Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 223 of 325
Found at i:70072645 original size:118 final size:120
Alignment explanation
Indices: 70072426--70072658 Score: 314
Period size: 118 Copynumber: 2.0 Consensus size: 120
70072416 AGCCCGGTTA
70072426 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
* * *
70072491 GACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTC-GG-CTTAGCCCAGAAT
66 GACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCAGAAT
** *
70072544 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCACAAATGCCTTC-
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCG
** * *
70072607 GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCC
65 GGA-CTTAACCCGGATATAGTAAC-TAGCACCAAAGCCTTCGGGACTTAGCCC
70072659 GGACATCATT
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
117 6 0.06
118 80 0.80
119 6 0.06
120 8 0.08
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (120 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
GACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCAGAAT
Found at i:70105452 original size:11 final size:11
Alignment explanation
Indices: 70105416--70105471 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
70105406 CATGGTATGT
70105416 ATGATATGCAC
1 ATGATATGCAC
* *
70105427 ATGACATG--T
1 ATGATATGCAC
70105436 ATGATATGCAC
1 ATGATATGCAC
*
70105447 ATGATATG--T
1 ATGATATGCAC
70105456 ATGATATGCAC
1 ATGATATGCAC
70105467 ATGAT
1 ATGAT
70105472 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70105471 original size:20 final size:20
Alignment explanation
Indices: 70105405--70105471 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
70105395 ATTTTGATAA
*
70105405 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70105425 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70105445 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70105465 ACATGAT
1 ACATGAT
70105472 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70105549 original size:25 final size:24
Alignment explanation
Indices: 70105521--70105639 Score: 149
Period size: 23 Copynumber: 5.0 Consensus size: 24
70105511 AGGAAGTGTA
70105521 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
70105546 AAAGGGCTTATGCCCCAGTTA-AT
1 AAAGGGCTTATGCCCCAGTTATAT
70105569 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
70105592 AAAGGGCTT-TACCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
70105614 AAAAGAGGC-TAGGCCTCCAGTTATAT
1 -AAAG-GGCTTATGCC-CCAGTTATAT
70105640 GATAAAGCAG
Statistics
Matches: 85, Mismatches: 3, Indels: 11
0.86 0.03 0.11
Matches are distributed among these distances:
22 12 0.14
23 38 0.45
24 5 0.06
25 29 0.34
26 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:70105864 original size:31 final size:31
Alignment explanation
Indices: 70105829--70105891 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
70105819 CGTTTACAGT
70105829 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
70105860 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70105891 A
1 A
70105892 GTGTGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70106781 original size:14 final size:14
Alignment explanation
Indices: 70106759--70106793 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
70106749 TTTTCTGTTT
*
70106759 AAATCAAGAGTTCA
1 AAATAAAGAGTTCA
70106773 AAATAAAGAGTTCA
1 AAATAAAGAGTTCA
70106787 AAATAAA
1 AAATAAA
70106794 AGGGTTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20
Consensus pattern (14 bp):
AAATAAAGAGTTCA
Found at i:70113476 original size:15 final size:16
Alignment explanation
Indices: 70113454--70113496 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
70113444 CATGGTATGT
70113454 ATGATATGCATATG-AC
1 ATGATATGC-TATGCAC
70113470 ATG-TATGCTATGCAC
1 ATGATATGCTATGCAC
70113485 ATGATATG-TATG
1 ATGATATGCTATG
70113497 ATATGCACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.16
15 14 0.56
16 7 0.28
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGATATGCTATGCAC
Found at i:70113509 original size:20 final size:20
Alignment explanation
Indices: 70113443--70113509 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
70113433 ATTTTAGTAA
*
70113443 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* * *
70113463 ATATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
70113483 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70113503 ACATGAT
1 ACATGAT
70113510 GTATTCATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70113588 original size:25 final size:25
Alignment explanation
Indices: 70113560--70113711 Score: 199
Period size: 25 Copynumber: 6.2 Consensus size: 25
70113550 AGGAAGTGTA
70113560 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
70113585 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
70113610 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
70113634 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
70113658 AAAGGGCTT-TGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
*
70113680 AAAGAGGC-TAGGCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TATGAT
70113708 AAAG
1 AAAG
70113712 CAGCTATGCT
Statistics
Matches: 117, Mismatches: 2, Indels: 13
0.89 0.02 0.10
Matches are distributed among these distances:
22 5 0.04
23 18 0.15
24 37 0.32
25 49 0.42
26 3 0.03
28 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:70113642 original size:24 final size:24
Alignment explanation
Indices: 70113558--70113682 Score: 207
Period size: 25 Copynumber: 5.2 Consensus size: 24
70113548 GGAGGAAGTG
70113558 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
70113582 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
70113607 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
70113632 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
70113656 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
70113679 TAAA
1 TAAA
70113683 GAGGCTAGGC
Statistics
Matches: 98, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
23 16 0.16
24 34 0.35
25 48 0.49
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:70113655 original size:49 final size:48
Alignment explanation
Indices: 70113559--70113682 Score: 205
Period size: 49 Copynumber: 2.6 Consensus size: 48
70113549 GAGGAAGTGT
*
70113559 AAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATTA-AAAGGGCTTATGCCCCAGTTATG
*
70113608 ATAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 A-AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATG
70113657 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
70113683 GAGGCTAGGC
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
47 16 0.22
48 9 0.12
49 24 0.33
50 23 0.32
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATG
Found at i:70113699 original size:47 final size:48
Alignment explanation
Indices: 70113558--70113702 Score: 199
Period size: 47 Copynumber: 3.0 Consensus size: 48
70113548 GGAGGAAGTG
70113558 TAAAAGGGCTTATGCCCCAGTTATGATAAAG-GGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT--TAAAGAGGCTTATGCCCCAGTTAT
*
70113607 GATAAAGGGCTTATGCCCCAGTTATTAAA-AGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTATTAAAGA-GGCTTATGCCCCAGTTAT
*
70113656 TAAAAGGGCTT-TGCCCCAGTTATTAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAGAGGCTTATGCC-CCAGTTAT
70113703 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
46 5 0.06
47 27 0.31
48 14 0.16
49 20 0.23
50 22 0.25
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
TAAAAGGGCTTATGCCCCAGTTATTAAAGAGGCTTATGCCCCAGTTAT
Found at i:70113931 original size:31 final size:31
Alignment explanation
Indices: 70113896--70113958 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
70113886 CGTTTACAGT
*
70113896 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
**
70113927 AAAGGCTTCGACCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
70113958 A
1 A
70113959 GTGTGAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:70120777 original size:18 final size:18
Alignment explanation
Indices: 70120750--70120784 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70120740 CATCGATTTT
* *
70120750 TTTTTGTTAATTTAATTA
1 TTTTTATTAAGTTAATTA
70120768 TTTTTATTAAGTTAATT
1 TTTTTATTAAGTTAATT
70120785 TTATAATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (18 bp):
TTTTTATTAAGTTAATTA
Found at i:70121187 original size:61 final size:61
Alignment explanation
Indices: 70121116--70121232 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
70121106 ATTTTTAAAA
* * * * * * * **
70121116 TTTTAGAATCAAGACCAAATTTATAAATTGTGTAAACATTGAGGGTTAAATTTGTTGAAAT
1 TTTTAAAATCAACACCAAATTAAGAAAATGGGTAAACATTAAGGGCCAAATTTGTTGAAAT
*
70121177 TTTTAAAATCAACACTAAATTAAGAAAATGGGTAAACATTAAGGGCCAAATTTGTT
1 TTTTAAAATCAACACCAAATTAAGAAAATGGGTAAACATTAAGGGCCAAATTTGTT
70121233 ATTAGACCAA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.34
Consensus pattern (61 bp):
TTTTAAAATCAACACCAAATTAAGAAAATGGGTAAACATTAAGGGCCAAATTTGTTGAAAT
Found at i:70124976 original size:82 final size:82
Alignment explanation
Indices: 70124821--70124982 Score: 227
Period size: 82 Copynumber: 2.0 Consensus size: 82
70124811 ATTGTATGAG
* * *
70124821 AAATGTATGTTCGATTGTATAATAAGTCTGGTAATGCTCTGTAACCCTATTCTGGCAATGGATAC
1 AAATGTATGTTCGATTATATAATAAGTCTGGTAATGCTCTGTAACCCTATTCTGGCAACGAATAC
**
70124886 GGGTGAGGGGTGTTACT
66 GGCCGAGGGGTGTTACT
* * *
70124903 AAATGTATGTTCGATTATATAATAAGGT-TGGTAATGCTTTGTAACCCTATTTTGGCGACGAATA
1 AAATGTATGTTCGATTATATAATAA-GTCTGGTAATGCTCTGTAACCCTATTCTGGCAACGAATA
*
70124967 TGGCCGAGGGGTGTTA
65 CGGCCGAGGGGTGTTA
70124983 TATTTATTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
82 68 0.97
83 2 0.03
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (82 bp):
AAATGTATGTTCGATTATATAATAAGTCTGGTAATGCTCTGTAACCCTATTCTGGCAACGAATAC
GGCCGAGGGGTGTTACT
Found at i:70127638 original size:27 final size:27
Alignment explanation
Indices: 70127600--70127654 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
70127590 GTATCTGAAG
70127600 TTAGAAGTTTTTTTAGGATTAGTTGGC
1 TTAGAAGTTTTTTTAGGATTAGTTGGC
*
70127627 TTAGAAGTTTTTTTGGGATTAGTTGGC
1 TTAGAAGTTTTTTTAGGATTAGTTGGC
70127654 T
1 T
70127655 ATTATCGGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.04, G:0.27, T:0.49
Consensus pattern (27 bp):
TTAGAAGTTTTTTTAGGATTAGTTGGC
Found at i:70130120 original size:29 final size:28
Alignment explanation
Indices: 70130058--70130120 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
70130048 TTGCATGACT
* * * *
70130058 ATGAATGTGATTGGGCCTGATGGGCCAT
1 ATGAATGAGATTGGGCCTAAAGGGCCAA
70130086 ATGAATGAGATTGGGCCTAAAAGGGCCAA
1 ATGAATGAGATTGGGCCT-AAAGGGCCAA
70130115 ATGAAT
1 ATGAAT
70130121 AAGTATGGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.24
Consensus pattern (28 bp):
ATGAATGAGATTGGGCCTAAAGGGCCAA
Found at i:70137171 original size:21 final size:21
Alignment explanation
Indices: 70137137--70137176 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70137127 AATGGTCATG
*
70137137 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
**
70137158 GATGATTTGCGAGTCACTT
1 GATGATTTAAGAGTCACTT
70137177 GTGTTTAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:70137454 original size:16 final size:16
Alignment explanation
Indices: 70137433--70137468 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
70137423 GACAAATCTC
70137433 GAAATACCGAAAAGCT
1 GAAATACCGAAAAGCT
70137449 GAAATACCGAAAAGCT
1 GAAATACCGAAAAGCT
70137465 GAAA
1 GAAA
70137469 GTTTGGCTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.17, G:0.19, T:0.11
Consensus pattern (16 bp):
GAAATACCGAAAAGCT
Found at i:70137713 original size:28 final size:28
Alignment explanation
Indices: 70137680--70137754 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
70137670 ATTGCATGAC
70137680 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
* *
70137708 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
**
70137736 TATGAATGAAATTGGGCCT
1 TATGAATGTGATTGGGCCT
70137755 AAAGGGGCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGACGGGCCA
Found at i:70139041 original size:18 final size:18
Alignment explanation
Indices: 70139020--70139054 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70139010 TTTAAGGAAG
*
70139020 GGTTTTCAATGAAAACAA
1 GGTTTTCAATAAAAACAA
*
70139038 GGTTTTCGATAAAAACA
1 GGTTTTCAATAAAAACA
70139055 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATAAAAACAA
Found at i:70143922 original size:17 final size:17
Alignment explanation
Indices: 70143900--70143935 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
70143890 CGAACAAACA
70143900 CTAAGGCACGTTCCTAG
1 CTAAGGCACGTTCCTAG
**
70143917 CTAAGGCGTGTTCCTAG
1 CTAAGGCACGTTCCTAG
70143934 CT
1 CT
70143936 TGGTCCCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.28, G:0.25, T:0.28
Consensus pattern (17 bp):
CTAAGGCACGTTCCTAG
Found at i:70153902 original size:20 final size:20
Alignment explanation
Indices: 70153877--70153924 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
70153867 ATCAATCCAA
* *
70153877 TATCGATACTTTTCTTAAGG
1 TATCGATACATTTCCTAAGG
70153897 TATCGATACATTTCCTAAGG
1 TATCGATACATTTCCTAAGG
70153917 TATCGATA
1 TATCGATA
70153925 TTCCTACTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (20 bp):
TATCGATACATTTCCTAAGG
Found at i:70156679 original size:47 final size:47
Alignment explanation
Indices: 70156618--70157108 Score: 829
Period size: 47 Copynumber: 10.4 Consensus size: 47
70156608 CAGCCAAGAC
70156618 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
70156665 AGTGTATATGTGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70156712 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70156759 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70156806 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70156855 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70156902 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70156949 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70156996 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
70157043 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
70157090 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
70157109 TCCCGAAGGG
Statistics
Matches: 421, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 374 0.89
49 47 0.11
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:70156945 original size:190 final size:188
Alignment explanation
Indices: 70156618--70157108 Score: 847
Period size: 190 Copynumber: 2.6 Consensus size: 188
70156608 CAGCCAAGAC
*
70156618 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
70156683 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
*
70156748 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
131 ATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70156806 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
70156871 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
64 AAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
70156936 TGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
129 TGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
70156996 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * * *
70157061 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
70157109 TCCCGAAGGG
Statistics
Matches: 287, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
188 103 0.36
190 184 0.64
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (188 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
ATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:70157033 original size:237 final size:235
Alignment explanation
Indices: 70156618--70157108 Score: 847
Period size: 237 Copynumber: 2.1 Consensus size: 235
70156608 CAGCCAAGAC
* *
70156618 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
70156683 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
70156748 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
* * * *
70156813 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
194 ATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAA
70156855 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
70156920 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
66 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
70156985 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
70157050 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
196 ATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAA
* *
70157090 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
70157109 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
235 53 0.22
237 188 0.78
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (235 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAA
Found at i:70157283 original size:37 final size:37
Alignment explanation
Indices: 70157227--70157305 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
70157217 CCGAGCTCTA
* *
70157227 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
70157264 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70157301 AAGAC
1 AAGAC
70157306 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70160727 original size:33 final size:33
Alignment explanation
Indices: 70160685--70160759 Score: 141
Period size: 33 Copynumber: 2.3 Consensus size: 33
70160675 GTGATTGCAC
70160685 CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
1 CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
70160718 CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
1 CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
*
70160751 CTTTATGTT
1 CTTAATGTT
70160760 TAATATCTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.20, C:0.07, G:0.23, T:0.51
Consensus pattern (33 bp):
CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
Found at i:70162186 original size:23 final size:21
Alignment explanation
Indices: 70162155--70162212 Score: 53
Period size: 23 Copynumber: 2.5 Consensus size: 21
70162145 TCCTTATATA
*
70162155 TTATTTTATAATTGTTTATAATT
1 TTATATTATAA-TG-TTATAATT
70162178 TTATATTATGTAATGTTATAATT
1 TTATATTA--TAATGTTATAATT
70162201 TTGATATATATA
1 TT-ATAT-TATA
70162213 TAAGATGATG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
23 19 0.63
24 6 0.20
25 5 0.17
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (21 bp):
TTATATTATAATGTTATAATT
Found at i:70163759 original size:49 final size:49
Alignment explanation
Indices: 70163698--70163828 Score: 183
Period size: 49 Copynumber: 2.7 Consensus size: 49
70163688 TACTGTCTGT
* *
70163698 CAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATAAAAGC
* * * *
70163747 CAGTGTAAGACCTGTCTGGGACATGGCATTGGCCTCGATATATAAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGC
*
70163796 CAGTGTAAGACCTGTCTGGGACACGGCATCGAC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC
70163829 TTTAATGTGC
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 1 0.01
49 71 0.99
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGC
Found at i:70163816 original size:142 final size:142
Alignment explanation
Indices: 70163557--70163870 Score: 370
Period size: 142 Copynumber: 2.2 Consensus size: 142
70163547 GTGGTATGTG
* * * ** *
70163557 AGCCAGAGTAAGACATGTCTGGGACAT-GCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGT
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGATGAGAGCCAGTGTAAGACATGT
* * *
70163621 ATGGGACATGCATCGGCCTCAGGATATACAAGCTAGTGTAAGACCTATCTGGGACATGGCGTCAA
66 ATGGGACATGCATCGGCCTCAGGATATAAAAGCTAGTGTAAGACCTATCTGGGACACGGCATCAA
*
70163686 C-TTACTGT-CT
131 CTTTAATGTGCT
* *
70163696 -GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACCT
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCG--AGATGAGAGCCAGTGTAAGACAT
* * * *
70163760 GTCTGGGACATGGCATTGGCCTC-GATATATAAAAG-TCAGTGTAAGACCTGTCTGGGACACGGC
64 GTATGGGACAT-GCATCGGCCTCAG-GATATAAAAGCT-AGTGTAAGACCTATCTGGGACACGGC
*
70163823 ATCGACTTTAATGTGCT
126 ATCAACTTTAATGTGCT
*
70163840 AGCCAGTGTAAGACCATGTTTGGGACATGGC
1 AGCCAGTGTAAGACC-TGTCTGGGACATGGC
70163871 GTCAGCATCT
Statistics
Matches: 146, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
138 23 0.16
139 9 0.06
141 33 0.23
142 46 0.32
143 6 0.04
144 2 0.01
145 13 0.09
146 14 0.10
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (142 bp):
AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGATGAGAGCCAGTGTAAGACATGT
ATGGGACATGCATCGGCCTCAGGATATAAAAGCTAGTGTAAGACCTATCTGGGACACGGCATCAA
CTTTAATGTGCT
Found at i:70170175 original size:9 final size:9
Alignment explanation
Indices: 70170161--70170186 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
70170151 AATTTTAGCA
70170161 TTTGTAAAG
1 TTTGTAAAG
70170170 TTTGTAAAG
1 TTTGTAAAG
70170179 TTTGTAAA
1 TTTGTAAA
70170187 ATGGATAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (9 bp):
TTTGTAAAG
Found at i:70173881 original size:18 final size:18
Alignment explanation
Indices: 70173858--70173892 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70173848 CCCTCGTCCT
* *
70173858 CTAAGGGAAAGCAGAAAG
1 CTAAGGCAAAGAAGAAAG
70173876 CTAAGGCAAAGAAGAAA
1 CTAAGGCAAAGAAGAAA
70173893 CTTACTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.11, G:0.29, T:0.06
Consensus pattern (18 bp):
CTAAGGCAAAGAAGAAAG
Found at i:70179500 original size:19 final size:20
Alignment explanation
Indices: 70179457--70179500 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
70179447 AATGGTTGAA
70179457 AGTATAGGGTTTTACCATGT
1 AGTATAGGGTTTTACCATGT
70179477 A-TATAGGGTTTTACCATG-
1 AGTATAGGGTTTTACCATGT
70179495 AGTATA
1 AGTATA
70179501 TTTATGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.04
19 21 0.91
20 1 0.04
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (20 bp):
AGTATAGGGTTTTACCATGT
Found at i:70180232 original size:46 final size:48
Alignment explanation
Indices: 70180121--70180286 Score: 156
Period size: 48 Copynumber: 3.5 Consensus size: 48
70180111 TATGTGATCC
* * * ** **** *
70180121 AGTGTAAAACATGTCTAGGACATGCATCGGCCTTAAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATCGACAAGCT
** *
70180169 AGTGTAAGACATGTCTGGGACATGCATCAGTGTTGAGA-CGA-AAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATCGACAAGCT
* * *
70180215 AGTGTAAGACATGTCTGGAACATGCATCAGCCTCGCGATGGACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATCGACAAGCT
* *
70180263 AGTGTAAGACTTGTTTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
70180287 GCGTCAACTT
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
46 37 0.38
47 2 0.02
48 58 0.60
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATCGACAAGCT
Found at i:70180286 original size:48 final size:46
Alignment explanation
Indices: 70180164--70180286 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
70180154 TAAGATATTT
* ** *
70180164 AAGCCAGTGTAAGACATGTCTGGGACATGCATCAGTGTTGAGACGA
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGA
* * *
70180210 AAGCTAGTGTAAGACATGTCTGGAACATGCATCAGCCTCGCGATGGA
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGA-CGA
* *
70180257 CAAGCTAGTGTAAGACTTGTTTGGGACATG
1 -AAGCTAGTGTAAGACATGTCTGGGACATG
70180287 GCGTCAACTT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 37 0.57
47 2 0.03
48 26 0.40
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
AAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGA
Found at i:70181547 original size:20 final size:21
Alignment explanation
Indices: 70181509--70181547 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
70181499 ACTTAGTGAT
70181509 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
*
70181530 CACATGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
70181548 GTTTCAAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:70183242 original size:37 final size:37
Alignment explanation
Indices: 70183192--70183270 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70183182 TTATTACGAA
* * *
70183192 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70183229 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70183266 GTCTT
1 GTCTT
70183271 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70183467 original size:47 final size:47
Alignment explanation
Indices: 70183389--70183600 Score: 343
Period size: 47 Copynumber: 4.5 Consensus size: 47
70183379 CCCTTCGGGA
* * * * * *
70183389 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70183436 CCTGTCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70183483 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70183530 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70183577 CTTATCACATATATACACTTTCAC
1 CTTATCACATATATACACTTTCAC
70183601 GTATACACAC
Statistics
Matches: 153, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 153 1.00
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70184967 original size:21 final size:21
Alignment explanation
Indices: 70184943--70184982 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
70184933 ACACATAAAT
*
70184943 TGCA-TACATTTTACTAACTAA
1 TGCATTACATATTA-TAACTAA
70184964 TGCATTACATATTATAACT
1 TGCATTACATATTATAACT
70184983 CAATACGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (21 bp):
TGCATTACATATTATAACTAA
Found at i:70186079 original size:46 final size:46
Alignment explanation
Indices: 70186012--70186103 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
70186002 TGTCCGTATG
70186012 ATTGTTTCGTTACTTTCCTATGAAAATATATTCAACAAGGTTCGTT
1 ATTGTTTCGTTACTTTCCTATGAAAATATATTCAACAAGGTTCGTT
*
70186058 ATTGTTTCGTTACTTTCCTATGAAAATATATTCATCAAGGTTCGTT
1 ATTGTTTCGTTACTTTCCTATGAAAATATATTCAACAAGGTTCGTT
70186104 TACATAATTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (46 bp):
ATTGTTTCGTTACTTTCCTATGAAAATATATTCAACAAGGTTCGTT
Found at i:70186974 original size:39 final size:40
Alignment explanation
Indices: 70186924--70187149 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
70186914 GCTACTCGTT
* *
70186924 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70186964 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
**
70187003 CAAATGCCTTCGGGACTTA-AACGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
70187042 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
70187081 CAAATGCCTTC-GGATCTTAGTCCGAGATATGGTCTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCG-GATTTAG--TAAC-TCGCA
70187125 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70187150 CATCATTCAA
Statistics
Matches: 159, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
38 6 0.04
39 92 0.58
40 28 0.18
41 4 0.03
42 2 0.01
43 16 0.10
44 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70194951 original size:40 final size:40
Alignment explanation
Indices: 70194914--70195135 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
70194904 GCTACTCGTT
*
70194914 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
70194954 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
70194994 CAAATGCCTTCGGGACTTA--CCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
70195032 CAAATGCCTTCGGG-CTTAGCCC-GAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
70195070 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70195111 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70195136 CATCATTCAA
Statistics
Matches: 160, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
37 6 0.04
38 58 0.36
39 9 0.06
40 74 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70195119 original size:116 final size:118
Alignment explanation
Indices: 70194914--70195128 Score: 285
Period size: 116 Copynumber: 1.8 Consensus size: 118
70194904 GCTACTCGTT
** *
70194914 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
70194979 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTACCGGATTTAGTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTACCGGATTTAGTAACTCGCA
* * **
70195032 CAAATGCCTTCGGG-CTTAGCCCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
70195094 GATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
65 GATATAGTAAC-TAGCACAAATGCCTTCGGGACTTA
70195129 GCCCGGACAT
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
115 3 0.04
116 50 0.60
117 17 0.20
118 14 0.17
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (118 bp):
CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTACCGGATTTAGTAACTCGCA
Found at i:70203484 original size:21 final size:22
Alignment explanation
Indices: 70203447--70203490 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
70203437 GAATTGAGGT
70203447 TGAATTGAAAATGATGA-GATA
1 TGAATTGAAAATGATGATGATA
*
70203468 TGAATTGAACTAT-ATGATGATA
1 TGAATTGAA-AATGATGATGATA
70203490 T
1 T
70203491 TGCAAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.34
Consensus pattern (22 bp):
TGAATTGAAAATGATGATGATA
Found at i:70207963 original size:29 final size:31
Alignment explanation
Indices: 70207931--70208009 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
70207921 ATGTTGATGA
*
70207931 TATTTTA-TAATTATTAATTAGATA-AATAT
1 TATTTTATTAATTATTAATAAGATATAATAT
* **
70207960 TATTTTATTAATATTTTAATAAGATATTTTAT
1 TATTTTATTAAT-TATTAATAAGATATAATAT
*
70207992 TATTTTATTATTTATTAA
1 TATTTTATTAATTATTAA
70208010 GTATAAAAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
29 7 0.17
30 4 0.10
31 16 0.39
32 14 0.34
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (31 bp):
TATTTTATTAATTATTAATAAGATATAATAT
Found at i:70227602 original size:46 final size:44
Alignment explanation
Indices: 70227512--70227627 Score: 117
Period size: 46 Copynumber: 2.6 Consensus size: 44
70227502 ATTGAGACAA
* * * *
70227512 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCAAGAT
1 GAGCCAGTGTAAGACATGTATGGGACATACATCAGCCTCAAGAT
* * *
70227556 GTAAGCCAGTGTAAGACATGTTTGGGACATACATC-GGCTACGAGAT
1 G--AGCCAGTGTAAGACATGTATGGGACATACATCAGCCT-CAAGAT
*
70227602 GAGCTAGTGTAAGACCATGTATGGGA
1 GAGCCAGTGTAAGA-CATGTATGGGA
70227628 TATGGCATTA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
44 13 0.22
45 13 0.22
46 34 0.57
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.23
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTATGGGACATACATCAGCCTCAAGAT
Found at i:70236758 original size:22 final size:21
Alignment explanation
Indices: 70236716--70236758 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
70236706 TATTATTTTA
*
70236716 ATTTAATTATATTTTTAGGTT
1 ATTTAATTATATTATTAGGTT
* *
70236737 ATTTTATTATTATTATTCGGTT
1 ATTTAATTA-TATTATTAGGTT
70236759 TTGGATTGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.26, C:0.02, G:0.09, T:0.63
Consensus pattern (21 bp):
ATTTAATTATATTATTAGGTT
Found at i:70241305 original size:47 final size:46
Alignment explanation
Indices: 70241204--70241513 Score: 217
Period size: 47 Copynumber: 6.7 Consensus size: 46
70241194 TACGCCTGCT
* * * * *
70241204 GATGCATGTCCCAAACATGTCTTACACTAGC-A-CAACTTTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATC-TCTGTGAGGCC
** * *
70241248 GATGTGTGTCCCAGACACGTATTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT-GAGGCC
* *
70241295 GATGCATGTCCCAGACATGTCTTACATTGGCACTCATCTCTGT---GTC
1 GATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTGAGGCC
* * *
70241341 GATGCCATGTCCTAGACATGGTCTTACACTGGCTATCAT-AGT-ATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTGA-GGCC
* ** *
70241389 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATC-TCTGTGAGGCC
* * * * *
70241435 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCT-TATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTCT-GTGAGGCC
*
70241483 GAAGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
70241514 GCACAAATCA
Statistics
Matches: 210, Mismatches: 37, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
44 25 0.12
45 9 0.04
46 46 0.22
47 84 0.40
48 36 0.17
49 2 0.01
50 8 0.04
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTGAGGCC
Found at i:70241398 original size:94 final size:93
Alignment explanation
Indices: 70241150--70241510 Score: 358
Period size: 94 Copynumber: 3.9 Consensus size: 93
70241140 TGGGATATAT
* * * *
70241150 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-TACGCCTGCTGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATG---GCCGATGCATGTC
* * *
70241214 CCAAACATGTCTTACACTAGCA--CAACTTT
63 CCAGACATGTCTTACACTAGCACTCATCTTG
** * * *
70241243 TAGCCGATG-TGTGTCCCAGACA-CGTATTACACTGGCTATC-TCTGTCGA-GGCCGATGCATGT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGT
* *
70241304 CCCAGACATGTCTTACATTGGCACTCATCTCTG
62 CCCAGACATGTCTTACACTAGCACTCATCT-TG
* * *
70241337 TGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
* * *
70241402 GACATGTCTTACACTAGCCCTCGTCTGG
66 GACATGTCTTACACTAGCACTCATCTTG
* * * * * *
70241430 ATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTTATAATGTGGCCGAAGCATGTCCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCC
70241495 AGACATGTCTTACACT
65 AGACATGTCTTACACT
70241511 GGCGCACAAA
Statistics
Matches: 220, Mismatches: 35, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
91 32 0.15
92 15 0.07
93 24 0.11
94 129 0.59
95 19 0.09
96 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCACTCATCTTG
Found at i:70246786 original size:40 final size:40
Alignment explanation
Indices: 70246716--70246928 Score: 297
Period size: 40 Copynumber: 5.3 Consensus size: 40
70246706 AAACCAAGTA
* * *
70246716 CCTTCGGGATTTAG-TCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
70246755 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70246795 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70246835 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
70246875 CCTTTGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70246915 CCTTCGGGACTTAG
1 CCTTCGGGACTTAG
70246929 ACCGATTATC
Statistics
Matches: 157, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.10
40 142 0.90
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70249319 original size:128 final size:128
Alignment explanation
Indices: 70249091--70249349 Score: 491
Period size: 128 Copynumber: 2.0 Consensus size: 128
70249081 TTCAACCTCT
70249091 GATGGACTAATTATGTACGAAGGATCAGATCTGTAACGTCGAAGCATCGAAACATGAAAAACGTT
1 GATGGACTAATTATGTACGAAGGATCAGATCTGTAACGTCGAAGCATCGAAACATGAAAAACGTT
*
70249156 GTGAATCCTTTCAAGTTCAGGGAGTAAAAGCAACCTATATGCAACTGGACCAACTCGTTCTGA
66 GTGAATCCTTTCAAGTTCAGGGAGTAAAAGCAACCTATATGCAACTGGACCAACTCGTTCGGA
*
70249219 GATGGACTAATTATGTGCGAAGGATCAGATCTGTAACGTCGAAGCATCGAAACATGAAAAACGTT
1 GATGGACTAATTATGTACGAAGGATCAGATCTGTAACGTCGAAGCATCGAAACATGAAAAACGTT
*
70249284 GTGAATCCTTTCAAGTTCAGGGGGTAAAAGCAACCTATATGCAACTGGACCAACTCGTTCGGA
66 GTGAATCCTTTCAAGTTCAGGGAGTAAAAGCAACCTATATGCAACTGGACCAACTCGTTCGGA
70249347 GAT
1 GAT
70249350 TTCATACGGC
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 128 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (128 bp):
GATGGACTAATTATGTACGAAGGATCAGATCTGTAACGTCGAAGCATCGAAACATGAAAAACGTT
GTGAATCCTTTCAAGTTCAGGGAGTAAAAGCAACCTATATGCAACTGGACCAACTCGTTCGGA
Found at i:70255218 original size:40 final size:39
Alignment explanation
Indices: 70255173--70255319 Score: 188
Period size: 40 Copynumber: 3.7 Consensus size: 39
70255163 TACTCACTCA
*
70255173 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCAC
*
70255212 AGATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCAC
1 A-ATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCAC
* * * *
70255252 AAATGCCTTCGGGGCTTAGCCCAG-AATTAGTCACTAGCAC
1 -AATGCCTTCGGGACTTAGCCCAGTTA-TAGTAACTCGCAC
*
70255292 AATTGCCTTCGGGACTTAGCCCGGTTAT
1 AA-TGCCTTCGGGACTTAGCCCAGTTAT
70255320 CATCCGAATA
Statistics
Matches: 94, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
39 4 0.04
40 88 0.94
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCAC
Found at i:70270718 original size:30 final size:30
Alignment explanation
Indices: 70270684--70270782 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
70270674 GTGTACTAGG
* *
70270684 CCGTGTGTCACACATAGTCATGACACACAC
1 CCGTGTGTCACACACAGTCATGACACACGC
*
70270714 CCGTGTGTCACACGCAGTCATGACACACGC
1 CCGTGTGTCACACACAGTCATGACACACGC
*
70270744 CCGTGTGTCACACACGGTCATGACACACGC
1 CCGTGTGTCACACACAGTCATGACACACGC
*
70270774 CCATGTGTC
1 CCGTGTGTC
70270783 TACCTATGTG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.24, C:0.35, G:0.21, T:0.19
Consensus pattern (30 bp):
CCGTGTGTCACACACAGTCATGACACACGC
Found at i:70271559 original size:14 final size:14
Alignment explanation
Indices: 70271540--70271568 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70271530 ATAGTTTCAA
70271540 AATAGTTCATCTCG
1 AATAGTTCATCTCG
70271554 AATAGTTCATCTCG
1 AATAGTTCATCTCG
70271568 A
1 A
70271569 GTACAGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (14 bp):
AATAGTTCATCTCG
Found at i:70272403 original size:17 final size:17
Alignment explanation
Indices: 70272383--70272422 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
70272373 TTTTTACCAT
**
70272383 TTATCATTTTTCGGGCA
1 TTATCATTGATCGGGCA
*
70272400 TTATCATTGATCGGGCT
1 TTATCATTGATCGGGCA
70272417 TTATCA
1 TTATCA
70272423 GATACATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.45
Consensus pattern (17 bp):
TTATCATTGATCGGGCA
Found at i:70278383 original size:40 final size:40
Alignment explanation
Indices: 70278106--70278369 Score: 308
Period size: 40 Copynumber: 6.6 Consensus size: 40
70278096 TGAATGATGT
* ** * *
70278106 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGCCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
70278146 CCGGACTAAGAT-CCGAAGGCATTTGCGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
70278185 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
70278226 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
70278264 TCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
70278305 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70278345 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70278370 AACGAGTAGC
Statistics
Matches: 198, Mismatches: 18, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
39 35 0.18
40 154 0.78
41 9 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70278383 original size:80 final size:80
Alignment explanation
Indices: 70278105--70278388 Score: 339
Period size: 80 Copynumber: 3.6 Consensus size: 80
70278095 TTGAATGATG
* ** * *
70278105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGCCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCAT
*
70278168 TTGCGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
*
70278185 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCAT
*
70278247 TGGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
* * *
70278264 TCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
70278329 GTGCGAGTTACTATAA
66 GTGCGAGTTACTA-AA
* **
70278345 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
70278389 TTAAATTCCG
Statistics
Matches: 177, Mismatches: 18, Indels: 18
0.83 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 71 0.40
80 95 0.54
81 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:70278391 original size:119 final size:118
Alignment explanation
Indices: 70278106--70278402 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
70278096 TGAATGATGT
* * * *
70278106 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGCCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAGCTATATCCGG-TTAAG-TCCGAAGGCATTT
*
70278170 GCGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATT
63 GCGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATA
* *
70278226 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
*
70278289 GTC-CGAGTTACTATAA-CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATAA
63 G-CGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-A
* ** *
70278345 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
70278403 TACGTGATTT
Statistics
Matches: 152, Mismatches: 14, Indels: 23
0.80 0.07 0.12
Matches are distributed among these distances:
118 4 0.03
119 99 0.65
120 49 0.32
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGCG
CGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:70314539 original size:27 final size:27
Alignment explanation
Indices: 70314508--70314561 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
70314498 GAGACTTTGA
70314508 CTAATAAACTGTACTAATTGGCCCGAC
1 CTAATAAACTGTACTAATTGGCCCGAC
70314535 CTAATAAACTGTACTAATTGGCCCGAC
1 CTAATAAACTGTACTAATTGGCCCGAC
70314562 AAAAATTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (27 bp):
CTAATAAACTGTACTAATTGGCCCGAC
Found at i:70315335 original size:43 final size:43
Alignment explanation
Indices: 70315287--70315389 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
70315277 TTGGTTTTCA
70315287 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
70315330 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
70315373 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
70315390 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:70315406 original size:29 final size:29
Alignment explanation
Indices: 70315371--70315444 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
70315361 GTTGTGAGAT
* *
70315371 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
70315400 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
70315429 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70315445 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:70319380 original size:47 final size:47
Alignment explanation
Indices: 70319322--70320094 Score: 1282
Period size: 47 Copynumber: 16.5 Consensus size: 47
70319312 ATTCAGCCAA
70319322 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
70319369 GAAAGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
70319414 GAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
70319461 GAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
70319510 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
70319557 GAAAGTGTATATGTGTGATAAGGCCTAAT-GCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
70319603 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
70319650 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
70319697 GAAAGTGTATATGTGTGGTAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
70319744 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
70319791 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
70319838 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
70319885 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
70319932 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
70319979 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
70320026 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
70320073 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
70320095 TCCCGAAGGG
Statistics
Matches: 693, Mismatches: 28, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
45 44 0.06
46 45 0.06
47 559 0.81
49 45 0.06
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:70320269 original size:37 final size:37
Alignment explanation
Indices: 70320213--70320291 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
70320203 CCGAGCTCTA
* * *
70320213 AAGACCTGATGACTACGTGTGG-GAATTTTGCCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGCCCGGGT
* *
70320250 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
70320287 AAGAC
1 AAGAC
70320292 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 35 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
Found at i:70331534 original size:26 final size:26
Alignment explanation
Indices: 70331484--70331535 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
70331474 ATATTTTTTA
*
70331484 TTAATTTAATTATTATTTTTAAAAAT
1 TTAATTTAATTATTATCTTTAAAAAT
70331510 TTAATTTAATCT-TTAATCTTTAAAAA
1 TTAATTTAAT-TATT-ATCTTTAAAAA
70331536 AGTCAAACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (26 bp):
TTAATTTAATTATTATCTTTAAAAAT
Found at i:70332332 original size:15 final size:15
Alignment explanation
Indices: 70332312--70332348 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
70332302 CTTGTGATAT
70332312 ACTTTATTATTATAA
1 ACTTTATTATTATAA
70332327 ACTTTATTATTATAA
1 ACTTTATTATTATAA
70332342 ACATTTA
1 AC-TTTA
70332349 AAATAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (15 bp):
ACTTTATTATTATAA
Found at i:70334206 original size:39 final size:39
Alignment explanation
Indices: 70334161--70334241 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
70334151 AAGCAAGACA
70334161 CTGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTCGTG
* *
70334200 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTCGTG
70334239 CTG
1 CTG
70334242 TAACATAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTCGTG
Found at i:70340862 original size:39 final size:39
Alignment explanation
Indices: 70340817--70340937 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
70340807 AAGCAAGACA
* * *
70340817 CTGGAAATGTATCCAGGCTAAAGTCCTGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
70340856 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
70340895 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
70340934 CTGG
1 CTGG
70340938 TAACATAATT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:70346800 original size:22 final size:24
Alignment explanation
Indices: 70346775--70346818 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
70346765 ATTTTGTTCA
70346775 ACTTTAACTT-TTAT-TCAAAAAC
1 ACTTTAACTTGTTATATCAAAAAC
*
70346797 ACTTTAATTTGTTATATCAAAA
1 ACTTTAACTTGTTATATCAAAA
70346819 CATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTGTTATATCAAAAAC
Found at i:70349836 original size:25 final size:26
Alignment explanation
Indices: 70349789--70349837 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
70349779 TTTTGTCACC
70349789 GCCACTATCAGTTGGACCACCATCGA
1 GCCACTATCAGTTGGACCACCATCGA
* * *
70349815 GCCACTGTC-GTTGGGCCGCCATC
1 GCCACTATCAGTTGGACCACCATC
70349838 TGCTTAACTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 12 0.60
26 8 0.40
ACGTcount: A:0.18, C:0.37, G:0.24, T:0.20
Consensus pattern (26 bp):
GCCACTATCAGTTGGACCACCATCGA
Found at i:70351122 original size:6 final size:6
Alignment explanation
Indices: 70351105--70351158 Score: 81
Period size: 6 Copynumber: 8.8 Consensus size: 6
70351095 CCAAATGAAT
* *
70351105 CATTTC TCATTTT CATTTT CATTTC CATTTC CATTTC CATTTC CATTTC
1 CATTTC -CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
70351154 CATTT
1 CATTT
70351159 TTTGAGAAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
6 40 0.89
7 5 0.11
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (6 bp):
CATTTC
Found at i:70352206 original size:27 final size:27
Alignment explanation
Indices: 70352176--70352231 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
70352166 GTGTTTTGTG
* *
70352176 ATCTTGACATCAACAATGGTAGCTTAA
1 ATCTTGACATAAAAAATGGTAGCTTAA
*
70352203 ATCTTGACATAAAAAATTGTAGCTTAA
1 ATCTTGACATAAAAAATGGTAGCTTAA
70352230 AT
1 AT
70352232 AATTTTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.32
Consensus pattern (27 bp):
ATCTTGACATAAAAAATGGTAGCTTAA
Found at i:70354850 original size:48 final size:47
Alignment explanation
Indices: 70354797--70354887 Score: 137
Period size: 48 Copynumber: 1.9 Consensus size: 47
70354787 AACACTCCAT
* * *
70354797 TTGTGGACAAGCCACCACATAATTTCCTATAAACGGCAACATAACATA
1 TTGTGGACAAACCACCACATAATTACCAAT-AACGGCAACATAACATA
*
70354845 TTGTGGACAAACCACCACATAATTACCAATAACGGCCACATAA
1 TTGTGGACAAACCACCACATAATTACCAATAACGGCAACATAA
70354888 TTGCAGATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 12 0.31
48 27 0.69
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.21
Consensus pattern (47 bp):
TTGTGGACAAACCACCACATAATTACCAATAACGGCAACATAACATA
Found at i:70356287 original size:16 final size:16
Alignment explanation
Indices: 70356259--70356294 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
70356249 TTATTTGTCA
70356259 AAAAAGGAGAGAAAATG
1 AAAAAGGAGAGAAAA-G
70356276 AAAAAGGA-AGAAAAG
1 AAAAAGGAGAGAAAAG
70356291 AAAA
1 AAAA
70356295 GAAAAGAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 6 0.32
17 8 0.42
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (16 bp):
AAAAAGGAGAGAAAAG
Found at i:70383434 original size:17 final size:19
Alignment explanation
Indices: 70383412--70383448 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
70383402 TTGAGCTTAT
70383412 TGGGCC-ACACGGG-CGTG
1 TGGGCCTACACGGGCCGTG
*
70383429 TGGGCCTACATGGGCCGTG
1 TGGGCCTACACGGGCCGTG
70383448 T
1 T
70383449 TATGGGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.11, C:0.27, G:0.43, T:0.19
Consensus pattern (19 bp):
TGGGCCTACACGGGCCGTG
Found at i:70386701 original size:21 final size:20
Alignment explanation
Indices: 70386675--70386747 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 20
70386665 ATAAATATAT
70386675 AATAATATAAACCATATAATA
1 AATAATATAAA-CATATAATA
*
70386696 AATAATATAAA-AAAT-ATA
1 AATAATATAAACATATAATA
*
70386714 TATAATA-AAACGTATATAATA
1 AATAATATAAAC--ATATAATA
70386735 TAATATATATAAA
1 -AATA-ATATAAA
70386748 AGAAAGAAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
17 3 0.07
18 9 0.22
19 3 0.07
20 3 0.07
21 14 0.34
22 3 0.07
23 3 0.07
24 3 0.07
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (20 bp):
AATAATATAAACATATAATA
Found at i:70386719 original size:39 final size:42
Alignment explanation
Indices: 70386648--70386748 Score: 124
Period size: 41 Copynumber: 2.5 Consensus size: 42
70386638 ATATATAGTG
*
70386648 TATAACATAAT-T-TATAAATAAATATATAATAATATAAAC-CA
1 TATAATATAATATATATAAA-AAATATATAATAATA-AAACGCA
*
70386689 TATAATA-AATA-ATATAAAAAATATAT-ATAATAAAACGTA
1 TATAATATAATATATATAAAAAATATATAATAATAAAACGCA
70386728 TATAATATAATATATATAAAA
1 TATAATATAATATATATAAAA
70386749 GAAAGAAAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
38 4 0.08
39 14 0.26
40 15 0.28
41 20 0.38
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (42 bp):
TATAATATAATATATATAAAAAATATATAATAATAAAACGCA
Found at i:70386852 original size:38 final size:36
Alignment explanation
Indices: 70386810--70386939 Score: 104
Period size: 37 Copynumber: 3.4 Consensus size: 36
70386800 AAATATGTAG
*
70386810 ATAAAATATAATATAATAAGGA-AATATAAAATAATAAT
1 ATAAAATATAATAAAATAA--ATAATATAAAATAA-AAT
* *
70386848 ATAAAAATATAGTAAAATAAATAATATATAATAAAAT
1 AT-AAAATATAATAAAATAAATAATATAAAATAAAAT
* * *
70386885 ATATAACATATAATAAAATATA-AATATAACAGAATAA-
1 ATA-AA-ATATAATAAAATAAATAATATAAAATAA-AAT
70386922 ATAATATATATAATAAAA
1 ATAA-A-ATATAATAAAA
70386940 ATATATGATA
Statistics
Matches: 77, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
36 2 0.03
37 32 0.42
38 28 0.36
39 15 0.19
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (36 bp):
ATAAAATATAATAAAATAAATAATATAAAATAAAAT
Found at i:70386887 original size:12 final size:12
Alignment explanation
Indices: 70386660--70386953 Score: 83
Period size: 12 Copynumber: 23.1 Consensus size: 12
70386650 TAACATAATT
70386660 TATA-AATAAATA
1 TATATAATAAA-A
70386672 TATAATAATATAAA
1 TAT-ATAATA-AAA
*
70386686 CCATATAAT-AAA
1 -TATATAATAAAA
*
70386698 TAATATAAAAAATA
1 T-ATATAATAAA-A
70386712 TATATAATAAAA
1 TATATAATAAAA
*
70386724 CGTATATAATATAA
1 --TATATAATAAAA
70386738 TATAT-ATAAAA
1 TATATAATAAAA
* *
70386749 GA-A-AGA-AAGA
1 TATATA-ATAAAA
70386759 TATTATAATGAATAA
1 TA-TATAAT-AA-AA
*
70386774 TATATAACAAAATA
1 TATATAA-TAAA-A
70386788 TAATATGTAATAAAA
1 T-ATA--TAATAAAA
*
70386803 TATGTAGATAAAA
1 TATATA-ATAAAA
70386816 TATA-ATATAATAA
1 TATATA-ATAA-AA
* *
70386829 GGAAAT-ATAAAA
1 -TATATAATAAAA
70386841 TA-ATAATATAAA
1 TATATAATA-AAA
* *
70386853 AATATAGTAAAA
1 TATATAATAAAA
*
70386865 TAAATAATATATAA
1 TATATAATA-A-AA
70386879 TA-A-AATATATAA
1 TATATAATA-A-AA
*
70386891 CATATAATAAAA
1 TATATAATAAAA
70386903 TATA-AATATAACA
1 TATATAATA-AA-A
* *
70386916 GA-ATAAATAATA
1 TATAT-AATAAAA
70386928 TATATAATAAAAA
1 TATATAAT-AAAA
*
70386941 TATATGATAAAA
1 TATATAATAAAA
70386953 T
1 T
70386954 TTTTTAAAAA
Statistics
Matches: 213, Mismatches: 30, Indels: 78
0.66 0.09 0.24
Matches are distributed among these distances:
10 7 0.03
11 15 0.07
12 70 0.33
13 53 0.25
14 50 0.23
15 12 0.06
16 3 0.01
17 3 0.01
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (12 bp):
TATATAATAAAA
Found at i:70386910 original size:54 final size:54
Alignment explanation
Indices: 70386814--70386945 Score: 144
Period size: 54 Copynumber: 2.4 Consensus size: 54
70386804 ATGTAGATAA
* **
70386814 AATATAATATAATAAGGAA-ATATAAAATAATAATATAAAAATATAGTAAAATAAAT
1 AATAT-ATATAATAA--AATATATAAAATAATAAAATAAAAATATAACAAAATAAAT
* *
70386870 -A-ATATATAATAAAATATATAACATATAATAAAATATAAATATAACAGAATAAAT
1 AATATATATAATAAAATATATAA-A-ATAATAAAATAAAAATATAACAAAATAAAT
70386924 AATATATATAATAAAAATATAT
1 AATATATATAAT-AAAATATAT
70386946 GATAAAATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
51 2 0.03
52 6 0.09
53 10 0.15
54 27 0.42
55 2 0.03
56 9 0.14
57 9 0.14
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (54 bp):
AATATATATAATAAAATATATAAAATAATAAAATAAAAATATAACAAAATAAAT
Found at i:70386932 original size:21 final size:22
Alignment explanation
Indices: 70386877--70386934 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 22
70386867 AATAATATAT
* *
70386877 AATAAAATATATAACATATAATA
1 AATAATATATATAACA-AGAATA
*
70386900 AA-ATATAAATATAAC-AGAATA
1 AATA-ATATATATAACAAGAATA
70386921 AATAATATATATAA
1 AATAATATATATAA
70386935 TAAAAATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
21 16 0.55
22 2 0.07
23 11 0.38
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (22 bp):
AATAATATATATAACAAGAATA
Found at i:70388680 original size:44 final size:44
Alignment explanation
Indices: 70388631--70388714 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
70388621 GCCATGTTGA
* *
70388631 TATCTTCGATCTGCTCTCTGACAAAACAGAGACCCCAAATTTGC
1 TATCTTCGATCTACTCCCTGACAAAACAGAGACCCCAAATTTGC
* * * *
70388675 TATCTTTGATCTACTCCCTGACAATATAGAGACTCCAAAT
1 TATCTTCGATCTACTCCCTGACAAAACAGAGACCCCAAAT
70388715 CATCTTATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (44 bp):
TATCTTCGATCTACTCCCTGACAAAACAGAGACCCCAAATTTGC
Found at i:70388958 original size:44 final size:44
Alignment explanation
Indices: 70388908--70389022 Score: 169
Period size: 44 Copynumber: 2.6 Consensus size: 44
70388898 TTCGATTTGT
*
70388908 TCTCTGACAATACAGAAACACCAAATCTACTATCTTTGATCTGC
1 TCTCTGACAATACAGAAACACCAAATCTACTATCTTTGATCTAC
* *
70388952 TCTCTGACAATACA-AAGACGCCAAATCTGCTATCTTTGATCTAC
1 TCTCTGACAATACAGAA-ACACCAAATCTACTATCTTTGATCTAC
* *
70388996 TCTCTAACAATACAGAGACACCAAATC
1 TCTCTGACAATACAGAAACACCAAATC
70389023 ATCTTAGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
43 2 0.03
44 60 0.95
45 1 0.02
ACGTcount: A:0.36, C:0.28, G:0.10, T:0.27
Consensus pattern (44 bp):
TCTCTGACAATACAGAAACACCAAATCTACTATCTTTGATCTAC
Found at i:70402054 original size:17 final size:16
Alignment explanation
Indices: 70402026--70402332 Score: 69
Period size: 15 Copynumber: 20.1 Consensus size: 16
70402016 ATAATTTATA
70402026 AATA-AAATATATAAT
1 AATATAAATATATAAT
*
70402041 AATATAAAT-CAT-AT
1 AATATAAATATATAAT
70402055 -A-ATAAATA-AT-AT
1 AATATAAATATATAAT
70402067 AATA-AAATATAT-AT
1 AATATAAATATATAAT
*
70402081 AATA-AAATGTAT-AT
1 AATATAAATATATAAT
*
70402095 AATATAATATATATAAA
1 AATATAA-ATATATAAT
*
70402112 AGAAAGTAAGATATTATAAT
1 A-ATA-TAA-ATA-TATAAT
* *
70402132 GA-AT-AATATATAAC
1 AATATAAATATATAAT
* *
70402146 AAAATATAATATGTAAT
1 AATATA-AATATATAAT
* ** *
70402163 AAAATATGTAGATAA-
1 AATATAAATATATAAT
*
70402178 AATAT-AATGAAAT-AT
1 AATATAAAT-ATATAAT
*
70402193 AATAT-AATA-AGGAAT
1 AATATAAATATA-TAAT
70402208 -ATAT-AA-A-ATAAT
1 AATATAAATATATAAT
* *
70402220 AATAAAAATATAAAAT
1 AATATAAATATATAAT
70402236 -ATAGTAAA-ATA-AAT
1 AATA-TAAATATATAAT
* *
70402250 AAAATATAATA-AAAAT
1 AATATA-AATATATAAT
*
70402266 -ATATAACATATAATAAA
1 AATATAA-ATAT-ATAAT
* *
70402283 AATACAAATATA-ACAG
1 AATATAAATATATA-AT
*
70402299 AATAAATAATATAT-AT
1 AATATA-AATATATAAT
* *
70402315 AATAAAAATATATGAT
1 AATATAAATATATAAT
70402331 AA
1 AA
70402333 ATTTTTTTAA
Statistics
Matches: 224, Mismatches: 33, Indels: 69
0.69 0.10 0.21
Matches are distributed among these distances:
12 13 0.06
13 13 0.06
14 47 0.21
15 57 0.25
16 44 0.20
17 30 0.13
18 8 0.04
19 7 0.03
20 5 0.02
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (16 bp):
AATATAAATATATAAT
Found at i:70402058 original size:14 final size:14
Alignment explanation
Indices: 70402010--70402110 Score: 72
Period size: 14 Copynumber: 7.4 Consensus size: 14
70402000 ATATATAGTG
* *
70402010 TATAACATAATTTA
1 TATAATATAAATTA
70402024 TA-AATA-AAATATA
1 TATAATATAAAT-TA
*
70402037 TAATAATATAAATCA
1 T-ATAATATAAATTA
*
70402052 TAT-A-ATAAATAA
1 TATAATATAAATTA
70402064 TATAATA-AAATATA
1 TATAATATAAAT-TA
70402078 TATAATA-AAATGTA
1 TATAATATAAAT-TA
70402092 TATAATAT-AATATA
1 TATAATATAAAT-TA
70402106 TATAA
1 TATAA
70402111 AAGAAAGTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
12 13 0.18
13 12 0.17
14 37 0.51
15 6 0.08
16 4 0.06
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (14 bp):
TATAATATAAATTA
Found at i:70402101 original size:5 final size:5
Alignment explanation
Indices: 70402026--70402201 Score: 64
Period size: 5 Copynumber: 34.8 Consensus size: 5
70402016 ATAATTTATA
* * *
70402026 AATAA AATAT -ATAAT AATAT AA-AT CATAT AATAAAT AATAT AATAA
1 AATAT AATAT AAT-AT AATAT AATAT AATAT AAT--AT AATAT AATAT
* * * *
70402072 AATAT -ATAT AATAA AATGT -ATAT AATAT AATAT -ATAT AAAAG AA-AGT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATA-T
* * * * * *
70402119 AAGAT ATTAT AAT-G AATA- ATATAT AACAA AATAT AATATGT AATAA
1 AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT AATA--T AATAT
*
70402165 AATATGT AGATAA AATAT AATGA- AATAT AATAT AATA
1 AATA--T A-ATAT AATAT AAT-AT AATAT AATAT AATA
70402202 AGGAATATAT
Statistics
Matches: 127, Mismatches: 24, Indels: 40
0.66 0.13 0.21
Matches are distributed among these distances:
4 22 0.17
5 85 0.67
6 6 0.05
7 11 0.09
8 3 0.02
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (5 bp):
AATAT
Found at i:70402101 original size:16 final size:14
Alignment explanation
Indices: 70402022--70402333 Score: 141
Period size: 14 Copynumber: 21.8 Consensus size: 14
70402012 TAACATAATT
70402022 TATA-AATAAAATA
1 TATATAATAAAATA
70402035 TATAATAATATAAAT-
1 TAT-ATAATA-AAATA
*
70402050 CATATAAT-AAATA
1 TATATAATAAAATA
70402063 -ATATAATAAAATA
1 TATATAATAAAATA
*
70402076 TATATAATAAAATG
1 TATATAATAAAATA
*
70402090 TATATAATATAATA
1 TATATAATAAAATA
*
70402104 TATATAAAAGAAAGTAA
1 TATATAATA-AAA-T-A
* *
70402121 GATATTATAATGAATAA
1 TATATAATAA--AAT-A
*
70402138 TATATAACAAAATA
1 TATATAATAAAATA
70402152 TAATATGTAATAAAATA
1 T-ATA--TAATAAAATA
* *
70402169 TGTA-GATAAAATA
1 TATATAATAAAATA
* *
70402182 TA-ATGA-AATATA
1 TATATAATAAAATA
70402194 -ATATAATAAGGAATA
1 TATATAATAA--AATA
*
70402209 TATAAAATAATAATA
1 TATATAATAA-AATA
* *
70402224 AAAAT-ATAAAATA
1 TATATAATAAAATA
*
70402237 TAGTAAAAT-AAATAA
1 TA-TATAATAAAAT-A
*
70402252 AATATAATAAAA-A
1 TATATAATAAAATA
*
70402265 TATATAACATATAATA
1 TATAT-A-ATAAAATA
70402281 -A-A-AATACAAATA
1 TATATAATA-AAATA
* *
70402293 TAACAGAATAAATAATA
1 T-ATATAAT-AA-AATA
70402310 TATATAATAAAA-A
1 TATATAATAAAATA
*
70402323 TATATGATAAA
1 TATATAATAAA
70402334 TTTTTTTAAA
Statistics
Matches: 230, Mismatches: 35, Indels: 68
0.69 0.11 0.20
Matches are distributed among these distances:
11 4 0.02
12 25 0.11
13 42 0.18
14 59 0.26
15 39 0.17
16 26 0.11
17 33 0.14
18 2 0.01
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (14 bp):
TATATAATAAAATA
Found at i:70402108 original size:28 final size:27
Alignment explanation
Indices: 70402010--70402110 Score: 109
Period size: 28 Copynumber: 3.7 Consensus size: 27
70402000 ATATATAGTG
* *
70402010 TATAACATAATTTATA-AATAAAATATA
1 TATAATATAATATATATAATAAAAT-TA
*
70402037 TAATAATATAA-ATCATATAAT-AAATAA
1 T-ATAATATAATAT-ATATAATAAAATTA
*
70402064 TATAATAAAATATATATAATAAAATGTA
1 TATAATATAATATATATAATAAAAT-TA
70402092 TATAATATAATATATATAA
1 TATAATATAATATATATAA
70402111 AAGAAAGTAA
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
26 15 0.24
27 10 0.16
28 34 0.55
29 3 0.05
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (27 bp):
TATAATATAATATATATAATAAAATTA
Found at i:70402179 original size:13 final size:12
Alignment explanation
Indices: 70402148--70402182 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
70402138 TATATAACAA
*
70402148 AATATAATATGT
1 AATAAAATATGT
70402160 AATAAAATATGT
1 AATAAAATATGT
70402172 AGATAAAATAT
1 A-ATAAAATAT
70402183 AATGAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (12 bp):
AATAAAATATGT
Found at i:70402229 original size:9 final size:9
Alignment explanation
Indices: 70402217--70402286 Score: 63
Period size: 10 Copynumber: 7.4 Consensus size: 9
70402207 TATATAAAAT
70402217 AATAATAAA
1 AATAATAAA
70402226 AAT-ATAAA
1 AATAATAAA
*
70402234 ATATAGT-AA
1 A-ATAATAAA
70402243 AATAAATAAA
1 AAT-AATAAA
70402253 ATATAATAAA
1 A-ATAATAAA
70402263 AATATATAACA
1 AATA-ATAA-A
*
70402274 TATAATAAA
1 AATAATAAA
70402283 AATA
1 AATA
70402287 CAAATATAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
8 8 0.16
9 17 0.34
10 19 0.38
11 6 0.12
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (9 bp):
AATAATAAA
Found at i:70402268 original size:37 final size:36
Alignment explanation
Indices: 70402023--70402295 Score: 119
Period size: 38 Copynumber: 7.4 Consensus size: 36
70402013 AACATAATTT
*
70402023 ATAAATAAAATAT-ATAATAATATAAATCATAT---A
1 ATAAATAAAATATAATAAAAATATAAAT-ATATAAGA
*
70402056 ATAAAT--AATATAATAAAATATATATAATA-A-AATGT
1 ATAAATAAAATATAATAAAA-ATATA-AATATATAA-GA
* * *
70402091 ATATAATATAATATATATAAAAGAAAGTAAGATAT-T-ATA
1 ATA-AATAAAATATA-ATAAAA-ATA-TAA-ATATATAAGA
* * * *
70402130 ATGAATAATATATAA-CAAAATATAATATGTAATAA-A
1 ATAAATAAAATATAATAAAAATATAA-ATAT-ATAAGA
*
70402166 ATATGTAGATAAAATATAAT-GAAATAT-AATATAATAAGGA
1 ATA---A-ATAAAATATAATAAAAATATAAATAT-ATAA-GA
*
70402206 ATATATAAAATAATAATAAAAATATAAAATATAGTAA-A
1 ATAAATAAAAT-ATAATAAAAATAT-AAATATA-TAAGA
* *
70402244 ATAAATAAAATATAATAAAAATATATAACATATAATA
1 ATAAATAAAATATAATAAAAATATA-AATATATAAGA
70402281 A-AAATACAAATATAA
1 ATAAATA-AAATATAA
70402296 CAGAATAAAT
Statistics
Matches: 186, Mismatches: 21, Indels: 62
0.69 0.08 0.23
Matches are distributed among these distances:
31 5 0.03
32 6 0.03
33 12 0.06
34 9 0.05
35 5 0.03
36 26 0.14
37 35 0.19
38 40 0.22
39 14 0.08
40 34 0.18
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (36 bp):
ATAAATAAAATATAATAAAAATATAAATATATAAGA
Found at i:70402294 original size:56 final size:58
Alignment explanation
Indices: 70402187--70402327 Score: 178
Period size: 58 Copynumber: 2.4 Consensus size: 58
70402177 AAATATAATG
* * **
70402187 AAATATAATATAATAAGGAATATATAAAATAATAATAAAAATATAAAATATAGTAAAAT
1 AAATAAAATATAATAA-AAATATATAAAATAATAATAAAAATATAAAATATAACAAAAT
* * *
70402246 AAATAAAATATAATAAAAATATATAACAT-ATAATAAAAATA-CAAATATAACAGAAT
1 AAATAAAATATAATAAAAATATATAAAATAATAATAAAAATATAAAATATAACAAAAT
70402302 AAATAATATATATAATAAAAATATAT
1 AAATAA-A-ATATAATAAAAATATAT
70402328 GATAAATTTT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
56 17 0.23
57 13 0.18
58 28 0.38
59 15 0.21
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (58 bp):
AAATAAAATATAATAAAAATATATAAAATAATAATAAAAATATAAAATATAACAAAAT
Found at i:70402639 original size:22 final size:23
Alignment explanation
Indices: 70402613--70402655 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
70402603 GGTTAGGGAT
70402613 AATTT-AAAA-ATAAAATAAAATG
1 AATTTGAAAATATAAAA-AAAATG
70402635 AATTTGAAAATATAAAAAAAA
1 AATTTGAAAATATAAAAAAAA
70402656 CACAGAAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 8 0.42
24 6 0.32
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (23 bp):
AATTTGAAAATATAAAAAAAATG
Found at i:70404321 original size:44 final size:44
Alignment explanation
Indices: 70404209--70404358 Score: 167
Period size: 44 Copynumber: 3.4 Consensus size: 44
70404199 TTCTCCGTCG
* * * * * *
70404209 AATATAGAGATGCCAAATCAG-TTTCTTCGATTTGTTCTTTGAC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
** * * * *
70404252 AATACAGAGACACTAATTGTACTATCTTCGATCTGCTCTCTGAC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
* *
70404296 AATACAGAGATGCAAAATCTGCTATCTTTGATCTGCTCTCTGAC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
70404340 AATACAGAGATGCCAAATC
1 AATACAGAGATGCCAAATC
70404359 ATCTTAGATT
Statistics
Matches: 86, Mismatches: 20, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
43 13 0.15
44 73 0.85
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.32
Consensus pattern (44 bp):
AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
Found at i:70404529 original size:308 final size:308
Alignment explanation
Indices: 70403966--70404553 Score: 881
Period size: 308 Copynumber: 1.9 Consensus size: 308
70403956 GCCATGTTTA
* *
70403966 TATCTTCGATCTGCTCTCTGACAAAACAGAGATGCCAAATCTGCTATCTTCAATATTCTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAAAACAGAGATGCAAAATCTGCTATCTTCAATATGCTCTCTGA
* * *
70404031 CAATATAGAGACGCCAAATCATCTTATATCTGCTTCAGCGTAAACACGTGAAAGCAAAATCTGCT
66 CAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCAAAATCTACT
* * **
70404096 ATGTCTTCGATCTGCTCCTTGTAAATGCATGGATGCCAAATCATCTTAGATCTACTTCAATATGA
131 ATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTACTTCAATACAA
* * * *
70404161 AAACATCCGAAGGTTGGATCTTCTATGTATTTGATCTGTTCTCCGTCGAATATAGAGATGCCAAA
196 AAACATCCGAAGGTTAGATCTGCTATGTATTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAA
* *
70404226 TCAGTTTCTTCGATTTGTTCTTTGACAATACAGAGACACTAATTGTAC
261 TCAGTTTCTTCAACTTGTTCTTTGACAATACAGAGACACTAATTGTAC
* ** *
70404274 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCAAAATCTGCTATCTTTGATCTGCTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAAAACAGAGATGCAAAATCTGCTATCTTCAATATGCTCTCTGA
* * *
70404339 CAATACAGAGATGCCAAATCATCTTAGAT-TCGCTTTAGCGTAAACACGTGAAAGCCAAATCTAC
66 CAATACAGAGACGCCAAATCATCTTAGATCT-GCTTCAGCGTAAACACGTGAAAGCAAAATCTAC
* * * * *
70404403 TATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCCTCTTGGATCTGCTTCGATGCA
130 TATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTACTTCAATACA
* * *
70404468 AAAACATTCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAA
195 AAAACATCCGAAGGTTAGATCTGCTATGTATTCGATCTGCTCTCCGTCGAATATAGAGATGCCAA
*
70404533 ATCTGTTTCTTCAACTTGTTC
260 ATCAGTTTCTTCAACTTGTTC
70404554 CCTGATGATA
Statistics
Matches: 248, Mismatches: 31, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
307 1 0.00
308 247 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (308 bp):
TATCTTCGATCTGCTCTCTGACAAAACAGAGATGCAAAATCTGCTATCTTCAATATGCTCTCTGA
CAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCAAAATCTACT
ATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTACTTCAATACAA
AAACATCCGAAGGTTAGATCTGCTATGTATTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAA
TCAGTTTCTTCAACTTGTTCTTTGACAATACAGAGACACTAATTGTAC
Found at i:70409039 original size:25 final size:25
Alignment explanation
Indices: 70409005--70409054 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
70408995 ATATAAAGAA
70409005 TATAAAAAGAATGAATGAATTTAAG
1 TATAAAAAGAATGAATGAATTTAAG
*
70409030 TATACAAAGAATGAATGAATTTAAG
1 TATAAAAAGAATGAATGAATTTAAG
70409055 AATGATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.54, C:0.02, G:0.16, T:0.28
Consensus pattern (25 bp):
TATAAAAAGAATGAATGAATTTAAG
Found at i:70416281 original size:9 final size:9
Alignment explanation
Indices: 70416258--70416552 Score: 61
Period size: 9 Copynumber: 32.1 Consensus size: 9
70416248 TTATAAATAA
70416258 AATATATAAT
1 AATATA-AAT
70416268 AATATAAAT
1 AATATAAAT
70416277 CATATAATAAAT
1 -A-AT-ATAAAT
*
70416289 AATATAATAA
1 AATATAA-AT
*
70416299 AATATATAT
1 AATATAAAT
70416308 AATA-AAAT
1 AATATAAAT
*
70416316 GTATATAATAT
1 -AATATAA-AT
*
70416327 AATATATAT
1 AATATAAAT
* *
70416336 AAAAGAAAGT
1 AATATAAA-T
* *
70416346 AAGATATTAT
1 AATATA-AAT
70416356 AATGA-ATAAT
1 AAT-ATA-AAT
*
70416366 -ATATAACAA
1 AATATAA-AT
70416375 AATATAATATGT
1 AATATAA-A--T
70416387 AATA-AAAT
1 AATATAAAT
* *
70416395 -ATGTAGAT
1 AATATAAAT
*
70416403 AAAATATAAT
1 AATATA-AAT
70416413 GAAATATAATAT
1 --AATATAA-AT
70416425 AATA-AGGAAT
1 AATATA--AAT
70416435 -ATATAAAAT
1 AATAT-AAAT
70416444 AATAATAAA-
1 AAT-ATAAAT
70416453 AATATAAA-
1 AATATAAAT
70416461 AATAT-AAT
1 AATATAAAT
*
70416469 AAAATAAAT
1 AATATAAAT
*
70416478 AA-A-ATAT
1 AATATAAAT
*
70416485 AATAAAAAT
1 AATATAAAT
70416494 -ATATAACAT
1 AATATAA-AT
70416503 -ATAATAAA-
1 AAT-ATAAAT
*
70416511 AATACAAAT
1 AATATAAAT
*
70416520 -ATA-ACAT
1 AATATAAAT
70416527 -A-ATAAAT
1 AATATAAAT
*
70416534 AATATATAT
1 AATATAAAT
*
70416543 AATAAAAAT
1 AATATAAAT
70416552 A
1 A
70416553 TATGATAATT
Statistics
Matches: 213, Mismatches: 34, Indels: 77
0.66 0.10 0.24
Matches are distributed among these distances:
6 1 0.00
7 16 0.08
8 38 0.18
9 67 0.31
10 60 0.28
11 14 0.07
12 17 0.08
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (9 bp):
AATATAAAT
Found at i:70416281 original size:17 final size:16
Alignment explanation
Indices: 70416253--70416561 Score: 82
Period size: 14 Copynumber: 20.2 Consensus size: 16
70416243 ATAATTTATA
70416253 AATA-AAATATATAAT
1 AATATAAATATATAAT
*
70416268 AATATAAAT-CAT-AT
1 AATATAAATATATAAT
70416282 -A-ATAAATA-AT-AT
1 AATATAAATATATAAT
70416294 AATA-AAATATAT-AT
1 AATATAAATATATAAT
*
70416308 AATA-AAATGTAT-AT
1 AATATAAATATATAAT
*
70416322 AATATAATATATATAAA
1 AATATAA-ATATATAAT
*
70416339 AGAAAGTAAGATATTATAAT
1 A-ATA-TAA-ATA-TATAAT
* *
70416359 GA-AT-AATATATAAC
1 AATATAAATATATAAT
* *
70416373 AAAATATAATATGTAAT
1 AATATA-AATATATAAT
* ** *
70416390 AAAATATGTAGATAA-
1 AATATAAATATATAAT
*
70416405 AATAT-AATGAAAT-AT
1 AATATAAAT-ATATAAT
*
70416420 AATAT-AATA-AGGAAT
1 AATATAAATATA-TAAT
*
70416435 -ATATAAAATAATAATAAA
1 AATAT-AAAT-AT-ATAAT
70416453 AATATAAA-A-AT-AT
1 AATATAAATATATAAT
*
70416466 AATA-AAATAAATAA-
1 AATATAAATATATAAT
*
70416480 AATAT-AATA-AAAAT
1 AATATAAATATATAAT
*
70416494 -ATATAACATATAATAAA
1 AATATAA-ATAT-ATAAT
*
70416511 AATACAAATATA-ACAT
1 AATATAAATATATA-AT
*
70416527 AATAAATAATATAT-AT
1 AATATA-AATATATAAT
* *
70416543 AATAAAAATATATGAT
1 AATATAAATATATAAT
70416559 AAT
1 AAT
70416562 TTTTTTTTAA
Statistics
Matches: 226, Mismatches: 30, Indels: 75
0.68 0.09 0.23
Matches are distributed among these distances:
12 13 0.06
13 21 0.09
14 50 0.22
15 42 0.19
16 39 0.17
17 31 0.14
18 13 0.06
19 12 0.05
20 5 0.02
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (16 bp):
AATATAAATATATAAT
Found at i:70416285 original size:14 final size:14
Alignment explanation
Indices: 70416237--70416337 Score: 72
Period size: 14 Copynumber: 7.4 Consensus size: 14
70416227 ATATATAGTG
* *
70416237 TATAACATAATTTA
1 TATAATATAAATTA
70416251 TA-AATA-AAATATA
1 TATAATATAAAT-TA
*
70416264 TAATAATATAAATCA
1 T-ATAATATAAATTA
*
70416279 TAT-A-ATAAATAA
1 TATAATATAAATTA
70416291 TATAATA-AAATATA
1 TATAATATAAAT-TA
70416305 TATAATA-AAATGTA
1 TATAATATAAAT-TA
70416319 TATAATAT-AATATA
1 TATAATATAAAT-TA
70416333 TATAA
1 TATAA
70416338 AAGAAAGTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
12 13 0.18
13 12 0.17
14 37 0.51
15 6 0.08
16 4 0.06
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (14 bp):
TATAATATAAATTA
Found at i:70416311 original size:19 final size:19
Alignment explanation
Indices: 70416253--70416561 Score: 140
Period size: 19 Copynumber: 15.9 Consensus size: 19
70416243 ATAATTTATA
70416253 AATAAAATATATAATAATAT
1 AATAAAATATAT-ATAATAT
* * *
70416273 AAATCATATAATAAATAATAT
1 -AATAAAAT-ATATATAATAT
*
70416294 AATAAAATATATATAATAA
1 AATAAAATATATATAATAT
**
70416313 AAT-GTATATAATATAATAT
1 AATAAAATAT-ATATAATAT
* *
70416332 ATATAAAAGA-A-AGTAAGAT
1 A-ATAAAATATATA-TAATAT
* *
70416351 ATTATAATGA-ATA-ATATAT
1 AATAAAAT-ATATATA-ATAT
* *
70416370 AACAAAATATA-AT-ATGT
1 AATAAAATATATATAATAT
* * *
70416387 AATAAAATATGTA-GATAA
1 AATAAAATATATATAATAT
* *
70416405 AATATAATGAAATATAATAT
1 AATAAAAT-ATATATAATAT
*
70416425 AATAAGGAATATATAAAATAAT
1 AATAA--AATATATATAAT-AT
*
70416447 AATAAAA-ATATAAAAATAT
1 AATAAAATATAT-ATAATAT
* *
70416466 AATAAAATAAATAAAATAT
1 AATAAAATATATATAATAT
70416485 AATAAAA-ATATATAACATAT
1 AATAAAATATATAT-A-ATAT
* *
70416505 AATAAAAATACAAATATAACAT
1 AAT-AAAAT--ATATATAATAT
70416527 AAT-AAATA-ATAT-ATAT
1 AATAAAATATATATAATAT
70416543 AATAAAAATATATGATAAT
1 AAT-AAAATATAT-ATAAT
70416562 TTTTTTTTAA
Statistics
Matches: 218, Mismatches: 40, Indels: 60
0.69 0.13 0.19
Matches are distributed among these distances:
16 6 0.03
17 16 0.07
18 32 0.15
19 72 0.33
20 39 0.18
21 28 0.13
22 19 0.09
23 1 0.00
24 5 0.02
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
AATAAAATATATATAATAT
Found at i:70416329 original size:38 final size:37
Alignment explanation
Indices: 70416253--70416555 Score: 140
Period size: 40 Copynumber: 7.7 Consensus size: 37
70416243 ATAATTTATA
*
70416253 AATAAAATATATAATAATATAAATCATATAATAAATAATAT
1 AATAAAATATAT-ATAATA-AAATTATATAAT--ATAATAT
70416294 AATAAAATATATATAATAAAATGTATATAATATAATAT
1 AATAAAATATATATAATAAAAT-TATATAATATAATAT
* * *
70416332 ATATAAAAGA-A-AGTAA-GATATTATAATGAATA-ATATAT
1 A-ATAAAATATATA-TAATAAAATTAT-AT-AATATA-ATAT
* * *
70416370 AACAAAATATAATATGTAATAAAA-TATGTAGATAAAATAT
1 AATAAAATAT-ATA--TAATAAAATTATATA-ATATAATAT
* *
70416410 AATGAAATATAATATAATAAGGAA-TATATAAAATAATAAT
1 AATAAAATAT-ATATAATAA--AATTATATAATATAAT-AT
* * *
70416450 AA-AAATATAAAAATATAATAAAATAAATAAAATATAATA-
1 AATAAA-AT--ATATATAATAAAAT-TATATAATATAATAT
* * * *
70416489 AA-AATATATAACATATAATAAAAATACA-AATATAACAT
1 AATAA-A-AT-ATATATAATAAAATTATATAATATAATAT
*
70416527 AATAAATAATATATATAATAAAAATATAT
1 AAT-AA-AATATATATAATAAAATTATAT
70416556 GATAATTTTT
Statistics
Matches: 210, Mismatches: 26, Indels: 54
0.72 0.09 0.19
Matches are distributed among these distances:
36 3 0.01
37 21 0.10
38 47 0.22
39 41 0.20
40 56 0.27
41 39 0.19
42 3 0.01
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (37 bp):
AATAAAATATATATAATAAAATTATATAATATAATAT
Found at i:70416335 original size:28 final size:27
Alignment explanation
Indices: 70416237--70416337 Score: 109
Period size: 28 Copynumber: 3.7 Consensus size: 27
70416227 ATATATAGTG
* *
70416237 TATAACATAATTTATA-AATAAAATATA
1 TATAATATAATATATATAATAAAAT-TA
*
70416264 TAATAATATAA-ATCATATAAT-AAATAA
1 T-ATAATATAATAT-ATATAATAAAATTA
*
70416291 TATAATAAAATATATATAATAAAATGTA
1 TATAATATAATATATATAATAAAAT-TA
70416319 TATAATATAATATATATAA
1 TATAATATAATATATATAA
70416338 AAGAAAGTAA
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
26 15 0.24
27 10 0.16
28 34 0.55
29 3 0.05
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (27 bp):
TATAATATAATATATATAATAAAATTA
Found at i:70416406 original size:13 final size:12
Alignment explanation
Indices: 70416375--70416409 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
70416365 TATATAACAA
*
70416375 AATATAATATGT
1 AATAAAATATGT
70416387 AATAAAATATGT
1 AATAAAATATGT
70416399 AGATAAAATAT
1 A-ATAAAATAT
70416410 AATGAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (12 bp):
AATAAAATATGT
Found at i:70416448 original size:27 final size:27
Alignment explanation
Indices: 70416253--70416554 Score: 135
Period size: 29 Copynumber: 10.4 Consensus size: 27
70416243 ATAATTTATA
* *
70416253 AATAAAATATATAATAATATAAATCATAT
1 AATAAAA-ATATAATAAAAT-AATAATAT
70416282 AATAAATAATATAATAAAAT-AT-ATAT
1 AATAAA-AATATAATAAAATAATAATAT
* *
70416308 AAT-AAAATGTATATAATATAATATATAT
1 AATAAAAATATA-ATAAAATAATA-ATAT
70416336 AA-AAGAAAGTA-AGATATTATAATGAATAATAT
1 AATAA-AAA-TATA-ATA--A-AAT-AATAATAT
*
70416368 -ATAACAAAATATAATATGTAATAA-AATATGT
1 AAT-A-AAAATATAATA--AAATAATAATA--T
*
70416399 AGAT-AAAATATAATGAAAT-ATAATAT
1 A-ATAAAAATATAATAAAATAATAATAT
* *
70416425 AATAAGGAATAT-ATAAAATAATAATAAAA
1 AATAA-AAATATAATAAAATAATAAT--AT
70416454 ATATAAAAATATAATAAAATAAATAAAATAT
1 A-ATAAAAATATAATAAAAT-AAT--AATAT
70416485 AATAAAAATAT-ATAACATATAATAA-A-
1 AATAAAAATATAATAA-A-ATAATAATAT
*
70416511 AATACAAATATAACATAATAAATAATATATAT
1 AATAAAAATAT-A-AT-A-AAATAATA-ATAT
70416543 AATAAAAATATA
1 AATAAAAATATA
70416555 TGATAATTTT
Statistics
Matches: 215, Mismatches: 17, Indels: 80
0.69 0.05 0.26
Matches are distributed among these distances:
24 5 0.02
25 10 0.05
26 28 0.13
27 14 0.07
28 16 0.07
29 47 0.22
30 42 0.20
31 16 0.07
32 22 0.10
33 14 0.07
34 1 0.00
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (27 bp):
AATAAAAATATAATAAAATAATAATAT
Found at i:70416505 original size:39 final size:39
Alignment explanation
Indices: 70416420--70416546 Score: 139
Period size: 39 Copynumber: 3.1 Consensus size: 39
70416410 AATGAAATAT
*
70416420 AATATAATAAGGAATATATAAAATAATAATAAAAATATA-AA
1 AATATAATAA--AATAAATAAAAT-ATAATAAAAATATATAA
70416461 AATATAATAAAATAAATAAAATATAATAAAAATATATAA
1 AATATAATAAAATAAATAAAATATAATAAAAATATATAA
* * * *
70416500 CATATAATAAAAATACAAATATAACATAATAAATAATATATAT
1 AATATAAT-AAAAT--AAATAAAATATAATAAA-AATATATAA
70416543 AATA
1 AATA
70416547 AAAATATATG
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
38 14 0.19
39 20 0.27
40 5 0.07
41 10 0.13
42 15 0.20
43 11 0.15
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (39 bp):
AATATAATAAAATAAATAAAATATAATAAAAATATATAA
Found at i:70416544 original size:58 final size:61
Alignment explanation
Indices: 70416415--70416555 Score: 184
Period size: 58 Copynumber: 2.4 Consensus size: 61
70416405 AATATAATGA
* *
70416415 AATATAATATAATAAGGAATATATAAAATAATAATAAAAATATAAAAATATAATAAAATAAAT
1 AATAT-ATATAATAA-AAATATATAAAATAATAATAAAAATATAAAAATATAACAAAATAAAT
* * *
70416478 AA-A-ATATAATAAAAATATATAACAT-ATAAT-AAAA-ATACAAATATAACATAATAAAT
1 AATATATATAATAAAAATATATAAAATAATAATAAAAATATAAAAATATAACAAAATAAAT
70416534 AATATATATAATAAAAATATAT
1 AATATATATAATAAAAATATAT
70416556 GATAATTTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 9
0.84 0.06 0.11
Matches are distributed among these distances:
56 21 0.30
57 5 0.07
58 22 0.31
59 11 0.15
60 9 0.13
62 1 0.01
63 2 0.03
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.29
Consensus pattern (61 bp):
AATATATATAATAAAAATATATAAAATAATAATAAAAATATAAAAATATAACAAAATAAAT
Found at i:70416866 original size:22 final size:24
Alignment explanation
Indices: 70416841--70416884 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
70416831 GGTTAGGGCT
*
70416841 AATTT-AAAA-ATAAAATAAAATG
1 AATTTGAAAATATAAAAAAAAATG
70416863 AATTTGAAAATATAAAAAAAAA
1 AATTTGAAAATATAAAAAAAAA
70416885 ACACAGAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 4 0.21
24 10 0.53
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (24 bp):
AATTTGAAAATATAAAAAAAAATG
Found at i:70427096 original size:14 final size:15
Alignment explanation
Indices: 70427074--70427106 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
70427064 ACTAATTATG
70427074 TATGTCTAATAGTTA
1 TATGTCTAATAGTTA
*
70427089 TATG-CTAATGGTTA
1 TATGTCTAATAGTTA
70427103 TATG
1 TATG
70427107 AACTTGTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.45
Consensus pattern (15 bp):
TATGTCTAATAGTTA
Found at i:70428474 original size:56 final size:56
Alignment explanation
Indices: 70428388--70428674 Score: 409
Period size: 56 Copynumber: 5.2 Consensus size: 56
70428378 GCCACTACAG
* * * *
70428388 GGTCTTACTCGTAAACACATATCAGAATCACATATCGATGTCAACGTATTAAATGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* *
70428444 GGTCTTACTTGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* *
70428500 GGTCTTACTCGCACACGCATATCAGAATCATATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
**
70428556 GGTCTTACTCGCACACACATATTGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * * *
70428612 GGTCTTACT--CACACATATTTC-GAAATCACATATTGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACACATATCAG-AATCACATATCGATGCCAACGTATTAAACGT
*
70428666 GATCTTACT
1 GGTCTTACT
70428675 TGTAATCACA
Statistics
Matches: 210, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
53 1 0.00
54 46 0.22
56 163 0.78
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:70428683 original size:43 final size:43
Alignment explanation
Indices: 70428635--70428819 Score: 196
Period size: 43 Copynumber: 4.3 Consensus size: 43
70428625 CATATTTCGA
* ** **
70428635 AATCACATATTGATGCCAACGTATTAAATGTGATCTTACTTGT
1 AATCACATATCGATGCCAACGTACCAAATGTGATCTTACACGT
* * *
70428678 AATCACATATCGATGCCAACGTCCCAGATGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTACCAAATGTGATCTTACACGT
* * * * *
70428721 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACTT
1 AATCACATATCGATGCCAACGTACCAAATGTGATCTTACACGT
*
70428764 AATCACATATCGATGCCAATGT-CCTAGACATG-G-TCTTACACGT
1 AATCACATATCGATGCCAACGTACC-A-A-ATGTGATCTTACACGT
70428807 AATCACATATCGA
1 AATCACATATCGA
70428820 AAATCCTATG
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
42 2 0.02
43 120 0.96
44 1 0.01
45 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTACCAAATGTGATCTTACACGT
Found at i:70433878 original size:34 final size:34
Alignment explanation
Indices: 70433835--70433905 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
70433825 CAACAACGGA
70433835 GATGGTTAGAATTGTTGAAAAATTAAGAGCTAGT
1 GATGGTTAGAATTGTTGAAAAATTAAGAGCTAGT
*
70433869 GATGGTTAGAATTGTTGAAAGATTAAGAGCTAGT
1 GATGGTTAGAATTGTTGAAAAATTAAGAGCTAGT
70433903 GAT
1 GAT
70433906 TGACTACCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.37, C:0.03, G:0.28, T:0.32
Consensus pattern (34 bp):
GATGGTTAGAATTGTTGAAAAATTAAGAGCTAGT
Found at i:70440399 original size:39 final size:39
Alignment explanation
Indices: 70440352--70440574 Score: 326
Period size: 39 Copynumber: 5.7 Consensus size: 39
70440342 TTCCAACCCA
*
70440352 AATGCCTTCGGGACTTAGCCCGGATATAACACCAACACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
70440391 AATACCTTCGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
70440430 AATGCCTTCGGGACTTATCCCGGATATAACACTAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
70440469 AATGCCTTCGGGACTTAGCCCGGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
70440508 AATGCCTTCGGGACTTAGCCCGGATATAA-ATCTCA-CAC-
1 AATGCCTTCGGGACTTAGCCCGGATATAACA-C-CAGCACG
* * * *
70440546 AAGGCCTGCGGGTCTTAGCCCGGTTATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
70440575 TCCTCAATTA
Statistics
Matches: 169, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 26 0.15
39 141 0.83
40 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:70446158 original size:39 final size:39
Alignment explanation
Indices: 70446099--70446256 Score: 264
Period size: 39 Copynumber: 4.1 Consensus size: 39
70446089 ATGTAATATA
*
70446099 TATATGCGAGAATTATATCCGGACTTCAGGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
70446138 TATAAGCGAGAATTATATCCGGACTTCAGGTCCACAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
70446177 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
70446216 TATATGCGAGAA-TATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
70446254 TAT
1 TAT
70446257 GTGCTGGACA
Statistics
Matches: 111, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
38 27 0.24
39 84 0.76
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:70454494 original size:39 final size:39
Alignment explanation
Indices: 70454281--70454478 Score: 342
Period size: 39 Copynumber: 5.1 Consensus size: 39
70454271 TGTAAATATA
*
70454281 TATATGCGAGAATTATATCCGGACTTCAGGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
70454320 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
70454359 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
70454398 TATATGCGAGAATTATACCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
70454437 TATATGCGAGAATAATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
70454476 TAT
1 TAT
70454479 GTGCTGGACA
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 150 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:70459491 original size:16 final size:17
Alignment explanation
Indices: 70459470--70459501 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
70459460 AAATAGGTTG
70459470 AGAAAATT-ATTTAATT
1 AGAAAATTAATTTAATT
70459486 AGAAAATTAATTTAAT
1 AGAAAATTAATTTAAT
70459502 AAATGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
AGAAAATTAATTTAATT
Found at i:70463078 original size:42 final size:42
Alignment explanation
Indices: 70463019--70463182 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
70463009 TTAAGGTTAC
*
70463019 TGAGACTAT-GTGTAAGACCATATCTGGGATATGGCATCAATA
1 TGAGACT-TCGTGTAAGACCATATCTGGGATATGGCATCAATG
** *
70463061 TGAGACTTCGTGTAAGACCATGCCTGGGATATGACATCAATG
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATG
* * * * * *
70463103 TGATATTTCGTGTAAGACCATAGCTGGGCTATTAGCATCGATG
1 TGAGACTTCGTGTAAGACCATATCTGGGATA-TGGCATCAATG
* * *
70463146 CGAGA-TTACATGTAAGACCATATCTAGGATATGGCAT
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGGCAT
70463183 TGGTATGGTA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 69 0.69
43 30 0.30
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATG
Found at i:70465565 original size:46 final size:46
Alignment explanation
Indices: 70465515--70465687 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
70465505 TGGTTGAGCA
70465515 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70465561 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70465606 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
70465654 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70465688 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 59 0.55
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70465671 original size:93 final size:93
Alignment explanation
Indices: 70465512--70465682 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
70465502 GGATGGTTGA
*
70465512 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
70465577 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
70465605 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
70465669 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
70465683 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:70467679 original size:46 final size:46
Alignment explanation
Indices: 70467526--70467696 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
70467516 GGTTGAGCAT
* * *
70467526 CCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
70467571 CCGA--AC-TTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
70467613 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
70467661 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70467697 CGGGTTACAT
Statistics
Matches: 101, Mismatches: 12, Indels: 25
0.73 0.09 0.18
Matches are distributed among these distances:
39 2 0.02
40 3 0.03
42 22 0.22
43 1 0.01
44 4 0.04
45 4 0.04
46 36 0.36
47 19 0.19
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Done.