Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 221 of 325
Found at i:69397293 original size:26 final size:24
Alignment explanation
Indices: 69397263--69397311 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
69397253 AATAAAAAAT
*
69397263 TTTAAAAATATAATAAATCAAATATG
1 TTTAAAAACATAA-AAA-CAAATATG
69397289 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
69397312 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATG
Found at i:69401297 original size:30 final size:31
Alignment explanation
Indices: 69401241--69401306 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 31
69401231 ATTTCTTTTC
*
69401241 AAATAAATATAATAATATACTATTAA-TAAT
1 AAATAAAAATAATAATATACTATTAATTAAT
* *
69401271 AAATAAAAATAATTATA-ATTATTTAATTAAT
1 AAATAAAAATAATAATATACTA-TTAATTAAT
*
69401302 TAATA
1 AAATA
69401307 GTGTTTTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 3 0.10
30 19 0.63
31 8 0.27
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (31 bp):
AAATAAAAATAATAATATACTATTAATTAAT
Found at i:69402102 original size:21 final size:23
Alignment explanation
Indices: 69402078--69402124 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
69402068 GTTATTTAAA
* *
69402078 AATTAATTTTTTATAA-AT-TTT
1 AATTAAATTTATATAATATATTT
69402099 AATTAAATTTATATAATATATTT
1 AATTAAATTTATATAATATATTT
69402122 AAT
1 AAT
69402125 ACACTTTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
22 2 0.09
23 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
AATTAAATTTATATAATATATTT
Found at i:69402993 original size:21 final size:21
Alignment explanation
Indices: 69402969--69403013 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
69402959 TTTTGCTCTA
69402969 CTCTG-CTGCCATCGATGCTGC
1 CTCTGTCT-CCATCGATGCTGC
* *
69402990 CTCTGTCTCCCTCGCTGCTGC
1 CTCTGTCTCCATCGATGCTGC
69403011 CTC
1 CTC
69403014 CGCTCTAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.04, C:0.44, G:0.20, T:0.31
Consensus pattern (21 bp):
CTCTGTCTCCATCGATGCTGC
Found at i:69403448 original size:13 final size:14
Alignment explanation
Indices: 69403423--69403451 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69403413 TGATGAATTG
69403423 AATTAAACAATTAT
1 AATTAAACAATTAT
69403437 AATTAAAC-ATTAT
1 AATTAAACAATTAT
69403450 AA
1 AA
69403452 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:69408551 original size:9 final size:9
Alignment explanation
Indices: 69408536--69408642 Score: 83
Period size: 9 Copynumber: 11.7 Consensus size: 9
69408526 ATATTTATGT
69408536 ATTATGTAA
1 ATTATGTAA
*
69408545 GTTATGTAA
1 ATTATGTAA
69408554 ATTATGTAA
1 ATTATGTAA
* **
69408563 GTTATCCAA
1 ATTATGTAA
69408572 ATTATGTAA
1 ATTATGTAA
*
69408581 ATTATTTAA
1 ATTATGTAA
*
69408590 GATGTGATATATA
1 -AT-T-ATGTA-A
*
69408603 TTTATGT--
1 ATTATGTAA
69408610 ATTATGTAA
1 ATTATGTAA
*
69408619 GTTATGTAA
1 ATTATGTAA
69408628 ATTATGTAA
1 ATTATGTAA
*
69408637 AATATG
1 ATTATG
69408643 ATATATATTT
Statistics
Matches: 76, Mismatches: 16, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
7 6 0.08
9 57 0.75
10 5 0.07
11 2 0.03
12 5 0.07
13 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (9 bp):
ATTATGTAA
Found at i:69408559 original size:18 final size:18
Alignment explanation
Indices: 69408536--69408636 Score: 98
Period size: 18 Copynumber: 5.5 Consensus size: 18
69408526 ATATTTATGT
69408536 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
**
69408554 ATTATGTAAGTTATCCAA
1 ATTATGTAAGTTATGTAA
* *
69408572 ATTATGTAAATTATTTAA
1 ATTATGTAAGTTATGTAA
* *
69408590 GATGTGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
69408610 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
69408628 ATTATGTAA
1 ATTATGTAA
69408637 AATATGATAT
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
16 7 0.10
17 4 0.06
18 41 0.61
19 4 0.06
20 1 0.01
21 4 0.06
22 6 0.09
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.46
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:69409028 original size:5 final size:5
Alignment explanation
Indices: 69409018--69409042 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
69409008 TTTTTGTGAT
69409018 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
69409043 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:69409122 original size:5 final size:5
Alignment explanation
Indices: 69409112--69409136 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
69409102 TTTTCCTGAT
69409112 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
69409137 ATTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:69409219 original size:5 final size:5
Alignment explanation
Indices: 69409209--69409233 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
69409199 TTTTCTTGAT
69409209 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
69409234 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:69409250 original size:97 final size:97
Alignment explanation
Indices: 69408835--69409291 Score: 743
Period size: 97 Copynumber: 4.8 Consensus size: 97
69408825 TTTTTGTGAT
*
69408835 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTATTTAGGTAATTTAAAAATAAAATA
1 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
*
69408900 AAAGTAAACAAAAGTTTTTTTCCTGA-T----
66 AAAGTAGACAAAAGTTTTTTTCCTGATTAAAA
* *
69408927 TAAAATAAAATAAAATAAAACTTTAAATACAATTTACTTTAATTAGGTAATTTAACAATAAAATA
1 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
* *
69408992 AAAGTAGACAAAGGTTTTTTT-GTGATTAAAA
66 AAAGTAGACAAAAGTTTTTTTCCTGATTAAAA
69409023 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
1 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
69409088 AAAGTAGAC--AAG-TTTTTTCCTGATTAAAA
66 AAAGTAGACAAAAGTTTTTTTCCTGATTAAAA
*
69409117 TAAAATAAAATAAAATAAAAATTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
1 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
* * *
69409182 AAATTTGACAAAAGTTTTTTTCTTGATTAAAA
66 AAAGTAGACAAAAGTTTTTTTCCTGATTAAAA
69409214 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
1 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
* *
69409279 AAATTTGACAAAA
66 AAAGTAGACAAAA
69409292 TATTTTAAAC
Statistics
Matches: 341, Mismatches: 15, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
91 3 0.01
92 82 0.24
93 6 0.02
94 82 0.24
96 75 0.22
97 93 0.27
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.35
Consensus pattern (97 bp):
TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
AAAGTAGACAAAAGTTTTTTTCCTGATTAAAA
Found at i:69409424 original size:99 final size:97
Alignment explanation
Indices: 69409254--69409438 Score: 266
Period size: 99 Copynumber: 1.9 Consensus size: 97
69409244 AATTTAATTT
* * **
69409254 AATTAGGTAATTTAAAAATAAAATAAAATTTGACAAAATATTTTAAACATTGTTAAGTCTTTCTT
1 AATTAGGTAATATAAAAATAAAATAAAATATGACAAAATACATTAAACATTGTTAAGTCTTTCTT
*
69409319 TTAATTTGCATTTATTAATTTGTTAATTTAAA
66 TCAATTTGCATTTATTAATTTGTTAATTTAAA
*
69409351 AATTAGGTAATATAAAAATAAAATAAAATAT-ATAATTTAATGACATTAAAC-TTGTTAAGTCTT
1 AATTAGGTAATATAAAAATAAAATAAAATATGACAA---AAT-ACATTAAACATTGTTAAGTCTT
69409414 TCTTTCAATTTGCATTTATTAATTT
62 TCTTTCAATTTGCATTTATTAATTT
69409439 AAGTAAACAT
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
96 3 0.04
97 29 0.37
99 39 0.50
100 7 0.09
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Consensus pattern (97 bp):
AATTAGGTAATATAAAAATAAAATAAAATATGACAAAATACATTAAACATTGTTAAGTCTTTCTT
TCAATTTGCATTTATTAATTTGTTAATTTAAA
Found at i:69410114 original size:8 final size:8
Alignment explanation
Indices: 69410101--69410155 Score: 58
Period size: 8 Copynumber: 7.0 Consensus size: 8
69410091 CAAAAAATTC
69410101 CACTATTA
1 CACTATTA
*
69410109 CACTATCA
1 CACTATTA
69410117 CACTA-TA
1 CACTATTA
* *
69410124 CGCAATTA
1 CACTATTA
*
69410132 CACTATTC
1 CACTATTA
*
69410140 CACTATTC
1 CACTATTA
69410148 CACTATTA
1 CACTATTA
69410156 TCATAATCAC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
7 4 0.11
8 34 0.89
ACGTcount: A:0.35, C:0.31, G:0.02, T:0.33
Consensus pattern (8 bp):
CACTATTA
Found at i:69412034 original size:157 final size:155
Alignment explanation
Indices: 69411735--69412114 Score: 364
Period size: 157 Copynumber: 2.4 Consensus size: 155
69411725 ATCTCCAAAG
* *
69411735 AAAACGACGCCG-TTTCTGTTAAGTACT-AA-T-TTTTTTGCAGCGTTTATTTA-AAAAACGCCG
1 AAAACGACGCCGTTTTCT-TTAA--ACTAAACTATCTTTTGCAGCGTTT-TCTATAAAAACGCCG
* * *
69411795 CTAATCCCTATATATTTAACTAAAATGACGACGTGTACAGTAAAATTTAATTATTTTGCGGCATT
62 CTAATCCCTATATATTCAACTAAAACGACGAC-TGTACAGTAAAATTTAATTATGTTGCGGCATT
* *
69411860 TTTAAAAGTGCCTCTAATACCCTCAT-ATACT
126 TTTAAAAGCGCCACTAATACCCT-ATCA-ACT
* * **
69411891 AAAACGGCGCCGTTTTCTTTAAACTAAACTGTCTTTTGTGGCGTTTTCTATAAAAACGCCGC-AA
1 AAAACGACGCCGTTTTCTTTAAACTAAACTATCTTTTGCAGCGTTTTCTATAAAAACGCCGCTAA
* * * * * *
69411955 TCCTCTATATATTCAACTAAAACGACGA-TGCTTCTAGTACAGTTTACTTCTGTTGCGGCGTTTT
66 TCC-CTATATATTCAACTAAAACGACGACTG-TAC-AGTAAAATTTAATTATGTTGCGGCATTTT
*
69412019 TCAAAA-CGCCACTAATACTCTATCCAACT
128 T-AAAAGCGCCACTAATACCCTAT-CAACT
* * * * * * *
69412048 AAAATGACGCCGTTTTCTTTCAACTATACTATTTTTTGCAGCGTTTTTTTTAAAAACGCCACTAA
1 AAAACGACGCCGTTTTCTTTAAACTAAACTATCTTTTGCAGCGTTTTCTATAAAAACGCCGCTAA
69412113 TC
66 TC
69412115 TCTTAATTTT
Statistics
Matches: 184, Mismatches: 28, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
154 3 0.02
155 4 0.02
156 28 0.15
157 140 0.76
158 9 0.05
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (155 bp):
AAAACGACGCCGTTTTCTTTAAACTAAACTATCTTTTGCAGCGTTTTCTATAAAAACGCCGCTAA
TCCCTATATATTCAACTAAAACGACGACTGTACAGTAAAATTTAATTATGTTGCGGCATTTTTAA
AAGCGCCACTAATACCCTATCAACT
Found at i:69413605 original size:38 final size:37
Alignment explanation
Indices: 69413561--69413639 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 37
69413551 TCCAAGGCGC
*
69413561 CGCTAATGGTCAAGC-TATAGCGGCGTTTCTCATATAAG
1 CGCTAATGCTCAA-CATATAGCGGCGTTTC-CATATAAG
* * *
69413599 CGCTAATTCTCAACATATAGCGGCTTTTCCTTATAAG
1 CGCTAATGCTCAACATATAGCGGCGTTTCCATATAAG
69413636 CGCT
1 CGCT
69413640 GCTAATGCTC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 12 0.33
38 24 0.67
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (37 bp):
CGCTAATGCTCAACATATAGCGGCGTTTCCATATAAG
Found at i:69413719 original size:40 final size:39
Alignment explanation
Indices: 69413640--69413723 Score: 114
Period size: 39 Copynumber: 2.1 Consensus size: 39
69413630 TATAAGCGCT
* * *
69413640 GCTAATGCTCTTTTTTAGTGGCGTTTTTGTGGAAGCGCC
1 GCTAATGCTCTTTTCTAGTGGCGTTTTTGTGAAAACGCC
* *
69413679 GCTAATGCTCTTTTCTAGTGGCCTTTTTTGTTAAAACGCC
1 GCTAATGCTCTTTTCTAGTGG-CGTTTTTGTGAAAACGCC
69413719 GCTAA
1 GCTAA
69413724 AAGCGCCACT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 20 0.51
40 19 0.49
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (39 bp):
GCTAATGCTCTTTTCTAGTGGCGTTTTTGTGAAAACGCC
Found at i:69414148 original size:12 final size:12
Alignment explanation
Indices: 69414131--69414158 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
69414121 AGGAAAACAG
69414131 GTTTTTAGTGGC
1 GTTTTTAGTGGC
69414143 GTTTTTAGTGGC
1 GTTTTTAGTGGC
69414155 GTTT
1 GTTT
69414159 GGACAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.32, T:0.54
Consensus pattern (12 bp):
GTTTTTAGTGGC
Found at i:69414358 original size:111 final size:111
Alignment explanation
Indices: 69414164--69414401 Score: 388
Period size: 111 Copynumber: 2.1 Consensus size: 111
69414154 CGTTTGGACA
*
69414164 AAAAACGCCGCAAAAGTTATACATTAGTGGCGCTAATAGGAAAACACCACAAAAGGTTAGAGCTA
1 AAAAATGCCGCAAAAGTTATACATTAGTGGCGCTAATAGGAAAACACCACAAAAGGTTAGAGCTA
* * *
69414229 TAGCTGTGTTTTAAACAAAAGGTCAAGCAGTAGCGGGGTTTATGAT
66 TAGCTGCGTTTTAAACAAAAGGTCAAGCAGTAGCAGCGTTTATGAT
* *
69414275 AAAAATGCCGCAAAAGTTATACATTAGTGGCGCTAATAGGAAAACGCCGCAAAAGGTTAGAGCTA
1 AAAAATGCCGCAAAAGTTATACATTAGTGGCGCTAATAGGAAAACACCACAAAAGGTTAGAGCTA
* *
69414340 TAGC-GCCGTTTTTAACAAAAGGTCAAGTAGTAGCAGCGTTTATGAT
66 TAGCTG-CGTTTTAAACAAAAGGTCAAGCAGTAGCAGCGTTTATGAT
69414386 AAAAATGCCGCAAAAG
1 AAAAATGCCGCAAAAG
69414402 GTCAAGCAGT
Statistics
Matches: 118, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
110 1 0.01
111 117 0.99
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (111 bp):
AAAAATGCCGCAAAAGTTATACATTAGTGGCGCTAATAGGAAAACACCACAAAAGGTTAGAGCTA
TAGCTGCGTTTTAAACAAAAGGTCAAGCAGTAGCAGCGTTTATGAT
Found at i:69414453 original size:40 final size:41
Alignment explanation
Indices: 69414355--69414468 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 41
69414345 CCGTTTTTAA
* * **
69414355 CAAAAGGTCAAGTAGTAGCAGCGTTTATGATAAAAATGCCG
1 CAAAAGGTCAAGCAGTAGCAGTGTTTATGATAAAAACACCG
* *
69414396 CAAAAGGTCAAGCAGTAGCAGTGTTTATGGTAAAAACACTG
1 CAAAAGGTCAAGCAGTAGCAGTGTTTATGATAAAAACACCG
*
69414437 C-AAAGGTGAAGCAGTAG-AGATGTTTATGATAA
1 CAAAAGGTCAAGCAGTAGCAG-TGTTTATGATAA
69414469 TTTTATTTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.03
40 26 0.41
41 36 0.56
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.23
Consensus pattern (41 bp):
CAAAAGGTCAAGCAGTAGCAGTGTTTATGATAAAAACACCG
Found at i:69414487 original size:7 final size:7
Alignment explanation
Indices: 69414475--69414685 Score: 70
Period size: 7 Copynumber: 29.3 Consensus size: 7
69414465 ATAATTTTAT
69414475 TTTAGGG
1 TTTAGGG
*
69414482 TTTAGGT
1 TTTAGGG
* *
69414489 TTTAAGA
1 TTTAGGG
**
69414496 TTTAATG
1 TTTAGGG
*
69414503 TTTAAGG
1 TTTAGGG
*
69414510 TTTAAGG
1 TTTAGGG
* *
69414517 TCTATGG
1 TTTAGGG
**
69414524 TTTATGAT
1 TTTA-GGG
69414532 TTTAGGG
1 TTTAGGG
*
69414539 TTTATGG
1 TTTAGGG
**
69414546 TTTAATG
1 TTTAGGG
**
69414553 TTTAGTA
1 TTTAGGG
*
69414560 TTTTGGG
1 TTTAGGG
69414567 TTTAGGG
1 TTTAGGG
*
69414574 TTTAGTGT
1 TTTAG-GG
*
69414582 TTTAAGG
1 TTTAGGG
**
69414589 TTTAAAG
1 TTTAGGG
69414596 TTTAGGG
1 TTTAGGG
*
69414603 TTTATGG
1 TTTAGGG
69414610 TTT-GAGG
1 TTTAG-GG
*
69414617 TTTAGTG
1 TTTAGGG
*
69414624 TCTT-GTAG
1 T-TTAG-GG
69414632 -TTAGGG
1 TTTAGGG
*
69414638 TCTTAGTG
1 T-TTAGGG
*
69414646 TTTAAGGT
1 TTT-AGGG
69414654 TTTAAGGG
1 TTT-AGGG
69414662 -TTAGGG
1 TTTAGGG
69414668 TGTTAGGG
1 T-TTAGGG
69414676 TTTAAGGG
1 TTT-AGGG
69414684 TT
1 TT
69414686 CGGGATTTTG
Statistics
Matches: 153, Mismatches: 38, Indels: 25
0.71 0.18 0.12
Matches are distributed among these distances:
6 7 0.05
7 105 0.69
8 41 0.27
ACGTcount: A:0.20, C:0.01, G:0.30, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:69414599 original size:29 final size:28
Alignment explanation
Indices: 69414566--69414620 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
69414556 AGTATTTTGG
*
69414566 GTTTAGGGTTTAGTGTTTTAAGGTTTAAA
1 GTTTAGGGTTTA-TGGTTTAAGGTTTAAA
*
69414595 GTTTAGGGTTTATGGTTTGAGGTTTA
1 GTTTAGGGTTTATGGTTTAAGGTTTA
69414621 GTGTCTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (28 bp):
GTTTAGGGTTTATGGTTTAAGGTTTAAA
Found at i:69414612 original size:43 final size:43
Alignment explanation
Indices: 69414496--69414624 Score: 111
Period size: 43 Copynumber: 3.0 Consensus size: 43
69414486 GGTTTTAAGA
* * * * ** *
69414496 TTTAATGTTTAAGGTTTAAGGTCTATGGTTTATGATTTTAG-GG
1 TTTAAGGTTTAAAGTTTAGGGTTTATGGTTTA-GGGTTTAGTGT
* * **
69414539 TTTATGGTTTAATGTTTAGTATTT-TGGGTTTAGGGTTTAGTGT
1 TTTAAGGTTTAAAGTTTAGGGTTTAT-GGTTTAGGGTTTAGTGT
69414582 TTTAAGGTTTAAAGTTTAGGGTTTATGGTTT-GAGGTTTAGTGT
1 TTTAAGGTTTAAAGTTTAGGGTTTATGGTTTAG-GGTTTAGTGT
69414625 CTTGTAGTTA
Statistics
Matches: 68, Mismatches: 14, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
42 8 0.12
43 59 0.87
44 1 0.01
ACGTcount: A:0.20, C:0.01, G:0.28, T:0.51
Consensus pattern (43 bp):
TTTAAGGTTTAAAGTTTAGGGTTTATGGTTTAGGGTTTAGTGT
Found at i:69414636 original size:64 final size:65
Alignment explanation
Indices: 69414532--69414682 Score: 182
Period size: 64 Copynumber: 2.3 Consensus size: 65
69414522 GGTTTATGAT
* * *
69414532 TTTAGGGTTTATGGTTTAATGTTTAGTATTTTGGGTTTAGGGT-TTAGTGTTTTAAGG-TTTAAA
1 TTTAGGGTTTATGGTTTAAGGTTTAGTATCTTGAGTTTAGGGTCTTAGTG-TTTAAGGTTTTAAA
69414595 G
65 G
* * *
69414596 TTTAGGGTTTATGGTTTGAGGTTTAGTGTCTTGTAG-TTAGGGTCTTAGTGTTTAAGGTTTTAAG
1 TTTAGGGTTTATGGTTTAAGGTTTAGTATCTTG-AGTTTAGGGTCTTAGTGTTTAAGGTTTTAAA
69414660 G
65 G
* *
69414661 GTTAGGGTGTTAGGGTTTAAGG
1 TTTAGGGT-TTATGGTTTAAGG
69414683 GTTCGGGATT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
64 43 0.58
65 20 0.27
66 11 0.15
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.48
Consensus pattern (65 bp):
TTTAGGGTTTATGGTTTAAGGTTTAGTATCTTGAGTTTAGGGTCTTAGTGTTTAAGGTTTTAAAG
Found at i:69414820 original size:28 final size:28
Alignment explanation
Indices: 69414789--69414879 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
69414779 ATATATATAT
*
69414789 GGTTTAGTGTTTAGGGTGTATAATTTAG
1 GGTTTAGTGTTTAGGGTCTATAATTTAG
* *
69414817 GGTTTAAG-GTTTAGGGTTTA-AGATTTAT
1 GGTTT-AGTGTTTAGGGTCTATA-ATTTAG
* **
69414845 GGTATA-TGGTTTAGGGTCTATGGTTTAG
1 GGTTTAGT-GTTTAGGGTCTATAATTTAG
69414873 GGTTTAG
1 GGTTTAG
69414880 GGATAAATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
27 2 0.04
28 45 0.92
29 2 0.04
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (28 bp):
GGTTTAGTGTTTAGGGTCTATAATTTAG
Found at i:69414827 original size:7 final size:7
Alignment explanation
Indices: 69414812--69414881 Score: 68
Period size: 7 Copynumber: 10.0 Consensus size: 7
69414802 GGGTGTATAA
69414812 TTTAGGG
1 TTTAGGG
*
69414819 TTTAAGG
1 TTTAGGG
69414826 TTTAGGG
1 TTTAGGG
* *
69414833 TTTAAGA
1 TTTAGGG
*
69414840 TTTATGG
1 TTTAGGG
* *
69414847 TATATGG
1 TTTAGGG
69414854 TTTAGGG
1 TTTAGGG
* *
69414861 TCTATGG
1 TTTAGGG
69414868 TTTAGGG
1 TTTAGGG
69414875 TTTAGGG
1 TTTAGGG
69414882 ATAAATTTTG
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 50 1.00
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:69414829 original size:14 final size:14
Alignment explanation
Indices: 69414812--69414878 Score: 80
Period size: 14 Copynumber: 4.8 Consensus size: 14
69414802 GGGTGTATAA
69414812 TTTAGGGTTTAAGG
1 TTTAGGGTTTAAGG
*
69414826 TTTAGGGTTTAAGA
1 TTTAGGGTTTAAGG
* * *
69414840 TTTATGGTATATGG
1 TTTAGGGTTTAAGG
* *
69414854 TTTAGGGTCTATGG
1 TTTAGGGTTTAAGG
69414868 TTTAGGGTTTA
1 TTTAGGGTTTA
69414879 GGGATAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 45 1.00
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.46
Consensus pattern (14 bp):
TTTAGGGTTTAAGG
Found at i:69414836 original size:21 final size:21
Alignment explanation
Indices: 69414812--69414881 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
69414802 GGGTGTATAA
*
69414812 TTTAGGGTTTAAGGTTTAGGG
1 TTTAGGGTTTATGGTTTAGGG
* * * *
69414833 TTTAAGATTTATGGTATATGG
1 TTTAGGGTTTATGGTTTAGGG
*
69414854 TTTAGGGTCTATGGTTTAGGG
1 TTTAGGGTTTATGGTTTAGGG
69414875 TTTAGGG
1 TTTAGGG
69414882 ATAAATTTTG
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.44
Consensus pattern (21 bp):
TTTAGGGTTTATGGTTTAGGG
Found at i:69415459 original size:125 final size:126
Alignment explanation
Indices: 69415191--69415475 Score: 313
Period size: 125 Copynumber: 2.3 Consensus size: 126
69415181 TGGTGTTGTT
* * * * * * * *
69415191 TCTTTATTAGCATTAGCGGCTCTAGGTGAAAAACTCCGCAATAGATCGAGCATTAGAGGCGCTTG
1 TCTTTAGTGGCATTAGCGGCACTAGGTGAAAAACGCCACAATAGATCGACCATTAGAGGCACTTA
* * *
69415256 GTAAAAAATGCCGGAAAAAAAAACAATTTACTTTAAATAAAACGGCACCATTTTAAGTTGCG
66 CTAAAAAACGCC-GAAAAAAAAACAATTTACTTTAAATAAAACGGCACCATTTTAAGTAGCG
* * * *
69415318 TCTTTAGTGGCTTTAGCGGCACTATGTGAAAAACGCCACAATAGATCGACCATTAGTGTCAC-TA
1 TCTTTAGTGGCATTAGCGGCACTAGGTGAAAAACGCCACAATAGATCGACCATTAGAGGCACTTA
* * * * ** * *
69415382 CTCAAAAAACGCC-ACAAAAAAACATTTTACTTTAATTAAAATGGTGCCGTTTTAGGTAGCG
66 CT-AAAAAACGCCGAAAAAAAAACAATTTACTTTAAATAAAACGGCACCATTTTAAGTAGCG
* *
69415443 TCTTTAGTGGCATTAGCGGCGCTAGGTAAAAAA
1 TCTTTAGTGGCATTAGCGGCACTAGGTGAAAAA
69415476 ACGCTGCAAA
Statistics
Matches: 130, Mismatches: 27, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
125 68 0.52
126 2 0.02
127 60 0.46
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (126 bp):
TCTTTAGTGGCATTAGCGGCACTAGGTGAAAAACGCCACAATAGATCGACCATTAGAGGCACTTA
CTAAAAAACGCCGAAAAAAAAACAATTTACTTTAAATAAAACGGCACCATTTTAAGTAGCG
Found at i:69415748 original size:18 final size:18
Alignment explanation
Indices: 69415697--69415748 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
69415687 TTCCCCCAAC
*
69415697 AAATTTTCCCCAATTCCTT
1 AAATTTTCCCCAA-TCCCT
69415716 AAA-TTTCCCCTAATCCCT
1 AAATTTTCCCC-AATCCCT
69415734 AAATTTTCCCCAATC
1 AAATTTTCCCCAATC
69415749 AAAATCCCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 18 0.60
19 12 0.40
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATTTTCCCCAATCCCT
Found at i:69417904 original size:9 final size:9
Alignment explanation
Indices: 69417892--69417977 Score: 75
Period size: 9 Copynumber: 9.6 Consensus size: 9
69417882 TATATAATAT
69417892 CATAACTTA
1 CATAACTTA
* *
69417901 CATACCTCA
1 CATAACTTA
*
69417910 CATAACGTA
1 CATAACTTA
69417919 CATAACTTA
1 CATAACTTA
69417928 CATAACTTA
1 CATAACTTA
* *
69417937 TATAA-ATA
1 CATAACTTA
* * *
69417945 TATATCATA
1 CATAACTTA
69417954 TCATAACTTA
1 -CATAACTTA
69417964 CATAACTTA
1 CATAACTTA
*
69417973 GATAA
1 CATAA
69417978 TACATAAATA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
8 6 0.10
9 50 0.81
10 6 0.10
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:69417999 original size:43 final size:44
Alignment explanation
Indices: 69417910--69418021 Score: 154
Period size: 43 Copynumber: 2.5 Consensus size: 44
69417900 ACATACCTCA
* *
69417910 CATAACGTACATAACTTACATAACTTATATAAATATATATCATAT
1 CATAACTTACATAACTTACATAAC-TACATAAATATATATCATAT
*
69417955 CATAACTTACATAACTTAGATAA-TACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAACTACATAAATATATATCATAT
* **
69417998 CATAAATGCCATAACTTACATAAC
1 CATAACTTACATAACTTACATAAC
69418022 ATAGGCTTAG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
43 38 0.64
45 21 0.36
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (44 bp):
CATAACTTACATAACTTACATAACTACATAAATATATATCATAT
Found at i:69418106 original size:21 final size:21
Alignment explanation
Indices: 69418080--69418135 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
69418070 AACAGCGGTG
*
69418080 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
69418101 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
69418122 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
69418136 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:69419764 original size:84 final size:84
Alignment explanation
Indices: 69419623--69419788 Score: 332
Period size: 84 Copynumber: 2.0 Consensus size: 84
69419613 CATTTGAATT
69419623 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
1 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
69419688 GCTTTAAGCCATAATTTAA
66 GCTTTAAGCCATAATTTAA
69419707 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
1 TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
69419772 GCTTTAAGCCATAATTT
66 GCTTTAAGCCATAATTT
69419789 GTTTGCAAAT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (84 bp):
TGATTCTCTATTTCCAAGAATGTACAATGATAATGCTAATTTCTCCATCACCGATACTTTCCCAT
GCTTTAAGCCATAATTTAA
Found at i:69421759 original size:9 final size:9
Alignment explanation
Indices: 69421742--69421786 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
69421732 GAAAGGAGCT
*
69421742 CTTATATAA
1 CTTACATAA
69421751 CTTACATAA
1 CTTACATAA
69421760 CTTACATAA
1 CTTACATAA
*
69421769 TTTACATAA
1 CTTACATAA
*
69421778 CTAACATAA
1 CTTACATAA
69421787 ATAAATATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.36
Consensus pattern (9 bp):
CTTACATAA
Found at i:69422538 original size:43 final size:42
Alignment explanation
Indices: 69422391--69422617 Score: 138
Period size: 43 Copynumber: 5.3 Consensus size: 42
69422381 CATTTTCAGA
* ** *
69422391 AAAAGCGCCGCTAAAGCTCACATTCTATAGTGACATTTGAAGT
1 AAAAGC-CCGCTAAAGGTCACATTCTATAGTGACATTTGTGGG
* ** * * * *
69422434 AAAGGCACCGCTAAAGGTCATGTTCAATAG-CAGCGTTTATGGGG
1 AAAAGC-CCGCTAAAGGTCACATTCTATAGTGA-CATTTGT-GGG
* * *
69422478 AAATG-CCGCTAAAGGTCATATTCTACAGTGACATTTGTGGG
1 AAAAGCCCGCTAAAGGTCACATTCTATAGTGACATTTGTGGG
* *
69422519 AAAAGCCCCGCTAAAGGTCACATTTTATAGCGA-ATTTTGTGGG
1 AAAAG-CCCGCTAAAGGTCACATTCTATAGTGACA-TTTGTGGG
* * * * * *
69422562 AAAGGCGCTGCTATAA-GTCACGTTCTATAGTGGCGTTTGTGTG
1 AAAAGC-CCGCTA-AAGGTCACATTCTATAGTGACATTTGTGGG
*
69422605 AAAAACGCCGCTA
1 AAAAGC-CCGCTA
69422618 CAAGTCATTT
Statistics
Matches: 140, Mismatches: 35, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
41 7 0.05
42 28 0.20
43 98 0.70
44 7 0.05
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (42 bp):
AAAAGCCCGCTAAAGGTCACATTCTATAGTGACATTTGTGGG
Found at i:69425237 original size:13 final size:13
Alignment explanation
Indices: 69425219--69425267 Score: 89
Period size: 13 Copynumber: 3.8 Consensus size: 13
69425209 GTGTAGGCTT
69425219 CACACGCCCAGGG
1 CACACGCCCAGGG
69425232 CACACGCCCAGGG
1 CACACGCCCAGGG
*
69425245 CACATGCCCAGGG
1 CACACGCCCAGGG
69425258 CACACGCCCA
1 CACACGCCCA
69425268 TGCCTAAGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.24, C:0.47, G:0.27, T:0.02
Consensus pattern (13 bp):
CACACGCCCAGGG
Found at i:69425909 original size:32 final size:32
Alignment explanation
Indices: 69425873--69425969 Score: 194
Period size: 32 Copynumber: 3.0 Consensus size: 32
69425863 TGTATGCATT
69425873 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
69425905 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
69425937 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
69425969 T
1 T
69425970 GGTAAGCATT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 65 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:69427480 original size:26 final size:26
Alignment explanation
Indices: 69427451--69427505 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
69427441 TTTACAGTTT
69427451 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
69427477 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
69427503 TAC
1 TAC
69427506 ATGTTTGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.24
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:69432875 original size:32 final size:32
Alignment explanation
Indices: 69432839--69432899 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
69432829 TGCATTTTAG
*
69432839 CATTTTAATAGTTAATGGATGATGTGCATTAT
1 CATTTTAATAGTTAATGGATGATGGGCATTAT
69432871 CATTTTAATAGTTAATGGATGATGGGCAT
1 CATTTTAATAGTTAATGGATGATGGGCAT
69432900 GGTAAGTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (32 bp):
CATTTTAATAGTTAATGGATGATGGGCATTAT
Found at i:69434401 original size:25 final size:26
Alignment explanation
Indices: 69434373--69434424 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
69434363 TTTACAGTTT
69434373 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
69434398 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
69434424 T
1 T
69434425 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:69436251 original size:42 final size:42
Alignment explanation
Indices: 69436199--69436296 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
69436189 ATAGCTCGAC
*
69436199 TATGGTCTTACACAAAATTTCAT-ATCAGTGCCATATCCCAGA
1 TATGGTCTTACACAAAATCTCATAATCA-TGCCATATCCCAGA
** * *
69436241 TATGGTCTTACATGAAATCTCATAATGATGTCATATCCCAGA
1 TATGGTCTTACACAAAATCTCATAATCATGCCATATCCCAGA
69436283 TATGGTCTTACACA
1 TATGGTCTTACACA
69436297 TAGTCTCGGT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 45 0.94
43 3 0.06
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTCATAATCATGCCATATCCCAGA
Found at i:69443727 original size:42 final size:42
Alignment explanation
Indices: 69443674--69443771 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 42
69443664 ATAGCCCGGC
* * *
69443674 TATGGTTTTACACAAAAT-TTCAT-ATCGGTGCCATATCCCAGA
1 TATGGTCTTACACAAAATCTT-ATAAT-GATGCCATATCCCAAA
** *
69443716 TATGGTCTTACATGAAATCTTATAATGATGTCATATCCCAAA
1 TATGGTCTTACACAAAATCTTATAATGATGCCATATCCCAAA
69443758 TATGGTCTTACACA
1 TATGGTCTTACACA
69443772 TAGTCTCGGT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
42 42 0.91
43 4 0.09
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTTATAATGATGCCATATCCCAAA
Found at i:69445375 original size:78 final size:78
Alignment explanation
Indices: 69445246--69445482 Score: 368
Period size: 78 Copynumber: 3.0 Consensus size: 78
69445236 GTGAGCGGTC
* * * **
69445246 TTATTGCAAATGATGGGAGTTTGGTTCGAGATAATGAGGGGCTATTTGATGTTGTAAATGATTAT
1 TTATTACAAATGATGGGAGTTTGGTTTGAGATAGTGAGGGGCTATTTGATGTTACAAATGATTAT
69445311 TTTATGGATTTGT
66 TTTATGGATTTGT
69445324 TTATT-CAAGATGATGGGAGTTTGGTTTGAGATAGTGAGGGGCTATTTGATGTTACAAATGATTA
1 TTATTACAA-ATGATGGGAGTTTGGTTTGAGATAGTGAGGGGCTATTTGATGTTACAAATGATTA
* ** *
69445388 ATTTATTAATTTAT
65 TTTTATGGATTTGT
*
69445402 TTATTACAAATAATGGGAGTTTGGTTTGAGATAGTGAGGGGCTATTTGATGTTACAAATGATTAT
1 TTATTACAAATGATGGGAGTTTGGTTTGAGATAGTGAGGGGCTATTTGATGTTACAAATGATTAT
69445467 TTTATGGATTTGT
66 TTTATGGATTTGT
69445480 TTA
1 TTA
69445483 CTTCACAAGG
Statistics
Matches: 144, Mismatches: 13, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
77 3 0.02
78 138 0.96
79 3 0.02
ACGTcount: A:0.28, C:0.04, G:0.26, T:0.43
Consensus pattern (78 bp):
TTATTACAAATGATGGGAGTTTGGTTTGAGATAGTGAGGGGCTATTTGATGTTACAAATGATTAT
TTTATGGATTTGT
Found at i:69448744 original size:44 final size:47
Alignment explanation
Indices: 69448687--69448808 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 47
69448677 CGCGTGCTGG
* *
69448687 TGCATGTCTCAGACATGTCTTACACTAGCACAACTCT-T-A-GTCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTCAGGCCGA
* * *
69448731 TGCATGTCCCAGACACGTCTTACACTAGC-TATCTCTGTCGAGGCCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTC-AGGCCGA
*
69448778 TGCATGTCCCAGACATGTCTTACACTGGCAC
1 TGCATGTCCCAGACATGTCTTACACTAGCAC
69448809 TCATTTCTGT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
43 5 0.08
44 28 0.43
46 1 0.02
47 31 0.48
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
TGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTCAGGCCGA
Found at i:69448789 original size:47 final size:44
Alignment explanation
Indices: 69448687--69448849 Score: 150
Period size: 47 Copynumber: 3.5 Consensus size: 44
69448677 CGCGTGCTGG
* *
69448687 TGCATGTCTCAGACATGTCTTACACTAGCACAACTCTTAGTCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGA
* * *
69448731 TGCATGTCCCAGACACGTCTTACACTAGC-TATCTCTGTCGAGGCCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T--A-GCCGA
* **
69448778 TGCATGTCCCAGACATGTCTTACACTGGCACTCATTTCTGT-GCCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCA--CAACTCT-TAGCCGA
*
69448824 TGCTATGTCCTAGACATGGTCTTACA
1 TGC-ATGTCCCAGACAT-GTCTTACA
69448850 TTGGCTATCA
Statistics
Matches: 100, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
43 5 0.05
44 28 0.28
46 9 0.09
47 43 0.43
48 8 0.08
50 7 0.07
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (44 bp):
TGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGA
Found at i:69448880 original size:94 final size:93
Alignment explanation
Indices: 69448635--69448994 Score: 297
Period size: 94 Copynumber: 3.8 Consensus size: 93
69448625 ATATCTTGCT
* * ** * ** *
69448635 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATACGCGTGCTGGTGCATGTCTCAGA
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTAT--CATA-ATGAGCTGAAGCATGTCCCAGA
** * *
69448700 CATGTCTTACACTAGCACAACTCT--TAGTC
63 CATGTCTTACACTAGCACTCCTCTGGAAGCC
* * * ** * *
69448729 GATG-CATGTCCCAGACA-CGTCTTACACTAGCTATC-TCTGTCGAGGCCGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTATCAT-AAT-GA-GCTGAAGCATGTCCCAGA
* * *
69448791 CATGTCTTACACTGGCACTCATTTCT-G-TGCC
63 CATGTCTTACACTAGCACTC--CTCTGGAAGCC
* * *
69448822 GATGCTATGTCCTAGACATGGTCTTACATTGGCTATCATAGCATG-GCT-AACGTATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATA--ATGAGCTGAA-GCATGTCCCAGA
* *
69448885 CATTTCTTACACTAGCCCTCCTCTGGAAGCC
63 CATGTCTTACACTAGCACTCCTCTGGAAGCC
*
69448916 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTAGCTGAAGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATAATG-AGCTGAAGCATGTCCCAGACA
69448981 TGTCTTACACTAGC
65 TGTCTTACACTAGC
69448995 GCACAAATCA
Statistics
Matches: 214, Mismatches: 35, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
89 2 0.01
90 2 0.01
91 32 0.15
92 20 0.09
93 24 0.11
94 114 0.53
95 17 0.08
96 2 0.01
97 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATAATGAGCTGAAGCATGTCCCAGACAT
GTCTTACACTAGCACTCCTCTGGAAGCC
Found at i:69448972 original size:47 final size:45
Alignment explanation
Indices: 69448773--69448991 Score: 147
Period size: 47 Copynumber: 4.7 Consensus size: 45
69448763 CTCTGTCGAG
* * **
69448773 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATTTCTGT
1 GCCGAAGCATGTCCCAGACATGTCTTACACTGGCTCTCA-TAATGT
* * * *
69448819 GCCGATGCTATGTCCTAGACATGGTCTTACATTGGCTATCATAGCATG-
1 GCCGAAGC-ATGTCCCAGACAT-GTCTTACACTGGCTCTCATA--ATGT
* * * * * * * *
69448867 G-CTAACGTATGTCCCAGACATTTCTTACACTAGCCCTCCT-CTGGAA
1 GCCGAA-GCATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-G-T
* *
69448913 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGT
1 GCCGAAG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGT
*
69448960 AGCTGAAGCATGTCCCAGACATGTCTTACACT
1 -GCCGAAGCATGTCCCAGACATGTCTTACACT
69448992 AGCGCACAAA
Statistics
Matches: 130, Mismatches: 30, Indels: 26
0.70 0.16 0.14
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
46 32 0.25
47 56 0.43
48 37 0.28
49 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
GCCGAAGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGT
Found at i:69453159 original size:13 final size:13
Alignment explanation
Indices: 69453143--69453175 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
69453133 TTTAATTAAA
*
69453143 TTAGTTAATTAGT
1 TTAGATAATTAGT
69453156 TTAGATAATTAGT
1 TTAGATAATTAGT
69453169 TTA-ATAA
1 TTAGATAA
69453176 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:69457930 original size:94 final size:94
Alignment explanation
Indices: 69457681--69458040 Score: 362
Period size: 94 Copynumber: 3.8 Consensus size: 94
69457671 ATATATTGCT
* * * *
69457681 GATGCCATGTCCCATACATGGTCTTACACTGGCTCTCATATACGCGT-ACTGATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATC--ATA-GCATGGCTGATGCATGTCCCAG
*
69457745 ACATGTCTTACACTAGCA--CAACTCT-TAGCC
63 ACATGTCTTACACTAGCACTCATCTCTGT-GCC
* * * * *
69457775 AATG-CGTGTCCCAGACA-CGTCTTATACTGGCTATC-TCTGTCGA-GGCTGATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AG-C-ATGGCTGATGCATGTCCCAG
*
69457836 ACATGTCTTACACTGGCACTCATCTCTGTGCC
63 ACATGTCTTACACTAGCACTCATCTCTGTGCC
*
69457868 GATGCCATGTCCCAGACATGGTCTTAAACTGGCTATCATAGCATGGCTGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGCATGGCTGATGCATGTCCCAGACA
* * *
69457933 TGTCTTACACTAGCCCTCGTCT-AGATGCC
66 TGTCTTACACTAGCACTCATCTCTG-TGCC
* * *** * * *
69457962 GATGCCATGTCCTAGACATGGTTTTACACTGGCT-TGCATAATGTGGCCGAAGCATGTCCCAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-CATAGCATGGCTGATGCATGTCCCAGAC
69458026 ATGTCTTACACTAGC
65 ATGTCTTACACTAGC
69458041 GCACAAATCA
Statistics
Matches: 224, Mismatches: 29, Indels: 26
0.80 0.10 0.09
Matches are distributed among these distances:
89 2 0.01
90 1 0.00
91 33 0.15
92 15 0.07
93 26 0.12
94 129 0.58
95 17 0.08
96 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGCATGGCTGATGCATGTCCCAGACA
TGTCTTACACTAGCACTCATCTCTGTGCC
Found at i:69457971 original size:47 final size:46
Alignment explanation
Indices: 69457681--69457992 Score: 178
Period size: 47 Copynumber: 6.7 Consensus size: 46
69457671 ATATATTGCT
* * * * * *
69457681 GATGCCATGTCCCATACATGGTCTTACACTGGCTCTCATATACGCGTACT
1 GATG-CATGTCCCAGACATGGTCTTACACT-GCACTCATCTA-G-ATGCC
* *
69457731 GATGCATGTCCCAGACAT-GTCTTACACTAGCAC-AACTCT-TA-GCC
1 GATGCATGTCCCAGACATGGTCTTACACT-GCACTCA-TCTAGATGCC
* * * * * * * *
69457775 AATGCGTGTCCCAGACA-CGTCTTATACTGGCTATCTC-TGTCGAGGCT
1 GATGCATGTCCCAGACATGGTCTTACACT-GC-A-CTCATCTAGATGCC
*
69457822 GATGCATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTG-TGCC
1 GATGCATGTCCCAGACATGGTCTTACACT-GCACTCATCT-AGATGCC
* * *
69457868 GATGCCATGTCCCAGACATGGTCTTAAACTG-GCT-ATCATAGCATGGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTGCACTCATC-TAG-AT-GCC
* *
69457916 GATGCATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTAGATGCC
1 GATGCATGTCCCAGACATGGTCTTACACT-GCACTCATCTAGATGCC
* *
69457962 GATGCCATGTCCTAGACATGGTTTTACACTG
1 GATG-CATGTCCCAGACATGGTCTTACACTG
69457993 GCTTGCATAA
Statistics
Matches: 207, Mismatches: 34, Indels: 45
0.72 0.12 0.16
Matches are distributed among these distances:
44 27 0.13
45 10 0.05
46 29 0.14
47 78 0.38
48 44 0.21
49 15 0.07
50 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGGTCTTACACTGCACTCATCTAGATGCC
Found at i:69464387 original size:9 final size:9
Alignment explanation
Indices: 69464349--69464388 Score: 50
Period size: 8 Copynumber: 4.8 Consensus size: 9
69464339 AATGAAATTT
69464349 TAAAATTAA
1 TAAAATTAA
69464358 -AAAATTAA
1 TAAAATTAA
69464366 -AAAA-TAA
1 TAAAATTAA
69464373 TAAAATTAA
1 TAAAATTAA
*
69464382 TTAAATT
1 TAAAATT
69464389 CACAAGAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 3 0.11
8 16 0.57
9 9 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAAATTAA
Found at i:69464834 original size:27 final size:27
Alignment explanation
Indices: 69464804--69464876 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
69464794 ACCAATAACC
* *
69464804 CCTATCTGATAGGTGGCACTGGTGATG
1 CCTATTTGATAGGCGGCACTGGTGATG
* * *
69464831 CCTATTTGATAGGCGTCATTGGTGGTG
1 CCTATTTGATAGGCGGCACTGGTGATG
69464858 CCTATTTGATAGGCGGCAC
1 CCTATTTGATAGGCGGCAC
69464877 ACCTAGCATA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.32
Consensus pattern (27 bp):
CCTATTTGATAGGCGGCACTGGTGATG
Found at i:69467719 original size:46 final size:46
Alignment explanation
Indices: 69467666--69467802 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
69467656 TATATATACA
* * * *
69467666 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
69467712 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
69467758 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
69467803 ATACACTTCC
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:69467847 original size:47 final size:47
Alignment explanation
Indices: 69467776--69468153 Score: 580
Period size: 47 Copynumber: 8.1 Consensus size: 47
69467766 ACACATTTCG
* * * * * *
69467776 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
69467823 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
69467870 CATTGGCCATTCGGCCTTATCATATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
69467917 CATTGGCCATTCGACCTTATCACACATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
69467964 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
69468011 CATTGGCCATTCGGTCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
69468058 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * **
69468105 CATT-GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
69468151 CAT
1 CAT
69468154 AAAATCCTAA
Statistics
Matches: 308, Mismatches: 22, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
46 43 0.14
47 265 0.86
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:69467938 original size:22 final size:22
Alignment explanation
Indices: 69467819--69467940 Score: 56
Period size: 22 Copynumber: 5.3 Consensus size: 22
69467809 TTCCACGTTC
69467819 ATCACATTGGCCATTCTG-CCTT
1 ATCACATTGGCCATTC-GACCTT
* *
69467841 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
69467865 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
* * *
69467888 ATCATATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
69467912 CATCACATTGGCCATTCGACCTT
1 -ATCACATTGGCCATTCGACCTT
69467935 ATCACA
1 ATCACA
69467941 CATATACATG
Statistics
Matches: 73, Mismatches: 12, Indels: 30
0.63 0.10 0.26
Matches are distributed among these distances:
22 25 0.34
23 15 0.21
24 14 0.19
25 19 0.26
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:69472331 original size:62 final size:62
Alignment explanation
Indices: 69472254--69472537 Score: 498
Period size: 62 Copynumber: 4.6 Consensus size: 62
69472244 CAATGTACCT
*
69472254 AATTTATATTACAAAGTTTGTTCTAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
*
69472316 AATTTATGTTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
* *
69472378 AATTTATATTACAAATTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAAGAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
*
69472440 AATTTATATTACAAAGTTTGTTCCAATTTTT-ATGTTGTAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
* *
69472501 AATTTATATTACAAAGTTTGTTCCAAGTTTTAGTGTT
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTT
69472538 TTAACGTTGT
Statistics
Matches: 211, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
61 58 0.27
62 153 0.73
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (62 bp):
AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
Found at i:69472506 original size:14 final size:14
Alignment explanation
Indices: 69472487--69472515 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
69472477 TAATGTATTT
69472487 AATTTATATTACAA
1 AATTTATATTACAA
69472501 AATTTATATTACAA
1 AATTTATATTACAA
69472515 A
1 A
69472516 GTTTGTTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:69473681 original size:14 final size:14
Alignment explanation
Indices: 69473662--69473695 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
69473652 AAATTACATG
*
69473662 TTAGAATAGTATCA
1 TTAGAATAGCATCA
69473676 TTAGAATAGCATCA
1 TTAGAATAGCATCA
*
69473690 CTAGAA
1 TTAGAA
69473696 AAAAAATGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (14 bp):
TTAGAATAGCATCA
Found at i:69475204 original size:27 final size:27
Alignment explanation
Indices: 69475174--69475227 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
69475164 CTAATTTATC
*
69475174 TCATAAATTCCA-ACTTAATGGTCTCAT
1 TCATAAATTCCATA-TCAATGGTCTCAT
69475201 TCATAAATTCCATATCAATGGTCTCAT
1 TCATAAATTCCATATCAATGGTCTCAT
69475228 CTTTTACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.37
Consensus pattern (27 bp):
TCATAAATTCCATATCAATGGTCTCAT
Found at i:69475725 original size:3 final size:3
Alignment explanation
Indices: 69475717--69475760 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
69475707 CTTCCCTCTC
* * * *
69475717 CTT CTT CTT CTC CTT CTC CTT CTC CTT CTC CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
69475761 CTTATTTTCT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (3 bp):
CTT
Found at i:69475760 original size:6 final size:6
Alignment explanation
Indices: 69475701--69475757 Score: 75
Period size: 6 Copynumber: 10.0 Consensus size: 6
69475691 TTTCTTTTTC
*
69475701 CCTTC- CCTTC- CC-TCT CCTTCT TCTTCT CCTTCT CCTTCT CCTTCT
1 CCTTCT CCTTCT CCTTCT CCTTCT CCTTCT CCTTCT CCTTCT CCTTCT
*
69475746 CCTTCT TCTTCT
1 CCTTCT CCTTCT
69475758 TCTCTTATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
4 2 0.04
5 9 0.19
6 36 0.77
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (6 bp):
CCTTCT
Found at i:69478456 original size:14 final size:14
Alignment explanation
Indices: 69478420--69478456 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
69478410 TGTTACCATT
*
69478420 TTACTATTATATTG
1 TTACTATTTTATTG
69478434 TTACTATTTTATTG
1 TTACTATTTTATTG
*
69478448 TTATTATTT
1 TTACTATTT
69478457 AGATATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.65
Consensus pattern (14 bp):
TTACTATTTTATTG
Found at i:69486627 original size:20 final size:21
Alignment explanation
Indices: 69486598--69486641 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
69486588 GCATTGTTAC
*
69486598 AATATTAAATAG-ATAAAAAA
1 AATATAAAATAGTATAAAAAA
*
69486618 AATATAAAATAGTATAAAATA
1 AATATAAAATAGTATAAAAAA
69486639 AAT
1 AAT
69486642 TTATTTTAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (21 bp):
AATATAAAATAGTATAAAAAA
Found at i:69496794 original size:26 final size:26
Alignment explanation
Indices: 69496763--69496870 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
69496753 TGAAATGCCC
*
69496763 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
69496789 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
69496815 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
69496841 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69496867 ATCA
1 ATCA
69496871 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:69503803 original size:26 final size:26
Alignment explanation
Indices: 69503771--69503878 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
69503761 TGAAATGCCC
*
69503771 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
69503797 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
69503823 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
69503849 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69503875 ATCA
1 ATCA
69503879 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:69511698 original size:97 final size:97
Alignment explanation
Indices: 69511579--69511775 Score: 376
Period size: 97 Copynumber: 2.0 Consensus size: 97
69511569 ATGATGTAAG
* *
69511579 TTTAGTGGTGGAATGAATTATAATCATGAGACTATGGTAAATTTACATTCAATTATGTTATAATA
1 TTTAGTGATGGAATGAATTATAATCATGAGACTATAGTAAATTTACATTCAATTATGTTATAATA
69511644 TATAGATGTTATATGCATGGTAAGGTTGCTCA
66 TATAGATGTTATATGCATGGTAAGGTTGCTCA
69511676 TTTAGTGATGGAATGAATTATAATCATGAGACTATAGTAAATTTACATTCAATTATGTTATAATA
1 TTTAGTGATGGAATGAATTATAATCATGAGACTATAGTAAATTTACATTCAATTATGTTATAATA
69511741 TATAGATGTTATATGCATGGTAAGGTTGCTCA
66 TATAGATGTTATATGCATGGTAAGGTTGCTCA
69511773 TTT
1 TTT
69511776 CTTGCATACA
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (97 bp):
TTTAGTGATGGAATGAATTATAATCATGAGACTATAGTAAATTTACATTCAATTATGTTATAATA
TATAGATGTTATATGCATGGTAAGGTTGCTCA
Found at i:69523431 original size:20 final size:20
Alignment explanation
Indices: 69523403--69523445 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
69523393 TTAAACTCGT
*
69523403 TTTATTTTTATTT-TATTTTA
1 TTTACTTTTATTTCTA-TTTA
69523423 TTTACTTTTATTTCTATTTA
1 TTTACTTTTATTTCTATTTA
69523443 TTT
1 TTT
69523446 TTGAAGACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTACTTTTATTTCTATTTA
Found at i:69529030 original size:32 final size:32
Alignment explanation
Indices: 69528991--69529150 Score: 257
Period size: 32 Copynumber: 5.0 Consensus size: 32
69528981 CATAAAAAAT
*
69528991 ATCATACATTAGGTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
*
69529023 ATCATACATTAGTTTTGCATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
69529055 ATCATACATTAGGTTCACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* * *
69529087 ATCATACATTAGTTTTGCATTTGAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
69529119 ATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
69529151 CATAGTTATA
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 115 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.33
Consensus pattern (32 bp):
ATCATACATTAGTTTTACATATAAAAAAGTAG
Found at i:69529062 original size:64 final size:64
Alignment explanation
Indices: 69528991--69529150 Score: 284
Period size: 64 Copynumber: 2.5 Consensus size: 64
69528981 CATAAAAAAT
69528991 ATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAG
* * *
69529055 ATCATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTGCATTTGAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAG
*
69529119 ATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGGTTTACATATAAAAAAGTAG
69529151 CATAGTTATA
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 91 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.33
Consensus pattern (64 bp):
ATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAG
Found at i:69533642 original size:19 final size:19
Alignment explanation
Indices: 69533618--69533656 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
69533608 TCATTTACAT
69533618 ACATTTGGGTGCCTACCAA
1 ACATTTGGGTGCCTACCAA
69533637 ACATTTGGGTGCCTACCAA
1 ACATTTGGGTGCCTACCAA
69533656 A
1 A
69533657 GGTTGAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (19 bp):
ACATTTGGGTGCCTACCAA
Found at i:69533747 original size:25 final size:25
Alignment explanation
Indices: 69533719--69533773 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
69533709 TACAAACTAT
69533719 GAATATGGTAGCAAGAAGAAACAGA
1 GAATATGGTAGCAAGAAGAAACAGA
69533744 GAATATGGTAGCAAGAAGAAACAGA
1 GAATATGGTAGCAAGAAGAAACAGA
69533769 GAATA
1 GAATA
69533774 GGGAATGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.53, C:0.07, G:0.27, T:0.13
Consensus pattern (25 bp):
GAATATGGTAGCAAGAAGAAACAGA
Found at i:69536834 original size:29 final size:30
Alignment explanation
Indices: 69536801--69536872 Score: 71
Period size: 31 Copynumber: 2.4 Consensus size: 30
69536791 TTGGTAATAT
*
69536801 TTTATAATTATTTAATTAGATA-ATTATTA
1 TTTATAATTATTTAATAAGATATATTATTA
*
69536830 TTTATTTAA-TATTTTAATAAGATATTTTATTA
1 TTTA--TAATTA-TTTAATAAGATATATTATTA
69536862 TTT-T-ATTATTT
1 TTTATAATTATTT
69536873 TATTTAGTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
28 4 0.11
29 7 0.19
30 2 0.06
31 14 0.39
32 9 0.25
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTATAATTATTTAATAAGATATATTATTA
Found at i:69536863 original size:8 final size:8
Alignment explanation
Indices: 69536852--69536876 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
69536842 TTTAATAAGA
69536852 TATTTTAT
1 TATTTTAT
69536860 TATTTTAT
1 TATTTTAT
69536868 TATTTTAT
1 TATTTTAT
69536876 T
1 T
69536877 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:69539376 original size:27 final size:26
Alignment explanation
Indices: 69539302--69539577 Score: 140
Period size: 27 Copynumber: 10.2 Consensus size: 26
69539292 CAAAACAGTC
* * * * *
69539302 ATTTTACCCTACAGGGGTATGTCGGTC
1 ATTTTA-CATACAAGGGTATTTCGATA
* *
69539329 ATTTTACACTACAAAGGTATTTTGATA
1 ATTTTACA-TACAAGGGTATTTCGATA
69539356 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACA-TACAAGGGTATTTCGATA
* * ** * * *
69539383 ATTTTGCAAATCGGGGGTGTTTTGGTA
1 ATTTTACATA-CAAGGGTATTTCGATA
* *
69539410 ATTTTACAAATCGAGGGTATTTCGATA
1 ATTTTACATA-CAAGGGTATTTCGATA
* *
69539437 ATTTTACAAATAGAGGGTATTTCGATA
1 ATTTTACATACA-AGGGTATTTCGATA
* * * *
69539464 ATTTTACAAATCAAGGATGTTTTGATA
1 ATTTTACATA-CAAGGGTATTTCGATA
* * *
69539491 ATTTTATAAATTAAGGGTATTTC-AGTA
1 ATTTTACATA-CAAGGGTATTTCGA-TA
* * * **
69539518 ATTTTACAAATAGGGGGTGCTTCGATA
1 ATTTTACATACA-AGGGTATTTCGATA
* * * *
69539545 ATTTTACAAACTAGGGGTACTTCGGTA
1 ATTTTACATAC-AAGGGTATTTCGATA
69539572 ATTTTA
1 ATTTTA
69539578 TAAATCGGGG
Statistics
Matches: 202, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.02
27 194 0.96
28 3 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (26 bp):
ATTTTACATACAAGGGTATTTCGATA
Found at i:69539429 original size:81 final size:81
Alignment explanation
Indices: 69539344--69539602 Score: 290
Period size: 81 Copynumber: 3.2 Consensus size: 81
69539334 ACACTACAAA
* * * *
69539344 GGTATTTTGATAATTTTAC-ACTACAAGGGTATTTCGATAATTTTGCAAATCGGGGGTGTTTTGG
1 GGTATTTTGATAATTTTACAAATA-GAGGGTATTTCGATAATTTTACAAATCAGGGGTGTTTTGG
*
69539408 TAATTTTACAAATCGAG
65 TAATTTTATAAATCGAG
* * * *
69539425 GGTATTTCGATAATTTTACAAATAGAGGGTATTTCGATAATTTTACAAATCAAGGATGTTTTGAT
1 GGTATTTTGATAATTTTACAAATAGAGGGTATTTCGATAATTTTACAAATCAGGGGTGTTTTGGT
**
69539490 AATTTTATAAATTAAG
66 AATTTTATAAATCGAG
* * ** ** *
69539506 GGTA-TTTCAGTAATTTTACAAATAGGGGGTGCTTCGATAATTTTACAAA-CTAGGGGTACTTCG
1 GGTATTTTGA-TAATTTTACAAATAGAGGGTATTTCGATAATTTTACAAATC-AGGGGTGTTTTG
*
69539569 GTAATTTTATAAATCGGG
64 GTAATTTTATAAATCGAG
*
69539587 GGTATTTTGGTAATTT
1 GGTATTTTGATAATTT
69539603 CTCTTTATTA
Statistics
Matches: 147, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
80 4 0.03
81 137 0.93
82 6 0.04
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
GGTATTTTGATAATTTTACAAATAGAGGGTATTTCGATAATTTTACAAATCAGGGGTGTTTTGGT
AATTTTATAAATCGAG
Found at i:69539588 original size:27 final size:27
Alignment explanation
Indices: 69539344--69539602 Score: 227
Period size: 27 Copynumber: 9.6 Consensus size: 27
69539334 ACACTACAAA
* * *
69539344 GGTATTTTGATAATTTTAC-ACTACAAG
1 GGTATTTCGATAATTTTACAAAT-CGAG
* *
69539371 GGTATTTCGATAATTTTGCAAATCGGG
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
69539398 GGTGTTTTGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
*
69539425 GGTATTTCGATAATTTTACAAATAGAG
1 GGTATTTCGATAATTTTACAAATCGAG
*
69539452 GGTATTTCGATAATTTTACAAATCAAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * * * **
69539479 GATGTTTTGATAATTTTATAAATTAAG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
69539506 GGTATTTC-AGTAATTTTACAAATAGGG
1 GGTATTTCGA-TAATTTTACAAATCGAG
** *
69539533 GGTGCTTCGATAATTTTACAAA-CTAGG
1 GGTATTTCGATAATTTTACAAATCGA-G
* * * *
69539560 GGTACTTCGGTAATTTTATAAATCGGG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
69539587 GGTATTTTGGTAATTT
1 GGTATTTCGATAATTT
69539603 CTCTTTATTA
Statistics
Matches: 187, Mismatches: 40, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
26 1 0.01
27 182 0.97
28 4 0.02
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATCGAG
Found at i:69539955 original size:28 final size:28
Alignment explanation
Indices: 69539919--69540010 Score: 121
Period size: 28 Copynumber: 3.3 Consensus size: 28
69539909 TGGCCTTTTT
* * *
69539919 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
69539947 AGGCCCAATCACATTCATATAGCCCAAC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
69539975 CGGCCCAACCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
69540003 AGGCCCAA
1 AGGCCCAA
69540011 CTACTTTCCA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.28, C:0.39, G:0.15, T:0.17
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:69542180 original size:47 final size:47
Alignment explanation
Indices: 69542123--69542284 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 47
69542113 TGTAAGACCC
*
69542123 TGTCCTAGACACGGTCTTACACTGGCTCAT-ATCTC-AAGTCGATGCCA
1 TGTCCCAGACA-GGTCTTACACTGGCTCATCATCTCGAAGTCGATG-CA
* **
69542170 TGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTCGTCGATGCA
1 TGTCCCAGACA-GGTCTTACACTGGCTCATCATCTCGAAGTCGATGCA
* * * * * *
69542217 TGTCCAAGACATGTCTTACACTGGCTTA-CGTCTCGAGGCCGATGCA
1 TGTCCCAGACAGGTCTTACACTGGCTCATCATCTCGAAGTCGATGCA
**
69542263 TGTCCCAGACATATCTTACACT
1 TGTCCCAGACAGGTCTTACACT
69542285 AGCCCTCATC
Statistics
Matches: 98, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
46 49 0.50
47 42 0.43
48 7 0.07
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
TGTCCCAGACAGGTCTTACACTGGCTCATCATCTCGAAGTCGATGCA
Found at i:69546023 original size:27 final size:27
Alignment explanation
Indices: 69545943--69546052 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
69545933 AGCATGGCTG
* * *
69545943 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
* *
69545969 CCAGATAC--AAATAATCATGGTAGAGCCA
1 CCAGA-ACAGAAAT-AT-GTGGCAGAGCCA
69545997 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
* *
69546024 CCAGATCAGATAAT-TGTGGCATAGCCA
1 CCAGAACAGA-AATATGTGGCAGAGCCA
69546051 CC
1 CC
69546053 GGGACGCTTC
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
25 2 0.03
26 5 0.07
27 39 0.57
28 18 0.26
29 4 0.06
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (27 bp):
CCAGAACAGAAATATGTGGCAGAGCCA
Found at i:69546050 original size:54 final size:54
Alignment explanation
Indices: 69545943--69546052 Score: 132
Period size: 54 Copynumber: 2.0 Consensus size: 54
69545933 AGCATGGCTG
* * *
69545943 CCAGAACAGATAATGTGACAGAGTCACCAGATACAAATAATCATGGTAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCATGGCAGAGCCA
* * ** *
69545997 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAAATAATCATGGCAGAGCCA
69546051 CC
1 CC
69546053 GGGACGCTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCATGGCAGAGCCA
Found at i:69547517 original size:24 final size:24
Alignment explanation
Indices: 69547485--69547558 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
69547475 ACACAGTTCA
*
69547485 CCCTAATCAGCTCCTAAATCCTTT
1 CCCTAATCAGCTCCTAAATCCTCT
*
69547509 CCCTGATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
69547533 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
69547557 CC
1 CC
69547559 AGACAGACTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.22, C:0.41, G:0.05, T:0.32
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:69554683 original size:25 final size:26
Alignment explanation
Indices: 69554651--69554726 Score: 104
Period size: 25 Copynumber: 3.0 Consensus size: 26
69554641 CTGTATATGT
* *
69554651 ATGC-TCACACGAGCTGTGAATCAGA
1 ATGCTTCACATGAGCTGTGAATCAAA
69554676 ATG-TTCACATGAGCTGTGAATCAAA
1 ATGCTTCACATGAGCTGTGAATCAAA
*
69554701 ATGCTT-ACATGAGCTGTGAGTCAAA
1 ATGCTTCACATGAGCTGTGAATCAAA
69554726 A
1 A
69554727 CGTAGCTGCA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
25 44 0.96
26 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (26 bp):
ATGCTTCACATGAGCTGTGAATCAAA
Found at i:69556192 original size:22 final size:22
Alignment explanation
Indices: 69556167--69556210 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
69556157 GGGAGGTAAC
69556167 AATTGGTTAATCGATAGCTAAT
1 AATTGGTTAATCGATAGCTAAT
*
69556189 AATTGGTTAATCGGTAGCTAAT
1 AATTGGTTAATCGATAGCTAAT
69556211 CCTGCTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (22 bp):
AATTGGTTAATCGATAGCTAAT
Found at i:69567738 original size:40 final size:40
Alignment explanation
Indices: 69567694--69567881 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
69567684 TCATTTATAT
* * *
69567694 ATATGTGCTCCTGTTTGTACTTCGGTACCCTTGAATGCAC
1 ATATGTGCCCCTGTTTGTACTTCGGTACCCCTAAATGCAC
* *
69567734 ATATGTACCCCTGTTTGTACTTCGATACCCCTAAATGCAC
1 ATATGTGCCCCTGTTTGTACTTCGGTACCCCTAAATGCAC
* ** * * * * *
69567774 ACATGTGCCTTTGCTTGTACTTTGGCACCTCTAAACGCAC
1 ATATGTGCCCCTGTTTGTACTTCGGTACCCCTAAATGCAC
** *
69567814 ATACAT-CCCCTATTTGTACTTCGGTACCCCTAAATGCAC
1 ATATGTGCCCCTGTTTGTACTTCGGTACCCCTAAATGCAC
** * *
69567853 ATACATGCCCCTATTTGTATTTCGGTACC
1 ATATGTGCCCCTGTTTGTACTTCGGTACC
69567882 TCTGAAAGCA
Statistics
Matches: 120, Mismatches: 27, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
39 31 0.26
40 89 0.74
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (40 bp):
ATATGTGCCCCTGTTTGTACTTCGGTACCCCTAAATGCAC
Found at i:69582772 original size:40 final size:40
Alignment explanation
Indices: 69582721--69582943 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
69582711 CCTACGGAAC
*
69582721 TTTAAGCCCGGATATATATTAATAGCACGAAGCCTGCGGGA
1 TTTAA-CCCGGATATATATTACTAGCACGAAGCCTGCGGGA
* * *
69582762 TTTAACCCGGATATATATTACCAGCACGAAGCCTTCAGGA
1 TTTAACCCGGATATATATTACTAGCACGAAGCCTGCGGGA
*
69582802 TTTAACCCGGATATATATATTACTAGCATGAAGCCTGCGGGA
1 TTTAACCCGG--ATATATATTACTAGCACGAAGCCTGCGGGA
**
69582844 TTTAACCCGGATATATATATTACTAGCACGAAGCCTGCGAAA
1 TTTAACCCGG--ATATATATTACTAGCACGAAGCCTGCGGGA
* *
69582886 TTTAAACCGGATATATATTACCAGCACGAAGCCTGCGGGA
1 TTTAACCCGGATATATATTACTAGCACGAAGCCTGCGGGA
69582926 TTTAACCCGGATATATAT
1 TTTAACCCGGATATATAT
69582944 ATTACTATAT
Statistics
Matches: 164, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
40 85 0.52
41 5 0.03
42 74 0.45
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (40 bp):
TTTAACCCGGATATATATTACTAGCACGAAGCCTGCGGGA
Found at i:69582944 original size:42 final size:42
Alignment explanation
Indices: 69582732--69582950 Score: 329
Period size: 42 Copynumber: 5.3 Consensus size: 42
69582722 TTAAGCCCGG
*
69582732 ATATATATTAATAGCACGAAGCCTGCGGGATTTAACCCGG--
1 ATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
* * *
69582772 ATATATATTACCAGCACGAAGCCTTCAGGATTTAACCCGGAT
1 ATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
69582814 ATATATATTACTAGCATGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
** *
69582856 ATATATATTACTAGCACGAAGCCTGCGAAATTTAAACCGG--
1 ATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
69582896 ATATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
69582938 ATATATATTACTA
1 ATATATATTACTA
69582951 TATATCGACT
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
40 72 0.46
42 86 0.54
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.27
Consensus pattern (42 bp):
ATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:69582950 original size:82 final size:82
Alignment explanation
Indices: 69582728--69582950 Score: 335
Period size: 82 Copynumber: 2.7 Consensus size: 82
69582718 AACTTTAAGC
* *
69582728 CCGGATATATATTAATAGCACGAAGCCTGCGGGATTTAACCCGG--ATATATATTACCAGCACGA
1 CCGGATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACTAGCACGA
* * *
69582791 AGCCTTCAGGATTTAAC
66 AGCCTGCAGAATTTAAA
*
69582808 CCGGATATATATATTACTAGCATGAAGCCTGCGGGATTTAACCCGGATATATATATTACTAGCAC
1 CCGG--ATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACTAGCAC
69582873 GAAGCCTGC-GAAATTTAAA
64 GAAGCCTGCAG-AATTTAAA
*
69582892 CCGGATATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACTA
1 CCGGATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACTA
69582951 TATATCGACT
Statistics
Matches: 130, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
80 4 0.03
82 91 0.70
83 1 0.01
84 34 0.26
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (82 bp):
CCGGATATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACTAGCACGA
AGCCTGCAGAATTTAAA
Found at i:69593380 original size:41 final size:40
Alignment explanation
Indices: 69593329--69593408 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 40
69593319 GAGGCGTGAT
* **
69593329 TTCGTGTAAGACCATGTCTAGGACATTGGCATCGTATATGA
1 TTCGTATAAGACCATGTCTAGGACAGAGGCATCG-ATATGA
* *
69593370 TTCGTATAAGACCCTGTCTGGGACAGAGGCATCGATATG
1 TTCGTATAAGACCATGTCTAGGACAGAGGCATCGATATG
69593409 TGATAGCATG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 5 0.15
41 29 0.85
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (40 bp):
TTCGTATAAGACCATGTCTAGGACAGAGGCATCGATATGA
Found at i:69605694 original size:41 final size:41
Alignment explanation
Indices: 69605617--69605767 Score: 162
Period size: 42 Copynumber: 3.6 Consensus size: 41
69605607 TTCCCAAACG
* *
69605617 TGGTCTTACATGCAATCACATATCGATGCCACTGTCCTAGACA
1 TGGTCTTACACG-AATCACATATCGATGCCAATGTCC-AGACA
* *
69605660 GGGTCTTACACCG-ATCAAATAT-GATGCCAATGTCCCAGACA
1 TGGTCTTACA-CGAATCACATATCGATGCCAATGT-CCAGACA
* *
69605701 TGGTCTTACACGTAATCACATATCGATGTCAACGTCCAGACA
1 TGGTCTTACACG-AATCACATATCGATGCCAATGTCCAGACA
* *
69605743 TGGTCTTACATGAAAACACATATCG
1 TGGTCTTACACG-AATCACATATCG
69605768 GAAATCCTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
40 2 0.02
41 24 0.26
42 47 0.51
43 18 0.20
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (41 bp):
TGGTCTTACACGAATCACATATCGATGCCAATGTCCAGACA
Found at i:69612357 original size:25 final size:25
Alignment explanation
Indices: 69612329--69612378 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
69612319 CATTTTATAA
69612329 CATCTCCTAATATTCATGAACTAGT
1 CATCTCCTAATATTCATGAACTAGT
69612354 CATCTCCTAATATTCATGAACTAGT
1 CATCTCCTAATATTCATGAACTAGT
69612379 TAAATTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (25 bp):
CATCTCCTAATATTCATGAACTAGT
Found at i:69613984 original size:23 final size:21
Alignment explanation
Indices: 69613958--69614000 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
69613948 ATGTTACAAA
*
69613958 ATAATAACATTAATAGTTAAATT
1 ATAATAA-ATTAA-AATTAAATT
69613981 ATAATAAATTAAAATTAAAT
1 ATAATAAATTAAAATTAAAT
69614001 AACCAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 5 0.26
23 7 0.37
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
ATAATAAATTAAAATTAAATT
Found at i:69616483 original size:4 final size:4
Alignment explanation
Indices: 69616474--69616500 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
69616464 GTTTTTCACT
69616474 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
69616501 CTAGAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:69618701 original size:156 final size:158
Alignment explanation
Indices: 69618539--69618851 Score: 370
Period size: 156 Copynumber: 2.0 Consensus size: 158
69618529 TTATACGATG
* * * *
69618539 TGATATAG-CATTATATAATATAGT-TGGAGGGCTAACTTTCAAATGTACGAAAAGTATAAGAAT
1 TGATATAGTC-TTATATAATATAGTAT-GAGGACTAACCTTCAAATGTACAAAAAGTATAAGAAC
* *
69618602 TTAGA-GCATATTTCAATTAGT-ATAATAATAAACAATAAT-ATG-TAACATATAATGTACT-TC
64 TCA-ATGCATATTTCAATTA-TAATAATAATAAAAAATAATAATGATAACATATAATGTACTAT-
69618662 TATTATATATAACTATTAATATATTATGTAATA
126 TATTATATATAACTATTAATATATTATGTAATA
* * *
69618695 TGATATAGTCTTATATAATATAGTATGAGGATTAACCTTCAAATGTACAAAAAGTATAGGGACTC
1 TGATATAGTCTTATATAATATAGTATGAGGACTAACCTTCAAATGTACAAAAAGTATAAGAACTC
* *
69618760 AATGCATATTTTAATTATAATAATAATAAAAAATAATACATGATAATTAATATATAATGTACTAT
66 AATGCATATTTCAATTATAATAATAATAAAAAATAATA-ATG---A-TAACATATAATGTACTAT
* *
69618825 TATTCTATATAACTATTATTATATTAT
126 TATTATATATAACTATTAATATATTAT
69618852 ATATTATAAT
Statistics
Matches: 132, Mismatches: 13, Indels: 17
0.81 0.08 0.10
Matches are distributed among these distances:
155 2 0.02
156 84 0.64
157 2 0.02
158 3 0.02
163 40 0.30
164 1 0.01
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (158 bp):
TGATATAGTCTTATATAATATAGTATGAGGACTAACCTTCAAATGTACAAAAAGTATAAGAACTC
AATGCATATTTCAATTATAATAATAATAAAAAATAATAATGATAACATATAATGTACTATTATTA
TATATAACTATTAATATATTATGTAATA
Found at i:69619158 original size:18 final size:17
Alignment explanation
Indices: 69619130--69619163 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
69619120 TCATTGATGC
69619130 ATATATATATACTATAA
1 ATATATATATACTATAA
69619147 ATATATTATATACTATA
1 ATATA-TATATACTATA
69619164 TGGCATGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATATATATACTATAA
Found at i:69621838 original size:22 final size:22
Alignment explanation
Indices: 69621804--69621845 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
69621794 GCTGACCTAT
* *
69621804 ACGAATGGGCTCATAAGTTCTC
1 ACGAACGGACTCATAAGTTCTC
69621826 ACGAACGGACTCATAAGTTC
1 ACGAACGGACTCATAAGTTC
69621846 GTAGAGGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (22 bp):
ACGAACGGACTCATAAGTTCTC
Found at i:69626676 original size:50 final size:50
Alignment explanation
Indices: 69626601--69626838 Score: 307
Period size: 50 Copynumber: 4.7 Consensus size: 50
69626591 ACCGAAGCTC
* *
69626601 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
* * * *
69626651 TCTGGTATACGTAGTAGCCTGCACTTAGTACTATACATGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
* * * * *
69626701 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGCTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAA
* * *
69626752 T-TGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAA
1 TCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
* *
69626802 TCTGGTACACGTAGTAGCCTGCACTCAGTAATACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
69626839 CGTGACTTAA
Statistics
Matches: 161, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
50 120 0.75
51 41 0.25
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
Found at i:69626797 original size:101 final size:100
Alignment explanation
Indices: 69626612--69626844 Score: 308
Period size: 101 Copynumber: 2.3 Consensus size: 100
69626602 CTGGTACGCA
* *
69626612 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTATACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCGAACAATCTGGTATACGTAGTAGCCTGCACTT
* ** *
69626677 AGTACTATACATGTGACCTAACCATCTGATACACG
66 AGTACTACACATGCAACCTAACAATCTGATACACG
* * *
69626712 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGCTAT-TGG-GTACGCATAGTAGCCTGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCGAA-CAATCTGGTATACG--TAGTAGCCTGCA
*
69626775 CTTAGTACTACACATGCAACCTAACAATCTGGTACACG
63 CTTAGTACTACACATGCAACCTAACAATCTGATACACG
* * *
69626813 TAGTAGCCTGCACTCAGTAATACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC
69626845 TTAAAACCGT
Statistics
Matches: 116, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
99 4 0.03
100 36 0.31
101 76 0.66
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCGAACAATCTGGTATACGTAGTAGCCTGCACTT
AGTACTACACATGCAACCTAACAATCTGATACACG
Found at i:69630680 original size:69 final size:69
Alignment explanation
Indices: 69630567--69631272 Score: 499
Period size: 69 Copynumber: 10.2 Consensus size: 69
69630557 AATTATCATT
* *
69630567 TGTAAAATCAAGGTTCGCAGGCAAAGAG-CTGTGGCCTCCAACACAGTTAGCGAGAGCAAAGCTC
1 TGTAAAATCAAGGTTCGCAGGCAAAGAGTC-GTGACCTCTAACACAGTTAGCGAGAGCAAAGCTC
69630631 CCAAC
65 CCAAC
* * * *
69630636 TATAAAATCAAGGTTCGCAGGCGAAGAGTCGTGACCTCTAACACAATTAGCGAGAGTAAAGCTCC
1 TGTAAAATCAAGGTTCGCAGGCAAAGAGTCGTGACCTCTAACACAGTTAGCGAGAGCAAAGCTCC
*
69630701 CAGC
66 CAAC
* * * * *
69630705 TGTAAAATCGAGGTTCGCAGGCAAAGAG-CTATGATCTCCAACACAGTTAGCGAGAACAAAGCTC
1 TGTAAAATCAAGGTTCGCAGGCAAAGAGTC-GTGACCTCTAACACAGTTAGCGAGAGCAAAGCTC
* *
69630769 TCAGC
65 CCAAC
* * * * * * * *
69630774 TGTAAAATCGATGTTCGTAGGAAAAGAG-CTGCGATCTCCAACACAGTTAG-GAGAACAAAGCTC
1 TGTAAAATCAAGGTTCGCAGGCAAAGAGTC-GTGACCTCTAACACAGTTAGCGAGAGCAAAGCTC
** *
69630837 TTAGC
65 CCAAC
* * * * * * * * * * *
69630842 TGTAAAATCGATGTTCGTAAGAAAAGAGTTGTAATCTCCAACACAGTTAGCGAGAACAAAGCTCT
1 TGTAAAATCAAGGTTCGCAGGCAAAGAGTCGTGACCTCTAACACAGTTAGCGAGAGCAAAGCTCC
*
69630907 CAAT
66 CAAC
* * * * * * * * * *
69630911 TGTAAAATCGAGGATCGTAGGCGAAGAGCCTTGACATCTAACATAGTTAGCAAAAGCAAAGCTCC
1 TGTAAAATCAAGGTTCGCAGGCAAAGAGTCGTGACCTCTAACACAGTTAGCGAGAGCAAAGCTCC
*
69630976 CAGC
66 CAAC
* * * * * * * *
69630980 TATAAAATTAAGGTTTGCAGGCGAAGAGTTGTGACCTCTAACATATTTAACGAGAGCAAAAG-TC
1 TGTAAAATCAAGGTTCGCAGGCAAAGAGTCGTGACCTCTAACACAGTTAGCGAGAGC-AAAGCTC
*
69631044 CCAAA
65 CCAAC
* * * * *** * *
69631049 TATAAAATTAAGGCTT-GCAAGCAAAGAGCCACAACAT-TCAACACAGTTAGCGAGAGCGAAGCT
1 TGTAAAATCAAGG-TTCGCAGGCAAAGAGTCGTGACCTCT-AACACAGTTAGCGAGAGCAAAGCT
69631112 CCCAAC
64 CCCAAC
* * * * * * * * * *
69631118 TGTAAAATCAAGGTTCGCAGGCGAAGAGCCATAACCTCAAACATAATTAGCAAGAACTAAGCTCC
1 TGTAAAATCAAGGTTCGCAGGCAAAGAGTCGTGACCTCTAACACAGTTAGCGAGAGCAAAGCTCC
* **
69631183 TAGT
66 CAAC
* * ** * * ** * *
69631187 TGTAAAATCAAGGTTTGTAGGTGAAGAGTCGCGACCTCTAACATAACTAGAGAGAGTAAAGCTCC
1 TGTAAAATCAAGGTTCGCAGGCAAAGAGTCGTGACCTCTAACACAGTTAGCGAGAGCAAAGCTCC
69631252 CAAC
66 CAAC
*
69631256 TGTAAAACCAAGGTTCG
1 TGTAAAATCAAGGTTCG
69631273 TATATAAAAA
Statistics
Matches: 515, Mismatches: 112, Indels: 20
0.80 0.17 0.03
Matches are distributed among these distances:
68 69 0.13
69 439 0.85
70 7 0.01
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (69 bp):
TGTAAAATCAAGGTTCGCAGGCAAAGAGTCGTGACCTCTAACACAGTTAGCGAGAGCAAAGCTCC
CAAC
Found at i:69634871 original size:7 final size:6
Alignment explanation
Indices: 69634850--69634884 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
69634840 AATTGAAATG
*
69634850 AAAATA AAAAGA AAAAGAA AAAAGA AAAAGA AAAA
1 AAAAGA AAAAGA AAAAG-A AAAAGA AAAAGA AAAA
69634885 TAGAGATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (6 bp):
AAAAGA
Found at i:69634873 original size:13 final size:13
Alignment explanation
Indices: 69634855--69634884 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
69634845 AAATGAAAAT
69634855 AAAAAGAAAAAGA
1 AAAAAGAAAAAGA
69634868 AAAAAGAAAAAGA
1 AAAAAGAAAAAGA
69634881 AAAA
1 AAAA
69634885 TAGAGATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAGA
Found at i:69638836 original size:79 final size:81
Alignment explanation
Indices: 69638704--69638884 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
69638694 AATGATGTCC
* *
69638704 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
*
69638768 CGAGATACTA-ATTCCG
66 CGAGATACTATA-ACCG
* * * **
69638784 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTGT
*
69638846 GCGAGTTACTATAACCG
65 GCGAGATACTATAACCG
*
69638863 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
69638885 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
CGAGATACTATAACCG
Found at i:69638898 original size:40 final size:40
Alignment explanation
Indices: 69638704--69638884 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 40
69638694 AATGATGTCC
* * * *
69638704 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCG
* * *
69638744 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCG
69638784 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
* *
69638823 GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
*
69638863 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
69638885 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
Found at i:69638906 original size:79 final size:79
Alignment explanation
Indices: 69638753--69638907 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
69638743 GGACTAAGAT
* * **
69638753 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
69638818 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
69638832 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
69638895 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
69638908 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:69647285 original size:47 final size:47
Alignment explanation
Indices: 69647231--69647323 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
69647221 TAATATCCCG
69647231 GGATACTGATTCAAGATAAGCTCTTATTCAGAGGAGAAATAGACCCA
1 GGATACTGATTCAAGATAAGCTCTTATTCAGAGGAGAAATAGACCCA
*
69647278 GGATACTGATTCAAGATAAGCTCTTATTGAGAGGAGAAATAGACCC
1 GGATACTGATTCAAGATAAGCTCTTATTCAGAGGAGAAATAGACCC
69647324 TGTTTAAAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.24
Consensus pattern (47 bp):
GGATACTGATTCAAGATAAGCTCTTATTCAGAGGAGAAATAGACCCA
Found at i:69654134 original size:28 final size:28
Alignment explanation
Indices: 69654094--69654148 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
69654084 TCTAGTTAGA
69654094 CAATTTTTCAATTCAATCTCGATTCTAG
1 CAATTTTTCAATTCAATCTCGATTCTAG
69654122 CAATTTTTCAATTCAATCTCGATTCTA
1 CAATTTTTCAATTCAATCTCGATTCTA
69654149 ACCCTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (28 bp):
CAATTTTTCAATTCAATCTCGATTCTAG
Found at i:69656702 original size:23 final size:23
Alignment explanation
Indices: 69656676--69656721 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
69656666 AGCATACAAG
*
69656676 TAAAGCACATCAACATTAATCAC
1 TAAAGCACATCAACATCAATCAC
69656699 TAAAGCACATCAACATCAATCAC
1 TAAAGCACATCAACATCAATCAC
69656722 ATTACATGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.48, C:0.28, G:0.04, T:0.20
Consensus pattern (23 bp):
TAAAGCACATCAACATCAATCAC
Found at i:69670844 original size:17 final size:17
Alignment explanation
Indices: 69670818--69670852 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
69670808 TTATATTTAA
*
69670818 ATTAATAAATAAATTAG
1 ATTAAAAAATAAATTAG
69670835 ATTAAAAAATAAATTAG
1 ATTAAAAAATAAATTAG
69670852 A
1 A
69670853 CATTTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (17 bp):
ATTAAAAAATAAATTAG
Found at i:69673611 original size:21 final size:21
Alignment explanation
Indices: 69673587--69673650 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
69673577 ACGAAAACCC
69673587 ATAAGGGTTAAATGGAAGCTT
1 ATAAGGGTTAAATGGAAGCTT
* * * * **
69673608 ATAAGAGCTGAATGGAAACCC
1 ATAAGGGTTAAATGGAAGCTT
69673629 ATAAGGGTTAAAAT-GAAGCTT
1 ATAAGGGTT-AAATGGAAGCTT
69673650 A
1 A
69673651 GAAGAGCTAA
Statistics
Matches: 30, Mismatches: 12, Indels: 2
0.68 0.27 0.05
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.42, C:0.09, G:0.25, T:0.23
Consensus pattern (21 bp):
ATAAGGGTTAAATGGAAGCTT
Found at i:69673628 original size:42 final size:41
Alignment explanation
Indices: 69673572--69673682 Score: 143
Period size: 42 Copynumber: 2.7 Consensus size: 41
69673562 GCACATAGGT
* *
69673572 GCTAAACGAAAACCCATAAGGGTTAAATGGAAGCTTATAAGA
1 GCTAAACTAAAACCCATAAGGGTTAAAT-GAAGCTTAGAAGA
* *
69673614 GCTGAA-TGGAAACCCATAAGGGTTAAAATGAAGCTTAGAAGA
1 GCTAAACT-AAAACCCATAAGGGTT-AAATGAAGCTTAGAAGA
*
69673656 GCTAAACTAAAACCCAGAAGGGTTAAA
1 GCTAAACTAAAACCCATAAGGGTTAAA
69673683 CTAAAACTCA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
41 3 0.05
42 51 0.86
43 5 0.08
ACGTcount: A:0.45, C:0.14, G:0.23, T:0.18
Consensus pattern (41 bp):
GCTAAACTAAAACCCATAAGGGTTAAATGAAGCTTAGAAGA
Found at i:69673674 original size:21 final size:21
Alignment explanation
Indices: 69673650--69673689 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
69673640 AATGAAGCTT
69673650 AGAAGAGCTAAACTAAAACCC
1 AGAAGAGCTAAACTAAAACCC
* *
69673671 AGAAGGGTTAAACTAAAAC
1 AGAAGAGCTAAACTAAAAC
69673690 TCATATAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.17, G:0.17, T:0.12
Consensus pattern (21 bp):
AGAAGAGCTAAACTAAAACCC
Found at i:69677198 original size:26 final size:24
Alignment explanation
Indices: 69677138--69677209 Score: 99
Period size: 24 Copynumber: 2.9 Consensus size: 24
69677128 TTAAGCTAGA
*
69677138 AACAGTAAGCTCTGACGAGCTGAG
1 AACAGTAAGCTCTTACGAGCTGAG
*
69677162 AACAGTAAGCTCTTACGAGCTGAT
1 AACAGTAAGCTCTTACGAGCTGAG
*
69677186 ATATCAGTAAGCTCATACGAGCTG
1 A-A-CAGTAAGCTCTTACGAGCTG
69677210 CGGTGAGTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
24 23 0.53
25 1 0.02
26 19 0.44
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (24 bp):
AACAGTAAGCTCTTACGAGCTGAG
Found at i:69689042 original size:12 final size:12
Alignment explanation
Indices: 69689023--69689053 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
69689013 GTGTTGTCGT
69689023 ACACGGCCTACC
1 ACACGGCCTACC
*
69689035 AGACGGCCTACC
1 ACACGGCCTACC
69689047 ACACGGC
1 ACACGGC
69689054 TATGTGGCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.26, C:0.45, G:0.23, T:0.06
Consensus pattern (12 bp):
ACACGGCCTACC
Found at i:69698098 original size:17 final size:17
Alignment explanation
Indices: 69698069--69698101 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
69698059 AAAATTTTTG
69698069 AAAAAAAAGAATAAAAT
1 AAAAAAAAGAATAAAAT
69698086 AAAAATAAA-AATAAAA
1 AAAAA-AAAGAATAAAA
69698102 ATGAAATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAAAAAAGAATAAAAT
Found at i:69701476 original size:19 final size:20
Alignment explanation
Indices: 69701452--69701490 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
69701442 AAATTTGACG
69701452 AGTAAG-TAGTAAATATTAA
1 AGTAAGCTAGTAAATATTAA
* *
69701471 AGTAAGCTCGTAAATTTTAA
1 AGTAAGCTAGTAAATATTAA
69701491 TATTTACTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.33
Consensus pattern (20 bp):
AGTAAGCTAGTAAATATTAA
Found at i:69702853 original size:21 final size:21
Alignment explanation
Indices: 69702828--69703019 Score: 102
Period size: 21 Copynumber: 9.1 Consensus size: 21
69702818 TTTACTTTCC
* *
69702828 GTTTAGCTCTCATGAGCTTCT
1 GTTTAACTCTTATGAGCTTCT
* *
69702849 GTTTAACTCATATGAGTTTCT
1 GTTTAACTCTTATGAGCTTCT
* *
69702870 GTTCAACT-TTATTGAGCTTTT
1 GTTTAACTCTTA-TGAGCTTCT
* *
69702891 GTTTAAC-CTTTATGGGTTTCT
1 GTTTAACTC-TTATGAGCTTCT
* * *
69702912 GTTCAGCTC-TATTGAGCTTTT
1 GTTTAACTCTTA-TGAGCTTCT
* * * *
69702933 GTTTAACCCTTATGGGTTTCC
1 GTTTAACTCTTATGAGCTTCT
* * *
69702954 GTTCAGCTCTTATGAGCTTCC
1 GTTTAACTCTTATGAGCTTCT
* * * *
69702975 GTTCAACCCTTATGGGTTTCT
1 GTTTAACTCTTATGAGCTTCT
* * * *
69702996 ATTTAGCTCTCATAAGCTTCT
1 GTTTAACTCTTATGAGCTTCT
69703017 GTT
1 GTT
69703020 CAGCCTTCGG
Statistics
Matches: 122, Mismatches: 43, Indels: 12
0.69 0.24 0.07
Matches are distributed among these distances:
20 4 0.03
21 112 0.92
22 6 0.05
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (21 bp):
GTTTAACTCTTATGAGCTTCT
Found at i:69702988 original size:84 final size:84
Alignment explanation
Indices: 69702823--69703019 Score: 236
Period size: 84 Copynumber: 2.3 Consensus size: 84
69702813 TCATGTTTAC
* * *
69702823 TTTCCGTTTAGCTCTCATGAGCTTCTGTTTAACTCATATGAGTTTCTGTTCAACTTTATTGAGCT
1 TTTCTGTTTAGCTCTCATGAGCTTCTGTTTAACCCATATGAGTTTCCGTTCAACTTTATTGAGCT
** * *
69702888 TTTGTTTAACCTTTATGGG
66 TCCGTTCAACCCTTATGGG
* * * * *
69702907 TTTCTGTTCAGCTCT-ATTGAGCTTTTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTA-TGAG
1 TTTCTGTTTAGCTCTCA-TGAGCTTCTGTTTAACCCATATGAGTTTCCGTTCAACT-TTATTGAG
69702970 CTTCCGTTCAACCCTTATGGG
64 CTTCCGTTCAACCCTTATGGG
* *
69702991 TTTCTATTTAGCTCTCATAAGCTTCTGTT
1 TTTCTGTTTAGCTCTCATGAGCTTCTGTT
69703020 CAGCCTTCGG
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
83 1 0.01
84 89 0.95
85 4 0.04
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.46
Consensus pattern (84 bp):
TTTCTGTTTAGCTCTCATGAGCTTCTGTTTAACCCATATGAGTTTCCGTTCAACTTTATTGAGCT
TCCGTTCAACCCTTATGGG
Found at i:69703021 original size:42 final size:42
Alignment explanation
Indices: 69702823--69703019 Score: 209
Period size: 42 Copynumber: 4.7 Consensus size: 42
69702813 TCATGTTTAC
* * * * *
69702823 TTTCCGTTTAGCTCTCATGAGCTTCTGTTTAACTCATATGAG
1 TTTCTGTTCAGCTCTCATGAGCTTCTGTTTAACCCTTATGGG
* * * *
69702865 TTTCTGTTCAACT-TTATTGAGCTTTTGTTTAACCTTTATGGG
1 TTTCTGTTCAGCTCTCA-TGAGCTTCTGTTTAACCCTTATGGG
*
69702907 TTTCTGTTCAGCTCT-ATTGAGCTTTTGTTTAACCCTTATGGG
1 TTTCTGTTCAGCTCTCA-TGAGCTTCTGTTTAACCCTTATGGG
* * * *
69702949 TTTCCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGGG
1 TTTCTGTTCAGCTCTCATGAGCTTCTGTTTAACCCTTATGGG
* * *
69702991 TTTCTATTTAGCTCTCATAAGCTTCTGTT
1 TTTCTGTTCAGCTCTCATGAGCTTCTGTT
69703020 CAGCCTTCGG
Statistics
Matches: 131, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
41 2 0.02
42 127 0.97
43 2 0.02
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.46
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTCATGAGCTTCTGTTTAACCCTTATGGG
Found at i:69706906 original size:5 final size:5
Alignment explanation
Indices: 69706896--69706945 Score: 59
Period size: 5 Copynumber: 10.2 Consensus size: 5
69706886 TTCAAGATTG
* *
69706896 CATAT CATAT CATAT CATAT C-TAA GAT-T GCATAT CATAT CATAT CATAT
1 CATAT CATAT CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT
69706945 C
1 C
69706946 TAAGATTGCA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
4 2 0.05
5 35 0.92
6 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (5 bp):
CATAT
Found at i:69706926 original size:29 final size:29
Alignment explanation
Indices: 69706878--69706960 Score: 148
Period size: 29 Copynumber: 2.8 Consensus size: 29
69706868 AGATTACAAA
69706878 ATCATATCTTCAAGATTGCATATCATATCAT
1 ATCATATC-T-AAGATTGCATATCATATCAT
69706909 ATCATATCTAAGATTGCATATCATATCAT
1 ATCATATCTAAGATTGCATATCATATCAT
69706938 ATCATATCTAAGATTGCATATCA
1 ATCATATCTAAGATTGCATATCA
69706961 CATCTAAGAT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
29 43 0.83
30 1 0.02
31 8 0.15
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.37
Consensus pattern (29 bp):
ATCATATCTAAGATTGCATATCATATCAT
Found at i:69706930 original size:19 final size:19
Alignment explanation
Indices: 69706906--69706997 Score: 103
Period size: 19 Copynumber: 5.3 Consensus size: 19
69706896 CATATCATAT
69706906 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
69706925 CATATCATATC----A-T-
1 CATATCATATCTAAGATTG
69706938 ---ATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
*
69706954 CATATCACATCTAAGATTG
1 CATATCATATCTAAGATTG
*
69706973 CATATTATATCTAAGATTG
1 CATATCATATCTAAGATTG
69706992 CATATC
1 CATATC
69706998 CTTAAAGATT
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
10 8 0.13
14 2 0.03
15 2 0.03
19 48 0.80
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Done.