Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 222 of 325
Found at i:69707825 original size:15 final size:16
Alignment explanation
Indices: 69707805--69707855 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 16
69707795 AAGGAGAAAA
69707805 TTTAAATTTTGTT-AT
1 TTTAAATTTTGTTAAT
**
69707820 TTTAAATTAAGTTAAT
1 TTTAAATTTTGTTAAT
*
69707836 TTTAAAGTTTTTTTAAT
1 TTTAAA-TTTTGTTAAT
69707853 TTT
1 TTT
69707856 TAATATATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
15 11 0.38
16 8 0.28
17 10 0.34
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (16 bp):
TTTAAATTTTGTTAAT
Found at i:69709993 original size:24 final size:24
Alignment explanation
Indices: 69709928--69709982 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
69709918 GATAGAGACA
* * * *
69709928 AAGACGAAGACAAAGGTAGAGATG
1 AAGATGAAGATAAGGGTCGAGATG
69709952 AAGATGAAGATAAGGGTCGAGATG
1 AAGATGAAGATAAGGGTCGAGATG
69709976 AAGATGA
1 AAGATGA
69709983 GTACGAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.47, C:0.05, G:0.35, T:0.13
Consensus pattern (24 bp):
AAGATGAAGATAAGGGTCGAGATG
Found at i:69710746 original size:35 final size:35
Alignment explanation
Indices: 69710661--69710877 Score: 219
Period size: 35 Copynumber: 6.2 Consensus size: 35
69710651 TGTCTAAGAA
*
69710661 TTGGGATAGACCCGTCTAAAGG-AACCTTTAAAAAG
1 TTGGGATAGACCTGTCT-AAGGCAACCTTTAAAAAG
* * *
69710696 TT-AGATAGACATGTCTAAGGCAACCTTTAAAAAT
1 TTGGGATAGACCTGTCTAAGGCAACCTTTAAAAAG
* * *
69710730 TTGGGATAGACCTGTCTAAGACAAGCTTTAAAAGG
1 TTGGGATAGACCTGTCTAAGGCAACCTTTAAAAAG
** * *
69710765 TTAAGATAGACCCGTCTAAAGG-AACCTTTAAAAGG
1 TTGGGATAGACCTGTCT-AAGGCAACCTTTAAAAAG
* * * *
69710800 TTGGAATAGACTTGTCTAAAGCAACCTTTAAAAGG
1 TTGGGATAGACCTGTCTAAGGCAACCTTTAAAAAG
69710835 TTGGGATAGACAC-GTCTAAGGCAA-CTTTAAAAAGG
1 TTGGGATAGAC-CTGTCTAAGGCAACCTTTAAAAA-G
*
69710870 TTGCGATA
1 TTGGGATA
69710878 AACATTGTCT
Statistics
Matches: 150, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
33 4 0.03
34 36 0.24
35 107 0.71
36 3 0.02
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (35 bp):
TTGGGATAGACCTGTCTAAGGCAACCTTTAAAAAG
Found at i:69710809 original size:70 final size:69
Alignment explanation
Indices: 69710661--69710872 Score: 250
Period size: 70 Copynumber: 3.0 Consensus size: 69
69710651 TGTCTAAGAA
* * * * *
69710661 TTGGGATAGACCCGTCTAAAGGAACCTTTAAAAAGTTAGATAGACATGTCTAAGGCAACCTTTAA
1 TTGGAATAGACCTGTCTAAAGCAACCTTTAAAAGGTTAGATAGACACGTCTAAGGCAACCTTTAA
**
69710726 AAAT
66 AAGG
* * *
69710730 TTGGGATAGACCTGTCT-AAGACAAGCTTTAAAAGGTTAAGATAGACCCGTCTAAAGG-AACCTT
1 TTGGAATAGACCTGTCTAAAG-CAACCTTTAAAAGGTT-AGATAGACACGTCT-AAGGCAACCTT
69710793 TAAAAGG
63 TAAAAGG
* *
69710800 TTGGAATAGACTTGTCTAAAGCAACCTTTAAAAGGTTGGGATAGACACGTCTAAGGCAA-CTTTA
1 TTGGAATAGACCTGTCTAAAGCAACCTTTAAAAGGTT-AGATAGACACGTCTAAGGCAACCTTT-
69710864 AAAAGG
64 AAAAGG
69710870 TTG
1 TTG
69710873 CGATAAACAT
Statistics
Matches: 123, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
68 3 0.02
69 37 0.30
70 76 0.62
71 7 0.06
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (69 bp):
TTGGAATAGACCTGTCTAAAGCAACCTTTAAAAGGTTAGATAGACACGTCTAAGGCAACCTTTAA
AAGG
Found at i:69710852 original size:105 final size:104
Alignment explanation
Indices: 69710665--69710871 Score: 310
Period size: 105 Copynumber: 2.0 Consensus size: 104
69710655 TAAGAATTGG
* *
69710665 GATAGACCCGTCTAAAGGAACCTTTAAAAAGTTAGATAGACATGTCTAAGGCAACCTTTAAAAAT
1 GATAGACCCGTCTAAAGGAACCTTTAAAAAGTTAGATAGACATGTCTAAAGCAACCTTTAAAAAG
69710730 TTGGGATAGACCTGTCTAAGACAAGCTTT-AAAAGGTTAA
66 TTGGGATAGACCTGTCTAAGACAA-CTTTAAAAAGGTTAA
* * * *
69710769 GATAGACCCGTCTAAAGGAACCTTTAAAAGGTTGGAATAGACTTGTCTAAAGCAACCTTTAAAAG
1 GATAGACCCGTCTAAAGGAACCTTTAAAAAGTTAG-ATAGACATGTCTAAAGCAACCTTTAAAAA
*
69710834 GTTGGGATAGACAC-GTCTAAGGCAACTTTAAAAAGGTT
65 GTTGGGATAGAC-CTGTCTAAGACAACTTTAAAAAGGTT
69710872 GCGATAAACA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
104 37 0.40
105 55 0.59
106 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (104 bp):
GATAGACCCGTCTAAAGGAACCTTTAAAAAGTTAGATAGACATGTCTAAAGCAACCTTTAAAAAG
TTGGGATAGACCTGTCTAAGACAACTTTAAAAAGGTTAA
Found at i:69728705 original size:23 final size:23
Alignment explanation
Indices: 69728679--69728723 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
69728669 TGGGTATGTG
*
69728679 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
69728702 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
69728724 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:69732122 original size:20 final size:19
Alignment explanation
Indices: 69732052--69732128 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 19
69732042 TCATATAGCC
* *
69732052 AGTAGTTCATCTGTATAAAT
1 AGTAATTCATCCGTAT-AAT
* * *
69732072 AG-AGTTCATCAGTAATAAC
1 AGTAATTCATCCGT-ATAAT
69732091 AGTAATTCATCCGTATCAAT
1 AGTAATTCATCCGTAT-AAT
*
69732111 AGTAATTCATCCATATAA
1 AGTAATTCATCCGTATAA
69732129 ACACATATCT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
19 18 0.38
20 30 0.62
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.34
Consensus pattern (19 bp):
AGTAATTCATCCGTATAAT
Found at i:69732325 original size:22 final size:24
Alignment explanation
Indices: 69732289--69732388 Score: 102
Period size: 24 Copynumber: 4.2 Consensus size: 24
69732279 TAGCTCCTCT
69732289 TGAGCTGATGAACAGTAAGCTCTAT-
1 TGAGCTGA--AACAGTAAGCTCTATA
69732314 TGAGCTG-AACAGTAAGCTC-ATA
1 TGAGCTGAAACAGTAAGCTCTATA
* * * *
69732336 CGAGTTGAAACGGTAAGCTCCA-A
1 TGAGCTGAAACAGTAAGCTCTATA
69732359 TGAGCTGAAAACAGTAAGCTCT-TA
1 TGAGCTG-AAACAGTAAGCTCTATA
69732383 TGAGCT
1 TGAGCT
69732389 AATATATCAG
Statistics
Matches: 63, Mismatches: 7, Indels: 11
0.78 0.09 0.14
Matches are distributed among these distances:
21 2 0.03
22 17 0.27
23 17 0.27
24 20 0.32
25 7 0.11
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (24 bp):
TGAGCTGAAACAGTAAGCTCTATA
Found at i:69735427 original size:93 final size:93
Alignment explanation
Indices: 69735268--69735438 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69735258 GGATGGTTGA
*** *
69735268 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
69735333 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
69735361 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
69735426 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
69735439 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69735441 original size:46 final size:46
Alignment explanation
Indices: 69735272--69735443 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
69735262 GGTTGAGCAT
* ***
69735272 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
* * * *
69735318 CTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-A--C
69735363 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
*
69735411 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69735444 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 1 0.01
46 59 0.57
47 27 0.26
48 3 0.03
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
Found at i:69747679 original size:42 final size:42
Alignment explanation
Indices: 69747620--69747781 Score: 191
Period size: 42 Copynumber: 3.8 Consensus size: 42
69747610 AGGGTTACTA
* *
69747620 AGACTATGTGTAAGACCATATCTGGGATATGGCATCAATATG
1 AGACTACGTGTAAGACCATATCTGGGATATGGCATCGATATG
*
69747662 AGACTACGTGTAAGACCATATCTGGGAAATGGCA-CTGATATG
1 AGACTACGTGTAAGACCATATCTGGGATATGGCATC-GATATG
* * * * *
69747704 AGACTTCGTGTAAGATCATAGCTGGGCTATTGGCATCGATACG
1 AGACTACGTGTAAGACCATATCTGGGATA-TGGCATCGATATG
* * * *
69747747 AGATTACATGTAAAACCATATCTAGGATATGGCAT
1 AGACTACGTGTAAGACCATATCTGGGATATGGCAT
69747782 TGGTATGGTA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 67 0.67
43 31 0.31
44 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (42 bp):
AGACTACGTGTAAGACCATATCTGGGATATGGCATCGATATG
Found at i:69752200 original size:29 final size:29
Alignment explanation
Indices: 69752157--69752216 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
69752147 TATGCAGTTG
69752157 TTCAAATTTAAATCGCATGATTCTATGCA
1 TTCAAATTTAAATCGCATGATTCTATGCA
*
69752186 TTCAAATTTAGATCGCATGATTCTATGCA
1 TTCAAATTTAAATCGCATGATTCTATGCA
69752215 TT
1 TT
69752217 TCTTTAATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.40
Consensus pattern (29 bp):
TTCAAATTTAAATCGCATGATTCTATGCA
Found at i:69757865 original size:84 final size:84
Alignment explanation
Indices: 69757690--69757977 Score: 285
Period size: 84 Copynumber: 3.4 Consensus size: 84
69757680 TTAAACGTCG
* * ** * * * * *
69757690 AGAATAAATCTCGAAACAAA-TTT-TTTAAATTACGTCTTTATTTGGAAACAAAACAATATCGAA
1 AGAATAAATCCCGAAACAAATTTTATTTAATTTAATTC-TAATTTAGAAACAAAATAAAATCAAA
* * * * *
69757753 TAAACTCTTGTTAAACAGCG
65 CAAAATCTTGTTGATCAGCA
* **
69757773 GGAATAAATCCCGAAACAAATTTTATTTAATTTAATTCTAATTTAGAATTAAAATAAAATCAAAC
1 AGAATAAATCCCGAAACAAATTTTATTTAATTTAATTCTAATTTAGAAACAAAATAAAATCAAAC
* *
69757838 AAAATCTTGTTAGAT-GGCG
66 AAAATCTTGTT-GATCAGCA
* * * * *
69757857 AGAATAAATCCCAAAACAGATTTTATTTAATATAATTCTAATTTGGAAACAAAATAAAATCAAAT
1 AGAATAAATCCCGAAACAAATTTTATTTAATTTAATTCTAATTTAGAAACAAAATAAAATCAAAC
69757922 AAAATCTTGTTGATCAGCA
66 AAAATCTTGTTGATCAGCA
* * * *
69757941 AGGATCAATCCCGAAATAAATTTTATTTAACTTAATT
1 AGAATAAATCCCGAAACAAATTTTATTTAATTTAATT
69757978 TCTCATTTTT
Statistics
Matches: 167, Mismatches: 34, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
83 21 0.13
84 135 0.81
85 11 0.07
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (84 bp):
AGAATAAATCCCGAAACAAATTTTATTTAATTTAATTCTAATTTAGAAACAAAATAAAATCAAAC
AAAATCTTGTTGATCAGCA
Found at i:69758226 original size:88 final size:88
Alignment explanation
Indices: 69757854--69758585 Score: 745
Period size: 88 Copynumber: 8.4 Consensus size: 88
69757844 TTGTTAGATG
* * *
69757854 GCGAGAATAAATCCCAAAACAGATTTTA-TTTAATATAAT--TC-TAATTTGGAAACAAAAT-AA
1 GCGAGAATAAATCCCAAAACAGATTTTATTTTAATTTAATACTCGT-TTTTGGAAATAAAATCAA
** * *
69757914 AA-TCAAATAAAATCTTGTTGATCA
65 AATTGGAATAAAATC-CGTTGAACA
* * * * * * * * * * *
69757938 GCAAGGATCAATCCCGAAATAAATTTTA-TTTAACTTAATTTCTCATTTTTGGCAACAAAATCAA
1 GCGAGAATAAATCCCAAAACAGATTTTATTTTAATTTAA-TACTCGTTTTTGGAAATAAAATCAA
* * * * *
69758002 AA-TGTAA-GATACCCGCTGAACA
65 AATTGGAATAAAATCCGTTGAACA
* * *
69758024 GCGAGAATAAATCCCAAAATAAATTTTATTTTAATTTTAATACTCGTTTTTGAAAATAAAA-CAA
1 GCGAGAATAAATCCCAAAACAGATTTTATTTTAA-TTTAATACTCGTTTTTGGAAATAAAATCAA
*
69758088 AATTTTGGAATAAAATCCGTTGAACG
65 AA--TTGGAATAAAATCCGTTGAACA
* *
69758114 GCAAGAATAAATCCCGAAACAGATTTTATTTTAATTTAATACTCGTTTTTGGAAATAAAATCAAA
1 GCGAGAATAAATCCCAAAACAGATTTTATTTTAATTTAATACTCGTTTTTGGAAATAAAATCAAA
* *
69758179 ATTGGAATAAAATCTGTTGAATA
66 ATTGGAATAAAATCCGTTGAACA
* * * *
69758202 GCGAGAATAATTCCCAAAATAGATTTTATTTTAATTTTAATACTCATTTTTGGAAATAAAATAAA
1 GCGAGAATAAATCCCAAAACAGATTTTATTTTAA-TTTAATACTCGTTTTTGGAAATAAAATCAA
* * *
69758267 AATTTGGAATAAGATCCGTTGATCG
65 AA-TTGGAATAAAATCCGTTGAACA
* * *
69758292 GCAAGAATAAATCCCGAAACAGATTTTATTTTAATTTAATACTCATTTTTGGAAATAAAATCAAA
1 GCGAGAATAAATCCCAAAACAGATTTTATTTTAATTTAATACTCGTTTTTGGAAATAAAATCAAA
** *
69758357 ATTGGAATAAAATCTATTGAACC
66 ATTGGAATAAAATCCGTTGAACA
* * * *
69758380 GCGGGAATAAATTCCGAAACA-ATTTTTATTTTAATTTAATACTCG-TTTTGGAAATAAAACCAA
1 GCGAGAATAAATCCCAAAACAGA-TTTTATTTTAATTTAATACTCGTTTTTGGAAATAAAATCAA
* *
69758443 AATTGGAATAAAATCCATTAAAC-
65 AATTGGAATAAAATCCGTTGAACA
* * *
69758466 GATGAAAATAAATCCCGAAACAGATTTTATTTTAATTTTAATACTCG-TTTTGGAAATAAAATCA
1 G-CGAGAATAAATCCCAAAACAGATTTTATTTTAA-TTTAATACTCGTTTTTGGAAATAAAATCA
* *
69758530 AAATTGGAATAAAATCTGTTGAACG
64 AAATTGGAATAAAATCCGTTGAACA
* * *
69758555 GTGGGAATAAATCCCAAAACGGATTTTATTT
1 GCGAGAATAAATCCCAAAACAGATTTTATTT
69758586 ACTTTTAATT
Statistics
Matches: 547, Mismatches: 82, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
84 30 0.05
85 1 0.00
86 36 0.07
87 105 0.19
88 192 0.35
89 91 0.17
90 92 0.17
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (88 bp):
GCGAGAATAAATCCCAAAACAGATTTTATTTTAATTTAATACTCGTTTTTGGAAATAAAATCAAA
ATTGGAATAAAATCCGTTGAACA
Found at i:69758239 original size:178 final size:175
Alignment explanation
Indices: 69758018--69758750 Score: 864
Period size: 178 Copynumber: 4.2 Consensus size: 175
69758008 AGATACCCGC
* *
69758018 TGAACAGCGAGAATAAATCCCAAAATAAATTTTATTTTAATTTTAATACTCGTTTTTGAAAATAA
1 TGAACAGCGAGAATAAATCCCAAAATAGATTTTATTTTAATTTTAATACTCG-TTTTGGAAATAA
*
69758083 AACAAAATTTTGGAATAAAATCCGTTGAACGGCAAGAATAAATCCCGAAACAGATTTTATTTTAA
65 AACAAAA--TTGGAATAAAATCCGTTAAACGGCAAGAATAAATCCCGAAACAGATTTTATTTTAA
69758148 -TTTAATACTCGTTTTTGGAAATAAAATCAAAATTGGAATAAAATCTGT
128 TTTTAATACTCG-TTTTGGAAATAAAATCAAAATTGGAATAAAATCTGT
* * *
69758196 TGAATAGCGAGAATAATTCCCAAAATAGATTTTATTTTAATTTTAATACTCATTTTTGGAAATAA
1 TGAACAGCGAGAATAAATCCCAAAATAGATTTTATTTTAATTTTAATACTC-GTTTTGGAAATAA
* * * *
69758261 AATAAAAATTTGGAATAAGATCCGTTGATCGGCAAGAATAAATCCCGAAACAGATTTTATTTTAA
65 AA-CAAAA-TTGGAATAAAATCCGTTAAACGGCAAGAATAAATCCCGAAACAGATTTTATTTTAA
* *
69758326 -TTTAATACTCATTTTTGGAAATAAAATCAAAATTGGAATAAAATCTAT
128 TTTTAATACTC-GTTTTGGAAATAAAATCAAAATTGGAATAAAATCTGT
* * * * *
69758374 TGAACCGCGGGAATAAATTCCGAAACA-ATTTTTATTTTAA-TTTAATACTCGTTTTGGAAATAA
1 TGAACAGCGAGAATAAATCCCAAAATAGA-TTTTATTTTAATTTTAATACTCGTTTTGGAAATAA
*
69758437 AACCAAAATTGGAATAAAATCCATTAAACGATG-AA-AATAAATCCCGAAACAGATTTTATTTTA
65 AA-CAAAATTGGAATAAAATCCGTTAAACG--GCAAGAATAAATCCCGAAACAGATTTTATTTTA
69758500 ATTTTAATACTCGTTTTGGAAATAAAATCAAAATTGGAATAAAATCTGT
127 ATTTTAATACTCGTTTTGGAAATAAAATCAAAATTGGAATAAAATCTGT
* * * ** *
69758549 TGAACGGTGGGAATAAATCCCAAAACGGATTTTA-TTTACTTTT-A-A-----TTT-G--A-AAA
1 TGAACAGCGAGAATAAATCCCAAAATAGATTTTATTTTAATTTTAATACTCGTTTTGGAAATAAA
* * **
69758602 A-AAAATT-GAATAAAATCTGTTAAACGACGGGAATAAATCCCGAAACAGATTTTA-TTTAATTT
66 ACAAAATTGGAATAAAATCCGTTAAACGGCAAGAATAAATCCCGAAACAGATTTTATTTTAATTT
* *
69758664 TAATATTCG-TTTGGAAATAAAATCAAAATAGAGAATAAAATCTGT
131 TAATACTCGTTTTGGAAATAAAATCAAAATTG-GAATAAAATCTGT
* * * * * *
69758709 TGAACGGTGGGAAAAAATTCCGAAATAGATTTTA-TTTAATTT
1 TGAACAGCGAGAATAAATCCCAAAATAGATTTTATTTTAATTT
69758751 AAAATTTTAT
Statistics
Matches: 498, Mismatches: 45, Indels: 42
0.85 0.08 0.07
Matches are distributed among these distances:
159 21 0.04
160 65 0.13
161 40 0.08
162 6 0.01
164 4 0.01
165 1 0.00
167 1 0.00
168 3 0.01
173 1 0.00
174 5 0.01
175 112 0.22
176 31 0.06
177 12 0.02
178 192 0.39
179 4 0.01
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.34
Consensus pattern (175 bp):
TGAACAGCGAGAATAAATCCCAAAATAGATTTTATTTTAATTTTAATACTCGTTTTGGAAATAAA
ACAAAATTGGAATAAAATCCGTTAAACGGCAAGAATAAATCCCGAAACAGATTTTATTTTAATTT
TAATACTCGTTTTGGAAATAAAATCAAAATTGGAATAAAATCTGT
Found at i:69758634 original size:73 final size:74
Alignment explanation
Indices: 69758529--69758667 Score: 217
Period size: 73 Copynumber: 1.9 Consensus size: 74
69758519 AAATAAAATC
* ** * *
69758529 AAAATTGGAATAAAATCTGTTGAACGGTGGGAATAAATCCCAAAACGGATTTTATTTACTTTTAA
1 AAAATTGGAATAAAATCTGTTAAACGACGGGAATAAATCCCAAAACAGATTTTATTTAATTTTAA
69758594 TTTGAAAAA
66 TTTGAAAAA
*
69758603 AAAATT-GAATAAAATCTGTTAAACGACGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAA
1 AAAATTGGAATAAAATCTGTTAAACGACGGGAATAAATCCCAAAACAGATTTTATTTAATTTTAA
69758667 T
66 T
69758668 ATTCGTTTGG
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
73 53 0.90
74 6 0.10
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.32
Consensus pattern (74 bp):
AAAATTGGAATAAAATCTGTTAAACGACGGGAATAAATCCCAAAACAGATTTTATTTAATTTTAA
TTTGAAAAA
Found at i:69763067 original size:23 final size:23
Alignment explanation
Indices: 69763037--69763083 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
69763027 AAAGTTGGGA
69763037 TAGGTTATATTTTCACAATTCTT
1 TAGGTTATATTTTCACAATTCTT
69763060 TAGGTTATATTTTCACAATTCTT
1 TAGGTTATATTTTCACAATTCTT
69763083 T
1 T
69763084 CTAAAAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.09, T:0.53
Consensus pattern (23 bp):
TAGGTTATATTTTCACAATTCTT
Found at i:69763870 original size:18 final size:18
Alignment explanation
Indices: 69763832--69763870 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
69763822 AGTGTTCTTG
*
69763832 AATAAAATTTAAAATTGA
1 AATAAAATTTAAAAATGA
69763850 AATAAAATTTATAAAAT-A
1 AATAAAATTTA-AAAATGA
69763868 AAT
1 AAT
69763871 TTTCATATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (18 bp):
AATAAAATTTAAAAATGA
Found at i:69771994 original size:12 final size:12
Alignment explanation
Indices: 69771977--69772002 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69771967 GTAAAAATGA
69771977 ATGTCAATTTTT
1 ATGTCAATTTTT
69771989 ATGTCAATTTTT
1 ATGTCAATTTTT
69772001 AT
1 AT
69772003 TTTGGCCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.58
Consensus pattern (12 bp):
ATGTCAATTTTT
Found at i:69772150 original size:23 final size:25
Alignment explanation
Indices: 69772107--69772152 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69772097 AAGCTTTATT
69772107 TGAAAATATATTTTGATATAAAAAA
1 TGAAAATATATTTTGATATAAAAAA
*
69772132 TGAAAATAT-TTTTTA-ATAAAA
1 TGAAAATATATTTTGATATAAAA
69772153 TTTAAAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 5 0.25
25 9 0.45
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (25 bp):
TGAAAATATATTTTGATATAAAAAA
Found at i:69776114 original size:33 final size:34
Alignment explanation
Indices: 69776075--69776147 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 34
69776065 AGACATGCAT
69776075 ATTCGGCCATAGGAAGGAGATTGGTG-TGCATGC
1 ATTCGGCCATAGGAAGGAGATTGGTGTTGCATGC
*
69776108 ATTCGGCCATAGGAAGGAGATTGGTGTTGCATGT
1 ATTCGGCCATAGGAAGGAGATTGGTGTTGCATGC
69776142 ATTCGG
1 ATTCGG
69776148 TTAGAGGCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 26 0.68
34 12 0.32
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (34 bp):
ATTCGGCCATAGGAAGGAGATTGGTGTTGCATGC
Found at i:69776685 original size:40 final size:40
Alignment explanation
Indices: 69776629--69776854 Score: 188
Period size: 40 Copynumber: 5.7 Consensus size: 40
69776619 TTGAATGATG
* *
69776629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTGACTATA
*
69776669 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGACTATA
* * * * *
69776709 CCCGGGTTAAGACCCGAAGGCAATTGTGCTAA-TGATTTTA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTGACTATA
* * * * *
69776749 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGACTATA
* * * * * * *
69776789 TCCGGGTTAAGTCCCGAAGGCAATGGTACGAGTTACTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGACTATA
* * * *
69776829 ACCGGGCTATGTCCCGAAGACATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
69776855 AACGAGTAGC
Statistics
Matches: 148, Mismatches: 33, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
39 3 0.02
40 135 0.91
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGACTATA
Found at i:69776766 original size:80 final size:81
Alignment explanation
Indices: 69776630--69776812 Score: 253
Period size: 80 Copynumber: 2.3 Consensus size: 81
69776620 TGAATGATGT
* * *
69776630 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCTAAGTGACCATATCCGGACTAAGACCCGAAGGCATTT
* *
69776694 GTGCGAGTTGCTATAC
66 GTGCGAGTTACTAAAC
* *** *
69776710 CCGGGTTAAGACCCGAAGGCAATTGTGCTAA-TGATTTTATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCTAAGTGACCATATCCGGACTAAGACCCGAAGGCATTT
*
69776774 GTGCGAGTTACTAAAT
66 GTGCGAGTTACTAAAC
69776790 CCGGGTTAAGTCCCGAAGGCAAT
1 CCGGGTTAAGTCCCGAAGGCAAT
69776813 GGTACGAGTT
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
80 81 0.90
81 9 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGTTAAGTCCCGAAGGCAATTGTGCTAAGTGACCATATCCGGACTAAGACCCGAAGGCATTT
GTGCGAGTTACTAAAC
Found at i:69776845 original size:120 final size:120
Alignment explanation
Indices: 69776629--69776847 Score: 271
Period size: 120 Copynumber: 1.8 Consensus size: 120
69776619 TTGAATGATG
* * * *
69776629 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGGCTAAGACCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATG
* * * *
69776694 GTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAATGATTTTA
66 GTACGAGTTACTATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAATGATTTTA
* * * * *
69776749 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAA
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAA
* *
69776812 TGGTACGAGTTACTATAACCGGGCTATGTCCCGAAG
64 TGGTACGAGTTACTATAACCGGGCTAAGACCCGAAG
69776848 ACATTTGAAC
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
120 74 0.90
121 8 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATG
GTACGAGTTACTATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAATGATTTTA
Found at i:69776846 original size:80 final size:80
Alignment explanation
Indices: 69776661--69776854 Score: 210
Period size: 80 Copynumber: 2.4 Consensus size: 80
69776651 TTGTGCTAAG
* * * * *
69776661 TGACCATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
1 TGACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGACCCGA
* * *
69776726 AGGCAATTGTGCTAA
66 AGGCAATGGTACGAA
* * * * * *
69776741 TGATTTTATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
1 TGACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGACCCG
*
69776805 AAGGCAATGGTACGAG
65 AAGGCAATGGTACGAA
* * *
69776821 TTACTATAACCGGGCTATGTCCCGAAGACATTTG
1 TGACTATAACCGGGCTAAGTCCCGAAGGCATTTG
69776855 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
79 1 0.01
80 91 0.99
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TGACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGACCCGA
AGGCAATGGTACGAA
Found at i:69784782 original size:40 final size:40
Alignment explanation
Indices: 69784671--69784775 Score: 153
Period size: 40 Copynumber: 2.7 Consensus size: 40
69784661 TGTGCTAATT
69784671 ATCC-GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
69784709 ATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
69784750 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
69784776 AACGAGTAGC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 4 0.07
39 7 0.12
40 46 0.78
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:69786590 original size:25 final size:25
Alignment explanation
Indices: 69786556--69786607 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
69786546 ATTACTCACA
69786556 CAAGTGATTTTCTTGAAAATTTTTT
1 CAAGTGATTTTCTTGAAAATTTTTT
69786581 CAAGTGATTTTCTTGAAAATTTTTT
1 CAAGTGATTTTCTTGAAAATTTTTT
69786606 CA
1 CA
69786608 CTTTTGGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.50
Consensus pattern (25 bp):
CAAGTGATTTTCTTGAAAATTTTTT
Found at i:69787341 original size:21 final size:21
Alignment explanation
Indices: 69787311--69787353 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
69787301 GATGGCGAAA
*
69787311 AGGATCTAGCCTGGACGGGTG
1 AGGATATAGCCTGGACGGGTG
69787332 AGGATATAGCCTGGACGGGTG
1 AGGATATAGCCTGGACGGGTG
69787353 A
1 A
69787354 TCCTATAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.16, G:0.42, T:0.19
Consensus pattern (21 bp):
AGGATATAGCCTGGACGGGTG
Found at i:69790966 original size:50 final size:50
Alignment explanation
Indices: 69790911--69791011 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
69790901 AGAGGTAGAG
69790911 TTTGGTATTAAGTTAGCACCGGGAACAATGCCTATTTCTATTGCCCCGTA
1 TTTGGTATTAAGTTAGCACCGGGAACAATGCCTATTTCTATTGCCCCGTA
* *
69790961 TTTGGTATTGAGTTAGCACCGGGAATAATGCCTATTTCTATTGCCCCGTA
1 TTTGGTATTAAGTTAGCACCGGGAACAATGCCTATTTCTATTGCCCCGTA
69791011 T
1 T
69791012 AGAATGGCAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (50 bp):
TTTGGTATTAAGTTAGCACCGGGAACAATGCCTATTTCTATTGCCCCGTA
Found at i:69793163 original size:12 final size:12
Alignment explanation
Indices: 69793146--69793170 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69793136 ATCTAAGTGA
69793146 TCTTGATGATTT
1 TCTTGATGATTT
69793158 TCTTGATGATTT
1 TCTTGATGATTT
69793170 T
1 T
69793171 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:69794040 original size:45 final size:46
Alignment explanation
Indices: 69793885--69794156 Score: 211
Period size: 45 Copynumber: 5.8 Consensus size: 46
69793875 GTAATTTGTG
* *
69793885 TGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAGACAA
1 TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGAC-A
* * * *
69793932 GTGCCAGTGTAAGA-CATGTCCGGGACAT-GTATCGGCCT-CAAGACGT
1 -TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACGAGAC-A
69793978 TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGACA
1 TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGACA
* * * * *
69794022 TGACAATGTAAGACCATGTCTGGGACATGGCATCAACATGGATATGCAG-GA
1 TGCCAGTGTAAGACCATGTCTGGGACATGGCAT---C--GGCTACG-AGACA
* *
69794073 -GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATGAGGA
1 TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACGA-GA-CA
* *
69794120 TAGCCAATGTAAGACTATGTCTGGGACATGGCATCGG
1 T-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
69794157 TAACTTAACC
Statistics
Matches: 183, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
44 14 0.08
45 55 0.30
46 15 0.08
47 16 0.09
48 13 0.07
49 33 0.18
50 29 0.16
51 6 0.03
52 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.22
Consensus pattern (46 bp):
TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGACA
Found at i:69801138 original size:21 final size:21
Alignment explanation
Indices: 69801112--69801164 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
69801102 TCTAATTAAC
*
69801112 ACGGGCGTGGGGCTTGCATAT
1 ACGGGCGTGGGGCTTGAATAT
*
69801133 ACGGGCGTAGGGCTTGAATAT
1 ACGGGCGTGGGGCTTGAATAT
*
69801154 ACAGGCGTGGG
1 ACGGGCGTGGG
69801165 AGAAGCAACC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.19, C:0.17, G:0.43, T:0.21
Consensus pattern (21 bp):
ACGGGCGTGGGGCTTGAATAT
Found at i:69810124 original size:12 final size:12
Alignment explanation
Indices: 69810107--69810131 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69810097 ATGTAAGTGA
69810107 TCTTGATGATTT
1 TCTTGATGATTT
69810119 TCTTGATGATTT
1 TCTTGATGATTT
69810131 T
1 T
69810132 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:69810944 original size:46 final size:48
Alignment explanation
Indices: 69810841--69811110 Score: 234
Period size: 46 Copynumber: 5.7 Consensus size: 48
69810831 TAATTTGTGT
* * ** * *
69810841 GCCAGCGTAAGACCATGTCTGGGACATGGCATCGGAATTGAGACGAGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTCGAGACGAGA
*
69810889 GCCAATGTAAGA-CATGTCTGGGACAT-GCATCAGCGTCGAGACGTA-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTCGAGACG-AGA
* * * *
69810935 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCTGC-TACAAGGC-A-T
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGT-CGAGACGAGA
* *
69810979 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGT-AAGTACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG--CGTCGAG-ACGAGA
* * * * * * *
69811029 GCTAGTGTAAGACCATGTCTGGGAAATGGCATCGGCCTCGATTAGGACA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTCGA-GACGAGA
*
69811078 GCCAGTGTAAGACCATGTCTGAGACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
69811111 GATAACTTAA
Statistics
Matches: 182, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
44 12 0.07
45 15 0.08
46 55 0.30
47 18 0.10
48 14 0.08
49 37 0.20
50 31 0.17
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTCGAGACGAGA
Found at i:69811085 original size:99 final size:94
Alignment explanation
Indices: 69810841--69811110 Score: 268
Period size: 99 Copynumber: 2.8 Consensus size: 94
69810831 TAATTTGTGT
* * * * ** *
69810841 GCCAGCGTAAGACCATGTCTGGGACATGGCATCGGAATTGAGACGAGTGCCAATGTAAGA-CATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGA-AGGACAGCCAGTGTAAGACCATG
*
69810905 TCTGGGACAT-GCATCAGCGTCGAGACGTAA
64 TCTGGGACATGGCATCAGCGTCAAGACGTAA
* *
69810935 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCTGCTAC-AAGG-CATGTCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAAGGACA-GCCAGTGTAAGACCATG
69810996 TCTGGGACATGGCATCAGCACGT-AAGTACG-AGA
64 TCTGGGACATGGCATCAG--CGTCAAG-ACGTA-A
* *
69811029 GCTAGTGTAAGACCATGTCTGGGAAATGGCATCGGCCTCGATTAGGACAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGA--AGGACAGCCAGTGTAAGACCAT
*
69811094 GTCTGAGACATGGCATC
63 GTCTGGGACATGGCATC
69811111 GATAACTTAA
Statistics
Matches: 146, Mismatches: 15, Indels: 25
0.78 0.08 0.13
Matches are distributed among these distances:
90 12 0.08
91 16 0.11
92 13 0.09
93 17 0.12
94 29 0.20
95 13 0.09
96 7 0.05
97 3 0.02
99 34 0.23
100 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (94 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAAGGACAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCAGCGTCAAGACGTAA
Found at i:69823942 original size:31 final size:32
Alignment explanation
Indices: 69823877--69823946 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
69823867 ATTTTTGTAA
*
69823877 TTTATAATTTCTTTTAGAAAATTTATATAATT
1 TTTATAATTTCTTTTAGAAAATTTAAATAATT
* *
69823909 TTTATATATTTCTTTTA-AAATTTTAAAT-TTT
1 TTTATA-ATTTCTTTTAGAAAATTTAAATAATT
69823940 TTTATAA
1 TTTATAA
69823947 AAAAAAAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 1 0.03
31 8 0.24
32 15 0.44
33 10 0.29
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (32 bp):
TTTATAATTTCTTTTAGAAAATTTAAATAATT
Found at i:69825127 original size:240 final size:240
Alignment explanation
Indices: 69824704--69825183 Score: 908
Period size: 240 Copynumber: 2.0 Consensus size: 240
69824694 AAACTTGCAT
*
69824704 TATTTGTCAAATCACACCAAAAATTGATAAAAAAAGTTAATGTCTATTAACTTTACTGATGTGGC
1 TATTTGTCAAATCACACCAAAAATTGATAAAAAAAATTAATGTCTATTAACTTTACTGATGTGGC
69824769 ATCCATGTGGACACCCACATGTATACCACATAAGCAATTAATTATTTTTTAAAAAATCTGAAGAA
66 ATCCATGTGGACACCCACATGTATACCACATAAGCAATTAATTATTTTTTAAAAAATCTGAAGAA
*
69824834 ATATATAATTTTTTTTACTTCTTTAATACTTATTAAGTTTTTTAAATAATTTTTTTAATTTTTTT
131 ATATATAATTTTTTTTACTTCTTTAATACTTATTAAGTTTTTTAAATAATTTTTTAAATTTTTTT
69824899 AAAATTAAAAATTAATTAATTTGCTAACATGGCATCCATCATCAA
196 AAAATTAAAAATTAATTAATTTGCTAACATGGCATCCATCATCAA
69824944 TATTTGTCAAATCACACC-AAAATTGATAAAAAAAAATTAATGTCTATTAACTTTACTGATGTGG
1 TATTTGTCAAATCACACCAAAAATTGAT-AAAAAAAATTAATGTCTATTAACTTTACTGATGTGG
*
69825008 CATCCATGTGGACACCTACATGTATACCACATAAGCAATTAATTATTTTTTAAAAAATCTGAAGA
65 CATCCATGTGGACACCCACATGTATACCACATAAGCAATTAATTATTTTTTAAAAAATCTGAAGA
69825073 AATATATAATTTTTTTTACTTCTTTAATACTTATTAAGTTTTTTAAATAATTTTTTAAATTTTTT
130 AATATATAATTTTTTTTACTTCTTTAATACTTATTAAGTTTTTTAAATAATTTTTTAAATTTTTT
*
69825138 TAAAATTAAAAATTAATTAATTTGCTAACGTGGCATCCATCATCAA
195 TAAAATTAAAAATTAATTAATTTGCTAACATGGCATCCATCATCAA
69825184 AGGTAATAAA
Statistics
Matches: 235, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
239 9 0.04
240 226 0.96
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (240 bp):
TATTTGTCAAATCACACCAAAAATTGATAAAAAAAATTAATGTCTATTAACTTTACTGATGTGGC
ATCCATGTGGACACCCACATGTATACCACATAAGCAATTAATTATTTTTTAAAAAATCTGAAGAA
ATATATAATTTTTTTTACTTCTTTAATACTTATTAAGTTTTTTAAATAATTTTTTAAATTTTTTT
AAAATTAAAAATTAATTAATTTGCTAACATGGCATCCATCATCAA
Found at i:69833177 original size:23 final size:23
Alignment explanation
Indices: 69833144--69833187 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
69833134 CTCGAGTAAG
*
69833144 TTGTGTCAGGGTTACCCCTCAAT
1 TTGTGTCAGGGTTAACCCTCAAT
*
69833167 TTGTGTTAGGGTTAACCCTCA
1 TTGTGTCAGGGTTAACCCTCA
69833188 TCCCTTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (23 bp):
TTGTGTCAGGGTTAACCCTCAAT
Found at i:69838428 original size:18 final size:18
Alignment explanation
Indices: 69838405--69838439 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
69838395 TACGGTATAC
69838405 TGTGCCTTAACAGTACAT
1 TGTGCCTTAACAGTACAT
*
69838423 TGTGCCTTAACGGTACA
1 TGTGCCTTAACAGTACA
69838440 CAGTACCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (18 bp):
TGTGCCTTAACAGTACAT
Found at i:69838479 original size:18 final size:19
Alignment explanation
Indices: 69838452--69838492 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
69838442 GTACCTAAAC
* *
69838452 AGTAATCAGTAACGGTAGT
1 AGTAATCAGTAACAGTAAT
69838471 AGTAA-CAGTAACAGTAAT
1 AGTAATCAGTAACAGTAAT
69838489 AGTA
1 AGTA
69838493 TTCAACACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (19 bp):
AGTAATCAGTAACAGTAAT
Found at i:69838522 original size:45 final size:45
Alignment explanation
Indices: 69838471--69838582 Score: 163
Period size: 45 Copynumber: 2.5 Consensus size: 45
69838461 TAACGGTAGT
* *
69838471 AGTAACAGTAACAGTAATAGTATTCAACACACGAAGT-TCTGAATC
1 AGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTC-GAATC
* * *
69838516 TGTAACAGTAACGGTAACAGTATTCAACATACAAAGTGTCGAATC
1 AGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATC
69838561 AGTAACAGTAACAGTAACAGTA
1 AGTAACAGTAACAGTAACAGTA
69838583 GTCGGCACAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 57 0.97
46 2 0.03
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (45 bp):
AGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATC
Found at i:69838826 original size:40 final size:39
Alignment explanation
Indices: 69838782--69838868 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 39
69838772 AATTCATTAC
* * *
69838782 TTCAGTAATTTCATAGTTCAATACAGTA-CACATAACAATA
1 TTCAGTAACTTCACAATTCAATACAGTATC-CA-AACAATA
*
69838822 TTCAGTAACTTCACAATTCAATTCAGTATTCCAAACAATA
1 TTCAGTAACTTCACAATTCAATACAGTA-TCCAAACAATA
69838862 TTCAGTA
1 TTCAGTA
69838869 TTCCATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 38 0.93
41 2 0.05
42 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (39 bp):
TTCAGTAACTTCACAATTCAATACAGTATCCAAACAATA
Found at i:69842926 original size:40 final size:40
Alignment explanation
Indices: 69842871--69843141 Score: 372
Period size: 40 Copynumber: 6.8 Consensus size: 40
69842861 CGGATGATAA
* *
69842871 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* * *
69842911 CGAAGGCATTTGTGCTAGTGACTA-ATTCTGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
*
69842951 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGCCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
69842991 CAAAGGCA-TTGCTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTG-TGCGAGTTACTATATCCGGGCTAAGTCC
69843031 CGAAGGCA-TTGCTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTG-TGCGAGTTACTATATCCGGGCTAAGTCC
* *
69843071 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
69843111 CGAAGGCATTTGAGCGAG-TAGCTATATCCGG
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGG
69843142 TTAAATTCCG
Statistics
Matches: 215, Mismatches: 12, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
39 5 0.02
40 207 0.96
41 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:69850249 original size:40 final size:40
Alignment explanation
Indices: 69850196--69850398 Score: 263
Period size: 40 Copynumber: 5.1 Consensus size: 40
69850186 GATGATAACA
* *
69850196 AAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCA
1 AAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCG
*
69850236 AAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCG
*
69850276 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
*
69850316 AAGGCATTGGTGCGAGCT-ACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCCCG
* * *
69850356 AAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCCCG
1 AAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAAGTCCCG
69850395 AAGG
1 AAGG
69850399 TACTTGGTTT
Statistics
Matches: 152, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 16 0.11
40 134 0.88
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
Found at i:69853022 original size:15 final size:15
Alignment explanation
Indices: 69853002--69853033 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
69852992 TCTTCCACCT
69853002 TTATAAAAAATATCA
1 TTATAAAAAATATCA
69853017 TTATAAAAAATATCA
1 TTATAAAAAATATCA
69853032 TT
1 TT
69853034 TTAGTCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (15 bp):
TTATAAAAAATATCA
Found at i:69853542 original size:18 final size:18
Alignment explanation
Indices: 69853519--69853556 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
69853509 TCAATGAAAA
69853519 TTATGAAACTAATTACTT
1 TTATGAAACTAATTACTT
*
69853537 TTATGAAACTATTTACTT
1 TTATGAAACTAATTACTT
69853555 TT
1 TT
69853557 TCATTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (18 bp):
TTATGAAACTAATTACTT
Found at i:69854136 original size:15 final size:15
Alignment explanation
Indices: 69854116--69854144 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
69854106 TATAATAAAT
69854116 TATTAAAAAAATTAA
1 TATTAAAAAAATTAA
69854131 TATTAAAAAAATTA
1 TATTAAAAAAATTA
69854145 GTCAAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TATTAAAAAAATTAA
Found at i:69855123 original size:22 final size:22
Alignment explanation
Indices: 69855095--69855147 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
69855085 AATTAGAGTT
69855095 TTAGGGTTTTAAATAAATAAAA
1 TTAGGGTTTTAAATAAATAAAA
*
69855117 TTAGGGTTTTAAATAAATTAAA
1 TTAGGGTTTTAAATAAATAAAA
*
69855139 CTAGGGTTT
1 TTAGGGTTT
69855148 ATGGGTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.40
Consensus pattern (22 bp):
TTAGGGTTTTAAATAAATAAAA
Found at i:69855517 original size:125 final size:125
Alignment explanation
Indices: 69855283--69855529 Score: 415
Period size: 125 Copynumber: 2.0 Consensus size: 125
69855273 TTTGACCCTA
* * *
69855283 AAGAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGTAT
1 AAGAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* *
69855348 TGTTAGCAAAATTTCTGAAAAAAGCTCCCACGTAGACGCTTTTTTCTACAGTAGTTCCTG
66 TATCAGCAAAATTTCTGAAAAAAGCTCCCACGTAGACGCTTTTTTCTACAGTAGTTCCTG
*
69855408 AAGAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGTTTCAAGCAGGATGCAC
1 AAGAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
*
69855473 TATCAGCAAAATTTCT-AAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTC
66 TATCAGCAAAATTTCTGAAAAAAGCTCCCACGTAGACGCT-TTTTTCTACAGTAGTTC
69855530 ATGCTTGGCC
Statistics
Matches: 114, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
124 22 0.19
125 92 0.81
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (125 bp):
AAGAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
TATCAGCAAAATTTCTGAAAAAAGCTCCCACGTAGACGCTTTTTTCTACAGTAGTTCCTG
Found at i:69856117 original size:12 final size:12
Alignment explanation
Indices: 69856100--69856124 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69856090 TACACGACAC
69856100 TCGGTTAGTGGA
1 TCGGTTAGTGGA
69856112 TCGGTTAGTGGA
1 TCGGTTAGTGGA
69856124 T
1 T
69856125 GGGACATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.40, T:0.36
Consensus pattern (12 bp):
TCGGTTAGTGGA
Found at i:69859145 original size:30 final size:30
Alignment explanation
Indices: 69859111--69859206 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 30
69859101 ATTGAGGCAT
* *
69859111 TGGGCTCGGTGATTGTATGGATACTGTTGA
1 TGGGCCCGGTGATTGTGTGGATACTGTTGA
* * *
69859141 TGGGCCCGGTGATTGTGT-AAGTGCTATTGA
1 TGGGCCCGGTGATTGTGTGGA-TACTGTTGA
* * *
69859171 TGGGCCCGATGATTGTGTGGACACGGTTGA
1 TGGGCCCGGTGATTGTGTGGATACTGTTGA
69859201 TGGGCC
1 TGGGCC
69859207 TGTCCCATCA
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
29 1 0.02
30 51 0.96
31 1 0.02
ACGTcount: A:0.16, C:0.15, G:0.39, T:0.31
Consensus pattern (30 bp):
TGGGCCCGGTGATTGTGTGGATACTGTTGA
Found at i:69859715 original size:7 final size:7
Alignment explanation
Indices: 69859705--69859736 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
69859695 TTATATACAT
69859705 AATACTA
1 AATACTA
69859712 AATACTA
1 AATACTA
69859719 AATACTA
1 AATACTA
*
69859726 AGTACTA
1 AATACTA
69859733 AATA
1 AATA
69859737 TGAAATAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:69859757 original size:29 final size:29
Alignment explanation
Indices: 69859724--69859783 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
69859714 TACTAAATAC
*
69859724 TAAGTACTAAATATGAAATAACTATTTTA
1 TAAGTACTAAATATGAAACAACTATTTTA
*
69859753 TAAGTACTAAATATGAAACGACTATTTTA
1 TAAGTACTAAATATGAAACAACTATTTTA
69859782 TA
1 TA
69859784 TATATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (29 bp):
TAAGTACTAAATATGAAACAACTATTTTA
Found at i:69860722 original size:52 final size:53
Alignment explanation
Indices: 69860654--69860761 Score: 191
Period size: 53 Copynumber: 2.1 Consensus size: 53
69860644 AAATACAAAT
69860654 TAATTAAAATTACATAAATG-AAAAAATATTAAATAATATTCAAAAATTAAAA
1 TAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAATTAAAA
* *
69860706 TAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAACATTTAAAA
1 TAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAATTAAAA
69860759 TAA
1 TAA
69860762 ACCGTTACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
52 20 0.38
53 33 0.62
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (53 bp):
TAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAAAAATTAAAA
Found at i:69860731 original size:26 final size:26
Alignment explanation
Indices: 69860654--69860739 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
69860644 AAATACAAAT
69860654 TAATTAAAATTACATAAATGAAAAAA
1 TAATTAAAATTACATAAATGAAAAAA
* * *
69860680 T-ATTAAATAATATTCAAAAAT--TAAAA
1 TAATT-AA-AAT-TACATAAATGAAAAAA
69860706 TAATTAAAATTACATAAATGAAAAAA
1 TAATTAAAATTACATAAATGAAAAAA
69860732 -ATATTAAA
1 TA-ATTAAA
69860740 TAATATTCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
24 7 0.15
25 7 0.15
26 20 0.43
27 6 0.13
28 7 0.15
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.30
Consensus pattern (26 bp):
TAATTAAAATTACATAAATGAAAAAA
Found at i:69862199 original size:57 final size:57
Alignment explanation
Indices: 69862116--69862234 Score: 211
Period size: 57 Copynumber: 2.1 Consensus size: 57
69862106 TCATTGAGAA
* *
69862116 TGTAGAGTTCGTTAGAAGAATATGTGAAACAACATAATTTCAAGGAGGCGAGAATGT
1 TGTAGAGTTCGTTAGAAGAATATGTGAAACAACATAATTTCAAGAAGGCGAGAATAT
*
69862173 TGTAGAGTTCGTTAGAAGAATCTGTGAAACAACATAATTTCAAGAAGGCGAGAATAT
1 TGTAGAGTTCGTTAGAAGAATATGTGAAACAACATAATTTCAAGAAGGCGAGAATAT
69862230 TGTAG
1 TGTAG
69862235 GTAAGATAGA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (57 bp):
TGTAGAGTTCGTTAGAAGAATATGTGAAACAACATAATTTCAAGAAGGCGAGAATAT
Found at i:69866680 original size:20 final size:20
Alignment explanation
Indices: 69866655--69866692 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69866645 GACTAAGTCG
* *
69866655 AGAACTTTATAAATTTTTAT
1 AGAACTTCAAAAATTTTTAT
69866675 AGAACTTCAAAAATTTTT
1 AGAACTTCAAAAATTTTT
69866693 TGCTATACAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (20 bp):
AGAACTTCAAAAATTTTTAT
Found at i:69872159 original size:43 final size:43
Alignment explanation
Indices: 69871995--69872161 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
69871985 GGCTCGTACA
* ** * *
69871995 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATTG
1 ATGCCAATATCCCAGACATGGTCTTACACATAATCACATAATG
* * * * * *
69872037 ATGCCGATAGCCTAG-CTATGGTCTTACACAAAATCAAATAACG
1 ATGCCAATATCCCAGAC-ATGGTCTTACACATAATCACATAATG
* * * **
69872080 ATGCTAATGTCCCAAACATGGTCTTACATGTAATCACATAATG
1 ATGCCAATATCCCAGACATGGTCTTACACATAATCACATAATG
*
69872123 ATGCCAATTTCCCAGACATGGTCTTACACATAATCACAT
1 ATGCCAATATCCCAGACATGGTCTTACACATAATCACAT
69872162 CTCATTAATC
Statistics
Matches: 96, Mismatches: 26, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
42 5 0.05
43 90 0.94
44 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACATAATCACATAATG
Found at i:69879649 original size:43 final size:42
Alignment explanation
Indices: 69879561--69879727 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 42
69879551 AGCTCGTACA
* * * * *
69879561 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATTG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATAATG
* * *
69879603 ATGCCGATAGCCCAGCTATGGTCTTACACGAAATCAAATAACG
1 ATGCC-ATAGCCCAGCTATGGTCTTACACGTAATCACATAATG
* *
69879646 ATGCCA-ATGTCCTAGAC-ATAGTCTTACACGTAATCACATAATG
1 ATGCCATA-G-CCCAG-CTATGGTCTTACACGTAATCACATAATG
* *
69879689 ATGCCA-ATGTCCCATAC-ATGGTCTTACACATAATCACAT
1 ATGCCATA-G-CCCA-GCTATGGTCTTACACGTAATCACAT
69879728 CTCGTTAATC
Statistics
Matches: 103, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 94 0.91
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATAATG
Found at i:69884265 original size:24 final size:24
Alignment explanation
Indices: 69884233--69884278 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
69884223 TTATTAGGTT
69884233 AGGCTTGAATGATTGGAAATTTCA
1 AGGCTTGAATGATTGGAAATTTCA
69884257 AGGCTTGAATGATTGGAAATTT
1 AGGCTTGAATGATTGGAAATTT
69884279 TGATGAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.35
Consensus pattern (24 bp):
AGGCTTGAATGATTGGAAATTTCA
Found at i:69889320 original size:32 final size:32
Alignment explanation
Indices: 69889279--69889343 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
69889269 CTAACATAAG
69889279 TTCATTGTCACATTGATCATGGACTCATCATT
1 TTCATTGTCACATTGATCATGGACTCATCATT
69889311 TTCATTGTCACATTGATCATGGACTCATCATT
1 TTCATTGTCACATTGATCATGGACTCATCATT
69889343 T
1 T
69889344 CATGGATCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.42
Consensus pattern (32 bp):
TTCATTGTCACATTGATCATGGACTCATCATT
Found at i:69889851 original size:43 final size:43
Alignment explanation
Indices: 69889790--69889873 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
69889780 GTCACAGGCA
*
69889790 TCGCATCCACAATGAACTCAGACCACTCAATGAGCTCGGATGC
1 TCGCATCCACAATGAACTCAGACCACTCAACGAGCTCGGATGC
*
69889833 TCGCATCCATAATGAACTCAGACCACTCAACGAGCTCGGAT
1 TCGCATCCACAATGAACTCAGACCACTCAACGAGCTCGGAT
69889874 TGCTTAATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.19
Consensus pattern (43 bp):
TCGCATCCACAATGAACTCAGACCACTCAACGAGCTCGGATGC
Found at i:69896911 original size:9 final size:9
Alignment explanation
Indices: 69896897--69896964 Score: 73
Period size: 9 Copynumber: 7.6 Consensus size: 9
69896887 ATAAGTATAA
69896897 AATTAACCG
1 AATTAACCG
*
69896906 AATTAACTG
1 AATTAACCG
*
69896915 AATTAATCG
1 AATTAACCG
* *
69896924 AATTACCCA
1 AATTAACCG
*
69896933 AATTACCCG
1 AATTAACCG
* *
69896942 AATTATCCA
1 AATTAACCG
69896951 AATTAACCG
1 AATTAACCG
69896960 AATTA
1 AATTA
69896965 TTTGTATAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:69896965 original size:18 final size:18
Alignment explanation
Indices: 69896896--69896965 Score: 86
Period size: 18 Copynumber: 3.9 Consensus size: 18
69896886 AATAAGTATA
* *
69896896 AAATTAACCGAATTAACT
1 AAATTAACCGAATTATCC
* * *
69896914 GAATTAATCGAATTACCC
1 AAATTAACCGAATTATCC
*
69896932 AAATTACCCGAATTATCC
1 AAATTAACCGAATTATCC
69896950 AAATTAACCGAATTAT
1 AAATTAACCGAATTAT
69896966 TTGTATAAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (18 bp):
AAATTAACCGAATTATCC
Found at i:69897073 original size:18 final size:18
Alignment explanation
Indices: 69897050--69897087 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
69897040 TTTTTTATGA
69897050 TTGGGTTGAGTAATTGGG
1 TTGGGTTGAGTAATTGGG
*
69897068 TTGGGTTGGGTAATTGGG
1 TTGGGTTGAGTAATTGGG
69897086 TT
1 TT
69897088 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.45, T:0.42
Consensus pattern (18 bp):
TTGGGTTGAGTAATTGGG
Found at i:69897445 original size:25 final size:25
Alignment explanation
Indices: 69897417--69897465 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
69897407 CTTCTTTAAT
*
69897417 TCTCATCAAAACCAGTTATGAAAAC
1 TCTCATCAAAACAAGTTATGAAAAC
* *
69897442 TCTCATTAAAATAAGTTATGAAAA
1 TCTCATCAAAACAAGTTATGAAAA
69897466 ATAAAAATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.47, C:0.16, G:0.08, T:0.29
Consensus pattern (25 bp):
TCTCATCAAAACAAGTTATGAAAAC
Found at i:69897862 original size:17 final size:18
Alignment explanation
Indices: 69897840--69897875 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
69897830 AACAATTATT
*
69897840 TTTAAAATTAAAAA-TTA
1 TTTAAAAATAAAAAGTTA
69897857 TTTAAAAATAAAAAGTTA
1 TTTAAAAATAAAAAGTTA
69897875 T
1 T
69897876 ATATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
TTTAAAAATAAAAAGTTA
Found at i:69897870 original size:18 final size:18
Alignment explanation
Indices: 69897833--69897875 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
69897823 AAAGTATAAC
* *
69897833 AATTATTTTTAAAATTAAA
1 AATTA-TTTAAAAATAAAA
69897852 AATTATTTAAAAATAAAA
1 AATTATTTAAAAATAAAA
*
69897870 AGTTAT
1 AATTAT
69897876 ATATTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (18 bp):
AATTATTTAAAAATAAAA
Found at i:69901513 original size:22 final size:22
Alignment explanation
Indices: 69901485--69901526 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
69901475 TGACGGGGAA
*
69901485 ATAAAAAGGAGAAGAAGAATCC
1 ATAAAAAGCAGAAGAAGAATCC
*
69901507 ATAAAAAGCATAAGAAGAAT
1 ATAAAAAGCAGAAGAAGAAT
69901527 GCCCACTGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.07, G:0.19, T:0.12
Consensus pattern (22 bp):
ATAAAAAGCAGAAGAAGAATCC
Found at i:69902784 original size:13 final size:15
Alignment explanation
Indices: 69902762--69902794 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
69902752 ATAATTTTTT
69902762 TTTATAAAATTT-AA
1 TTTATAAAATTTCAA
69902776 TTTAT-AAATTTCAA
1 TTTATAAAATTTCAA
69902790 TTTAT
1 TTTAT
69902795 TTTCATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTATAAAATTTCAA
Found at i:69903887 original size:20 final size:21
Alignment explanation
Indices: 69903862--69903917 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
69903852 ATTTTTCTAT
69903862 TAAAATT-TATTTCAAATATA
1 TAAAATTATATTTCAAATATA
* *
69903882 TAAAATTATATATTTAAATTTA
1 TAAAATTATAT-TTCAAATATA
* *
69903904 TAAGATTGTATTTC
1 TAAAATTATATTTC
69903918 TATATATTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 7 0.24
21 5 0.17
22 17 0.59
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (21 bp):
TAAAATTATATTTCAAATATA
Found at i:69911333 original size:231 final size:231
Alignment explanation
Indices: 69910930--69911395 Score: 923
Period size: 231 Copynumber: 2.0 Consensus size: 231
69910920 AAGCTACCTA
69910930 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
69910995 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
69911060 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
*
69911125 TTTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
196 TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
69911161 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
69911226 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
69911291 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
69911356 TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
196 TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
69911392 TTAT
1 TTAT
69911396 ACCATTTCTC
Statistics
Matches: 234, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
231 234 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.35
Consensus pattern (231 bp):
TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
Found at i:69921623 original size:21 final size:21
Alignment explanation
Indices: 69921564--69921624 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
69921554 TTGTTCCAAA
*
69921564 TTTAATTTAATTTTT-TAAAAT
1 TTTAATTT-TTTTTTATAAAAT
* * * **
69921585 TTGAATATTATTCAATAAAAT
1 TTTAATTTTTTTTTATAAAAT
69921606 TTTAATTTTTTTTTATAAA
1 TTTAATTTTTTTTTATAAA
69921625 TGTTGAATAA
Statistics
Matches: 28, Mismatches: 11, Indels: 2
0.68 0.27 0.05
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
TTTAATTTTTTTTTATAAAAT
Found at i:69921769 original size:79 final size:73
Alignment explanation
Indices: 69921630--69921777 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 73
69921620 ATAAATGTTG
* *
69921630 AATAATATTTTGCTTGCCTCTTATTGATATAAGGGTATTTATACATGATATTATTGGTACTATTA
1 AATAATATTTTGCTTGCCACTTATTGATATAAGGGTATTTATACATGATATTATTAGTACTATTA
69921695 CAACCAAT
66 CAACCAAT
*
69921703 AATAATATTTTTCTTGCCACTTATTGATATGAGTATCAGGGTATTTATACATGATATTATTAGTA
1 AATAATATTTTGCTTGCCACTTATTG--AT-A-TA--AGGGTATTTATACATGATATTATTAGTA
69921768 CTATTACAAC
60 CTATTACAAC
69921778 TCATGATAGG
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
73 24 0.36
75 2 0.03
76 1 0.02
77 2 0.03
79 37 0.56
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (73 bp):
AATAATATTTTGCTTGCCACTTATTGATATAAGGGTATTTATACATGATATTATTAGTACTATTA
CAACCAAT
Found at i:69921859 original size:17 final size:17
Alignment explanation
Indices: 69921833--69921867 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
69921823 ACTGATATTC
*
69921833 TTTGCAAATTTTAGGCT
1 TTTGCAAATTTCAGGCT
*
69921850 TTTGCGAATTTCAGGCT
1 TTTGCAAATTTCAGGCT
69921867 T
1 T
69921868 GTTGGGCACG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.14, G:0.20, T:0.46
Consensus pattern (17 bp):
TTTGCAAATTTCAGGCT
Found at i:69925442 original size:27 final size:27
Alignment explanation
Indices: 69925412--69925589 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
69925402 ATATTGAGCC
* * *
69925412 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
69925439 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
69925466 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
69925494 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
69925521 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
69925548 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
69925575 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69925590 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:69925505 original size:55 final size:55
Alignment explanation
Indices: 69925412--69925589 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
69925402 ATATTGAGCC
* * *
69925412 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
69925466 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
69925521 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
69925575 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69925590 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:69925551 original size:82 final size:81
Alignment explanation
Indices: 69925433--69925588 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
69925423 TGCTATACAA
* * *
69925433 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
69925498 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
69925515 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
69925579 CACTTAGTGC
65 CACTTAGTGC
69925589 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69964988 original size:51 final size:52
Alignment explanation
Indices: 69964752--69965008 Score: 204
Period size: 53 Copynumber: 4.9 Consensus size: 52
69964742 GTGGAAGGAT
* * * * *
69964752 CATATCGTGTAAAATCA-TAACTGGTAGGTTACGCA-ATCATATGAAAAGAAGAT
1 CATATCATGTAAGA-CAGTAACTGGTAGG-TATG-ATATCATATGGAAAGAAGAC
* * **
69964805 CATATCATGTAAGACCA-TAATTGGTGGGTTATGGCATCATATGGAAAGAAGAC
1 CATATCATGTAAGA-CAGTAACTGGTAGG-TATGATATCATATGGAAAGAAGAC
* * * *
69964858 CGTATCATGTATGACAGTAACTGGTGGGTTAT-ATCATCATATGGAAAGAAGTC
1 CATATCATGTAAGACAGTAACTGGTAGG-TATGAT-ATCATATGGAAAGAAGAC
* * * *
69964911 CATATCGTGTAAGACTGTAA-TAGGTAGG-ATGATATTATATAGAAAGAAGAC
1 CATATCATGTAAGACAGTAACT-GGTAGGTATGATATCATATGGAAAGAAGAC
**
69964962 CATATCATGTAAGATC-GTAACTGGTAGGTTATGGCATCATATGGAAA
1 CATATCATGTAAGA-CAGTAACTGGTAGG-TATGATATCATATGGAAA
69965009 AATTTAAGGA
Statistics
Matches: 167, Mismatches: 28, Indels: 18
0.78 0.13 0.08
Matches are distributed among these distances:
51 40 0.24
52 7 0.04
53 120 0.72
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (52 bp):
CATATCATGTAAGACAGTAACTGGTAGGTATGATATCATATGGAAAGAAGAC
Found at i:69964992 original size:104 final size:105
Alignment explanation
Indices: 69964752--69965008 Score: 279
Period size: 106 Copynumber: 2.4 Consensus size: 105
69964742 GTGGAAGGAT
* * * * *
69964752 CATATCGTGTAAAATCATAACTGGTAGGTTA-CGCAATCATATGAAAAGAAGATCATATCATGTA
1 CATATCATGTAAGATCGTAACTGGTAGGTTATAGC-ATCATATGGAAAGAAGATCATATCATGTA
* * * *
69964816 AGACCATAATTGGTGGGTTATGGCATCATATGGAAAGAAGAC
65 AGACCATAATAGGTAGG-TATGACATCATATAGAAAGAAGAC
* * * * *
69964858 CGTATCATGTATGA-CAGTAACTGGTGGGTTATATCATCATATGGAAAGAAG-TCCATATCGTGT
1 CATATCATGTAAGATC-GTAACTGGTAGGTTATAGCATCATATGGAAAGAAGAT-CATATCATGT
** * *
69964921 AAGACTGTAATAGGTAGG-ATGATATTATATAGAAAGAAGAC
64 AAGACCATAATAGGTAGGTATGACATCATATAGAAAGAAGAC
*
69964962 CATATCATGTAAGATCGTAACTGGTAGGTTATGGCATCATATGGAAA
1 CATATCATGTAAGATCGTAACTGGTAGGTTATAGCATCATATGGAAA
69965009 AATTTAAGGA
Statistics
Matches: 124, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
104 59 0.48
105 3 0.02
106 61 0.49
107 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (105 bp):
CATATCATGTAAGATCGTAACTGGTAGGTTATAGCATCATATGGAAAGAAGATCATATCATGTAA
GACCATAATAGGTAGGTATGACATCATATAGAAAGAAGAC
Found at i:69969161 original size:66 final size:66
Alignment explanation
Indices: 69969084--69969212 Score: 240
Period size: 66 Copynumber: 2.0 Consensus size: 66
69969074 CAAGTTTACC
* *
69969084 TAGCAAAACATTAACTAATGGTATTCCTTAGACGAAACAAAACAATCCTCCCTTTTAGTTTTTAA
1 TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTTTACTTTTTAA
69969149 A
66 A
69969150 TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTTTACTTTTT
1 TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTTTACTTTTT
69969213 TAGATAAAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (66 bp):
TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTTTACTTTTTAA
A
Found at i:69970852 original size:20 final size:21
Alignment explanation
Indices: 69970827--69970876 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
69970817 TATTCAATTT
69970827 ATATTTTAT-TTTATATATAA
1 ATATTTTATATTTATATATAA
* * *
69970847 ATATTTGTTTATTTATATTTAT
1 ATATTT-TATATTTATATATAA
69970869 ATATTTTA
1 ATATTTTA
69970877 CTCATTATCG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 6 0.25
21 3 0.12
22 15 0.62
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
ATATTTTATATTTATATATAA
Found at i:69970864 original size:22 final size:23
Alignment explanation
Indices: 69970831--69970874 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
69970821 CAATTTATAT
69970831 TTTATTTTATATATAAATATTTG
1 TTTATTTTATATATAAATATTTG
* *
69970854 TTTA-TTTATATTTATATATTT
1 TTTATTTTATATATAAATATTT
69970875 TACTCATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTATTTTATATATAAATATTTG
Found at i:69970873 original size:14 final size:14
Alignment explanation
Indices: 69970823--69970874 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
69970813 AAACTATTCA
69970823 ATTTATAT-TTTAT
1 ATTTATATATTTAT
**
69970836 -TTTATATATAAAT
1 ATTTATATATTTAT
* *
69970849 ATTTGTTTATTTAT
1 ATTTATATATTTAT
69970863 ATTTATATATTT
1 ATTTATATATTT
69970875 TACTCATTAT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
12 7 0.24
13 3 0.10
14 19 0.66
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
ATTTATATATTTAT
Found at i:69972876 original size:19 final size:20
Alignment explanation
Indices: 69972826--69972876 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 20
69972816 CATAACTTTT
* *
69972826 TTTTTAAATTTTGTTTATAA
1 TTTTTAAAATTTGTTAATAA
* **
69972846 ATTTTATGATTT-TTAATAA
1 TTTTTAAAATTTGTTAATAA
69972865 TTTTTAAAATTT
1 TTTTTAAAATTT
69972877 AAAAGGGATT
Statistics
Matches: 23, Mismatches: 8, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (20 bp):
TTTTTAAAATTTGTTAATAA
Found at i:69977303 original size:49 final size:50
Alignment explanation
Indices: 69977242--69977473 Score: 254
Period size: 49 Copynumber: 4.7 Consensus size: 50
69977232 TGAGGTCATG
* * * *
69977242 TGTGTAGTACTAAGTGAAGACTACTATGTGTACTGGATTATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTAGGTCACA
* * ** * * *
69977291 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAA-TTAGGTCACA
* * ** *
69977342 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-GGATAATTAGGTCACA
*
69977392 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTAGGTCACA
* *
69977441 TTTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
69977474 AAGATAGCTT
Statistics
Matches: 153, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
49 70 0.46
50 46 0.30
51 37 0.24
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTAGGTCACA
Found at i:69977431 original size:101 final size:98
Alignment explanation
Indices: 69977241--69977466 Score: 265
Period size: 101 Copynumber: 2.3 Consensus size: 98
69977231 GTGAGGTCAT
* * * * * *
69977241 GTGTGTAGTACTAAGTGAAGACTACTATGTGTACTGGATTATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGATTGGTCACATGTGTAGTACTAAGT
*
69977306 GTAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTATGCGTACCCGATAA-TT-GATCAC
* *
69977341 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATGATT-GGTCACATGTGTAGTACTAA
* ** * *
69977405 GTGCAGGCTACTATGTGTACTGGATAATTGGTCGC
64 GTGCAGGCTACTATGCGTACCCGATAATTGATCAC
* *
69977440 ATTTGTAGTACTAAGTGCAGGCTACTA
1 GTGTGTAGTACTAAGTGCAGGCTACTA
69977467 TGCGTACAAG
Statistics
Matches: 108, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
99 30 0.28
100 37 0.34
101 41 0.38
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (98 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCCGATAATTGATCAC
Found at i:69979558 original size:30 final size:30
Alignment explanation
Indices: 69979524--69979584 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
69979514 TTCCCGAGCC
69979524 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
69979554 TAGGGGCAAAATTGTAATTTTGCTAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
69979584 T
1 T
69979585 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:69980407 original size:64 final size:64
Alignment explanation
Indices: 69980322--69980464 Score: 250
Period size: 64 Copynumber: 2.2 Consensus size: 64
69980312 CATTATGATG
*
69980322 TAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATATATA
1 TAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATA
* *
69980386 TAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATG
1 TAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATA
*
69980450 TAGCTAGGTCACATG
1 TAGCTAGGTCGCATG
69980465 CGTGGTTCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 75 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (64 bp):
TAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATA
Found at i:69980506 original size:67 final size:64
Alignment explanation
Indices: 69980245--69980543 Score: 235
Period size: 64 Copynumber: 4.6 Consensus size: 64
69980235 GGATGATACA
** * ** * *
69980245 GATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACA
1 GATA-TATGTAGCTAGGTCACATGGGTGGTACCAAGTGGACACCATGTAG-ACAAGAGAGCTAC-
*
69980309 AGA
63 -GG
* * * * * * * *
69980312 CATTATGATGTAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTATG
1 GA-TAT-ATGTAGCTAGGTCACATGGGTGGTACCAAGTGGACACCATGTAGACAAGAGAGCTACG
69980377 G
64 G
* * * * * *
69980378 GATATATATAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGG
1 GATATATGTAGCTAGGTCACATGGGTGGTACCAAGTGGACACCATGTAGACAAGAGAGCTACGG
* * *
69980442 GATATATGTAGCTAGGTCACATGCGTGGTTCCAAGTGAAAGACACTATGTAGACAAGAGAGCTAC
1 GATATATGTAGCTAGGTCACATGGGTGGTACCAAGTG---GACACCATGTAGACAAGAGAGCTAC
*
69980507 GA
63 GG
* *
69980509 GATAAACTG--GCTAGGTCACATGGGTGGTACTAAGT
1 GATATA-TGTAGCTAGGTCACATGGGTGGTACCAAGT
69980544 ATTCACAATG
Statistics
Matches: 196, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
64 86 0.44
65 3 0.02
66 25 0.13
67 31 0.16
68 50 0.26
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.25
Consensus pattern (64 bp):
GATATATGTAGCTAGGTCACATGGGTGGTACCAAGTGGACACCATGTAGACAAGAGAGCTACGG
Found at i:69983967 original size:40 final size:41
Alignment explanation
Indices: 69983930--69984155 Score: 288
Period size: 40 Copynumber: 5.7 Consensus size: 41
69983920 GCTACTCGTT
*
69983930 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
* *
69983970 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
69984010 CAAATGCCTTC-GAATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
69984050 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
69984090 CGAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
69984131 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
69984156 CATCATTCGA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.01
40 155 0.92
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:69990518 original size:37 final size:37
Alignment explanation
Indices: 69990454--69990529 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
69990444 TTACAAGACA
69990454 AAATCATTATAAGCCATATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCATATCTCATGGCTA-ATCACAAC
*
69990491 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCATAT-C-TCATGGCTAATCACAAC
69990528 AA
1 AA
69990530 CATTGATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCATATCTCATGGCTAATCACAAC
Found at i:70012700 original size:20 final size:21
Alignment explanation
Indices: 70012675--70012720 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
70012665 TGTTTGATGT
70012675 GTGATAAACATATTTTACT-A
1 GTGATAAACATATTTTACTAA
70012695 GTGATAAACATATTTTACTAA
1 GTGATAAACATATTTTACTAA
70012716 GTGAT
1 GTGAT
70012721 TTTTAGTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (21 bp):
GTGATAAACATATTTTACTAA
Found at i:70013401 original size:45 final size:45
Alignment explanation
Indices: 70013350--70013435 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
70013340 ATGTAATCTA
70013350 AACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCCG
1 AACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCCG
* *
70013395 AACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 AACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACA
70013436 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (45 bp):
AACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCCG
Found at i:70017517 original size:13 final size:13
Alignment explanation
Indices: 70017499--70017523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70017489 TCATGCATCA
70017499 CATACATTTAGGT
1 CATACATTTAGGT
70017512 CATACATTTAGG
1 CATACATTTAGG
70017524 GGTCTAGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
CATACATTTAGGT
Found at i:70018703 original size:17 final size:16
Alignment explanation
Indices: 70018683--70018714 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
70018673 CTTAGTGTCA
70018683 TACTCTTCTACCATTTT
1 TACTCTTCTA-CATTTT
70018700 TACTCTTCTACATTT
1 TACTCTTCTACATTT
70018715 CTGCTCCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.19, C:0.28, G:0.00, T:0.53
Consensus pattern (16 bp):
TACTCTTCTACATTTT
Found at i:70025694 original size:6 final size:6
Alignment explanation
Indices: 70025683--70025709 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
70025673 TTCTCCAAAT
70025683 TGAAAA TGAAAA TGAAAA TGAAAA TGA
1 TGAAAA TGAAAA TGAAAA TGAAAA TGA
70025710 CCTGAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.19, T:0.19
Consensus pattern (6 bp):
TGAAAA
Found at i:70025877 original size:197 final size:197
Alignment explanation
Indices: 70025542--70025937 Score: 783
Period size: 197 Copynumber: 2.0 Consensus size: 197
70025532 GAGCCTTAAC
*
70025542 TACATATGTCCAATCGGTCTTTCTACTAGCTTATTGAAACCAGAAATGAATTGCATGTTGAATCA
1 TACATATGTCCAATCGGTCCTTCTACTAGCTTATTGAAACCAGAAATGAATTGCATGTTGAATCA
70025607 AATGAGTAGAAATGAATAGAAATGATGAAATAGAGAAGTATGAATCATTTAGAAATGAATGTGGT
66 AATGAGTAGAAATGAATAGAAATGATGAAATAGAGAAGTATGAATCATTTAGAAATGAATGTGGT
70025672 TTTCTCCAAATTGAAAATGAAAATGAAAATGAAAATGACCTGAAAAATAAATTTATGTTTTTCGA
131 TTTCTCCAAATTGAAAATGAAAATGAAAATGAAAATGACCTGAAAAATAAATTTATGTTTTTCGA
70025737 AT
196 AT
70025739 TACATATGTCCAATCGGTCCTTCTACTAGCTTATTGAAACCAGAAATGAATTGCATGTTGAATCA
1 TACATATGTCCAATCGGTCCTTCTACTAGCTTATTGAAACCAGAAATGAATTGCATGTTGAATCA
70025804 AATGAGTAGAAATGAATAGAAATGATGAAATAGAGAAGTATGAATCATTTAGAAATGAATGTGGT
66 AATGAGTAGAAATGAATAGAAATGATGAAATAGAGAAGTATGAATCATTTAGAAATGAATGTGGT
70025869 TTTCTCCAAATTGAAAATGAAAATGAAAATGAAAATGACCTGAAAAATAAATTTATGTTTTTCGA
131 TTTCTCCAAATTGAAAATGAAAATGAAAATGAAAATGACCTGAAAAATAAATTTATGTTTTTCGA
70025934 AT
196 AT
70025936 TA
1 TA
70025938 AATTAAGTTT
Statistics
Matches: 198, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
197 198 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (197 bp):
TACATATGTCCAATCGGTCCTTCTACTAGCTTATTGAAACCAGAAATGAATTGCATGTTGAATCA
AATGAGTAGAAATGAATAGAAATGATGAAATAGAGAAGTATGAATCATTTAGAAATGAATGTGGT
TTTCTCCAAATTGAAAATGAAAATGAAAATGAAAATGACCTGAAAAATAAATTTATGTTTTTCGA
AT
Found at i:70025891 original size:6 final size:6
Alignment explanation
Indices: 70025880--70025906 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
70025870 TTCTCCAAAT
70025880 TGAAAA TGAAAA TGAAAA TGAAAA TGA
1 TGAAAA TGAAAA TGAAAA TGAAAA TGA
70025907 CCTGAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.19, T:0.19
Consensus pattern (6 bp):
TGAAAA
Found at i:70026801 original size:20 final size:19
Alignment explanation
Indices: 70026759--70026818 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
70026749 GTTCAACCAG
*
70026759 TTTTTGGTCTCAGTCTCAG
1 TTTTTGGTCTCAGTCTCAA
70026778 TTTTTGGTTCTCAGT-TCCAA
1 TTTTTGG-TCTCAGTCT-CAA
*
70026798 TTTTTGATCTCAAGT-TCAA
1 TTTTTGGTCTC-AGTCTCAA
70026817 TT
1 TT
70026819 ACCCATTGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
19 17 0.47
20 19 0.53
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (19 bp):
TTTTTGGTCTCAGTCTCAA
Found at i:70029308 original size:12 final size:12
Alignment explanation
Indices: 70029291--70029320 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
70029281 CCTCCCACGC
70029291 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
70029303 CCGTGTGTTAGG
1 CCGTGTGCTAGG
70029315 CCGTGT
1 CCGTGT
70029321 CAAACCTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:70034066 original size:21 final size:20
Alignment explanation
Indices: 70034032--70034070 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
70034022 AAACTTTTAT
70034032 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
* *
70034053 ATCTATTAAGAAACTTCA
1 ATCTATCAACAAACTTCA
70034071 AAATATGCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.31
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:70045235 original size:93 final size:93
Alignment explanation
Indices: 70045076--70045247 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
70045066 GCCCATAAGT
* * *
70045076 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
70045141 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
70045169 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
70045234 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
70045248 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70045243 original size:46 final size:46
Alignment explanation
Indices: 70045068--70045243 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
70045058 TGTAACCCGC
* * * *
70045068 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
70045114 CCATGAGTGAACTCGGAATCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
70045164 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
70045207 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70045244 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:70045262 original size:46 final size:46
Alignment explanation
Indices: 70045119--70045262 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 46
70045109 CGCATCCATG
* * * *
70045119 AGTGAACTCGGAATCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
70045167 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
70045212 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
70045258 AGTGA
1 AGTGA
70045263 CATGTCACTC
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.45
47 28 0.37
48 5 0.07
50 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:70049603 original size:14 final size:13
Alignment explanation
Indices: 70049584--70049622 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
70049574 GATATTTGAC
*
70049584 ATATAAAAAATTAT
1 ATATAAAAAA-AAT
70049598 ATATAAAGAAAAAT
1 ATATAAA-AAAAAT
70049612 ATATAAAAAAA
1 ATATAAAAAAA
70049623 TTAGTTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 16 0.70
15 3 0.13
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (13 bp):
ATATAAAAAAAAT
Found at i:70051533 original size:48 final size:48
Alignment explanation
Indices: 70051452--70051638 Score: 277
Period size: 48 Copynumber: 3.9 Consensus size: 48
70051442 CACAGTGGTT
*
70051452 TATGTGAGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCGTTGA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
* * *
70051500 TATGTGAG-TCAGTGTAAGACCCTGTCTGAGACATGGCATCGACGTTGA
1 TATGTGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
* *
70051548 TATGTGAGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGGCGTTGA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
* * *
70051596 TATATGTGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGC
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
70051639 ACTGACATGA
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 1 0.01
48 122 0.99
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
Found at i:70051680 original size:96 final size:96
Alignment explanation
Indices: 70051479--70051684 Score: 229
Period size: 96 Copynumber: 2.1 Consensus size: 96
70051469 GACCATGTAT
* * * *
70051479 GGGACATGGCATCGGCGTTGATATGTGAGTCAGTGTAAGACCCTGTCTGAGACATGGCATCGACG
1 GGGACATGGCATCGGCGTTGATATATGAGTCAGTGTAAGACCATGTCCGAGACATGGCATCGACA
* * * * * * *
70051544 TTGATATGTGAGCCAGTGTAAGGCCATGTCT
66 CTGACATGAGAGCCAGTATAAGACCATATCC
* * *
70051575 GGGACATGGCATCGGCGTTGATATATGTG-CTAGTGTAAGACCATGTCCGGGACATGGCATCGGC
1 GGGACATGGCATCGGCGTTGATATATGAGTC-AGTGTAAGACCATGTCCGAGACATGGCATCGAC
70051639 ACTGACATGAGA-CTTCA-TATAAGACCATATCC
65 ACTGACATGAGAGC--CAGTATAAGACCATATCC
*
70051671 GGGATATGGCATCG
1 GGGACATGGCATCG
70051685 ATATGTGGAT
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
95 2 0.02
96 88 0.96
97 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (96 bp):
GGGACATGGCATCGGCGTTGATATATGAGTCAGTGTAAGACCATGTCCGAGACATGGCATCGACA
CTGACATGAGAGCCAGTATAAGACCATATCC
Found at i:70053091 original size:37 final size:37
Alignment explanation
Indices: 70053041--70053119 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70053031 TTATTACGAA
* * *
70053041 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70053078 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70053115 GTCTT
1 GTCTT
70053120 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70053415 original size:49 final size:48
Alignment explanation
Indices: 70053238--70053656 Score: 625
Period size: 49 Copynumber: 8.8 Consensus size: 48
70053228 CCCTTCGGGA
* * * * *
70053238 CTTATCACAT-TTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70053285 CCTGTCACATA-TATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70053332 CGTATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
70053379 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATA-TTATACACTTTCACATTCATCACATCGGCCATTAGGC
70053428 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70053477 CTTATCACATA-TATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
70053524 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70053573 CTTATCACATATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70053622 CTTATCTCATA-TATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATTATACACT-TTCACATTCATCACAT
70053657 AGAATCCTAA
Statistics
Matches: 348, Mismatches: 17, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
46 1 0.00
47 159 0.46
48 1 0.00
49 187 0.54
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (48 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70053435 original size:96 final size:94
Alignment explanation
Indices: 70053238--70053656 Score: 624
Period size: 96 Copynumber: 4.4 Consensus size: 94
70053228 CCCTTCGGGA
* * * * * * * *
70053238 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
70053303 TTTTACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
70053332 CGTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATTTATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA--TATAC
70053397 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
70053428 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
70053493 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
70053524 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-
70053589 GCACTTTCACATTCATCACATCGGCCATTAGGC
63 -CACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70053622 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
70053657 AGAATCCTAA
Statistics
Matches: 302, Mismatches: 16, Indels: 12
0.92 0.05 0.04
Matches are distributed among these distances:
94 49 0.16
95 1 0.00
96 164 0.54
98 88 0.29
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:70053507 original size:145 final size:145
Alignment explanation
Indices: 70053238--70053656 Score: 659
Period size: 145 Copynumber: 2.9 Consensus size: 145
70053228 CCCTTCGGGA
* * * * * * *
70053238 CTTATCAC--ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATAT
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
70053299 ACACTTTTACATTCATCACATCGGCCATTAGGCCGTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
70053364 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
70053379 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
70053444 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
*
70053509 CATCGGCTATTAGGC
131 CATCGGCCATTAGGC
*
70053524 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * * *
70053589 GCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-TGTTCACATCCATC
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATC
70053653 ACAT
130 ACAT
70053657 AGAATCCTAA
Statistics
Matches: 258, Mismatches: 15, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
141 8 0.03
143 40 0.16
144 1 0.00
145 209 0.81
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (145 bp):
CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:70056888 original size:21 final size:21
Alignment explanation
Indices: 70056851--70056890 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
70056841 AATCATTAAA
*
70056851 TTGATGTTATGATATGTGTCT
1 TTGATGTTATGAAATGTGTCT
70056872 TTGATGTGTAT-AAATGTGT
1 TTGATGT-TATGAAATGTGT
70056891 GAGTGGTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.23, C:0.03, G:0.25, T:0.50
Consensus pattern (21 bp):
TTGATGTTATGAAATGTGTCT
Found at i:70062210 original size:22 final size:24
Alignment explanation
Indices: 70062166--70062210 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
70062156 AATGACAATC
*
70062166 AAAACACACTTTACAAGTTATATT
1 AAAACACACTTTACAAGTCATATT
*
70062190 AAAACTCA-TTTA-AAGTCATAT
1 AAAACACACTTTACAAGTCATAT
70062211 AAAGTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 4 0.21
24 7 0.37
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (24 bp):
AAAACACACTTTACAAGTCATATT
Found at i:70064546 original size:40 final size:40
Alignment explanation
Indices: 70064472--70064695 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
70064462 GCTACTCGTT
*
70064472 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70064511 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
70064551 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
70064591 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
70064630 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70064671 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70064696 CATCATTCGA
Statistics
Matches: 164, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 43 0.26
40 106 0.65
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70064611 original size:119 final size:119
Alignment explanation
Indices: 70064474--70064695 Score: 297
Period size: 119 Copynumber: 1.9 Consensus size: 119
70064464 TACTCGTTCA
*
70064474 AATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGACATAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
70064537 TTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
64 TATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
70064593 AATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 AATGCCTTCGGACATAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
* * *
70064658 TGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
66 TAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
70064696 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 77 0.87
120 9 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGACATAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:70064614 original size:79 final size:79
Alignment explanation
Indices: 70064472--70064695 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 79
70064462 GCTACTCGTT
* * *
70064472 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
*
70064536 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
*
70064551 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
*
70064615 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * * *
70064630 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCCG
70064694 GA
64 GA
70064696 CATCATTCGA
Statistics
Matches: 127, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 3 0.02
79 71 0.56
80 51 0.40
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:70065879 original size:56 final size:56
Alignment explanation
Indices: 70065812--70065931 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
70065802 TATTAGTTTA
70065812 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
70065868 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
70065924 TTGCCCAT
1 TTGCCCAT
70065932 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:70072473 original size:40 final size:39
Alignment explanation
Indices: 70072399--70072661 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 39
70072389 GCTACTCGTT
*
70072399 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70072438 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
*
70072478 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* * *
70072518 CCAATGCCTTCGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* *
70072556 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
70072596 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70072637 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
70072662 CATCATTCGA
Statistics
Matches: 201, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
38 34 0.17
39 13 0.06
40 141 0.70
41 13 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70072581 original size:78 final size:78
Alignment explanation
Indices: 70072399--70072614 Score: 301
Period size: 78 Copynumber: 2.7 Consensus size: 78
70072389 GCTACTCGTT
* *
70072399 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGACTTAACCCAG
*
70072463 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * *
70072478 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGG-CTTAGCCCAGA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCAGA
70072542 ATTAGTAACTCGCA
65 ATTAGTAACTCGCA
* *
70072556 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTA
70072615 GTCCGGATAT
Statistics
Matches: 122, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
77 3 0.02
78 67 0.55
79 13 0.11
80 37 0.30
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCAGAA
TTAGTAACTCGCA
Done.