Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 220 of 325
Found at i:68988609 original size:42 final size:42
Alignment explanation
Indices: 68988550--68988633 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
68988540 GTTTCAAACA
*
68988550 CTTTTGTATCAAGTACATACGTAAGGTAAGCATTGCAACCCT
1 CTTTTGTATCAAGTACATACGCAAGGTAAGCATTGCAACCCT
* *
68988592 CTTTTGTATCAAGTACATATGCAAGGTAAGGATTGCAACCCT
1 CTTTTGTATCAAGTACATACGCAAGGTAAGCATTGCAACCCT
68988634 TTCTTACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (42 bp):
CTTTTGTATCAAGTACATACGCAAGGTAAGCATTGCAACCCT
Found at i:68996728 original size:34 final size:34
Alignment explanation
Indices: 68996668--68996741 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
68996658 ATACTGTACT
*
68996668 ACACTGATACTGTTACCGTAATGGGCTAAGGCCC
1 ACACTGATACTGCTACCGTAATGGGCTAAGGCCC
* * *
68996702 ACACTGATATTGCTACTGATAA-GGGCTTAGGCCC
1 ACACTGATACTGCTACCG-TAATGGGCTAAGGCCC
*
68996736 AGACTG
1 ACACTG
68996742 TTTGCACTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 31 0.91
35 3 0.09
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (34 bp):
ACACTGATACTGCTACCGTAATGGGCTAAGGCCC
Found at i:69011228 original size:20 final size:21
Alignment explanation
Indices: 69011186--69011227 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
69011176 AAGGATTTCT
69011186 ACCAAAGTTTTTAAAATTAAA
1 ACCAAAGTTTTTAAAATTAAA
*
69011207 ACCAAAGTTTTTGAAATTAAA
1 ACCAAAGTTTTTAAAATTAAA
69011228 CTTATCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (21 bp):
ACCAAAGTTTTTAAAATTAAA
Found at i:69015082 original size:26 final size:26
Alignment explanation
Indices: 69015053--69015121 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
69015043 TATCCGAAGC
**
69015053 TCCTGATTAAAGGCTCTTTGTGAGTT
1 TCCTGATTAAAGGCTCTTTGTGAACT
* *
69015079 TCCTGATTAAAAGTTCTTTGTGAACT
1 TCCTGATTAAAGGCTCTTTGTGAACT
*
69015105 TCCTGATT-ATGGCTCTT
1 TCCTGATTAAAGGCTCTT
69015122 ATGAGCTTCT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
25 6 0.17
26 30 0.83
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.43
Consensus pattern (26 bp):
TCCTGATTAAAGGCTCTTTGTGAACT
Found at i:69018769 original size:19 final size:19
Alignment explanation
Indices: 69018745--69018782 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
69018735 TATTAAATTC
69018745 ACATAACCAAACCAATATG
1 ACATAACCAAACCAATATG
*
69018764 ACATAACTAAACCAATATG
1 ACATAACCAAACCAATATG
69018783 TTAATATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.53, C:0.24, G:0.05, T:0.18
Consensus pattern (19 bp):
ACATAACCAAACCAATATG
Found at i:69020715 original size:45 final size:44
Alignment explanation
Indices: 69020507--69020721 Score: 201
Period size: 45 Copynumber: 4.9 Consensus size: 44
69020497 ATATCATACA
* ** *
69020507 ATGCCAACGTCCCAGACGTGGTCTTACATGTTATCTCATATCA--
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATAT-ATG
* *
69020550 ATGCC-ACTGTCCTAGACAG-GGTCTTACAC-AAATCA-A-ATATA
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCACATATATG
* ** * * * *
69020591 ATGCCGATATCCCAGACATGGTCTTACACGTAACCACTTATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATAT-G
*
69020636 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCACATATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATA-TG
*
69020681 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATAT
69020722 TGAAATCCTA
Statistics
Matches: 138, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
39 1 0.01
40 2 0.01
41 23 0.17
42 10 0.07
43 22 0.16
44 5 0.04
45 74 0.54
46 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATATG
Found at i:69021098 original size:13 final size:14
Alignment explanation
Indices: 69021080--69021109 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
69021070 TATGAACACT
69021080 TATGTTTT-TATTA
1 TATGTTTTATATTA
69021093 TATGTTTTATATTA
1 TATGTTTTATATTA
69021107 TAT
1 TAT
69021110 TAACTTAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (14 bp):
TATGTTTTATATTA
Found at i:69023213 original size:12 final size:12
Alignment explanation
Indices: 69023196--69023222 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
69023186 TACTAATTCG
69023196 ATTCGATTAACC
1 ATTCGATTAACC
69023208 ATTCGATTAACC
1 ATTCGATTAACC
69023220 ATT
1 ATT
69023223 TAAACATCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.37
Consensus pattern (12 bp):
ATTCGATTAACC
Found at i:69024152 original size:10 final size:10
Alignment explanation
Indices: 69024131--69024163 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
69024121 TTTTAGTCCT
69024131 AATTAT-AAA
1 AATTATAAAA
69024140 AATTATAAAA
1 AATTATAAAA
69024150 AATT-TAAAA
1 AATTATAAAA
69024159 AATTA
1 AATTA
69024164 AAATATAGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 15 0.68
10 7 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AATTATAAAA
Found at i:69025362 original size:388 final size:388
Alignment explanation
Indices: 69024646--69026590 Score: 3845
Period size: 388 Copynumber: 5.0 Consensus size: 388
69024636 CAAATGATTC
69024646 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
1 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
69024711 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
66 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
69024776 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
131 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
69024841 GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGGCTA
196 GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGGCTA
69024906 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
261 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
69024971 TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
326 TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
69025034 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
1 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
69025099 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
66 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
69025164 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
131 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
69025229 GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGGCTA
196 GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGGCTA
69025294 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
261 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
69025359 TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
326 TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
69025422 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
1 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
69025487 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
66 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
69025552 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
131 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
*
69025617 GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGCCTA
196 GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGGCTA
69025682 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
261 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
69025747 TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
326 TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
69025810 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
1 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
69025875 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
66 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
69025940 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
131 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
69026005 GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGGCTA
196 GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGGCTA
69026070 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
261 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
69026135 TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
326 TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
69026198 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
1 AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
69026263 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
66 AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
*
69026328 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTCACAAT
131 AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
* *
69026393 GTGCTAGAAAAGTACCTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGCCTA
196 GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGGCTA
69026458 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
261 AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
*
69026523 TTTCAAATTTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
326 TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
69026586 AAATA
1 AAATA
69026591 TATCCTACAG
Statistics
Matches: 1551, Mismatches: 6, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
388 1551 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (388 bp):
AAATAATATGAGACTATTATGTTGTCTATAAGCTTAATGAGGGAGATAGTTTGTCTTAATTGTCG
AAGTAAGATTGACTCCCAAAAATAGAGATATAAATGTGATTGTTTAGACTAACAATACATTAAAT
AAGACTCAAGTTAAATTTACCTTAAATCCATTTAAGGATTTATGCACATGTAAAGTTGTTACAAT
GTGCTAGAAAAGTAACTAGCAATAGCAAACTAGACATGGAAACCTATTGGAGCACATGTTGGCTA
AAATCATTAAAACTAATCCTAAAATGAATTTAGAAAAAATCATTAAAACTAAATATTGGTCTTAT
TTTCAAAATTTGGATTTGAGAGTAATATTTCGTATAAAATTGTAGCATTCCTATATATCTAAA
Found at i:69027128 original size:76 final size:76
Alignment explanation
Indices: 69026965--69027129 Score: 242
Period size: 76 Copynumber: 2.2 Consensus size: 76
69026955 TAATCTAATT
*
69026965 TCTAAATTAACATCTAATGAAATCTATGAAAACTTAAAATCTAAATTCTACAACTTAAAAATGAA
1 TCTAAATTAAAATCTAATGAAATCTATGAAAACTTAAAATCTAAATTCTACAACTTAAAAATGAA
*
69027030 ACAAATCCAGC
66 ACAAATCCAAC
* * * * * *
69027041 TCTAAACTAAAATCTAATTAAATTTATTAAAACTTAAAATCTAAATTCTAGAGC-TAAAAATGAA
1 TCTAAATTAAAATCTAATGAAATCTATGAAAACTTAAAATCTAAATTCTACAACTTAAAAATGAA
69027105 ACAAATCCAAC
66 ACAAATCCAAC
69027116 TCTAAATTTAAAAT
1 TCTAAA-TTAAAAT
69027130 ATGAGAATTT
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
75 26 0.33
76 53 0.67
ACGTcount: A:0.51, C:0.15, G:0.04, T:0.30
Consensus pattern (76 bp):
TCTAAATTAAAATCTAATGAAATCTATGAAAACTTAAAATCTAAATTCTACAACTTAAAAATGAA
ACAAATCCAAC
Found at i:69034164 original size:42 final size:42
Alignment explanation
Indices: 69034115--69034222 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 42
69034105 ATGAGATCCT
* * *
69034115 GTATAAGACCATATCTGGGATATGGCATTGATATGAGATTTT
1 GTATAAGACCATATCTGGGATATGGCATTGAAATGAGACTTC
* ** * * * *
69034157 GTGTAAGACCACCTCTAGGACATAGCGTTGAAATGAGACTTC
1 GTATAAGACCATATCTGGGATATGGCATTGAAATGAGACTTC
69034199 GTATAAGACCATATCTGGGATATG
1 GTATAAGACCATATCTGGGATATG
69034223 CCTTCGATGT
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
GTATAAGACCATATCTGGGATATGGCATTGAAATGAGACTTC
Found at i:69041293 original size:28 final size:28
Alignment explanation
Indices: 69041253--69041331 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
69041243 GCAATCAAAT
* * *
69041253 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
69041281 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
69041309 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
69041332 CAAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:69044710 original size:14 final size:13
Alignment explanation
Indices: 69044684--69044730 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
69044674 TTTGTTTCAT
69044684 TTTTATTTATAT-
1 TTTTATTTATATA
*
69044696 TTATATTTATATA
1 TTTTATTTATATA
* *
69044709 TTTTTATTTGTTTA
1 -TTTTATTTATATA
69044723 TTTTATTT
1 TTTTATTT
69044731 TATTAATCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 11 0.38
13 8 0.28
14 10 0.34
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (13 bp):
TTTTATTTATATA
Found at i:69045879 original size:26 final size:26
Alignment explanation
Indices: 69045838--69045888 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
69045828 ATGCGACAAA
69045838 TAAAAATTGAGAAAAAAGT-CAAAAG
1 TAAAAATTGAGAAAAAAGTACAAAAG
69045863 TAAAAA-TGAGAAGAAAAAGTACAAAA
1 TAAAAATTGAG-A-AAAAAGTACAAAA
69045889 TAGAAACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.17
25 7 0.30
26 7 0.30
27 5 0.22
ACGTcount: A:0.67, C:0.04, G:0.16, T:0.14
Consensus pattern (26 bp):
TAAAAATTGAGAAAAAAGTACAAAAG
Found at i:69045899 original size:19 final size:20
Alignment explanation
Indices: 69045857--69045900 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
69045847 AGAAAAAAGT
69045857 CAAAAGTAAAAATGAGAAGA
1 CAAAAGTAAAAATGAGAAGA
69045877 -AAAAGTACAAAAT-AGAA-A
1 CAAAAGTA-AAAATGAGAAGA
69045895 CAAAAG
1 CAAAAG
69045901 AACTATGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.05
19 16 0.73
20 5 0.23
ACGTcount: A:0.68, C:0.07, G:0.16, T:0.09
Consensus pattern (20 bp):
CAAAAGTAAAAATGAGAAGA
Found at i:69045899 original size:20 final size:19
Alignment explanation
Indices: 69045858--69045899 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
69045848 GAAAAAAGTC
*
69045858 AAAAGTAAAAATGAGAAGA
1 AAAAGTAAAAATGAGAACA
69045877 AAAAGTACAAAAT-AGAAACA
1 AAAAGTA-AAAATGAG-AACA
69045897 AAA
1 AAA
69045900 GAACTATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.71, C:0.05, G:0.14, T:0.10
Consensus pattern (19 bp):
AAAAGTAAAAATGAGAACA
Found at i:69055966 original size:44 final size:44
Alignment explanation
Indices: 69055889--69055973 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
69055879 CATGTATTGC
* * * *
69055889 ATCCATTATGAACTCGGACCACCTCAGCAAGCTCGGATGCTCGT
1 ATCCATAATGAACTCGGACCAACTCAACAAGCTCAGATGCTCGT
* *
69055933 ATCCATAATGAACTCGGACCAACTTAACGAGCTCAGATGCT
1 ATCCATAATGAACTCGGACCAACTCAACAAGCTCAGATGCT
69055974 TCACATATAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (44 bp):
ATCCATAATGAACTCGGACCAACTCAACAAGCTCAGATGCTCGT
Found at i:69056014 original size:45 final size:45
Alignment explanation
Indices: 69055943--69056056 Score: 124
Period size: 45 Copynumber: 2.5 Consensus size: 45
69055933 ATCCATAATG
* *
69055943 AACTCGGACCAACTTAACGAGCTCAGATGCT-TCACATATA-CTACA
1 AACTCGGACCAACTCAACAAGCTCAGAT-CTCTCACATATATC-ACA
* * * * *
69055988 AACTTGGGCCAACTCAACAAGTTCAGATTTCTCACATATATCACG
1 AACTCGGACCAACTCAACAAGCTCAGATCTCTCACATATATCACA
*
69056033 AACTCGGACCAACTCAACGAGCTC
1 AACTCGGACCAACTCAACAAGCTC
69056057 GGAATTCTTA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
44 1 0.02
45 54 0.96
46 1 0.02
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.22
Consensus pattern (45 bp):
AACTCGGACCAACTCAACAAGCTCAGATCTCTCACATATATCACA
Found at i:69056282 original size:14 final size:16
Alignment explanation
Indices: 69056250--69056288 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
69056240 ATTTACATAA
*
69056250 CATATATCACATATTT
1 CATATATCACATATGT
69056266 CATATATCAC-T-TGT
1 CATATATCACATATGT
69056280 CATATATCA
1 CATATATCA
69056289 TAATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:69056327 original size:20 final size:20
Alignment explanation
Indices: 69056289--69056327 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
69056279 TCATATATCA
* *
69056289 TAATTTTCTTGCATTTCATG
1 TAATATTCTTGCATGTCATG
*
69056309 TAATATTCTTTCATGTCAT
1 TAATATTCTTGCATGTCAT
69056328 ATTTCCACAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (20 bp):
TAATATTCTTGCATGTCATG
Found at i:69062080 original size:41 final size:40
Alignment explanation
Indices: 69061988--69062095 Score: 155
Period size: 40 Copynumber: 2.6 Consensus size: 40
69061978 TTGACAAAAA
*
69061988 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAAATAGC
* *
69062028 TTCAGCTATGTATGGCATTTAGTGTGCAAGATT-AAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGC--GATTCAAAATAGC
69062069 TTCGGCTATGTATTGGCACTTAGTGTG
1 TTCGGCTATGTA-TGGCACTTAGTGTG
69062096 TGAGAATTCG
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
40 25 0.42
41 18 0.30
42 17 0.28
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAAATAGC
Found at i:69076067 original size:79 final size:81
Alignment explanation
Indices: 69075962--69076140 Score: 217
Period size: 79 Copynumber: 2.2 Consensus size: 81
69075952 CGTTCAAATA
* * * *
69075962 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAAC-CCGGATT
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-AGATCTT-ACTCCGGATA
* * *
69076024 TAGTGAC-TCGCACCAATG
64 TAGTCACTTAGCA-CAAAG
*
69076042 CCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGTACAAATGCCTTCAGATCTTACTCCGGATATA
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCAGATCTTACTCCGGATATA
69076105 GTCACTTAGCACAAAG
66 GTCACTTAGCACAAAG
69076121 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
69076141 CATCATTCGA
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
78 4 0.05
79 58 0.67
80 24 0.28
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCAGATCTTACTCCGGATATA
GTCACTTAGCACAAAG
Found at i:69076140 original size:40 final size:40
Alignment explanation
Indices: 69075937--69076140 Score: 204
Period size: 40 Copynumber: 5.1 Consensus size: 40
69075927 TGGAATTTAA
** * *
69075937 CCGGATATAGCT-ACTCGTTCAAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69075977 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69076017 CCGGATTTAGTGACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69076056 CCGGA-ATTAGTAACTCGTACAAATGCCTTC-AGATCTTA-C
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
69076095 TCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 -CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69076136 CCGGA
1 CCGGA
69076141 CATCATTCGA
Statistics
Matches: 135, Mismatches: 20, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 91 0.67
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69077847 original size:104 final size:105
Alignment explanation
Indices: 69077601--69077868 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
69077591 TTGTATATAA
** *
69077601 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
69077665 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
69077706 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
69077771 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
69077810 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
69077869 ATAACGGTTA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 85 0.55
105 68 0.44
106 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:69085194 original size:26 final size:26
Alignment explanation
Indices: 69085159--69085209 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
69085149 AATGTGAAAG
*
69085159 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
69085185 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
69085210 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:69085343 original size:104 final size:103
Alignment explanation
Indices: 69085081--69085346 Score: 451
Period size: 103 Copynumber: 2.6 Consensus size: 103
69085071 TTGTATATAA
** * *
69085081 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
69085146 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
69085184 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
69085249 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
**
69085288 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCA
69085347 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
103 92 0.61
104 60 0.39
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:69089698 original size:43 final size:42
Alignment explanation
Indices: 69089645--69089725 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
69089635 TGAATAATAT
**
69089645 TATCGGGCTTCGGGCCTAGCAGGCTAAAATGCCAGTGAAATGA
1 TATCGGGCTTCAAGCCTAGCAGGC-AAAATGCCAGTGAAATGA
* *
69089688 TATCGGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAA
1 TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCAGTGAA
69089726 TGAGTTCAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 12 0.35
43 22 0.65
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.20
Consensus pattern (42 bp):
TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCAGTGAAATGA
Found at i:69099100 original size:49 final size:49
Alignment explanation
Indices: 69099022--69099267 Score: 276
Period size: 49 Copynumber: 5.0 Consensus size: 49
69099012 GTAGCCGAAG
* *
69099022 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * * **
69099071 TTATCCGGTACACGTAGTAGTCTGCACTTAGTACTACACACATGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * * *
69099121 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * *
69099171 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * *
69099221 CAATCTGGTACACATAGTAGCTTGCACTTAGTACTATACACGTGACC
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
69099268 TCACAATAGC
Statistics
Matches: 162, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 78 0.48
50 46 0.28
51 38 0.23
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:69099946 original size:30 final size:30
Alignment explanation
Indices: 69099912--69099971 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69099902 CTTTAATACG
69099912 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
69099942 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
69099972 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:69103121 original size:49 final size:49
Alignment explanation
Indices: 69103048--69103170 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 49
69103038 AGATGTCGAA
* *
69103048 GCCATGTCCCAGGCATGGTCTTACACTAGCTTTCATATAGCGAG-GCT-GAT
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATATAGCG-GTG-TAGAT
* * * *
69103098 GCCATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTAGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAGCGGTGTAGAT
69103147 GCCATGTCCCAGACAGGTCTTACA
1 GCCATGTCCCAGACAGGTCTTACA
69103171 TTGACACACC
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
48 2 0.03
49 49 0.77
50 13 0.20
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.28
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAGCGGTGTAGAT
Found at i:69103304 original size:46 final size:46
Alignment explanation
Indices: 69103242--69103359 Score: 159
Period size: 46 Copynumber: 2.6 Consensus size: 46
69103232 AGGACGATTT
69103242 ATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCAAT-GCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATGCT--ATGGCCGATGC
* * * * *
69103288 ATGTCCGACACATGTCTTACACTGGCTCTCATGCTGTGGCTGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCCGATGC
69103334 ATGTCCCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
69103360 ACACATATCA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 1 0.02
46 59 0.95
47 2 0.03
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.29
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCCGATGC
Found at i:69116041 original size:12 final size:11
Alignment explanation
Indices: 69116011--69116070 Score: 57
Period size: 12 Copynumber: 5.0 Consensus size: 11
69116001 TATTAAATGG
69116011 AAATAAAAAGTA
1 AAATAAAAA-TA
**
69116023 ATTTAAAAATA
1 AAATAAAAATA
69116034 TAAATAAAAATA
1 -AAATAAAAATA
69116046 AAATAAAAAATAA
1 AAAT-AAAAAT-A
69116059 AAATAAATAATA
1 AAATAAA-AATA
69116071 GGTGTTTATA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 6 0.15
12 26 0.65
13 8 0.20
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:69116042 original size:11 final size:10
Alignment explanation
Indices: 69116028--69116068 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
69116018 AAGTAATTTA
69116028 AAAATATAAAT
1 AAAA-ATAAAT
69116039 AAAAATAAA-
1 AAAAATAAAT
*
69116048 ATAAA-AAAT
1 AAAAATAAAT
69116057 AAAAATAAAT
1 AAAAATAAAT
69116067 AA
1 AA
69116069 TAGGTGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
8 3 0.12
9 8 0.31
10 11 0.42
11 4 0.15
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:69116044 original size:6 final size:6
Alignment explanation
Indices: 69116026--69116070 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
69116016 AAAAGTAATT
*
69116026 TAAAAA TATAAA TAAAAA T-AAAA TAAAAAA TAAAAA TAAATAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA T-AAAAA TAAAAA TAAA-AA TA
69116071 GGTGTTTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
5 5 0.15
6 20 0.59
7 9 0.26
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (6 bp):
TAAAAA
Found at i:69121523 original size:42 final size:42
Alignment explanation
Indices: 69121464--69121555 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
69121454 TGGCCCTTAG
* ** *
69121464 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
69121506 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
69121548 GCCCATTT
1 GCCCATTT
69121556 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:69121744 original size:26 final size:26
Alignment explanation
Indices: 69121700--69121821 Score: 151
Period size: 26 Copynumber: 4.8 Consensus size: 26
69121690 CCTCTTTAAT
69121700 AACT-GGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
69121724 AACTGGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
69121750 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* * * **
69121776 AA-TTGGGAATAAGACCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
69121801 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
69121822 GCACTTCCTC
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
24 4 0.05
25 25 0.31
26 52 0.64
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:69121796 original size:51 final size:52
Alignment explanation
Indices: 69121700--69121821 Score: 189
Period size: 51 Copynumber: 2.4 Consensus size: 52
69121690 CCTCTTTAAT
*
69121700 AACT-GGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGAATAAGCCATTTTCGGTA
*
69121750 AACTGGGGCATAAGCCCTTTTCAATAAA-TTGGGAATAAGACC-TTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGAATAAG-CCATTTTCGGTA
69121801 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
69121822 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
50 4 0.06
51 44 0.66
52 19 0.28
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGAATAAGCCATTTTCGGTA
Found at i:69122295 original size:20 final size:22
Alignment explanation
Indices: 69122270--69122311 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
69122260 TAAGTTCGAA
69122270 AGCCCATTG-GGCCCAA-TTTC
1 AGCCCATTGAGGCCCAACTTTC
69122290 AGCCCATTGAGGCCCAACTTTC
1 AGCCCATTGAGGCCCAACTTTC
69122312 CATCGTGCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
21 7 0.35
22 4 0.20
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (22 bp):
AGCCCATTGAGGCCCAACTTTC
Found at i:69122659 original size:27 final size:26
Alignment explanation
Indices: 69122624--69122717 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
69122614 GGGCATATTC
*
69122624 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
*
69122651 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
69122678 GTCACTTTACGCTACAGGGGCTTTACG
1 GTCACTTTAC-CTACAGGGGCTTTACG
**
69122705 GTCTTTTTACCTA
1 GTCACTTTACCTA
69122718 ATAGGGGTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.07
27 52 0.88
28 3 0.05
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:69122799 original size:27 final size:27
Alignment explanation
Indices: 69122754--69123091 Score: 259
Period size: 27 Copynumber: 12.5 Consensus size: 27
69122744 TAAAATAGTG
* *
69122754 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
** ** *
69122781 TTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
*** * *
69122808 TTTCCATAATTTTTAGAAAGTCAAGGGTA
1 TTTTGGTAA-TTTTACAAA-CCAAGGGTA
* ** * *
69122837 TTTCT-GTAACTTTGTAAATCAGGGGTA
1 TTT-TGGTAATTTTACAAACCAAGGGTA
**
69122864 TTTTGGTAATTTTACAAATTAAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
* *
69122891 TTTCGGTAATTTCACAAACC-AGTGGTA
1 TTTTGGTAATTTTACAAACCAAG-GGTA
* *
69122918 TTTTGGTAATTTTACAAACTAGGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
***
69122945 TTTTGGTAATTTTACAAATTGAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
*
69122972 TTTCGGTAATTTTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
* * *
69122999 TTTTAGCAATTTTACAAA-CTAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
**** *
69123025 TTTTGGTAATTTTACTGGTCGAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
** * *
69123052 TTTTGGTAATTTTGTAAACCGATGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
*
69123079 TTTTAGTAATTTT
1 TTTTGGTAATTTT
69123092 GTAAATCGAG
Statistics
Matches: 247, Mismatches: 57, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
26 23 0.09
27 197 0.80
28 14 0.06
29 13 0.05
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAACCAAGGGTA
Found at i:69122952 original size:81 final size:81
Alignment explanation
Indices: 69122857--69123039 Score: 307
Period size: 81 Copynumber: 2.3 Consensus size: 81
69122847 TTTGTAAATC
69122857 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAAG-GGTATTT
* *
69122921 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
* *
69122938 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
69123003 AGCAATTTTACAAACT
66 AGCAATTTTACAAACT
69123019 A-GGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTGGTAATTTTAC
69123040 TGGTCGAGGG
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
80 20 0.21
81 75 0.77
82 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:69123113 original size:27 final size:27
Alignment explanation
Indices: 69123083--69123210 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
69123073 ATGGTATTTT
* *
69123083 AGTAATTTTGTAAATCGAGAGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
69123110 AGTAATTCTGTGAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
69123137 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
69123164 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
69123191 GGTAATTTTGTAAATCGAGG
1 AGTAATTCTGTAAATCGAGG
69123211 TTACCTTGGT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:69130938 original size:13 final size:13
Alignment explanation
Indices: 69130920--69130944 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69130910 CCGGGCACAT
69130920 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
69130933 GCCCGTGTCCTT
1 GCCCGTGTCCTT
69130945 TACACGGCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:69134434 original size:47 final size:47
Alignment explanation
Indices: 69134365--69134529 Score: 233
Period size: 47 Copynumber: 3.5 Consensus size: 47
69134355 GTGTGTATAC
*
69134365 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
69134412 GTGAAAGTGTATTTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * *
69134459 GTGAAAGTGTATATATGTGACAGGGCCGAGTGG-CGAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG-ATGTGATGAAT
*
69134506 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
69134530 TCCCGAAGGG
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 2 0.02
47 103 0.98
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:69139759 original size:55 final size:54
Alignment explanation
Indices: 69139637--69139762 Score: 135
Period size: 55 Copynumber: 2.3 Consensus size: 54
69139627 TGCGACATGG
* * * *
69139637 CCATGGGCGAACCTGCCAAAACAACACAAGCGTTCGACACGCTCGTGTCTAGAAC
1 CCAT-GGCGAACCTGTCAAAACAACACAAGCGTTCGACACGCCCGTGCCAAGAAC
* * * ** *
69139692 TCGTGGCTGAACCTGTCAAATCAACACGGGCGTTCGACACGCCCGTGCCAAGCAC
1 CCATGGC-GAACCTGTCAAAACAACACAAGCGTTCGACACGCCCGTGCCAAGAAC
69139747 CCATGGTCGAACCTGT
1 CCATGG-CGAACCTGT
69139763 TAAACTAATA
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
54 3 0.05
55 53 0.93
56 1 0.02
ACGTcount: A:0.26, C:0.33, G:0.24, T:0.17
Consensus pattern (54 bp):
CCATGGCGAACCTGTCAAAACAACACAAGCGTTCGACACGCCCGTGCCAAGAAC
Found at i:69144806 original size:31 final size:31
Alignment explanation
Indices: 69144771--69144833 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
69144761 AGTTAGTTTC
69144771 AAGAACGATTAATTATAAATATTTAAAACTT
1 AAGAACGATTAATTATAAATATTTAAAACTT
69144802 AAGAACGATTAATTATAAATATTTAAAACTT
1 AAGAACGATTAATTATAAATATTTAAAACTT
69144833 A
1 A
69144834 CCTGTCACGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (31 bp):
AAGAACGATTAATTATAAATATTTAAAACTT
Found at i:69152962 original size:38 final size:38
Alignment explanation
Indices: 69152911--69152984 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
69152901 GATTCATTAG
69152911 CGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAA
1 CGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAA
* *
69152949 CGTGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 CGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
69152985 TAATTTGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (38 bp):
CGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAA
Found at i:69168904 original size:48 final size:48
Alignment explanation
Indices: 69168835--69169197 Score: 496
Period size: 48 Copynumber: 7.6 Consensus size: 48
69168825 TAAAGTACCA
* * * * ** *
69168835 ATGCCATGTCCCCGACATGGTCTTACA-AGACTCCACATATCATCATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC-ACACATATCATCGCCG
*
69168883 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCCCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * **
69168931 ATGCTATGTCCTAGACATGGTCTTACACTGGCACACATATCATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * * *
69168979 ATGTCATGCCCCAGACATGGTCTTACACTAGCACACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
69169027 ATGGCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
*
69169075 ATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
69169123 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
69169171 ATGCCA-ATCCCAGACATGTTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
69169198 ATGCACATTT
Statistics
Matches: 285, Mismatches: 29, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
47 19 0.07
48 264 0.93
49 2 0.01
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
Found at i:69173124 original size:40 final size:40
Alignment explanation
Indices: 69173069--69173292 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
69173059 TATTCGGATG
*
69173069 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
69173109 ATATCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
69173152 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
69173192 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
69173232 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
69173272 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
69173293 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 112 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:69173212 original size:83 final size:80
Alignment explanation
Indices: 69173073--69173291 Score: 282
Period size: 83 Copynumber: 2.7 Consensus size: 80
69173063 CGGATGATAT
* * **
69173073 CCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAAGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAAGCATTCA
69173138 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
69173156 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAAGCATTCA
*
69173221 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
69173236 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAA
69173292 GATACTTGGG
Statistics
Matches: 124, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
79 15 0.12
80 45 0.36
81 2 0.02
83 62 0.50
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAAGCATTCA
TGCTAGTGACTATAC
Found at i:69187336 original size:38 final size:38
Alignment explanation
Indices: 69187293--69187368 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
69187283 TATATTTTTT
69187293 TTAAATTTTCCAAAGTATTGTTTAATCGATTTTAGATG
1 TTAAATTTTCCAAAGTATTGTTTAATCGATTTTAGATG
*
69187331 TTAAATTTTCCAGAGTATTGTTTAATCGATTTTAGATG
1 TTAAATTTTCCAAAGTATTGTTTAATCGATTTTAGATG
69187369 AAACTAACCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.47
Consensus pattern (38 bp):
TTAAATTTTCCAAAGTATTGTTTAATCGATTTTAGATG
Found at i:69213098 original size:22 final size:21
Alignment explanation
Indices: 69213056--69213126 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 21
69213046 TGTTTTAGTA
69213056 TTATTTTTATTTGTCTT-AATAT
1 TTATTTTTATTT-T-TTAAATAT
69213078 TTATTTTTATGTTTTTAAATATAT
1 TTATTTTTAT-TTTTT-AA-ATAT
69213102 TTGATTTATTATATTTTTAAA-AT
1 TT-ATTT-TTAT-TTTTTAAATAT
69213125 TT
1 TT
69213127 TTTATTTAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
21 2 0.05
22 11 0.26
23 7 0.17
24 7 0.17
25 6 0.14
26 9 0.21
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (21 bp):
TTATTTTTATTTTTTAAATAT
Found at i:69213120 original size:26 final size:24
Alignment explanation
Indices: 69213074--69213122 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
69213064 ATTTGTCTTA
*
69213074 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
69213098 ATATTTGATTTATTATATTTTTAAA
1 ATATTT-ATTT-TTATATTTTTAAA
69213123 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:69213133 original size:25 final size:26
Alignment explanation
Indices: 69213077--69213134 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
69213067 TGTCTTAATA
*
69213077 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATATTTTTAAATATAT
* *
69213102 TTGATTTATTATATTTTTAAA-ATTT
1 TTTATTTATTATATTTTTAAATATAT
69213127 TTTATTTA
1 TTTATTTA
69213135 ATGAAATAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTATTTATTATATTTTTAAATATAT
Found at i:69213869 original size:17 final size:18
Alignment explanation
Indices: 69213847--69213881 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
69213837 AGTGATATTT
69213847 GAATTGAATGA-GAATTG
1 GAATTGAATGATGAATTG
*
69213864 GAATTGATTGATGAATTG
1 GAATTGAATGATGAATTG
69213882 TATAATGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (18 bp):
GAATTGAATGATGAATTG
Found at i:69218109 original size:29 final size:30
Alignment explanation
Indices: 69218081--69218136 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
69218071 ACAATTTGCA
*
69218081 ATATTATACCTC-AACTTT-ATTTTGGTGC
1 ATATTATACATCAAACTTTAATTTTGGTGC
*
69218109 ATTTTATACATCAAACTTTAATTTTGGT
1 ATATTATACATCAAACTTTAATTTTGGT
69218137 TGAACTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.42
29 6 0.25
30 8 0.33
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.48
Consensus pattern (30 bp):
ATATTATACATCAAACTTTAATTTTGGTGC
Found at i:69219668 original size:17 final size:17
Alignment explanation
Indices: 69219646--69219687 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
69219636 AATTAATTTT
69219646 ATTTTTATAAAATAACC
1 ATTTTTATAAAATAACC
69219663 ATTTTTATAAAATAACC
1 ATTTTTATAAAATAACC
*
69219680 ATTCTTAT
1 ATTTTTAT
69219688 TTAATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTTTTATAAAATAACC
Found at i:69231335 original size:93 final size:93
Alignment explanation
Indices: 69231176--69231346 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
69231166 GGATGGTTGA
* *
69231176 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
69231241 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
69231269 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
69231334 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
69231347 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69231349 original size:46 final size:46
Alignment explanation
Indices: 69231180--69231351 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
69231170 GGTTGAGCAT
* * *
69231180 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
69231226 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
69231271 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
69231319 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69231352 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 60 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:69233121 original size:47 final size:47
Alignment explanation
Indices: 69233048--69233215 Score: 320
Period size: 47 Copynumber: 3.6 Consensus size: 47
69233038 GGTATAATGC
69233048 CGAT-CCATGTCCCAGACATGGTCTTACTCTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCATCCATCAAGT
69233094 CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCATCCATCAAGT
69233141 CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCATCCATCAAGT
*
69233188 CGATGCCATGTCCCAAACATGGTCTTAC
1 CGATGCCATGTCCCAGACATGGTCTTAC
69233216 ATTGACTATT
Statistics
Matches: 120, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
46 4 0.03
47 116 0.97
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCATCCATCAAGT
Found at i:69233318 original size:48 final size:48
Alignment explanation
Indices: 69233256--69233479 Score: 259
Period size: 48 Copynumber: 4.8 Consensus size: 48
69233246 TCACATATCT
* *
69233256 GTGCTGATGCCATGTCCCCGACATGGTCTTACACTGACACCTCTATAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATAC
69233304 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATAC
* *
69233352 GTGCCGATGCCATGTCCCAGACATGGTCTTACATTGACACATC--TA-
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATAC
* * *
69233397 GTAGCCGATG-CATGTCCTAAACAT-GTCTTACACT-AGCTCTCGTCTCA-A-
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-C-TCT-ATAC
* *
69233445 -TGTCGATGCCATGTCCCAAACATGGTCTTACACTG
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTG
69233480 GCTCTCATAA
Statistics
Matches: 155, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
43 1 0.01
44 11 0.07
45 14 0.09
46 17 0.11
47 14 0.09
48 98 0.63
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATAC
Found at i:69233505 original size:47 final size:45
Alignment explanation
Indices: 69233404--69233527 Score: 135
Period size: 47 Copynumber: 2.7 Consensus size: 45
69233394 CTAGTAGCCG
* *
69233404 ATGCATGTCCTAAACATGTCTTACACTAGCTCTCGTCTCAATGTCG
1 ATGCATGTCCTAAACATGTCTTACACTAGCTCTCG-ATCAATGTCA
* *
69233450 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTC-AT-AATGTGGCTA
1 ATG-CATGTCCTAAACAT-GTCTTACACTAGCTCTCGATCAATGT--C-A
*
69233498 ATGCATGTCCTAGACATGTCTTACACTAGC
1 ATGCATGTCCTAAACATGTCTTACACTAGC
69233528 ACACAAATAA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 5 0.08
46 16 0.24
47 26 0.39
48 19 0.29
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (45 bp):
ATGCATGTCCTAAACATGTCTTACACTAGCTCTCGATCAATGTCA
Found at i:69233526 original size:94 final size:92
Alignment explanation
Indices: 69233261--69233527 Score: 240
Period size: 92 Copynumber: 2.8 Consensus size: 92
69233251 TATCTGTGCT
** * * * *
69233261 GATGCCATGTCCCCGACATGGTCTTACACTGACACCTCTA-TACGTGCCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAAACATGGTCTTACACTGACACATCTAGTA---GCCAATG-CATGTCCTAAA
* *
69233325 CATGGTCTTACACT-GACAC-C-TCT-ATACGTGCC
62 CAT-GTCTTACACTAG-CTCTCGTCTCA-A--TGTC
* * *
69233357 GATGCCATGTCCCAGACATGGTCTTACATTGACACATCTAGTAGCCGATGCATGTCCTAAACATG
1 GATGCCATGTCCCAAACATGGTCTTACACTGACACATCTAGTAGCCAATGCATGTCCTAAACATG
69233422 TCTTACACTAGCTCTCGTCTCAATGTC
66 TCTTACACTAGCTCTCGTCTCAATGTC
* * * * *
69233449 GATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCATAATGTGGCTAATGCATGTCCTAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGACACATC-T-A-GTAGCCAATGCATGTCCTAAAC
69233513 ATGTCTTACACTAGC
63 ATGTCTTACACTAGC
69233528 ACACAAATAA
Statistics
Matches: 148, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
91 2 0.01
92 47 0.32
93 15 0.10
94 44 0.30
95 1 0.01
96 37 0.25
97 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (92 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGACACATCTAGTAGCCAATGCATGTCCTAAACATG
TCTTACACTAGCTCTCGTCTCAATGTC
Found at i:69240604 original size:47 final size:47
Alignment explanation
Indices: 69240550--69240867 Score: 193
Period size: 48 Copynumber: 6.7 Consensus size: 47
69240540 GGTATAATGC
* * *
69240550 CGATGCCATGTTCCAAACATGGTCTTACTCTGGCTTATC-CATCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGG-TTATCAAATCAAGT
* *
69240597 CGATGCCATGTCCCAAACATGGTCTTACACTGGTTATCGAAATGAGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGTTATC-AAATCAAGT
* * * *
69240645 CGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATC-AGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGTTATCA-A-ATCAAGT
* * ** ** *
69240693 GCCAATGCCATGTCCCAGACATGGTCTTACACT-GACATCTCTAT-ACGT
1 --CGATGCCATGTCCCAAACATGGTCTTACACTGGTTATC-AAATCAAGT
* * ** ** * *
69240741 GCCGATGCCATGTCCTAGACATGGTCTTACACT-GACA-CATCTCGTAGC
1 --CGATGCCATGTCCCAAACATGGTCTTACACTGGTTATCAAATC-AAGT
* * *** *
69240789 CGATG-CATGTCCCAAACAT-GTCTTACACTAGTTCTCGTCTCAATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGTTATCAAATCAA-GT
* *
69240835 CGATGCCATGTCCTAGACATGGTCTTACACTGG
1 CGATGCCATGTCCCAAACATGGTCTTACACTGG
69240868 CTCTCATAAT
Statistics
Matches: 219, Mismatches: 37, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
44 10 0.05
45 14 0.06
46 24 0.11
47 45 0.21
48 93 0.42
49 5 0.02
50 28 0.13
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGTTATCAAATCAAGT
Found at i:69240751 original size:98 final size:97
Alignment explanation
Indices: 69240547--69240869 Score: 269
Period size: 98 Copynumber: 3.4 Consensus size: 97
69240537 TAGGGTATAA
* * *
69240547 TGCCGATGCCATGTTCCAAACATGGTCTTACTCTGGCTT-ATC-CATCAAGT--CGATGCCATGT
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTCA-CATATC-AGTGCCGATGCCATGT
** ***
69240608 CCCAAACATGGTCTTACACTGGTTATCGAAATGA-G
64 CCCAAACATGGTCTTACACT-GACATCTCTAT-ACG
* * * *
69240643 -GTCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCAGTGCCAATGCCATGTC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCACATATCAGTGCCGATGCCATGTC
*
69240707 CCAGACATGGTCTTACACTGACATCTCTATACG
65 CCAAACATGGTCTTACACTGACATCTCTATACG
* * * *
69240740 TGCCGATGCCATGTCCTAGACATGGTCTTACACT-G--ACACATCTC-GTAGCCGATG-CATGTC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTCACATATCAGT-GCCGATGCCATGTC
** * *
69240800 CCAAACAT-GTCTTACACT-AGTTCTCGTCT-CAA
65 CCAAACATGGTCTTACACTGACATCTC-TATAC-G
* *
69240832 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCT
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT
69240870 CTCATAATGT
Statistics
Matches: 189, Mismatches: 25, Indels: 27
0.78 0.10 0.11
Matches are distributed among these distances:
91 6 0.03
92 46 0.24
93 16 0.08
94 13 0.07
95 32 0.17
96 6 0.03
97 12 0.06
98 58 0.31
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (97 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTCACATATCAGTGCCGATGCCATGTCC
CAAACATGGTCTTACACTGACATCTCTATACG
Found at i:69247656 original size:53 final size:53
Alignment explanation
Indices: 69247593--69247698 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
69247583 ATCCTAAGTA
69247593 TGCAAACTATATGAATGAAATATATTTTAGCAAAATGAAACACAATTTGCAAC
1 TGCAAACTATATGAATGAAATATATTTTAGCAAAATGAAACACAATTTGCAAC
* *
69247646 TGCAAACTATATGAATGAAATATATTTTAGTAAAATTAAACACAATTTGCAAC
1 TGCAAACTATATGAATGAAATATATTTTAGCAAAATGAAACACAATTTGCAAC
69247699 AATTATAACA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (53 bp):
TGCAAACTATATGAATGAAATATATTTTAGCAAAATGAAACACAATTTGCAAC
Found at i:69250538 original size:15 final size:16
Alignment explanation
Indices: 69250518--69250547 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
69250508 TTAGAATTTA
69250518 TATTAAAAT-TAAATT
1 TATTAAAATATAAATT
69250533 TATTAAAATATAAAT
1 TATTAAAATATAAAT
69250548 ATGACTCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTAAAATATAAATT
Found at i:69250865 original size:18 final size:18
Alignment explanation
Indices: 69250830--69250866 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
69250820 TGAGTTTTTA
*
69250830 AATTCGAATAACTCGAAT
1 AATTCGAATAAATCGAAT
*
69250848 AATTCGAATAAATTGAAT
1 AATTCGAATAAATCGAAT
69250866 A
1 A
69250867 TCAATCTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30
Consensus pattern (18 bp):
AATTCGAATAAATCGAAT
Found at i:69251375 original size:17 final size:17
Alignment explanation
Indices: 69251355--69251437 Score: 55
Period size: 17 Copynumber: 4.8 Consensus size: 17
69251345 ATTTATATCT
69251355 ATTATTTATATTATTAA
1 ATTATTTATATTATTAA
* *
69251372 ATTAAATTTCACATT-TTAT
1 ATT--ATTT-ATATTATTAA
* *
69251391 ATTATTTATATAATTGA
1 ATTATTTATATTATTAA
*
69251408 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTAA
69251426 A-TATTTATATTA
1 ATTATTTATATTA
69251438 AAATTGAATT
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
15 1 0.02
16 6 0.12
17 23 0.44
18 7 0.13
19 11 0.21
20 4 0.08
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (17 bp):
ATTATTTATATTATTAA
Found at i:69251426 original size:18 final size:17
Alignment explanation
Indices: 69251391--69251450 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
69251381 CACATTTTAT
69251391 ATTATTTATATAATTGA
1 ATTATTTATATAATTGA
69251408 ATTATTTAGTCAT-ATTGA
1 ATTATTTA-T-ATAATTGA
69251426 A-TATTTATATTAAAATTGA
1 ATTATTTATA-T--AATTGA
69251445 ATTATT
1 ATTATT
69251451 AATGATGCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 1 0.03
16 2 0.06
17 14 0.39
18 7 0.19
19 8 0.22
20 4 0.11
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.52
Consensus pattern (17 bp):
ATTATTTATATAATTGA
Found at i:69255199 original size:41 final size:41
Alignment explanation
Indices: 69255028--69255187 Score: 159
Period size: 41 Copynumber: 3.9 Consensus size: 41
69255018 GGGTCTAAAT
69255028 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * ** * *
69255069 CCGAACTTAGTTTCGAAGGGCTTTAAAGCTAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
69255109 CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
69255150 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
69255188 GAATCGGGCT
Statistics
Matches: 96, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
39 5 0.05
40 31 0.32
41 55 0.57
42 2 0.02
43 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:69257351 original size:27 final size:27
Alignment explanation
Indices: 69257212--69257370 Score: 157
Period size: 27 Copynumber: 5.9 Consensus size: 27
69257202 GGAAACGCCT
* *
69257212 TGGTGGCTATGCCACAATTTATCT-AATC
1 TGGTGGCTCTGCCACAA--TATCTGTATC
*
69257240 TGGTGGCTCTGCCACATATATCTGT-CC
1 TGGTGGCTCTGCCACA-ATATCTGTATC
* *
69257267 TGGTGGCTATGCCACAATTATTTG-ATC
1 TGGTGGCTCTGCCACAA-TATCTGTATC
69257294 TGGTGGCTCTGCCACATATATCTGT-TC
1 TGGTGGCTCTGCCACA-ATATCTGTATC
*
69257321 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGTATC
* *
69257348 TGGTGACT-TCGTCACAATATCTG
1 TGGTGGCTCT-GCCACAATATCTG
69257371 GCAGCCTCAC
Statistics
Matches: 112, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
26 10 0.09
27 85 0.76
28 16 0.14
29 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATATCTGTATC
Found at i:69257352 original size:54 final size:54
Alignment explanation
Indices: 69257212--69257352 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
69257202 GGAAACGCCT
*
69257212 TGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
* *
69257267 TGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
* *
69257321 TGGTGGCTCTGCCACAA-TATCTGTATTTGGTG
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTG
69257353 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 5 0.06
54 57 0.72
55 17 0.22
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
Found at i:69264079 original size:14 final size:14
Alignment explanation
Indices: 69264060--69264092 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
69264050 TCATAGATAT
69264060 GTGATGATTGATTG
1 GTGATGATTGATTG
69264074 GTGATGATTGATTG
1 GTGATGATTGATTG
69264088 GTGAT
1 GTGAT
69264093 ATACATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.42
Consensus pattern (14 bp):
GTGATGATTGATTG
Found at i:69265294 original size:53 final size:53
Alignment explanation
Indices: 69265193--69265333 Score: 223
Period size: 53 Copynumber: 2.7 Consensus size: 53
69265183 TGGAGGAAGC
69265193 GTCCTGGTGGCTATG-CACAATTATCT-ATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCT
69265245 GTCCTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
69265298 GTTCTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACATTATCTG-ATCTGGTG
69265334 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
52 22 0.27
53 53 0.64
54 8 0.10
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:69265329 original size:32 final size:27
Alignment explanation
Indices: 69265196--69265333 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
69265186 AGGAAGCGTC
*
69265196 CTGGTGGCTATG-CACA-ATTATCT-AT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
69265221 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACATATATCTGAT
*
69265247 CCTGGTGGCTATGCCACAT-TATCTGAT
1 -CTGGTGGCTCTGCCACATATATCTGAT
*
69265274 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
69265301 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
69265328 CTGGTG
1 CTGGTG
69265334 ACTTCGTCAC
Statistics
Matches: 101, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
25 11 0.11
26 40 0.40
27 50 0.50
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:69265330 original size:27 final size:27
Alignment explanation
Indices: 69265196--69265351 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
69265186 AGGAAGCGTC
*
69265196 CTGGTGGCTATG-CACAATTATC--TAT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
69265221 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
69265248 CTGGTGGCTATGCCACATTATCTG-AT
1 CTGGTGGCTCTGCCACAATATCTGTAT
69265274 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
69265301 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
69265328 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
69265352 GCAGCCTCAC
Statistics
Matches: 113, Mismatches: 9, Indels: 16
0.82 0.07 0.12
Matches are distributed among these distances:
25 11 0.10
26 39 0.35
27 62 0.55
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:69265350 original size:80 final size:78
Alignment explanation
Indices: 69265196--69265351 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 78
69265186 AGGAAGCGTC
*
69265196 CTGGTGGCTATGCACAATTATCTATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGC
1 CTGGTGGCTATGCACAATTATCTATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGC
*
69265261 CACATTATCTGAT
66 CACAATATCTGAT
* * *
69265274 CTGGTGGCTCTGC-CACATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCACA-AT-TATCT-ATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
69265337 -TCGTCACAATATCTG
62 AT-GCCACAATATCTG
69265352 GCAGCCTCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
77 2 0.03
78 14 0.21
79 14 0.21
80 37 0.55
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (78 bp):
CTGGTGGCTATGCACAATTATCTATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGC
CACAATATCTGAT
Found at i:69266689 original size:18 final size:16
Alignment explanation
Indices: 69266638--69266682 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
69266628 TCCCTACAAT
*
69266638 TTTATATTTATTCTTAA
1 TTTATATTTA-ACTTAA
69266655 TTTATATTTAACTTAA
1 TTTATATTTAACTTAA
69266671 TATTATTATTTA
1 T-TTA-TATTTA
69266683 CATTAATCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 6 0.24
17 13 0.52
18 6 0.24
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTATATTTAACTTAA
Found at i:69269306 original size:21 final size:23
Alignment explanation
Indices: 69269282--69269332 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
69269272 TTTAAAATTT
69269282 TAAAATAT-TTTAATTAT-AAAA
1 TAAAATATATTTAATTATAAAAA
*
69269303 TAAAATATATTTATTTATAAAAA
1 TAAAATATATTTAATTATAAAAA
69269326 TAAAATA
1 TAAAATA
69269333 ATAAAAGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 8 0.30
22 8 0.30
23 11 0.41
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
TAAAATATATTTAATTATAAAAA
Found at i:69270448 original size:9 final size:9
Alignment explanation
Indices: 69270412--69270458 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
69270402 ATTTTTATAT
69270412 AATATTAAAA
1 AATATT-AAA
*
69270422 AATATATAAT
1 AATAT-TAAA
69270432 AA-ATTAAA
1 AATATTAAA
69270440 AATATTAAA
1 AATATTAAA
*
69270449 AATATCAAA
1 AATATTAAA
69270458 A
1 A
69270459 TAAATATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
8 5 0.16
9 17 0.53
10 9 0.28
11 1 0.03
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (9 bp):
AATATTAAA
Found at i:69270460 original size:17 final size:18
Alignment explanation
Indices: 69270407--69270444 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
69270397 ATATTATTTT
69270407 TATATAAT--ATTAAAAAA
1 TATATAATAAATT-AAAAA
69270424 TATATAATAAATTAAAAA
1 TATATAATAAATTAAAAA
69270442 TAT
1 TAT
69270445 TAAAAATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 8 0.42
19 3 0.16
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TATATAATAAATTAAAAA
Found at i:69270566 original size:22 final size:22
Alignment explanation
Indices: 69270508--69270566 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
69270498 ATGTATATAT
*
69270508 AAATAATAATAAGATATATGTA
1 AAATAATAATAAAATATATGTA
* * * *
69270530 AATTAATAGGT-AAATATTTTTA
1 AAATAATA-ATAAAATATATGTA
69270552 AAATAATAATAAAAT
1 AAATAATAATAAAAT
69270567 TAATAAATAT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.36
Consensus pattern (22 bp):
AAATAATAATAAAATATATGTA
Found at i:69270593 original size:29 final size:30
Alignment explanation
Indices: 69270540--69270601 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
69270530 AATTAATAGG
*
69270540 TAAATATTTTTAAAATAATAATAAAATTAA
1 TAAATATCTTTAAAATAATAATAAAATTAA
69270570 TAAATATCTTT-AAATAATAATAAAATTAA
1 TAAATATCTTTAAAATAATAATAAAATTAA
69270599 TAA
1 TAA
69270602 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (30 bp):
TAAATATCTTTAAAATAATAATAAAATTAA
Found at i:69270603 original size:32 final size:33
Alignment explanation
Indices: 69270529--69270605 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 33
69270519 AGATATATGT
* *
69270529 AAATTAATAGGTAAATATTTTTAAAATAATAATA
1 AAATTAATA-ATAAATATCTTTAAAATAATAATA
69270563 AAA-T--TAATAAATATCTTT-AAATAATAATA
1 AAATTAATAATAAATATCTTTAAAATAATAATA
69270592 AAATTAATAATAAA
1 AAATTAATAATAAA
69270606 ATAAGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
29 14 0.37
30 11 0.29
31 2 0.05
32 7 0.18
33 1 0.03
34 3 0.08
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (33 bp):
AAATTAATAATAAATATCTTTAAAATAATAATA
Found at i:69271158 original size:15 final size:15
Alignment explanation
Indices: 69271138--69271167 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69271128 AGTTTAAAGT
*
69271138 TTAAAATAATTGTAA
1 TTAAAATAATAGTAA
69271153 TTAAAATAATAGTAA
1 TTAAAATAATAGTAA
69271168 AAATAACAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (15 bp):
TTAAAATAATAGTAA
Found at i:69273681 original size:17 final size:17
Alignment explanation
Indices: 69273659--69273700 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
69273649 CTAGAGTCAT
69273659 ATTTCAAATCGCGGAAG
1 ATTTCAAATCGCGGAAG
69273676 ATTTCAAATCGCGGAAG
1 ATTTCAAATCGCGGAAG
*
69273693 CTTTCAAA
1 ATTTCAAA
69273701 ACCAATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (17 bp):
ATTTCAAATCGCGGAAG
Found at i:69279272 original size:8 final size:8
Alignment explanation
Indices: 69279254--69279299 Score: 58
Period size: 8 Copynumber: 5.8 Consensus size: 8
69279244 TTTAAGAAAT
69279254 TAATAATTA
1 TAATAA-TA
69279263 TAATAATA
1 TAATAATA
*
69279271 TAATAGT-
1 TAATAATA
69279278 TAATAATA
1 TAATAATA
*
69279286 TAATAAAA
1 TAATAATA
69279294 TAATAA
1 TAATAA
69279300 AGAAATGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.18
8 21 0.64
9 6 0.18
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (8 bp):
TAATAATA
Found at i:69279291 original size:23 final size:24
Alignment explanation
Indices: 69279253--69279298 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
69279243 ATTTAAGAAA
*
69279253 TTAATAATTATAATAATATAATAG
1 TTAATAATTATAATAAAATAATAG
69279277 TTAATAA-TATAATAAAATAATA
1 TTAATAATTATAATAAAATAATA
69279299 AAGAAATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
TTAATAATTATAATAAAATAATAG
Found at i:69279310 original size:16 final size:15
Alignment explanation
Indices: 69279291--69279324 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
69279281 TAATATAATA
*
69279291 AAATAATAAAGAAATG
1 AAATAAAAAAGAAA-G
69279307 AAATAAAAAAGAAAG
1 AAATAAAAAAGAAAG
69279322 AAA
1 AAA
69279325 GAAGGCACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (15 bp):
AAATAAAAAAGAAAG
Found at i:69281878 original size:10 final size:10
Alignment explanation
Indices: 69281847--69281878 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
69281837 AAATTTGGTT
69281847 ATCATACCAA
1 ATCATACCAA
*
69281857 AACATACCAA
1 ATCATACCAA
69281867 ATCATACCAA
1 ATCATACCAA
69281877 AT
1 AT
69281879 AATCACATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (10 bp):
ATCATACCAA
Found at i:69287697 original size:24 final size:24
Alignment explanation
Indices: 69287655--69287705 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
69287645 TGGTTTTGAA
* * *
69287655 CTAGAGTGTCAAGTTCCTCTATTT
1 CTAGAGTGTCAACTACCTCTATCT
*
69287679 CTAGAGTGTCGACTACCTCTATCT
1 CTAGAGTGTCAACTACCTCTATCT
69287703 CTA
1 CTA
69287706 CTAGAATATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (24 bp):
CTAGAGTGTCAACTACCTCTATCT
Found at i:69289120 original size:12 final size:12
Alignment explanation
Indices: 69289103--69289127 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69289093 CCTCAAACGC
69289103 CCATGTGCTAGG
1 CCATGTGCTAGG
69289115 CCATGTGCTAGG
1 CCATGTGCTAGG
69289127 C
1 C
69289128 AGTGCAACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (12 bp):
CCATGTGCTAGG
Found at i:69300577 original size:24 final size:22
Alignment explanation
Indices: 69300536--69300579 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
69300526 AATTAATCAA
*
69300536 ATTTCATATACATGTATCATCC
1 ATTTCATATACATATATCATCC
69300558 ATTTCATATATCTATATATCAT
1 ATTTCATATA-C-ATATATCAT
69300580 GTAACATCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 1 0.05
24 8 0.42
ACGTcount: A:0.34, C:0.18, G:0.02, T:0.45
Consensus pattern (22 bp):
ATTTCATATACATATATCATCC
Found at i:69302166 original size:26 final size:26
Alignment explanation
Indices: 69302095--69302169 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 26
69302085 CTCTTTTATG
* * *
69302095 TTACGCCATACAAGCTTTCCTTCAGA
1 TTACACCACACAAGCTTTCTTTCAGA
** *
69302121 TTATGCCACACAAGCTTTCTTTCATA
1 TTACACCACACAAGCTTTCTTTCAGA
*
69302147 TTACACCACATAAGCTTTCTTTC
1 TTACACCACACAAGCTTTCTTTC
69302170 CTGACGTGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.29, G:0.08, T:0.36
Consensus pattern (26 bp):
TTACACCACACAAGCTTTCTTTCAGA
Found at i:69307404 original size:16 final size:17
Alignment explanation
Indices: 69307372--69307405 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
69307362 GGGGAGGGAG
69307372 TTTGTTTGATGTTTATT
1 TTTGTTTGATGTTTATT
*
69307389 TTTGTTT-ATTTTTATT
1 TTTGTTTGATGTTTATT
69307405 T
1 T
69307406 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (17 bp):
TTTGTTTGATGTTTATT
Found at i:69309904 original size:49 final size:49
Alignment explanation
Indices: 69309847--69309946 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
69309837 CTTAATGATG
* *
69309847 AGCATGTTACCTTTAGTGTTTTCGAATCTATTCAATGCAAGGATAAAGA
1 AGCATGTTACCTTTAGTGCTTTCGAATCTATTCAATGCAAGCATAAAGA
69309896 AGCATGTTACCTTTAGTGCTTTCGAATCTATTCAATGCAAGCATAAAGA
1 AGCATGTTACCTTTAGTGCTTTCGAATCTATTCAATGCAAGCATAAAGA
69309945 AG
1 AG
69309947 AATGCCATAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (49 bp):
AGCATGTTACCTTTAGTGCTTTCGAATCTATTCAATGCAAGCATAAAGA
Found at i:69314786 original size:333 final size:333
Alignment explanation
Indices: 69314180--69315170 Score: 1883
Period size: 333 Copynumber: 3.0 Consensus size: 333
69314170 GATTGTACGG
*
69314180 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACATAAAATCACTCTTTTCTATTT
1 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
* *
69314245 ATTCTGTACAGGCAATCCACAGAGTTAGGCAGATCGGTGCAACAGAGACTCAGGGGTGGCCACTT
66 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAGCAGAGACTCAGGGGTGGCCACTT
69314310 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
131 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
*
69314375 AATTTTAGGGACTCCCTGGACTATTCGATTTTAACTTAATTTTGGATTTGAACATTCGTTATTTT
196 AATTTTAGGGACTCCCTGGACTATTCGATTTTAACTTAATTTTGGATTTGAACGTTCGTTATTTT
*
69314440 GCATGCTTGATAAATTGCTTACAAAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
261 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
69314505 CGTTCGTT
326 CGTTCGTT
69314513 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
1 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
*
69314578 ATTCTGTACAGGCAATCCACAGAGTTAGGTGGATCGGTGCAGCAGAGACTCAGGGGTGGCCACTT
66 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAGCAGAGACTCAGGGGTGGCCACTT
* *
69314643 TATTGTAAACTACTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAAAGTTGTA
131 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
69314708 AATTTTAGGGACTCCCTGGACTATTCGATTTTAACTTAATTTTGGATTTGAACGTTCGTTATTTT
196 AATTTTAGGGACTCCCTGGACTATTCGATTTTAACTTAATTTTGGATTTGAACGTTCGTTATTTT
69314773 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
261 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
69314838 CGTTCGTT
326 CGTTCGTT
69314846 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
1 ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
*
69314911 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAGCAGAGACTTAGGGGTGGCCACTT
66 ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAGCAGAGACTCAGGGGTGGCCACTT
69314976 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
131 TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
*
69315041 AATTTTAGGGACTCTCTGGACTATTCGATTTTAACTTAATTTTGGATTTGAACGTTCGTTATTTT
196 AATTTTAGGGACTCCCTGGACTATTCGATTTTAACTTAATTTTGGATTTGAACGTTCGTTATTTT
*
69315106 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACATACAAACGAGATTTTCCTAAAATCTCA
261 GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
69315171 AATCGGGTTT
Statistics
Matches: 644, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
333 644 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (333 bp):
ATTTTTGCATGCTTAATTTTGTGGGGTTACACACTGAGCTTACACAAAATCACTCTTTTCTATTT
ATTCTGTACAGGCAATCCACAGAGTTAGGCGGATCGGTGCAGCAGAGACTCAGGGGTGGCCACTT
TATTGTAAACTGCTAAAACTTGGTATTTTGGTTAATTTAAAATTTGGACTGTTTTGAGAGTTGTA
AATTTTAGGGACTCCCTGGACTATTCGATTTTAACTTAATTTTGGATTTGAACGTTCGTTATTTT
GCATGCTTGATAAATTGCTTACAGAAAAGGATTTTACACACAAACGAGATTTTCCTAAAATCTCA
CGTTCGTT
Found at i:69317018 original size:16 final size:16
Alignment explanation
Indices: 69316991--69317033 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
69316981 TTGGTCGAAA
69316991 AATTTTAATTTTTATGG
1 AATTTT-ATTTTTATGG
*
69317008 AA-TTTATTTTTATGT
1 AATTTTATTTTTATGG
69317023 AATTTTATTTT
1 AATTTTATTTT
69317034 ATTTTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 11 0.46
16 11 0.46
17 2 0.08
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (16 bp):
AATTTTATTTTTATGG
Found at i:69318367 original size:13 final size:12
Alignment explanation
Indices: 69318335--69318368 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
69318325 GACAAGGAAA
69318335 GGAAAAACCAAG
1 GGAAAAACCAAG
*
69318347 GCAAAAACCAAG
1 GGAAAAACCAAG
69318359 GGAACAAACC
1 GGAA-AAACC
69318369 TGGCTACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.56, C:0.24, G:0.21, T:0.00
Consensus pattern (12 bp):
GGAAAAACCAAG
Found at i:69326237 original size:47 final size:45
Alignment explanation
Indices: 69326116--69326277 Score: 238
Period size: 45 Copynumber: 3.6 Consensus size: 45
69326106 TGTACAGTAC
* *
69326116 TATTCAGG-CCTTTGAGCCTAGCAGGCTATAATACCGGTGAGATAC
1 TATTC-GGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
69326161 TATTCGGAACTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
69326206 TATTCGGCCCTTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGACC--TTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
69326253 TATTCGGGCC-TTGAGCCTAGCAGGC
1 TATTCGGACCTTTGAGCCTAGCAGGC
69326278 GAAATGTTGG
Statistics
Matches: 108, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
44 17 0.16
45 47 0.44
47 44 0.41
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (45 bp):
TATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:69328103 original size:55 final size:53
Alignment explanation
Indices: 69328016--69328225 Score: 217
Period size: 55 Copynumber: 3.9 Consensus size: 53
69328006 ATTAGGGTTT
* *
69328016 AAGGATACCATGTAAGACCATGCCAGGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
69328071 AAGGATACCATGTAAGATCATGTCAAGACATGGCATTGATAAGTTACTATAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * * *
69328126 AAAGG-TCCCATGTAAGACCATGCTAAGGCATGGCATTGGTGAG-CTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
** *
69328179 AAGGATACCATGTAAGACCATGCCGGGACATGGCAATGGTAAGTTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC
69328226 AAAAGGATAC
Statistics
Matches: 124, Mismatches: 25, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
52 5 0.04
53 39 0.31
54 9 0.07
55 67 0.54
56 4 0.03
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:69328222 original size:108 final size:110
Alignment explanation
Indices: 69328023--69328223 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
69328013 TTTAAGGATA
* *
69328023 CCATGTAAGACCATGCCAGGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGATACCATGTAAGA
* * *
69328088 TCATGTCAAGACATGGCATTGATAAGTTACTATAAGACAAAGGTC
66 CCATGCCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTC
* *
69328133 CCATGTAAGACCATGCTAAGGCATGGC-ATTGGTGA-G-CTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTC-TAAGGCAAGGATACCATGTAAG
** *
69328195 ACCATGCCGGGACATGGCAATGGTAAGTT
65 ACCATGCCAAGACATGGCAATGATAAGTT
69328224 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 2 0.03
108 46 0.57
109 7 0.09
110 25 0.31
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGATACCATGTAAGA
CCATGCCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTC
Found at i:69335758 original size:55 final size:54
Alignment explanation
Indices: 69335677--69335915 Score: 219
Period size: 55 Copynumber: 4.5 Consensus size: 54
69335667 ATTAAGGTTT
* *
69335677 AAGGATACCATGTAAGACCATATCAAGGA-ATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGACATGAC-ATTGGTAA-GTTTCTAAGGC
* * * *
69335732 AAGGATACCACGTAAGACCATGTCAA-GACATGACATTGATAAGTTACTATAAGAC
1 AAGGATACCATGTAAGACCATGTCAAGGACATGACATTGGTAAGTT--TCTAAGGC
* * * * *
69335787 AAAGG-TCCCATGTAAAACCATGTCAAGG-CATGGCATTAGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGGACATGACATTGGTAAGTTTC-TAAGGC
* *
69335840 AAGGATACCATGTAAGACCATGTCGA-GACATGACAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGGACATGACATTGGTAAGTTTCTAAGGC
* *
69335889 AAGGATACCACGTAAGACCATGACAAG
1 AAGGATACCATGTAAGACCATGTCAAG
69335916 TCATGGTAAC
Statistics
Matches: 149, Mismatches: 25, Indels: 25
0.75 0.13 0.13
Matches are distributed among these distances:
49 23 0.15
52 8 0.05
53 37 0.25
54 13 0.09
55 63 0.42
56 5 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGGACATGACATTGGTAAGTTTCTAAGGC
Found at i:69335883 original size:108 final size:110
Alignment explanation
Indices: 69335684--69335884 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
69335674 TTTAAGGATA
* *
69335684 CCATGTAAGACCATATCAAGGAATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCACGTAAGA
1 CCATGTAAAACCATATCAAGGAATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCACGTAAGA
*
69335749 CCATGTCAAGACATGACATTGATAAGTTACTATAAGACAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTACTATAAGACAAAGGTC
* * * *
69335794 CCATGTAAAACCATGTCAAGGCATGGC-ATTAGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAAACCATATCAAGGAATGGCAATTAGTAAGGTTTC-TAAGGCAAGGATACCACGTAAG
* *
69335856 ACCATGTCGAGACATGACAATGGTAAGTT
65 ACCATGTCAAGACATGACAATGATAAGTT
69335885 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 6 0.07
110 24 0.30
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (110 bp):
CCATGTAAAACCATATCAAGGAATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCACGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACTATAAGACAAAGGTC
Found at i:69338325 original size:8 final size:8
Alignment explanation
Indices: 69338309--69338346 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
69338299 TTAATTAATG
*
69338309 TAATGTAA
1 TAATATAA
69338317 TAATATAA
1 TAATATAA
69338325 TAATATAA
1 TAATATAA
69338333 TAATATAA
1 TAATATAA
69338341 TAATAT
1 TAATAT
69338347 TTACTTATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (8 bp):
TAATATAA
Found at i:69346403 original size:32 final size:32
Alignment explanation
Indices: 69346362--69346423 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
69346352 GGCCCACATG
* *
69346362 GCCCAATAGGTTGAGCCCGTGTGTCATACACA
1 GCCCAATAGGTCGAGCCCATGTGTCATACACA
*
69346394 GCCCAATAGGTCGAGCCCATGTGTCGTACA
1 GCCCAATAGGTCGAGCCCATGTGTCATACA
69346424 TGGCCTTACC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (32 bp):
GCCCAATAGGTCGAGCCCATGTGTCATACACA
Found at i:69359625 original size:27 final size:27
Alignment explanation
Indices: 69359587--69359643 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
69359577 ATTCTCAATG
69359587 TATGATTACTTATGGTTTATTTTGAGA
1 TATGATTACTTATGGTTTATTTTGAGA
69359614 TATGATTACTTATGGTTTATTTTGAGA
1 TATGATTACTTATGGTTTATTTTGAGA
69359641 TAT
1 TAT
69359644 TATTGATAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.04, G:0.18, T:0.53
Consensus pattern (27 bp):
TATGATTACTTATGGTTTATTTTGAGA
Found at i:69368018 original size:17 final size:17
Alignment explanation
Indices: 69367996--69368035 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
69367986 TCCTTTATTA
69367996 CGTTTTTAAGATTCATT
1 CGTTTTTAAGATTCATT
69368013 CGTTTTTAAGATTCATT
1 CGTTTTTAAGATTCATT
*
69368030 TGTTTT
1 CGTTTT
69368036 CCTTTTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.20, C:0.10, G:0.12, T:0.57
Consensus pattern (17 bp):
CGTTTTTAAGATTCATT
Found at i:69370182 original size:14 final size:13
Alignment explanation
Indices: 69370162--69370193 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
69370152 AATATTTAAC
69370162 TTGTTCTTAATTA
1 TTGTTCTTAATTA
69370175 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
69370189 TTGTT
1 TTGTT
69370194 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:69379633 original size:48 final size:48
Alignment explanation
Indices: 69379559--69379926 Score: 467
Period size: 48 Copynumber: 7.7 Consensus size: 48
69379549 TAGGAGTTAT
* * *
69379559 ATTGATTTGGCTTCGGGCCATAATATTAGCACTTCATGTGCAAG-TTC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGCTTC
* **
69379606 TATTGATTTGACTTCGGGCCATGATATTAGTGCTTCAGGTGCGAG-TTAC
1 -ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGCTT-C
** * *
69379655 ATTGATTTGGCTAAGGGCCATGATATTAGCACTTCGGGTGTGAG-TTAC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGCTT-C
* * * **
69379703 ATTGATTTGACTTCGGGCAATGATATTGGCACTTC-GAGTATGAGCTTC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAG-GTGCGAGCTTC
* *
69379751 ATTGATTTGGCTTCGGGTCATGATATTGGCACTTC-GAGTGCGAGCTTC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAG-GTGCGAGCTTC
* **
69379799 ATTGATTTGGCTTCGGGCCATGATATTGGCACTTTGGGTGCGAGCTTC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGCTTC
*
69379847 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGGGCTTC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGCTTC
69379895 ATTGATTTGGCTTCGGGCCATGATATTAGCAC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCAC
69379927 CTAGGGTGCG
Statistics
Matches: 286, Mismatches: 30, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
47 1 0.00
48 281 0.98
49 4 0.01
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (48 bp):
ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGAGCTTC
Found at i:69383267 original size:27 final size:27
Alignment explanation
Indices: 69383237--69383414 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69383227 ATATTAAGTC
* * *
69383237 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
69383264 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
69383292 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
69383319 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
69383346 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
69383373 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
69383400 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69383415 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:69383321 original size:55 final size:54
Alignment explanation
Indices: 69383237--69383414 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
69383227 ATATTAAGTC
* * *
69383237 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
69383292 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
69383346 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
69383400 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69383415 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:69383403 original size:81 final size:82
Alignment explanation
Indices: 69383258--69383413 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
69383248 TGCTATATAA
* *
69383258 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
69383323 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
69383340 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
69383403 ACACTTAGTGC
65 ACACTTAGTGC
69383414 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:69391536 original size:27 final size:27
Alignment explanation
Indices: 69391506--69391683 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69391496 ATATTAAGTC
* * *
69391506 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
69391533 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
69391561 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
69391588 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
69391615 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
69391642 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
69391669 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69391684 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:69391590 original size:55 final size:54
Alignment explanation
Indices: 69391506--69391683 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
69391496 ATATTAAGTC
* * *
69391506 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
69391561 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
69391615 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
69391669 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69391684 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:69391672 original size:81 final size:82
Alignment explanation
Indices: 69391527--69391682 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
69391517 TGCTATATAA
* *
69391527 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
69391592 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
69391609 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
69391672 ACACTTAGTGC
65 ACACTTAGTGC
69391683 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:69394280 original size:21 final size:21
Alignment explanation
Indices: 69394242--69394291 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
69394232 GTTTTAAGAA
*
69394242 TTGTTTTAGTATCATTTTTAT
1 TTGTTTTAATATCATTTTTAT
**
69394263 TTGTTTTAATATTTTTTTTAT
1 TTGTTTTAATATCATTTTTAT
*
69394284 GT-TTTTAA
1 TTGTTTTAA
69394292 ACATATTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.70
Consensus pattern (21 bp):
TTGTTTTAATATCATTTTTAT
Found at i:69397279 original size:25 final size:26
Alignment explanation
Indices: 69397251--69397301 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
69397241 CTTATTTCAT
*
69397251 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATGTTTAAAAACATAA
* *
69397276 TAAATCAAATATGTTTAAAAACATAA
1 TAAATAAAAAATGTTTAAAAACATAA
69397302 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATGTTTAAAAACATAA
Done.