCAT
1 TATATCAATCATTTCAT
8585178 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
8585194 GCTCCATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:8585539 original size:46 final size:46
Alignment explanation
Indices: 8585474--8585881 Score: 577
Period size: 46 Copynumber: 8.9 Consensus size: 46
8585464 TTATCTTTGA
* * * * * *
8585474 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* *** *
8585520 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** ** ***
8585566 TACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
8585611 CATGTTGCCCTGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
8585657 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTGATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
8585703 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
8585749 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
8585795 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
8585841 CATGTTGCCATGGTATCTTTCAACTATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
8585882 TATTTCAGAA
Statistics
Matches: 330, Mismatches: 30, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
45 41 0.12
46 289 0.88
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:8590644 original size:22 final size:21
Alignment explanation
Indices: 8590616--8590683 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 21
8590606 TATGCACTAT
*
8590616 TAAACAGAGAGCACTAAAGTGC
1 TAAACAGAGAGCA-TAATGTGC
*
8590638 TATACAGAGAGCATGAATGTGC
1 TAAACAGAGAGCAT-AATGTGC
*
8590660 TAAACAAAGAGCATTAATGTGC
1 TAAACAGAGAGCA-TAATGTGC
8590682 TA
1 TA
8590684 GTAATCGGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.03
22 38 0.95
23 1 0.03
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.21
Consensus pattern (21 bp):
TAAACAGAGAGCATAATGTGC
Found at i:8592928 original size:35 final size:35
Alignment explanation
Indices: 8592901--8593373 Score: 533
Period size: 35 Copynumber: 13.6 Consensus size: 35
8592891 CATGGTAAAG
*
8592901 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
*
8592936 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* *
8592971 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* *
8593006 TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
*
8593041 TGT-AATACGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAA-ACGTAGGTATGGTATCATCCATACTGAGT
* *
8593076 TGTAAAACGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* * * *
8593111 TGTGAAACATAGGTATGGTATTAACCATACTGAGC
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* * *
8593146 TGTGAAATGTAGGTATGGTAT-TTCCATACTGAGC
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* * *
8593180 TGTGAAACGTAAGTATGGTAT-TTCCATACTGAGC
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* * *
8593214 TGTGAAACGTAGATATGG-AGTCGTCCATACTGAGC
1 TGTGAAACGTAGGTATGGTA-TCATCCATACTGAGT
* * * *
8593249 TATGATACGTAGGTATGGCATCGTCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* ** ** *
8593284 TATGAAATATAGGTATGGTATTTTCCATACCGAG-
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
** * * ** *
8593318 CATGAAAAGTAGGTATGGTGTTTTCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
*
8593353 TGTGAAACATAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTAT
8593374 TTCAATGAGG
Statistics
Matches: 387, Mismatches: 45, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
33 1 0.00
34 92 0.24
35 291 0.75
36 3 0.01
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
Found at i:8595891 original size:46 final size:46
Alignment explanation
Indices: 8595827--8596095 Score: 358
Period size: 46 Copynumber: 5.6 Consensus size: 46
8595817 TTTGAGTACT
* *
8595827 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
8595873 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
8595919 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
8595971 TCTGATCAAGTGATAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTG---A---CAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
8596023 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
8596069 TCTGATCAAGTGACAAAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
8596096 GCTACACTTA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
49 1 0.01
52 85 0.43
55 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:8595952 original size:52 final size:51
Alignment explanation
Indices: 8595887--8596095 Score: 293
Period size: 52 Copynumber: 4.1 Consensus size: 51
8595877 ATCAAGTGAC
8595887 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-G
* *
8595939 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * *
8595990 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
8596037 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGTG
8596089 ATAAGTG
1 A-AAGTG
8596096 GCTACACTTA
Statistics
Matches: 140, Mismatches: 9, Indels: 15
0.85 0.05 0.09
Matches are distributed among these distances:
46 42 0.30
51 1 0.01
52 92 0.66
53 5 0.04
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:8595990 original size:7 final size:7
Alignment explanation
Indices: 8595973--8596006 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
8595963 TACACTTATC
8595973 TGATCAAG
1 TGAT-AAG
8595981 TGATAAG
1 TGATAAG
*
8595988 TGAAAAG
1 TGATAAG
8595995 TGATAAG
1 TGATAAG
8596002 TGATA
1 TGATA
8596007 GCTTCGGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.26
Consensus pattern (7 bp):
TGATAAG
Found at i:8596103 original size:37 final size:37
Alignment explanation
Indices: 8596059--8596204 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
8596049 GATAGCTTTA
**
8596059 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8596096 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
8596133 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
8596170 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8596205 ATCATACGTA
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 88 0.85
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:8599852 original size:10 final size:10
Alignment explanation
Indices: 8599837--8599864 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
8599827 TGAGTCAAGT
8599837 AAGAATTTAG
1 AAGAATTTAG
8599847 AAGAATTTAG
1 AAGAATTTAG
8599857 AAGAATTT
1 AAGAATTT
8599865 GTGAAATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (10 bp):
AAGAATTTAG
Found at i:8601240 original size:53 final size:53
Alignment explanation
Indices: 8601084--8601249 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
8601074 GACGAAAAAT
* **
8601084 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
8601136 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
8601189 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
8601243 TATGTGA
1 -ATGTGA
8601250 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:8607743 original size:53 final size:53
Alignment explanation
Indices: 8607588--8607752 Score: 219
Period size: 53 Copynumber: 3.1 Consensus size: 53
8607578 GACGAAAAAT
* * **
8607588 ATGTGATAA-GTG-TGCCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
*
8607639 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* *
8607692 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGATTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
8607746 TATGTGA
1 -ATGTGA
8607753 ACCGTGTAAG
Statistics
Matches: 101, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
51 9 0.09
52 4 0.04
53 81 0.80
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:8607797 original size:46 final size:47
Alignment explanation
Indices: 8607693--8607797 Score: 115
Period size: 46 Copynumber: 2.2 Consensus size: 47
8607683 ATCGGTATAA
* * **
8607693 TGTGATAATGTGATTCCGTATAAGACCATGTCTGGGATATGGCTTCGG
1 TGTG-TAATGTGATACCGTATAAGACCATGGCAAGGATATGGCTTCGG
* * *
8607741 TATG-ATATGTGA-ACCGTGTAAGACCATGGCAAGGCTATGGCTTCGG
1 TGTGTA-ATGTGATACCGTATAAGACCATGGCAAGGATATGGCTTCGG
8607787 TGTGTAATGTG
1 TGTGTAATGTG
8607798 TAACAATGTG
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
46 37 0.79
47 7 0.15
48 3 0.06
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.31
Consensus pattern (47 bp):
TGTGTAATGTGATACCGTATAAGACCATGGCAAGGATATGGCTTCGG
Found at i:8615247 original size:21 final size:20
Alignment explanation
Indices: 8615200--8615257 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
8615190 TACTAAACAC
**
8615200 AAAT-TATCGATACTTGATA
1 AAATGTATCGATACTTTTTA
*
8615219 AAAGGTATCGATACTTTTTGA
1 AAATGTATCGATACTTTTT-A
*
8615240 AAATGTATCAATACTTTT
1 AAATGTATCGATACTTTT
8615258 ATAATTAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 3 0.09
20 12 0.38
21 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (20 bp):
AAATGTATCGATACTTTTTA
Found at i:8617664 original size:20 final size:21
Alignment explanation
Indices: 8617632--8617678 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
8617622 TTGTTGAATT
8617632 AAAAAT-ATAATTATAAAA-AG
1 AAAAATAATAATTA-AAAATAG
*
8617652 AAAAATAAT-ATTAAAAATAT
1 AAAAATAATAATTAAAAATAG
8617672 AAAAATA
1 AAAAATA
8617679 GCAATATACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 4 0.17
20 18 0.75
21 2 0.08
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAAATAATAATTAAAAATAG
Found at i:8617753 original size:25 final size:25
Alignment explanation
Indices: 8617706--8617758 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
8617696 TGTTTTGTAG
* * *
8617706 AAAATTTTAAATATTTTTAATAATGT
1 AAAATTTAAAATAATATTAATAAT-T
8617732 AAAATTTAAAATAATATT-ATAATT
1 AAAATTTAAAATAATATTAATAATT
8617756 AAA
1 AAA
8617759 TAAAAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 4 0.17
25 5 0.21
26 15 0.62
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
AAAATTTAAAATAATATTAATAATT
Found at i:8618265 original size:10 final size:9
Alignment explanation
Indices: 8618244--8618289 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
8618234 TTAAAATTTT
*
8618244 AAAATATAA
1 AAAATATTA
8618253 AAAATATTA
1 AAAATATTA
8618262 AAAATCATTA
1 AAAAT-ATTA
*
8618272 AAATTATTA
1 AAAATATTA
8618281 AAAACTATT
1 AAAA-TATT
8618290 TTATTATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 20 0.62
10 12 0.38
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATATTA
Found at i:8618279 original size:19 final size:18
Alignment explanation
Indices: 8618234--8618289 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
8618224 AATTAATTTT
8618234 TTAAAATT-TT-AAAATA
1 TTAAAATTATTAAAAATA
* *
8618250 TAAAAAATATTAAAAATCA
1 TTAAAATTATTAAAAAT-A
8618269 TTAAAATTATTAAAAACTA
1 TTAAAATTATTAAAAA-TA
8618288 TT
1 TT
8618290 TTATTATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
16 6 0.19
17 2 0.06
18 5 0.16
19 18 0.56
20 1 0.03
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
TTAAAATTATTAAAAATA
Found at i:8618305 original size:16 final size:15
Alignment explanation
Indices: 8618275--8618314 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
8618265 ATCATTAAAA
*
8618275 TTATTAAAAACTATT
1 TTATTAAAAAATATT
8618290 TTATTATAAAAATATT
1 TTATTA-AAAAATATT
8618306 TT-TTAAAAA
1 TTATTAAAAA
8618315 TTCAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 9 0.39
16 10 0.43
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATTAAAAAATATT
Found at i:8627876 original size:15 final size:16
Alignment explanation
Indices: 8627856--8627889 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
8627846 TTGGCTTTTC
8627856 TATCTGAGTTTT-ATA
1 TATCTGAGTTTTAATA
8627871 TATCTGAGTTTTAATA
1 TATCTGAGTTTTAATA
8627887 TAT
1 TAT
8627890 TTGATCATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (16 bp):
TATCTGAGTTTTAATA
Found at i:8630141 original size:15 final size:15
Alignment explanation
Indices: 8630116--8630148 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
8630106 TACCCAATTA
8630116 CAACACCCAATA-CC
1 CAACACCCAATAGCC
8630130 CAACAGCCCAATAGCC
1 CAACA-CCCAATAGCC
8630146 CAA
1 CAA
8630149 AAATCATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.42, C:0.45, G:0.06, T:0.06
Consensus pattern (15 bp):
CAACACCCAATAGCC
Found at i:8631337 original size:14 final size:14
Alignment explanation
Indices: 8631316--8631348 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8631306 GCTCATTTAT
8631316 TTAT-TTATTATTA
1 TTATATTATTATTA
*
8631329 TTATATTATTATTT
1 TTATATTATTATTA
8631343 TTATAT
1 TTATAT
8631349 ATGTGCTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATTATTATTA
Found at i:8642600 original size:1 final size:1
Alignment explanation
Indices: 8642594--8642621 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
8642584 TTTGCTTCCT
8642594 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
8642622 CTTTGGAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8644065 original size:86 final size:88
Alignment explanation
Indices: 8643863--8644117 Score: 304
Period size: 86 Copynumber: 2.9 Consensus size: 88
8643853 CAGATCAATG
* * *
8643863 AAGACAAAGGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTC
1 AAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAA-ACACAAAGCCTTGCCTC
** * * * *
8643927 TTTCGGTTG-TGATAGAGCTGGTTG
65 CATCGGTTGCAG-TGGAGCTAGTTA
* *
8643951 AAGACAAAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAA-ACAAAGCCTTGCATCC
1 AAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCTCC
*
8644015 ATCGATTGCAGTGGAGCTAGTTA
66 ATCGGTTGCAGTGGAGCTAGTTA
** * *
8644038 AAGA-AGTAGGTCTTGCCTTCCTGCATTAACAGCGAAGCAGATC-AAAGACAAAGCCTTGCCTCC
1 AAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCTCC
*
8644101 ATCGGTTGCATTGGAGC
66 ATCGGTTGCAGTGGAGC
8644118 AGATTGAAGC
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
85 3 0.02
86 70 0.48
87 28 0.19
88 44 0.30
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (88 bp):
AAGACAAAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAACACAAAGCCTTGCCTCC
ATCGGTTGCAGTGGAGCTAGTTA
Found at i:8644156 original size:86 final size:85
Alignment explanation
Indices: 8643872--8644171 Score: 288
Period size: 86 Copynumber: 3.5 Consensus size: 85
8643862 GAAGACAAAG
* * * * **
8643872 GATCTTGCCTTTCTG-CATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 GATCTTGCCTTCCTGACATTAACAGCGAAGCAGATCAAAGACA-AAGCCTTGCCTCCATCGGTTG
* * * *
8643936 TGATAGAGCTGGTTGAAGACAAAA
65 -CATGGAGC-AGTTGAAG-CAAGA
* *
8643960 GATCTTGCCTTCCT-ACATTAACAGCGAAGCAGATCGAAA-ACAAAGCCTTGCATCCATCGATTG
1 GATCTTGCCTTCCTGACATTAACAGCGAAGCAGATC-AAAGACAAAGCCTTGCCTCCATCGGTTG
*
8644023 CAGTGGAGCTAGTTAAAG-AAGTA
65 CA-TGGAGC-AGTTGAAGCAAG-A
*
8644046 GGTCTTGCCTTCCTG-CATTAACAGCGAAGCAGATCAAAGACAAAGCCTTGCCTCCATCGGTTGC
1 GATCTTGCCTTCCTGACATTAACAGCGAAGCAGATCAAAGACAAAGCCTTGCCTCCATCGGTTGC
*
8644110 ATTGGAGCAGATTGAAGCCAGA
66 A-TGGAGCAG-TTGAAGCAAGA
** * * *
8644132 GATCTTATCTCCCTGAGATT-ACAGCGGAGCAGATCAAAGA
1 GATCTTGCCTTCCTGACATTAACAGCGAAGCAGATCAAAGA
8644172 TAGTAATCCT
Statistics
Matches: 178, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
85 7 0.04
86 101 0.57
87 33 0.19
88 35 0.20
89 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (85 bp):
GATCTTGCCTTCCTGACATTAACAGCGAAGCAGATCAAAGACAAAGCCTTGCCTCCATCGGTTGC
ATGGAGCAGTTGAAGCAAGA
Found at i:8644325 original size:46 final size:46
Alignment explanation
Indices: 8644253--8644508 Score: 201
Period size: 46 Copynumber: 5.8 Consensus size: 46
8644243 GAAGATCACA
* * * *
8644253 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAATT
* * *
8644299 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAG-ATA
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAATT
* * * **
8644344 T-A-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AA-T
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAATT
** * * * * * *
8644385 AAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCA--
1 TCA-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAATT
* * *
8644427 TCAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAATT
* *
8644473 GCAGATCTTATCCCCCTGAGGTTACAGTGGAGCAGA
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGA
8644509 TTGAAGCCAG
Statistics
Matches: 165, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
41 31 0.19
42 5 0.03
43 29 0.18
44 30 0.18
45 3 0.02
46 67 0.41
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (46 bp):
TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAATT
Found at i:8644406 original size:44 final size:44
Alignment explanation
Indices: 8644210--8644548 Score: 194
Period size: 46 Copynumber: 7.8 Consensus size: 44
8644200 TGGAGCGGAT
* * * *
8644210 TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC--ACA
1 TAAA-GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * * * *
8644253 T-CAGGTCTTATCTCCCTG-AGATTACAGTGGAACAGACCAAAGAA
1 TAAAGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAA-AA
** * * *
8644297 TTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGA
1 -TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * * *
8644342 TATA-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT-TAAAA
1 TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * * *
8644384 TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG--CA
1 TAAA-GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * * * * *
8644427 T-CAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAA
1 TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAA-AA
** * * * **
8644471 TTGCAGATCTTATCCCCCTGAGGTTACAGTGGAGCAGATTGAAGC
1 -TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * *
8644516 CAGAGGTCTTATCTCCCTGATA-TTACAGTGGAG
1 TAAAGATCTTATCTCCCTGA-AGTTACAGTGGAG
8644549 TAGACTTAAA
Statistics
Matches: 229, Mismatches: 51, Indels: 31
0.74 0.16 0.10
Matches are distributed among these distances:
40 2 0.01
41 58 0.25
42 8 0.03
43 33 0.14
44 58 0.25
45 3 0.01
46 66 0.29
47 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
Found at i:8644431 original size:174 final size:170
Alignment explanation
Indices: 8644131--8644514 Score: 565
Period size: 174 Copynumber: 2.2 Consensus size: 170
8644121 TTGAAGCCAG
* * *
8644131 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGATT
8644196 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
*
8644261 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTC
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTGC
8644301 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATA-TAATCCTATCTCCCTGA-AGT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGA-T
* * *
8644364 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
65 TACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATC
* * ** *
8644429 AGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGC
125 AGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTGC
* * *
8644475 AGATCTTATCCCCCTGAGGTTACAGTGGAGCAGATTGAAG
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAG
8644515 CCAGAGGTCT
Statistics
Matches: 193, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
168 1 0.01
169 30 0.16
170 42 0.22
174 120 0.62
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (170 bp):
AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTGC
Found at i:8644480 original size:87 final size:87
Alignment explanation
Indices: 8644215--8644553 Score: 292
Period size: 87 Copynumber: 3.9 Consensus size: 87
8644205 CGGATTAAAG
* * *
8644215 GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
* *
8644280 TGGAACAGACCAAAGAATTTCA
66 TGGAGCAGACCAAAGAATTACA
* ** * ** *
8644302 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAT-ATAATCCTATCTCCCTGA-AGTT
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCG--CATCA-GGTCTTATCTCCCTGAGA-TT
* ** *
8644365 ACAGTGGAGCGGA-TTAA-AA-TAAA
62 ACAGTGGAGCAGACCAAAGAATTACA
* * * *
8644388 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTACA
1 -GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
* * *
8644453 GTGGAGTAGACCGAAGAATTGCA
65 GTGGAGCAGACCAAAGAATTACA
* * * * * * *
8644476 GATCTTATCCCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGGTCTTATCTCCCTGATATTA
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCA-TC--AGGTCTTATCTCCCTGAGATTA
*
8644541 CAGTGGAGTAGAC
63 CAGTGGAGCAGAC
8644554 TTAAACCTAA
Statistics
Matches: 195, Mismatches: 44, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
85 27 0.14
86 5 0.03
87 96 0.49
88 7 0.04
89 28 0.14
90 32 0.16
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (87 bp):
GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
TGGAGCAGACCAAAGAATTACA
Found at i:8644529 original size:131 final size:128
Alignment explanation
Indices: 8644299--8644552 Score: 298
Period size: 131 Copynumber: 2.0 Consensus size: 128
8644289 CCAAAGAATT
* *
8644299 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAAGT
1 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATATAATCCTATCCCCCTGAAGT
* * *
8644364 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCA
66 TACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGATA-TTACAGTAGAGTAGATCGCA
* * * * *
8644427 TCAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTGCAGATCTTATCCCCCTG
1 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATA-T--A-ATCCTATCCCCCTG
* ** * *
8644491 AGGTTACAGTGGAGCAGATTGAAGCCAGAGG-TCTTATCTCCCTGATATTACAGTGGAGTAGA
62 AAGTTACAGTGGAGCAGATT-AAAACAAAGGATCTTATCTCCCTGATATTACAGTAGAGTAGA
8644553 CTTAAACCTA
Statistics
Matches: 105, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
127 1 0.01
128 39 0.37
130 1 0.01
131 57 0.54
132 7 0.07
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (128 bp):
TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATATAATCCTATCCCCCTGAAGT
TACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGATATTACAGTAGAGTAGATCGCA
Found at i:8644865 original size:15 final size:15
Alignment explanation
Indices: 8644840--8644872 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
8644830 TACCCAATTA
8644840 CAACACCCAATA-CC
1 CAACACCCAATAGCC
8644854 CAACAGCCCAATAGCC
1 CAACA-CCCAATAGCC
8644870 CAA
1 CAA
8644873 AAATCATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.42, C:0.45, G:0.06, T:0.06
Consensus pattern (15 bp):
CAACACCCAATAGCC
Found at i:8646060 original size:14 final size:14
Alignment explanation
Indices: 8646039--8646071 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8646029 GCTCATTTAT
8646039 TTAT-TTATTATTA
1 TTATATTATTATTA
*
8646052 TTATATTATTATTT
1 TTATATTATTATTA
8646066 TTATAT
1 TTATAT
8646072 ATGTGCTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATTATTATTA
Found at i:8654581 original size:21 final size:21
Alignment explanation
Indices: 8654555--8654597 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8654545 AGAATTAAAG
8654555 CAGAACCACGTCACAGAATAT
1 CAGAACCACGTCACAGAATAT
8654576 CAGAACCACGTCACAGAATAT
1 CAGAACCACGTCACAGAATAT
8654597 C
1 C
8654598 TGTGCACCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.30, G:0.14, T:0.14
Consensus pattern (21 bp):
CAGAACCACGTCACAGAATAT
Found at i:8675159 original size:12 final size:12
Alignment explanation
Indices: 8675142--8675167 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8675132 TGTAACTCCC
8675142 GCTACTGCTGCT
1 GCTACTGCTGCT
8675154 GCTACTGCTGCT
1 GCTACTGCTGCT
8675166 GC
1 GC
8675168 CGCTGCTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.35, G:0.27, T:0.31
Consensus pattern (12 bp):
GCTACTGCTGCT
Found at i:8680886 original size:26 final size:26
Alignment explanation
Indices: 8680857--8680915 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
8680847 ATATATAATA
* * * *
8680857 ATATATTATTTAATATTTAAGTAAAT
1 ATATATAATATAATAATAAAGTAAAT
8680883 ATATATAATATAATAATAAAGTAAAT
1 ATATATAATATAATAATAAAGTAAAT
8680909 ATA-ATAA
1 ATATATAA
8680916 ACAGGACAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (26 bp):
ATATATAATATAATAATAAAGTAAAT
Found at i:8680976 original size:9 final size:9
Alignment explanation
Indices: 8680943--8680997 Score: 53
Period size: 9 Copynumber: 6.2 Consensus size: 9
8680933 ATGAATAAAC
8680943 AAAGAAAGA
1 AAAGAAAGA
8680952 AACA-AAACGA
1 AA-AGAAA-GA
* *
8680962 ACAGAAAGG
1 AAAGAAAGA
8680971 AAAGAAAGA
1 AAAGAAAGA
8680980 AAAGAAA-A
1 AAAGAAAGA
8680988 AAA-AAAGA
1 AAAGAAAGA
8680996 AA
1 AA
8680998 GGAGAAAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
7 3 0.08
8 7 0.18
9 21 0.55
10 7 0.18
ACGTcount: A:0.76, C:0.05, G:0.18, T:0.00
Consensus pattern (9 bp):
AAAGAAAGA
Found at i:8687638 original size:42 final size:43
Alignment explanation
Indices: 8687557--8687638 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
8687547 AATACATACG
***
8687557 GTGGAGAGTTTCCTACATCAAAGGGTCATATATGTATAACCTT
1 GTGGAGAGTTTCCTACATCAAAGGGTCATATACCAATAACCTT
* * *
8687600 GTGGAGAGTTTCTTACATC-AAGGGTCATTTCCCAATAAC
1 GTGGAGAGTTTCCTACATCAAAGGGTCATATACCAATAAC
8687639 ATAAGCAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 15 0.45
43 18 0.55
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (43 bp):
GTGGAGAGTTTCCTACATCAAAGGGTCATATACCAATAACCTT
Found at i:8692044 original size:34 final size:34
Alignment explanation
Indices: 8692006--8692073 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
8691996 TGGTATTTTT
8692006 ACGTAGAGACATTCATGTCAAACATCCTTGAGTA
1 ACGTAGAGACATTCATGTCAAACATCCTTGAGTA
8692040 ACGTAGAGACATTCATGTCAAACATCCTTGAGTA
1 ACGTAGAGACATTCATGTCAAACATCCTTGAGTA
8692074 TTATTGCCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (34 bp):
ACGTAGAGACATTCATGTCAAACATCCTTGAGTA
Found at i:8696862 original size:17 final size:17
Alignment explanation
Indices: 8696840--8696873 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8696830 AAAATAGATT
*
8696840 TTAATTGAAATTTTTAA
1 TTAATTAAAATTTTTAA
8696857 TTAATTAAAATTTTTAA
1 TTAATTAAAATTTTTAA
8696874 ACTTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAATTAAAATTTTTAA
Found at i:8700034 original size:17 final size:17
Alignment explanation
Indices: 8700007--8700040 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8699997 AAGGGCGTTA
8700007 ACGTTCAGGTCA-TTTT
1 ACGTTCAGGTCAGTTTT
8700023 ACGTTGCAGGTCAGTTTT
1 ACGTT-CAGGTCAGTTTT
8700041 TCCCCATGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 7 0.44
18 4 0.25
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.41
Consensus pattern (17 bp):
ACGTTCAGGTCAGTTTT
Found at i:8703828 original size:40 final size:39
Alignment explanation
Indices: 8703770--8703848 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 39
8703760 TTTGAAAAGA
*
8703770 AGTTTGAGGTTGGTTATTGTTCTTAGTTCGATATTATATG
1 AGTTTGAGGTTGGCTATTGTTCTTAG-TCGATATTATATG
8703810 AGTTTGAGGTTGGCTATTGTTCTTAGTCGATATTATATG
1 AGTTTGAGGTTGGCTATTGTTCTTAGTCGATATTATATG
8703849 CATTTTACTA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 13 0.34
40 25 0.66
ACGTcount: A:0.20, C:0.06, G:0.25, T:0.48
Consensus pattern (39 bp):
AGTTTGAGGTTGGCTATTGTTCTTAGTCGATATTATATG
Found at i:8712147 original size:27 final size:27
Alignment explanation
Indices: 8712094--8712148 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
8712084 TTTGGATAAT
**
8712094 AATATATATCTTATCTTTTCTGATTAA
1 AATATATATCTTATCTTTTAAGATTAA
*
8712121 AATATATAT-TATATCTTTTAAGTTTAA
1 AATATATATCT-TATCTTTTAAGATTAA
8712148 A
1 A
8712149 CATGAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (27 bp):
AATATATATCTTATCTTTTAAGATTAA
Found at i:8713065 original size:15 final size:15
Alignment explanation
Indices: 8713047--8713080 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
8713037 AATTGGAAGA
*
8713047 GTTGATGTTGTTGTT
1 GTTGATGTTGATGTT
8713062 GTTGATGTTGATGTT
1 GTTGATGTTGATGTT
8713077 GTTG
1 GTTG
8713081 CACTCCTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.35, T:0.56
Consensus pattern (15 bp):
GTTGATGTTGATGTT
Found at i:8722367 original size:24 final size:22
Alignment explanation
Indices: 8722330--8722375 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
8722320 TAATTTATAT
8722330 ATAATATATATTTTCTTTGGTC
1 ATAATATATATTTTCTTTGGTC
*
8722352 ATAATCATATAATTTTTTTTGGTC
1 ATAAT-ATAT-ATTTTCTTTGGTC
8722376 GAAATTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 4 0.19
24 12 0.57
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.54
Consensus pattern (22 bp):
ATAATATATATTTTCTTTGGTC
Found at i:8723078 original size:24 final size:26
Alignment explanation
Indices: 8723036--8723085 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
8723026 ATTTTGATTT
*
8723036 AACTATTTAAAAATTATAAAAATATA
1 AACTATTTAAAAATGATAAAAATATA
*
8723062 AACTA-TT-AAAATGATAAAATTATA
1 AACTATTTAAAAATGATAAAAATATA
8723086 TTTTTACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.68
25 2 0.09
26 5 0.23
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (26 bp):
AACTATTTAAAAATGATAAAAATATA
Found at i:8723086 original size:26 final size:28
Alignment explanation
Indices: 8723018--8723086 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 28
8723008 ATCTTCTAAT
* *
8723018 ATGATAAAATTTTGATTTAACTATTTAAAA
1 ATGATAAAATTAT-A-TAAACTATTTAAAA
*
8723048 ATTATAAAA--ATATAAACTA-TT-AAA
1 ATGATAAAATTATATAAACTATTTAAAA
8723072 ATGATAAAATTATAT
1 ATGATAAAATTATAT
8723087 TTTTACTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
24 11 0.33
25 2 0.06
26 10 0.30
27 1 0.03
28 1 0.03
30 8 0.24
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.39
Consensus pattern (28 bp):
ATGATAAAATTATATAAACTATTTAAAA
Found at i:8724797 original size:11 final size:11
Alignment explanation
Indices: 8724781--8724805 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8724771 GTGAAGAGAC
8724781 TTATGGATATT
1 TTATGGATATT
8724792 TTATGGATATT
1 TTATGGATATT
8724803 TTA
1 TTA
8724806 ATGTGTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (11 bp):
TTATGGATATT
Found at i:8728263 original size:33 final size:33
Alignment explanation
Indices: 8728225--8728308 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
8728215 AATATATATT
* *
8728225 TTTTAAATATGTATAATTGAATTAAAATCAAAA
1 TTTTAAATATATATAATTGAATCAAAATCAAAA
* * *
8728258 TTTTAAATATATATACTTGAATCACAATTAAAA
1 TTTTAAATATATATAATTGAATCAAAATCAAAA
* *
8728291 TTTCATATATATATAATT
1 TTTTAAATATATATAATT
8728309 ACCCTAAATT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.43
Consensus pattern (33 bp):
TTTTAAATATATATAATTGAATCAAAATCAAAA
Found at i:8728678 original size:16 final size:16
Alignment explanation
Indices: 8728657--8728703 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
8728647 TTTGTTTCAC
*
8728657 TGTAATTGAATAGAGT
1 TGTAATTGAATAGAAT
*
8728673 TGTAATTGAATAAAAT
1 TGTAATTGAATAGAAT
*
8728689 TATAATTGAATAGAA
1 TGTAATTGAATAGAA
8728704 CTGTTTGGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.36
Consensus pattern (16 bp):
TGTAATTGAATAGAAT
Found at i:8734543 original size:21 final size:22
Alignment explanation
Indices: 8734514--8734560 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
8734504 CAGAAGGAGT
*
8734514 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
8734536 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
8734557 GAGT
1 GAGT
8734561 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:8737784 original size:14 final size:14
Alignment explanation
Indices: 8737767--8737801 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
8737757 CTCACATTTC
8737767 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
8737781 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
8737795 TATTTCT
1 T-TTTCT
8737802 GCTTCTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTCTTTTCTCCA
Found at i:8737785 original size:19 final size:18
Alignment explanation
Indices: 8737747--8737791 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
8737737 TACGGTACGC
8737747 TTCTTTTC-TTCTCACAT
1 TTCTTTTCTTTCTCACAT
8737764 TTCTTTTCTTTTCTC-CATT
1 TTCTTTTC-TTTCTCACA-T
8737783 TTCTTTTCT
1 TTCTTTTCT
8737792 CCATATTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.32
18 3 0.12
19 14 0.56
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.67
Consensus pattern (18 bp):
TTCTTTTCTTTCTCACAT
Found at i:8738478 original size:41 final size:41
Alignment explanation
Indices: 8738433--8738525 Score: 177
Period size: 41 Copynumber: 2.2 Consensus size: 41
8738423 TACATTGTGA
8738433 ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
1 ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
8738474 ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
1 ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
8738515 ATTTGTAGTAG
1 ATTTGT-GTAG
8738526 GTCGAAGTTG
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 47 0.92
42 4 0.08
ACGTcount: A:0.25, C:0.02, G:0.33, T:0.40
Consensus pattern (41 bp):
ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
Found at i:8738543 original size:20 final size:19
Alignment explanation
Indices: 8738520--8738579 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
8738510 TGAGTATTTG
8738520 TAGTAGGTCGA-AGTTGTAAT
1 TAGTAGGT-GACA-TTGTAAT
*
8738540 TAGTAGGTTACATTGTAAT
1 TAGTAGGTGACATTGTAAT
*
8738559 TAGTAGGTTACATTGTGAAT
1 TAGTAGGTGACATTGT-AAT
8738579 T
1 T
8738580 TGTGTAGTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
19 24 0.65
20 13 0.35
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (19 bp):
TAGTAGGTGACATTGTAAT
Found at i:8738557 original size:19 final size:19
Alignment explanation
Indices: 8738533--8738579 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 19
8738523 TAGGTCGAAG
8738533 TTGTAATTAGTAGGTTACA
1 TTGTAATTAGTAGGTTACA
8738552 TTGTAATTAGTAGGTTACA
1 TTGTAATTAGTAGGTTACA
8738571 TTGTGAATT
1 TTGT-AATT
8738580 TGTGTAGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (19 bp):
TTGTAATTAGTAGGTTACA
Found at i:8740252 original size:42 final size:41
Alignment explanation
Indices: 8740098--8740253 Score: 158
Period size: 42 Copynumber: 3.7 Consensus size: 41
8740088 TATGTTATCG
*
8740098 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GATTCA
* * * *
8740140 TGTATAAGACCATGTCTGGGACATCGGCATC-ATATTTGATTTCG
1 TG--TAAGACCACGTCTGGGACGTTGGCATCGATA-TTGA-TTCA
8740184 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATT-CA
8740226 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
8740254 TGTCCGATTT
Statistics
Matches: 94, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
41 3 0.03
42 53 0.56
43 8 0.09
44 28 0.30
45 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTCA
Found at i:8743820 original size:16 final size:17
Alignment explanation
Indices: 8743801--8743832 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8743791 TTATTAAATC
8743801 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
8743817 ATATATTTAATATTAA
1 ATATATTTAATATTAA
8743833 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:8743896 original size:66 final size:62
Alignment explanation
Indices: 8743825--8744036 Score: 197
Period size: 59 Copynumber: 3.4 Consensus size: 62
8743815 AAATATATTT
8743825 AATATTAATTATTTAAAATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTA-TTAAAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATAA
8743890 G
62 G
* * * * * * *
8743891 AATATTAATTATTAAAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
8743950 AATTATGTTATT-TT-ATATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
8744010 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAA-AATTTTATTAA
8744037 ATTATATATT
Statistics
Matches: 113, Mismatches: 21, Indels: 27
0.70 0.13 0.17
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 37 0.33
60 32 0.28
61 11 0.10
62 1 0.01
63 4 0.04
65 11 0.10
66 11 0.10
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (62 bp):
AATATTAATTATTAAAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Done.