Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 228 of 325
Found at i:71902123 original size:94 final size:95
Alignment explanation
Indices: 71901995--71902166 Score: 276
Period size: 94 Copynumber: 1.8 Consensus size: 95
71901985 TATGAGAGTC
*
71901995 AGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGAGATACAAGCCAATGTAAGACATGTCTG
1 AGTGTAAGACATGTCTAGGACATGCATAGACCTCGAGAGATACAAGCCAATGTAAGACATGTCTG
71902060 GGACAT-GCATCGGCATTGAGACAAGAGCT
66 GGACATGGCATCGGCATTGAGACAAGAGCT
* * * *
71902089 AGTGTAAGACATGTCT-GGAACATGCATAGGCCTCGAGAGATACAAGCTAGTGTAAGACCTGTCT
1 AGTGTAAGACATGTCTAGG-ACATGCATAGACCTCGAGAGATACAAGCCAATGTAAGACATGTCT
71902153 GGGACATGGCATCG
65 GGGACATGGCATCG
71902167 ACTTTGATGT
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
93 2 0.03
94 63 0.89
95 6 0.08
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (95 bp):
AGTGTAAGACATGTCTAGGACATGCATAGACCTCGAGAGATACAAGCCAATGTAAGACATGTCTG
GGACATGGCATCGGCATTGAGACAAGAGCT
Found at i:71909882 original size:13 final size:13
Alignment explanation
Indices: 71909843--71909889 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
71909833 TGGACACTGC
71909843 ACATACATAATAT
1 ACATACATAATAT
71909856 A-A-ACTATAATAT
1 ACATAC-ATAATAT
*
71909868 ACATACATGATAT
1 ACATACATAATAT
71909881 ACATACATA
1 ACATACATA
71909890 TTTTAAACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 2 0.07
12 9 0.31
13 16 0.55
14 2 0.07
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.30
Consensus pattern (13 bp):
ACATACATAATAT
Found at i:71909928 original size:29 final size:30
Alignment explanation
Indices: 71909893--71909949 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
71909883 ATACATATTT
**
71909893 TAAACAGTGCTAAAC-ATAAGATACATACA
1 TAAACAGTAATAAACAATAAGATACATACA
*
71909922 TAAACAGTAATAAACAATAATATACATA
1 TAAACAGTAATAAACAATAAGATACATA
71909950 AAAGTAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.56, C:0.14, G:0.07, T:0.23
Consensus pattern (30 bp):
TAAACAGTAATAAACAATAAGATACATACA
Found at i:71909974 original size:27 final size:26
Alignment explanation
Indices: 71909915--71909976 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
71909905 AACATAAGAT
71909915 ACATACATAAACAGTAATAAACAATA
1 ACATACATAAACAGTAATAAACAATA
* * *
71909941 ATATACATAAA-AGTAGTATACCATATA
1 ACATACATAAACAGTAATA-AACA-ATA
71909968 ACATACATA
1 ACATACATA
71909977 CATACATACA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 6 0.20
26 13 0.43
27 11 0.37
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.24
Consensus pattern (26 bp):
ACATACATAAACAGTAATAAACAATA
Found at i:71909977 original size:4 final size:4
Alignment explanation
Indices: 71909968--71910146 Score: 110
Period size: 4 Copynumber: 45.2 Consensus size: 4
71909958 ATACCATATA
71909968 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A-AT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
71910015 A-GT AATAT ACAT AACAT ACAT AATAT ACAT ACATT A-A- ACAT AACAT
1 ACAT -ACAT ACAT -ACAT ACAT -ACAT ACAT ACA-T ACAT ACAT -ACAT
* * * *
71910061 ACAT ACAT ATAT A-A- ACAGT A-AT AAAT ATA- ACAT ACAT AATAT ACAT
1 ACAT ACAT ACAT ACAT ACA-T ACAT ACAT ACAT ACAT ACAT -ACAT ACAT
* * *
71910107 ACAT A-AG A-AT A-AT ATACC ACAT AACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACA-T ACAT -ACAT ACAT ACAT ACAT A
71910147 ATAATAATAT
Statistics
Matches: 143, Mismatches: 15, Indels: 34
0.74 0.08 0.18
Matches are distributed among these distances:
2 2 0.01
3 18 0.13
4 99 0.69
5 24 0.17
ACGTcount: A:0.54, C:0.18, G:0.02, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:71910091 original size:33 final size:32
Alignment explanation
Indices: 71909992--71910103 Score: 117
Period size: 29 Copynumber: 3.6 Consensus size: 32
71909982 ATACATACAT
* * *
71909992 ACAT-ACATACATACATACAT-AATAGTAATAT
1 ACATAACATACATA-ATATATAAACAGTAATAA
* *
71910023 ACATAACATACATAATATACATACA-T--TAA
1 ACATAACATACATAATATATAAACAGTAATAA
71910052 ACATAACATACATACATATATAAACAGTAATAA
1 ACATAACATACATA-ATATATAAACAGTAATAA
*
71910085 ATATAACATACATAATATA
1 ACATAACATACATAATATA
71910104 CATACATAAG
Statistics
Matches: 67, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
29 16 0.24
30 9 0.13
31 10 0.15
32 16 0.24
33 16 0.24
ACGTcount: A:0.55, C:0.15, G:0.02, T:0.28
Consensus pattern (32 bp):
ACATAACATACATAATATATAAACAGTAATAA
Found at i:71910096 original size:53 final size:53
Alignment explanation
Indices: 71909972--71910146 Score: 131
Period size: 53 Copynumber: 3.4 Consensus size: 53
71909962 CATATAACAT
* *
71909972 ACAT-ACATACAT-ACATACATACATACATACATACATACATAATAGTAATAT
1 ACATAACAAACATAACATACATACATACATACATACATACATAATAGTAATAA
* *
71910023 ACATAACATACATAATATACATACATTA-A-ACATAACATACATACATA-T-ATAA
1 ACATAACAAACATAACATACATACA-TACATACAT-ACATACATA-ATAGTAATAA
* * * * *
71910075 ACAGTAATAAATATAACATACATA-AT--ATACATACATA-AGAATAAT-ATACC
1 ACA-TAACAAACATAACATACATACATACATACATACATACATAATAGTAATA-A
*
71910125 ACATAACATACAT-ACATACATA
1 ACATAACAAACATAACATACATA
71910147 ATAATAATAT
Statistics
Matches: 104, Mismatches: 11, Indels: 21
0.76 0.08 0.15
Matches are distributed among these distances:
48 12 0.12
49 13 0.12
50 9 0.09
51 9 0.09
52 19 0.18
53 37 0.36
54 5 0.05
ACGTcount: A:0.54, C:0.18, G:0.02, T:0.26
Consensus pattern (53 bp):
ACATAACAAACATAACATACATACATACATACATACATACATAATAGTAATAA
Found at i:71910140 original size:35 final size:34
Alignment explanation
Indices: 71909992--71910159 Score: 124
Period size: 35 Copynumber: 5.0 Consensus size: 34
71909982 ATACATACAT
* *
71909992 ACAT-ACATACATACATACATAATAGTAATAT--
1 ACATAACATACATACATACATAAGAATAATATAC
* *
71910023 ACATAACATACATA-AT--AT-A-CATACAT-TAA
1 ACATAACATACATACATACATAAGAATA-ATATAC
*
71910052 ACATAACATACATACATATATAAACAGTAATAAATATA-
1 ACATAACATACATACATACAT--A-AG-AAT-AATATAC
*
71910090 ACAT-ACATAATATACATACATAAGAATAATATACC
1 ACATAACAT-ACATACATACATAAGAATAATATA-C
*
71910125 ACATAACATACATACATACATAATAATAATATAC
1 ACATAACATACATACATACATAAGAATAATATAC
71910159 A
1 A
71910160 TAACATGCAT
Statistics
Matches: 111, Mismatches: 7, Indels: 35
0.73 0.05 0.23
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 16 0.14
30 2 0.02
31 6 0.05
32 11 0.10
33 6 0.05
34 5 0.05
35 28 0.25
36 6 0.05
37 4 0.04
38 18 0.16
39 3 0.03
ACGTcount: A:0.55, C:0.16, G:0.02, T:0.27
Consensus pattern (34 bp):
ACATAACATACATACATACATAAGAATAATATAC
Found at i:71915945 original size:32 final size:32
Alignment explanation
Indices: 71915873--71915945 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 32
71915863 AACTTACCTG
* * *
71915873 AAATCATGCCACAAACATTTAACTAACTTCTA
1 AAATCATGTCACAAACACTTAACTAACTCCTA
*
71915905 AAATCATGTCACAAACACTTAACTTACTCCTA
1 AAATCATGTCACAAACACTTAACTAACTCCTA
71915937 AAATCATGT
1 AAATCATGT
71915946 GAAAAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.42, C:0.25, G:0.04, T:0.29
Consensus pattern (32 bp):
AAATCATGTCACAAACACTTAACTAACTCCTA
Found at i:71917828 original size:67 final size:68
Alignment explanation
Indices: 71917595--71917898 Score: 226
Period size: 68 Copynumber: 4.5 Consensus size: 68
71917585 GCAATGATGG
* * * *
71917595 AACACAACTAGCAGACCTAAGCT-CTCAGCTGACATTATAAGAGCTCATAGAGTTAAGTTCGCAG
1 AACACAACTAGCAGACCTACGCTCCT-AGCTGACATTATAAAAGCTCACAGAGTTAAGCTCGCAG
*
71917659 CTCT
65 CTCC
* * * * * ** * * *
71917663 AACACAACTAGTAGACCTACACT-CTCAGCTGATC-TCATAAAGGTTTTCTG-GTTTAAGATTGT
1 AACACAACTAGCAGACCTACGCTCCT-AGCTGA-CATTATAAAAGCTCACAGAG-TTAAGCTCG-
* * *
71917725 AACCTCT
62 CAGCTCC
** * * * **
71917732 AA-AGCAGTTAGTAGACCTACACTCCTAGCTGACATTATAAGAGCTCGTAGAGTTAA-CTCGCAG
1 AACA-CAACTAGCAGACCTACGCTCCTAGCTGACATTATAAAAGCTCACAGAGTTAAGCTCGCAG
71917795 CTCC
65 CTCC
*
71917799 -ACTACAACTAGCAGACCTACGCTCCTAGCTGACATTATAAAAGCTCACAGAGTTAAGCTTGCAG
1 AAC-ACAACTAGCAGACCTACGCTCCTAGCTGACATTATAAAAGCTCACAGAGTTAAGCTCGCAG
71917863 CTCC
65 CTCC
* ** *
71917867 AACACAGCTAGTGGACCTACGCTCCAAGCTGA
1 AACACAACTAGCAGACCTACGCTCCTAGCTGA
71917899 TGACATAAAG
Statistics
Matches: 183, Mismatches: 42, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
66 1 0.01
67 50 0.27
68 84 0.46
69 45 0.25
70 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (68 bp):
AACACAACTAGCAGACCTACGCTCCTAGCTGACATTATAAAAGCTCACAGAGTTAAGCTCGCAGC
TCC
Found at i:71917907 original size:68 final size:67
Alignment explanation
Indices: 71917744--71917898 Score: 177
Period size: 67 Copynumber: 2.3 Consensus size: 67
71917734 AGCAGTTAGT
* * * * **
71917744 AGACCTACACTCCTAGCTGACATTATAAGAGCTCGTAGAGTTAACTCGCAGCTCCACTACAACTA
1 AGACCTACGCTCCAAGCTGACATCATAAAAGCTCACAGAGTTAACTCGCAGCTCCACTACAACTA
71917809 GC
66 GC
* * * *
71917811 AGACCTACGCTCCTAGCTGACATTATAAAAGCTCACAGAGTTAAGCTTGCAGCTCCAAC-ACAGC
1 AGACCTACGCTCCAAGCTGACATCATAAAAGCTCACAGAGTTAA-CTCGCAGCTCC-ACTACAAC
*
71917875 TAGT
64 TAGC
*
71917879 GGACCTACGCTCCAAGCTGA
1 AGACCTACGCTCCAAGCTGA
71917899 TGACATAAAG
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
67 40 0.52
68 35 0.45
69 2 0.03
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (67 bp):
AGACCTACGCTCCAAGCTGACATCATAAAAGCTCACAGAGTTAACTCGCAGCTCCACTACAACTA
GC
Found at i:71917955 original size:204 final size:205
Alignment explanation
Indices: 71917598--71917998 Score: 540
Period size: 204 Copynumber: 2.0 Consensus size: 205
71917588 ATGATGGAAC
* * *
71917598 ACAACTAGCAGACCTAAGCTCTCAGCTGACATTATAAGAGCTCATAGAGTTAAGTTCGCAGCTCT
1 ACAACTAGCAGACCTAAGCTCTCAGCTGACATTATAAAAGCTCACAGAGTTAAGTTCGCAGCTCC
* * * * * *
71917663 AACACAACTAGTAGACCTACACTCTCAGCTGATCTCATAAAGGTTTTCTGGTTTAAGATTGTAAC
66 AACACAACTAGTAGACCTACACTCTCAGCTGATCACATAAAGGGTTACCGATTTAAGATCGTAAC
* ** * * *
71917728 CTCTAAAGCAGTTAGTAGACCTACACTCCTAGCTGACATTATAAGAGCTCGTAGAGTT-AACTCG
131 CTCCAAAGCAGCCAGCAGACCTACACTCCTAGCTGACATTATAAAAGCTCGCAGAGTTAAACTCG
71917792 CAGCTCCACT
196 CAGCTCCACT
*
71917802 ACAACTAGCAGACCTACGCTC-CTAGCTGACATTATAAAAGCTCACAGAGTTAAGCTT-GCAGCT
1 ACAACTAGCAGACCTAAGCTCTC-AGCTGACATTATAAAAGCTCACAGAGTTAAG-TTCGCAGCT
* * * * *
71917865 CCAACACAGCTAGTGGACCTACGCTC-CAAGCTGATGACATAAAGGGTTACCGATTTAGGATCGT
64 CCAACACAACTAGTAGACCTACACTCTC-AGCTGATCACATAAAGGGTTACCGATTTAAGATCGT
* *
71917929 AACCTCCAAAGCAGCCAGCGGACCTACACTCCTAGCTGATATTATAAAAGCTCGCAGAGTTAAAC
128 AACCTCCAAAGCAGCCAGCAGACCTACACTCCTAGCTGACATTATAAAAGCTCGCAGAGTTAAAC
71917994 TCGCA
193 TCGCA
71917999 ACTTTAACAC
Statistics
Matches: 170, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
203 2 0.01
204 158 0.93
205 10 0.06
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (205 bp):
ACAACTAGCAGACCTAAGCTCTCAGCTGACATTATAAAAGCTCACAGAGTTAAGTTCGCAGCTCC
AACACAACTAGTAGACCTACACTCTCAGCTGATCACATAAAGGGTTACCGATTTAAGATCGTAAC
CTCCAAAGCAGCCAGCAGACCTACACTCCTAGCTGACATTATAAAAGCTCGCAGAGTTAAACTCG
CAGCTCCACT
Found at i:71921406 original size:29 final size:28
Alignment explanation
Indices: 71921374--71921431 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
71921364 AATTTTTTTT
*
71921374 AATAATTTAAATTGATTTTAATTATTAAA
1 AATAATTTAAATTAATTTTAATTA-TAAA
* * *
71921403 AATATTTTTATTTAATTTTAATTATAAA
1 AATAATTTAAATTAATTTTAATTATAAA
71921431 A
1 A
71921432 TATATTAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
AATAATTTAAATTAATTTTAATTATAAA
Found at i:71921443 original size:29 final size:29
Alignment explanation
Indices: 71921388--71921443 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
71921378 ATTTAAATTG
**
71921388 ATTTTAATTATTAAAAATATTTTTATTTA
1 ATTTTAATTATTAAAAATATTAATATTTA
71921417 ATTTTAATTA-TAAAATATATTAATATT
1 ATTTTAATTATTAAAA-ATATTAATATT
71921444 AATATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
ATTTTAATTATTAAAAATATTAATATTTA
Found at i:71925855 original size:13 final size:13
Alignment explanation
Indices: 71925837--71925863 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71925827 TAAGGATAAT
71925837 TCATCCAAAAATA
1 TCATCCAAAAATA
71925850 TCATCCAAAAATA
1 TCATCCAAAAATA
71925863 T
1 T
71925864 GCTAAGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (13 bp):
TCATCCAAAAATA
Found at i:71926206 original size:17 final size:18
Alignment explanation
Indices: 71926175--71926216 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
71926165 TAATTTAACC
*
71926175 ATTTTTATTTCTATTAT-
1 ATTTTTGTTTCTATTATA
* *
71926192 ATTTTTGTTTTTATTTTA
1 ATTTTTGTTTCTATTATA
71926210 ATTTTTG
1 ATTTTTG
71926217 CATTCTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (18 bp):
ATTTTTGTTTCTATTATA
Found at i:71929727 original size:5 final size:5
Alignment explanation
Indices: 71929717--71929766 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
71929707 CTTTTCTTAG
* *
71929717 TTTTA TTTTA TTTTA TTTTA TTATT- TGTTA TATTA -TTTA TTTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA -TTTTA TTTTA
71929767 CTAATCTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
4 5 0.13
5 27 0.71
6 6 0.16
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:71933949 original size:25 final size:24
Alignment explanation
Indices: 71933921--71933970 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
71933911 AATTCCCGCG
71933921 ACTT-CTTGAAGAAAATCGACAAGAA
1 ACTTGCTTGAA-AAAATC-ACAAGAA
**
71933946 ACTTGCTTTTAAAAATCACAAGAA
1 ACTTGCTTGAAAAAATCACAAGAA
71933970 A
1 A
71933971 GCAATCTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 8 0.36
25 10 0.45
26 4 0.18
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (24 bp):
ACTTGCTTGAAAAAATCACAAGAA
Found at i:71941570 original size:39 final size:40
Alignment explanation
Indices: 71941527--71941629 Score: 109
Period size: 45 Copynumber: 2.5 Consensus size: 40
71941517 TTCCATTATG
71941527 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
71941566 CTATTACGCCTCTATTCTATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATTC-----CATTCAACCAAACACAAGATTTA
71941611 CTATTACACCTCTATTCCA
1 CTATTACACCTCTATTCCA
71941630 ATACACCTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
39 16 0.31
40 2 0.04
44 16 0.31
45 18 0.35
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:71941636 original size:16 final size:16
Alignment explanation
Indices: 71941615--71941650 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
71941605 GATTTGCTAT
*
71941615 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
71941631 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
71941647 TACA
1 TACA
71941651 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:71942387 original size:22 final size:23
Alignment explanation
Indices: 71942338--71942388 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
71942328 TTATTATTTG
*
71942338 TTTTATAATATTTTATATTTATA
1 TTTTATAATATTTTATATATATA
*
71942361 TTTTA-AATGTTTTATA-ATATA
1 TTTTATAATATTTTATATATATA
71942382 TGTTTAT
1 T-TTTAT
71942389 TGAAAAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 5 0.21
22 14 0.58
23 5 0.21
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATAATATTTTATATATATA
Found at i:71942442 original size:84 final size:83
Alignment explanation
Indices: 71942324--71942484 Score: 241
Period size: 84 Copynumber: 1.9 Consensus size: 83
71942314 TATTTTTTAT
* * * * *
71942324 TTGTTTATTATTTGTTTTATAATATTTTATATTTATATTTTAAATGTTTTATAATATATGTTTAT
1 TTGTTTATTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATATGTTTAT
71942389 TGAAAAGTTTTTTTTAAAA
66 T-AAAAGTTTTTTTTAAAA
* *
71942408 TTGTTTATTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATTTTTTTAT
1 TTGTTTATTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATATGTTTAT
*
71942473 TCAAAGTTTTTT
66 TAAAAGTTTTTT
71942485 AATTATATTT
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
83 10 0.14
84 59 0.86
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.61
Consensus pattern (83 bp):
TTGTTTATTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATATGTTTAT
TAAAAGTTTTTTTTAAAA
Found at i:71942627 original size:10 final size:10
Alignment explanation
Indices: 71942595--71942712 Score: 60
Period size: 9 Copynumber: 12.5 Consensus size: 10
71942585 TTGAATAAAT
71942595 AAATATTATA
1 AAATATTATA
*
71942605 AAACATT-TA
1 AAATATTATA
71942614 AAATATTATA
1 AAATATTATA
71942624 AAATA--AT-
1 AAATATTATA
*
71942631 AAATAATA-A
1 AAATATTATA
*
71942640 AAAAATT-TA
1 AAATATTATA
*
71942649 AAA-ATGT-TT
1 AAATAT-TATA
* *
71942658 GAATA-AAT-
1 AAATATTATA
71942666 AAATATTATA
1 AAATATTATA
71942676 AAATATT-TA
1 AAATATTATA
*
71942685 AAATATAAATTTA
1 AAATAT---TATA
71942698 AAATATTATA
1 AAATATTATA
71942708 AAATA
1 AAATA
71942713 AATGAGAAAC
Statistics
Matches: 84, Mismatches: 10, Indels: 28
0.69 0.08 0.23
Matches are distributed among these distances:
7 5 0.06
8 8 0.10
9 33 0.39
10 29 0.35
12 1 0.01
13 8 0.10
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.36
Consensus pattern (10 bp):
AAATATTATA
Found at i:71942653 original size:36 final size:36
Alignment explanation
Indices: 71942557--71942710 Score: 117
Period size: 35 Copynumber: 4.4 Consensus size: 36
71942547 TTACATACTT
* ** *
71942557 TAAA-ATTATAAATATAATTAAAAAACGTTTGAATAAA
1 TAAATATTATAAA-A-AATTTAAAAATATTTAAATAAA
*
71942594 TAAATATTATAAAACATTT-AAAATATTATAAA-ATAA
1 TAAATATTATAAAAAATTTAAAAATATT-TAAATA-AA
* * *
71942630 TAAATAATA-AAAAAATTTAAAAATGTTTGAATAAA
1 TAAATATTATAAAAAATTTAAAAATATTTAAATAAA
* **
71942665 TAAATATTATAAAATATTT-AAAATA--TAAATTTA
1 TAAATATTATAAAAAATTTAAAAATATTTAAATAAA
71942698 -AAATATTATAAAA
1 TAAATATTATAAAA
71942711 TAAATGAGAA
Statistics
Matches: 96, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
32 13 0.14
33 5 0.05
35 33 0.34
36 32 0.33
37 5 0.05
38 8 0.08
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (36 bp):
TAAATATTATAAAAAATTTAAAAATATTTAAATAAA
Found at i:71942686 original size:9 final size:10
Alignment explanation
Indices: 71942666--71942712 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
71942656 TTGAATAAAT
71942666 AAATATTATA
1 AAATATTATA
71942676 AAATATT-TA
1 AAATATTATA
*
71942685 AAATATAAATTTA
1 AAATAT---TATA
71942698 AAATATTATA
1 AAATATTATA
71942708 AAATA
1 AAATA
71942713 AATGAGAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
9 8 0.25
10 15 0.47
12 1 0.03
13 8 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAATATTATA
Found at i:71942688 original size:35 final size:35
Alignment explanation
Indices: 71942578--71942688 Score: 127
Period size: 35 Copynumber: 3.1 Consensus size: 35
71942568 ATATAATTAA
* *
71942578 AAAACGTTTGAATAAATAAATATTATAAAACATTT
1 AAAATGTTTGAATAAATAAATATTATAAAAAATTT
* * *
71942613 AAAATATTAT-AAAATAATAAATAATA-AAAAAATTT
1 AAAATGTT-TGAATA-AATAAATATTATAAAAAATTT
*
71942648 AAAAATGTTTGAATAAATAAATATTATAAAATATTT
1 -AAAATGTTTGAATAAATAAATATTATAAAAAATTT
71942684 AAAAT
1 AAAAT
71942689 ATAAATTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
35 33 0.53
36 29 0.47
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (35 bp):
AAAATGTTTGAATAAATAAATATTATAAAAAATTT
Found at i:71942689 original size:27 final size:27
Alignment explanation
Indices: 71942614--71942715 Score: 85
Period size: 26 Copynumber: 4.0 Consensus size: 27
71942604 AAAACATTTA
* * *
71942614 AAATATTATAAAATAATAAATAATAAAA
1 AAATATTATAAAATATTTAA-AATAAAT
* *
71942642 AAAT-TTA-AAAATGTTT-GAATAAAT
1 AAATATTATAAAATATTTAAAATAAAT
71942666 AAATATTATAAAATATTTAAAAT--AT
1 AAATATTATAAAATATTTAAAATAAAT
71942691 -AA-ATT-TAAAATATTATAAAATAAAT
1 AAATATTATAAAATATT-TAAAATAAAT
71942716 GAGAAACATT
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
22 9 0.15
23 9 0.15
24 12 0.20
25 7 0.11
26 14 0.23
27 6 0.10
28 4 0.07
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (27 bp):
AAATATTATAAAATATTTAAAATAAAT
Found at i:71943431 original size:19 final size:18
Alignment explanation
Indices: 71943409--71943464 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
71943399 AAAAAATTCA
71943409 AAAAGTTCAAAATAATTT-T
1 AAAA-TTCAAAAT-ATTTAT
*
71943428 AAAATCCAAAATATTTAT
1 AAAATTCAAAATATTTAT
71943446 AAAAATTCAAAA-ATTTAT
1 -AAAATTCAAAATATTTAT
71943464 A
1 A
71943465 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 5 0.15
18 14 0.42
19 14 0.42
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAATTCAAAATATTTAT
Found at i:71943461 original size:18 final size:18
Alignment explanation
Indices: 71943385--71943464 Score: 57
Period size: 18 Copynumber: 4.7 Consensus size: 18
71943375 TCCCTCTCAA
71943385 CAAAAATTTA-AAAAA--
1 CAAAAATTTATAAAAATT
* *
71943400 -AAAAATTCA-AAAAGTT
1 CAAAAATTTATAAAAATT
*
71943416 CAAAATAATTT-T-AAAATC
1 C-AAA-AATTTATAAAAATT
71943434 CAAAATATTTATAAAAATT
1 CAAAA-ATTTATAAAAATT
71943453 CAAAAATTTATA
1 CAAAAATTTATA
71943465 TTTTTAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 15
0.70 0.08 0.21
Matches are distributed among these distances:
14 12 0.24
16 1 0.02
17 7 0.14
18 16 0.32
19 14 0.28
ACGTcount: A:0.61, C:0.07, G:0.01, T:0.30
Consensus pattern (18 bp):
CAAAAATTTATAAAAATT
Found at i:71943475 original size:18 final size:20
Alignment explanation
Indices: 71943454--71943497 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
71943444 ATAAAAATTC
*
71943454 AAAAATTTAT-AT-TTTTAA
1 AAAAATTTATAATAATTTAA
71943472 AAAAA-TTATAATAATTTAA
1 AAAAATTTATAATAATTTAA
71943491 AAAAATT
1 AAAAATT
71943498 AAAGAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.18
18 7 0.32
19 10 0.45
20 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAAATTTATAATAATTTAA
Found at i:71943505 original size:21 final size:20
Alignment explanation
Indices: 71943467--71943521 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
71943457 AATTTATATT
*
71943467 TTTAAAAAAATT--ATAATAA
1 TTTAAAAAAATTAAAGAAT-A
71943486 TTTAAAAAAATTAAAGAATA
1 TTTAAAAAAATTAAAGAATA
*
71943506 TATAAAGAAAATTAAA
1 TTTAAA-AAAATTAAA
71943522 ATTTTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 12 0.39
20 6 0.19
21 13 0.42
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (20 bp):
TTTAAAAAAATTAAAGAATA
Found at i:71943713 original size:14 final size:14
Alignment explanation
Indices: 71943694--71943720 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
71943684 TATTGTAAAC
71943694 AAATTTTAATTTTA
1 AAATTTTAATTTTA
71943708 AAATTTTAATTTT
1 AAATTTTAATTTT
71943721 TAATTCAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AAATTTTAATTTTA
Found at i:71952492 original size:27 final size:27
Alignment explanation
Indices: 71952462--71952516 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
71952452 ATCTCATACA
71952462 AAGAGTAAAATAATGCATACAAAGTGT
1 AAGAGTAAAATAATGCATACAAAGTGT
71952489 AAGAGTAAAATAATGCATACAAAGTGT
1 AAGAGTAAAATAATGCATACAAAGTGT
71952516 A
1 A
71952517 CACCAATGCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.53, C:0.07, G:0.18, T:0.22
Consensus pattern (27 bp):
AAGAGTAAAATAATGCATACAAAGTGT
Found at i:71953974 original size:31 final size:29
Alignment explanation
Indices: 71953939--71954004 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
71953929 GTGATCACTT
71953939 CGTAACAAAATAATAGCATAAGTGACTAAAA
1 CGTAACAAAATAA-A-CATAAGTGACTAAAA
***
71953970 CGTAACATTTTAAACATAAGTGACTAAAA
1 CGTAACAAAATAAACATAAGTGACTAAAA
*
71953999 TGTAAC
1 CGTAAC
71954005 CTGAGGCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 20 0.65
30 1 0.03
31 10 0.32
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.24
Consensus pattern (29 bp):
CGTAACAAAATAAACATAAGTGACTAAAA
Found at i:71955351 original size:17 final size:17
Alignment explanation
Indices: 71955332--71955364 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
71955322 TACAAATAAT
71955332 TTTTAATA-TTTTAAAA
1 TTTTAATAGTTTTAAAA
71955348 TTTTAATAGTTTTAAAA
1 TTTTAATAGTTTTAAAA
71955365 AAATCATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTTAATAGTTTTAAAA
Found at i:71962329 original size:46 final size:46
Alignment explanation
Indices: 71962276--71962595 Score: 401
Period size: 46 Copynumber: 7.0 Consensus size: 46
71962266 GCTCTCTAAA
* *
71962276 ATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
71962322 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
71962368 ATGAAAAGAATAAGACCATGGTTGAAATATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** ** * * *
71962414 GGGAAATGAAAAAGACCATGGTTGAAAGATACCATGACAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
71962460 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACTTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
71962506 ATGAAAAG-GATAAGACCATGGTTGAAAGATATCATGGCAACATGAC
1 ATGAAATGAG-TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
71962552 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
71962596 TCAAAGATAA
Statistics
Matches: 238, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.00
46 236 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:71962526 original size:138 final size:138
Alignment explanation
Indices: 71962287--71962580 Score: 444
Period size: 138 Copynumber: 2.1 Consensus size: 138
71962277 TGAAATGCGT
* * * **
71962287 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGACAACATGACATGAAACGAATAAGACCATGGTTGAAAGAT
* * *
71962352 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAATATACCATGGCAACATGACGGG
66 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
71962417 AAATGAAA
131 AAATGAAA
* *
71962425 AAGACCATGGTTGAAAGATACCATGACAGCGTGACATGAAACGAATAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGACAACATGACATGAAACGAATAAGACCATGGTTGAAAGAT
* * *
71962490 ACCATGGCAACTTGACATGAAAAGGATAAGACCATGGTTGAAAGATATCATGGCAACATGACAGA
66 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
**
71962555 AAATGAGT
131 AAATGAAA
*
71962563 AAGACCATAGTTGAAAGA
1 AAGACCATGGTTGAAAGA
71962581 CACTATGGCA
Statistics
Matches: 140, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 140 1.00
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.19
Consensus pattern (138 bp):
AAGACCATGGTTGAAAGATACCATGACAACATGACATGAAACGAATAAGACCATGGTTGAAAGAT
ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
AAATGAAA
Found at i:71964006 original size:29 final size:29
Alignment explanation
Indices: 71963934--71964015 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 29
71963924 TAAATAGTAC
* *
71963934 ATTTATACATGAACTTTAGTCTAATGTGTA
1 ATTTATACATGAACTTTAAT-TAATGTGCA
* *
71963964 ATTTGATAAATGAACTTTAATTTA-GTGCA
1 ATTT-ATACATGAACTTTAATTAATGTGCA
*
71963993 ATTATATACATGAAACTTGAATT
1 ATT-TATACATG-AACTTTAATT
71964016 GTGTTTCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
29 13 0.30
30 16 0.37
31 14 0.33
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (29 bp):
ATTTATACATGAACTTTAATTAATGTGCA
Found at i:71964258 original size:2 final size:2
Alignment explanation
Indices: 71964251--71964277 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
71964241 ACGAAGAATA
71964251 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
71964278 ATTCTAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:71969521 original size:20 final size:20
Alignment explanation
Indices: 71969472--71969523 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
71969462 CCCACCCAAC
* * *
71969472 TTCACCAATTCCTTCCCATA
1 TTCATCAATTACTTCCCACA
71969492 TTCATCAATTACTTCCCTACA
1 TTCATCAATTACTTCCC-ACA
71969513 TTCAT-AATTAC
1 TTCATCAATTAC
71969524 AATAACCAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.38
Consensus pattern (20 bp):
TTCATCAATTACTTCCCACA
Found at i:71971783 original size:37 final size:38
Alignment explanation
Indices: 71971731--71971811 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 38
71971721 TTCTAATTCT
* *
71971731 AATTTTTATATTAATTTGAATATTTAGTTTAAAGTTAA
1 AATTTTTACATTAATTTGAATAATTAGTTTAAAGTTAA
71971769 AATTTTT-CATTAATTTGAATAATTAGTTTAAAGTTAA
1 AATTTTTACATTAATTTGAATAATTAGTTTAAAGTTAA
71971806 AATTTT
1 AATTTT
71971812 CATAGAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 34 0.83
38 7 0.17
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (38 bp):
AATTTTTACATTAATTTGAATAATTAGTTTAAAGTTAA
Found at i:71975924 original size:15 final size:15
Alignment explanation
Indices: 71975885--71975916 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
71975875 TATGAATGCA
71975885 AAATATAAAAGACAT
1 AAATATAAAAGACAT
*
71975900 AAATACAAAAGACAT
1 AAATATAAAAGACAT
71975915 AA
1 AA
71975917 TAGTAAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATATAAAAGACAT
Found at i:71984298 original size:141 final size:141
Alignment explanation
Indices: 71984044--71984325 Score: 564
Period size: 141 Copynumber: 2.0 Consensus size: 141
71984034 ACTACTCGAT
71984044 TCAGATCTGTGATGATTGGAATGTAGAACTGACAATAAATAAAAGGAAAGGAAAGGTGATTGAGG
1 TCAGATCTGTGATGATTGGAATGTAGAACTGACAATAAATAAAAGGAAAGGAAAGGTGATTGAGG
71984109 AGCTTTAAGGGGAGAAAATGGTGTGAAAAATGGGCAGTAACTATTCAACTAACAATTGATGGTAG
66 AGCTTTAAGGGGAGAAAATGGTGTGAAAAATGGGCAGTAACTATTCAACTAACAATTGATGGTAG
71984174 ATGCGGCCATA
131 ATGCGGCCATA
71984185 TCAGATCTGTGATGATTGGAATGTAGAACTGACAATAAATAAAAGGAAAGGAAAGGTGATTGAGG
1 TCAGATCTGTGATGATTGGAATGTAGAACTGACAATAAATAAAAGGAAAGGAAAGGTGATTGAGG
71984250 AGCTTTAAGGGGAGAAAATGGTGTGAAAAATGGGCAGTAACTATTCAACTAACAATTGATGGTAG
66 AGCTTTAAGGGGAGAAAATGGTGTGAAAAATGGGCAGTAACTATTCAACTAACAATTGATGGTAG
71984315 ATGCGGCCATA
131 ATGCGGCCATA
71984326 ACAAAGAAAG
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.39, C:0.09, G:0.28, T:0.23
Consensus pattern (141 bp):
TCAGATCTGTGATGATTGGAATGTAGAACTGACAATAAATAAAAGGAAAGGAAAGGTGATTGAGG
AGCTTTAAGGGGAGAAAATGGTGTGAAAAATGGGCAGTAACTATTCAACTAACAATTGATGGTAG
ATGCGGCCATA
Found at i:71993184 original size:5 final size:5
Alignment explanation
Indices: 71993174--71993211 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
71993164 AGTTTTTGTG
*
71993174 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAC AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
71993212 GAACATACAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:71994119 original size:23 final size:23
Alignment explanation
Indices: 71994074--71994120 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
71994064 AATGGTTGAC
* *
71994074 AAATATTATATAATAAAATAGTA
1 AAATATTATAAAAAAAAATAGTA
71994097 AAATATTA-AAAAAAAAATAAGTA
1 AAATATTATAAAAAAAAAT-AGTA
71994120 A
1 A
71994121 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (23 bp):
AAATATTATAAAAAAAAATAGTA
Found at i:71995249 original size:9 final size:9
Alignment explanation
Indices: 71995235--71995267 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
71995225 TCATATCTCC
71995235 ATATATCAA
1 ATATATCAA
71995244 ATATATCAA
1 ATATATCAA
71995253 ATATATCAA
1 ATATATCAA
71995262 ATATAT
1 ATATAT
71995268 AACCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (9 bp):
ATATATCAA
Found at i:72004217 original size:42 final size:42
Alignment explanation
Indices: 72004170--72004281 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
72004160 ATATGTGTTA
*
72004170 TCGTGTAGGACCACGTTTGGGACGTTGGCATC-ATATTTGATT
1 TCGTGTAAGACCAC-TTTGGGACGTTGGCATCGATATTTGATT
**
72004212 TCGTGTAAGACC-CTATCTGGGACACTGGCATCGATATTTGATT
1 TCGTGTAAGACCACT-T-TGGGACGTTGGCATCGATATTTGATT
* * *
72004255 ACATGTAAGACCACATCTGGGACGTTG
1 TCGTGTAAGACCAC-TTTGGGACGTTG
72004282 ACATTGTACG
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
40 1 0.02
41 2 0.04
42 24 0.42
43 28 0.49
44 1 0.02
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACTTTGGGACGTTGGCATCGATATTTGATT
Found at i:72004262 original size:43 final size:42
Alignment explanation
Indices: 72004195--72004277 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 42
72004185 TTTGGGACGT
* *
72004195 TGGCATCATATTTGATTTCGTGTAAGACC-CTATCTGGGACAC
1 TGGCATCATATTTGATTACATGTAAGACCAC-ATCTGGGACAC
72004237 TGGCATCGATATTTGATTACATGTAAGACCACATCTGGGAC
1 TGGCATC-ATATTTGATTACATGTAAGACCACATCTGGGAC
72004278 GTTGACATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 7 0.19
43 29 0.78
44 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (42 bp):
TGGCATCATATTTGATTACATGTAAGACCACATCTGGGACAC
Found at i:72005112 original size:24 final size:23
Alignment explanation
Indices: 72005068--72005112 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
72005058 TTATGGAATG
*
72005068 ACATGAATTGGTATGTGTTATGA
1 ACATGAATTGGTATGTATTATGA
72005091 ACATGAGATTGGT-TGATATTAT
1 ACATGA-ATTGGTATG-TATTAT
72005113 CATAGTATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.31, C:0.04, G:0.24, T:0.40
Consensus pattern (23 bp):
ACATGAATTGGTATGTATTATGA
Found at i:72010413 original size:23 final size:23
Alignment explanation
Indices: 72010365--72010464 Score: 92
Period size: 23 Copynumber: 4.3 Consensus size: 23
72010355 CCACAAATTA
* * *
72010365 TTTATAGAATACACAACATAGAC
1 TTTATAGAATACGCCACATAGGC
*
72010388 TTTATAGAATACGCCACACAGGC
1 TTTATAGAATACGCCACATAGGC
* * *
72010411 TTTACAGAATATGTCACATAGGC
1 TTTATAGAATACGCCACATAGGC
* * * * *
72010434 TTTATAAAATATGACATAAAGGC
1 TTTATAGAATACGCCACATAGGC
72010457 TTTATAGA
1 TTTATAGA
72010465 GAATTATGTC
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (23 bp):
TTTATAGAATACGCCACATAGGC
Found at i:72010901 original size:12 final size:12
Alignment explanation
Indices: 72010884--72010908 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72010874 ATGATACTTC
72010884 ATACACACACAT
1 ATACACACACAT
72010896 ATACACACACAT
1 ATACACACACAT
72010908 A
1 A
72010909 CATTCACTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (12 bp):
ATACACACACAT
Found at i:72012774 original size:18 final size:17
Alignment explanation
Indices: 72012753--72012808 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
72012743 AAAAATTGAA
*
72012753 ATAACTTTTAAAATATTT
1 ATAACTTTTAAAAT-TTC
** *
72012771 ATAAAAATTTCAAATTTC
1 AT-AACTTTTAAAATTTC
72012789 ATAACTTTTAAAATTT-
1 ATAACTTTTAAAATTTC
72012805 ATAA
1 ATAA
72012809 AAAATTAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
16 4 0.13
17 11 0.37
18 6 0.20
19 9 0.30
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (17 bp):
ATAACTTTTAAAATTTC
Found at i:72015066 original size:164 final size:164
Alignment explanation
Indices: 72014795--72015777 Score: 1948
Period size: 164 Copynumber: 6.0 Consensus size: 164
72014785 TGTGTTATGT
*
72014795 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTT
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
72014860 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
72014925 TGATATGTGAGTAATATATATATGCCTCTTGCAA
131 TGATATGTGAGTAATATATATATGCCTCTTGCAA
72014959 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
72015024 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
72015089 TGATATGTGAGTAATATATATATGCCTCTTGCAA
131 TGATATGTGAGTAATATATATATGCCTCTTGCAA
72015123 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
72015188 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
72015253 TGATATGTGAGTAATATATATATGCCTCTTGCAA
131 TGATATGTGAGTAATATATATATGCCTCTTGCAA
72015287 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
72015352 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
72015417 TGATATGTGAGTAATATATATATGCCTCTTGCAA
131 TGATATGTGAGTAATATATATATGCCTCTTGCAA
72015451 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
72015516 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
72015581 TGATATGTGAGTAATATATATATGCCTCTTGCAA
131 TGATATGTGAGTAATATATATATGCCTCTTGCAA
*
72015615 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTT
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
72015680 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
72015745 TGATATGTGAGTAATATATATATGCCTCTTGCA
131 TGATATGTGAGTAATATATATATGCCTCTTGCA
72015778 TCTGTATTTC
Statistics
Matches: 817, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
164 817 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (164 bp):
GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTC
GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
TGATATGTGAGTAATATATATATGCCTCTTGCAA
Found at i:72024104 original size:48 final size:47
Alignment explanation
Indices: 72024017--72024440 Score: 331
Period size: 48 Copynumber: 8.8 Consensus size: 47
72024007 ATACTAGGGT
* * *
72024017 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCGACATTTA
* * **
72024065 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC-AGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGT-TTGGACATGGCATCGA-CATTTA
* * **
72024113 TAT-ATGAGCTAGTGTAAGACCATGTCTGAGACATGGCATCGACCTCAA
1 TATGA-GAGCTAGTGTAAGACCATGTTTG-GACATGGCATCGACATTTA
* * *
72024161 CATGGGAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTT-GG-ACATGGCATCGACATTTA
* * * *
72024210 TATGAGAGCTAGTGTAAGACTAT-TTCTGGGACATGGCATCGGCCTTGA
1 TATGAGAGCTAGTGTAAGACCATGTT-T-GGACATGGCATCGACATTTA
* * * * * *
72024258 TATGTGAGCCAGTGTAAGA-TATGTATGGAACATGGCATTGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCGACATTTA
* * * *
72024305 TATGAGAGGTAGTGTAAGATCATGTTTGAGACATGGCATCGGTC-TCGTCA
1 TATGAGAGCTAGTGTAAGACCATGTTTG-GACATGGCATC-GACAT--TTA
* * *
72024355 TGTG-G-GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCGACAT--TTA
* * *
72024403 TATGAGAGCTAATATAAGACCATGTGTAGGACATGGCA
1 TATGAGAGCTAGTGTAAGACCATGT-TTGGACATGGCA
72024441 ACGGCATCTT
Statistics
Matches: 307, Mismatches: 48, Indels: 40
0.78 0.12 0.10
Matches are distributed among these distances:
46 2 0.01
47 41 0.13
48 184 0.60
49 48 0.16
50 29 0.09
51 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (47 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGACATGGCATCGACATTTA
Found at i:72024338 original size:95 final size:95
Alignment explanation
Indices: 72024017--72024445 Score: 377
Period size: 96 Copynumber: 4.4 Consensus size: 95
72024007 ATACTAGGGT
* * * * * ** * *
72024017 TATGTGAGCCAGTGTAAGACCATGTTTG-GAACATAGCATCGACATTTATATGAGAGCTAGTGTA
1 TATGAGAGCTAGTGTAAGA-CATGTTTGAG-ACATGGCATCGGCCTCGATATGTGAGCCAGTGTA
* * * **
72024081 AGACCATGTCTAGG-ACATGGCATCAGCCTCGA
64 AGACCATGT-TTGGAACATGGCATCGGCATTTA
* * * * *
72024113 TAT-ATGAGCTAGTGTAAGACCATGTCTGAGACATGGCATCGACCTCAACATGGGAGCCAGTGTA
1 TATGA-GAGCTAGTGTAAGA-CATGTTTGAGACATGGCATCGGCCTCGATATGTGAGCCAGTGTA
*
72024177 AGACCATGTTTGGGAACATGGCATCGACATTTA
64 AGACCATGTTT-GGAACATGGCATCGGCATTTA
* *
72024210 TATGAGAGCTAGTGTAAGACTAT-TTCTGGGACATGGCATCGGCCTTGATATGTGAGCCAGTGTA
1 TATGAGAGCTAGTGTAAGAC-ATGTT-TGAGACATGGCATCGGCCTCGATATGTGAGCCAGTGTA
* * *
72024274 AGA-TATGTATGGAACATGGCATTGGCATTTA
64 AGACCATGTTTGGAACATGGCATCGGCATTTA
* * * *
72024305 TATGAGAGGTAGTGTAAGATCATGTTTGAGACATGGCATCGGTCTCG-TCATGTGGGCTAGTGTA
1 TATGAGAGCTAGTGTAAGA-CATGTTTGAGACATGGCATCGGCCTCGAT-ATGTGAGCCAGTGTA
*
72024369 AGACCATGTTTGGAACATGGCATCGGCATCGATA
64 AGACCATGTTTGGAACATGGCATCGGCAT--TTA
* * * *
72024403 TATGAGAGCTAATATAAGACCATGTGT-AGGACATGGCAACGGC
1 TATGAGAGCTAGTGTAAGA-CATGTTTGA-GACATGGCATCGGC
72024446 ATCTTACCCT
Statistics
Matches: 275, Mismatches: 44, Indels: 26
0.80 0.13 0.08
Matches are distributed among these distances:
94 1 0.00
95 74 0.27
96 94 0.34
97 69 0.25
98 37 0.13
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.27
Consensus pattern (95 bp):
TATGAGAGCTAGTGTAAGACATGTTTGAGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAG
ACCATGTTTGGAACATGGCATCGGCATTTA
Found at i:72024718 original size:19 final size:19
Alignment explanation
Indices: 72024690--72024732 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
72024680 TTATGGGTAT
72024690 GATG-TTACTTGGTAAAAC
1 GATGTTTACTTGGTAAAAC
72024708 GATGTTTACTTGGTAAAAC
1 GATGTTTACTTGGTAAAAC
72024727 GATGTT
1 GATGTT
72024733 AACTATTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.37
Consensus pattern (19 bp):
GATGTTTACTTGGTAAAAC
Found at i:72026688 original size:43 final size:43
Alignment explanation
Indices: 72026636--72026721 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
72026626 CTCACATGAC
*
72026636 CCAGAACTTTTCACATGGCTTGCCACACTGCAGTATCTCCCTT
1 CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
72026679 CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
1 CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
72026722 ACAGCTTAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.30
Consensus pattern (43 bp):
CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
Found at i:72029861 original size:44 final size:44
Alignment explanation
Indices: 72029811--72029896 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
72029801 CAACAATCGG
72029811 TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGCAT
1 TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGCAT
*
72029855 TCTACTAGTGGAATCTGAATCTTGCATTGAGTTATATTTTGC
1 TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGC
72029897 CAGGGCTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (44 bp):
TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGCAT
Found at i:72035308 original size:46 final size:47
Alignment explanation
Indices: 72035070--72035344 Score: 158
Period size: 46 Copynumber: 5.8 Consensus size: 47
72035060 TGTATAATGT
* * *
72035070 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-ACGTCAAG-T
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTC-TCAAGAC
* * * * * *
72035117 CGATGTCATGTCCCAGACATGGTCTTACACT-GAATTTAACATATCCATG-C
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAG-CTCT--CGTCT-CAAGAC
* * * **
72035167 CGATGCCATGTCCTAGACATGGTTTTACACT-GACACATC-T-TGTAG-C
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAG-CTC-TCGTCTCAAGAC
* * * * *
72035213 CAATG-CATGTCCCAGACATGTCTTACATTGGCT-TACATCTCAAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAAGAC
* * *
72035259 CGATG-TATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAATAC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAGAC
*
72035305 CGATGCCATGTCCCAGACATGGACTTACACTAGCTCTCGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGT
72035345 AATGTGGTTG
Statistics
Matches: 180, Mismatches: 34, Indels: 27
0.75 0.14 0.11
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 10 0.06
45 17 0.09
46 49 0.27
47 46 0.26
48 19 0.11
49 3 0.02
50 33 0.18
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAGAC
Found at i:72072309 original size:36 final size:36
Alignment explanation
Indices: 72072267--72072339 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
72072257 ACTCGCTTCA
72072267 GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
1 GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
* * *
72072303 GGATTTGTAGCTAACTTCGGATTATGGTTTTAGGAT
1 GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
72072339 G
1 G
72072340 AAACAAAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.08, G:0.27, T:0.40
Consensus pattern (36 bp):
GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
Found at i:72078549 original size:29 final size:29
Alignment explanation
Indices: 72078507--72078568 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
72078497 GAATGTTGAG
72078507 GCTAAGATTGACGATGAAGATTAAGTTAT
1 GCTAAGATTGACGATGAAGATTAAGTTAT
72078536 GCTAAGATTGACGATGAAGATTAAGTTAT
1 GCTAAGATTGACGATGAAGATTAAGTTAT
72078565 GCTA
1 GCTA
72078569 TTATTATGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (29 bp):
GCTAAGATTGACGATGAAGATTAAGTTAT
Found at i:72080687 original size:21 final size:21
Alignment explanation
Indices: 72080663--72080714 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
72080653 AAGGGACATG
72080663 CCCGTGTGACCCTACGACACA
1 CCCGTGTGACCCTACGACACA
72080684 CCCGTGTGACCCTACGACACA
1 CCCGTGTGACCCTACGACACA
72080705 CCCGTGTGAC
1 CCCGTGTGAC
72080715 AAGCCGTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.21, C:0.42, G:0.21, T:0.15
Consensus pattern (21 bp):
CCCGTGTGACCCTACGACACA
Found at i:72084453 original size:17 final size:17
Alignment explanation
Indices: 72084417--72084454 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
72084407 ACCACCCTAT
*
72084417 TTTATTTTATGTTTGAA
1 TTTATTTTATGTTAGAA
72084434 TTTATTTATATGTTAG-A
1 TTTATTT-TATGTTAGAA
72084451 TTTA
1 TTTA
72084455 AGTAGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (17 bp):
TTTATTTTATGTTAGAA
Found at i:72088411 original size:21 final size:21
Alignment explanation
Indices: 72088385--72088427 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
72088375 CCAGTCCAGG
72088385 TTAAATTCTAATTGTAACATA
1 TTAAATTCTAATTGTAACATA
72088406 TTAAATTCTAATTGTAACATA
1 TTAAATTCTAATTGTAACATA
72088427 T
1 T
72088428 GCTCGAGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (21 bp):
TTAAATTCTAATTGTAACATA
Found at i:72099553 original size:14 final size:14
Alignment explanation
Indices: 72099534--72099568 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
72099524 TGTTTGTCAG
*
72099534 TAAAATATTTTTTA
1 TAAAATAATTTTTA
72099548 TAAAATAATTTTTA
1 TAAAATAATTTTTA
*
72099562 AAAAATA
1 TAAAATA
72099569 GCTTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TAAAATAATTTTTA
Found at i:72107059 original size:43 final size:43
Alignment explanation
Indices: 72107012--72107101 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 43
72107002 CTTACATCTT
** *
72107012 ATCATATATTGATGCCACTA-TCCTAGACAGGGTCTTACACGAA
1 ATCATATAACGATGCCAATATTCC-AGACAGGGTCTTACACGAA
* * *
72107055 ATCATATAACGATGCCAATATTCCATACATGGTCTTACACGTA
1 ATCATATAACGATGCCAATATTCCAGACAGGGTCTTACACGAA
72107098 ATCA
1 ATCA
72107102 CAATACAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
43 37 0.93
44 3 0.08
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.29
Consensus pattern (43 bp):
ATCATATAACGATGCCAATATTCCAGACAGGGTCTTACACGAA
Found at i:72107116 original size:43 final size:44
Alignment explanation
Indices: 72107030--72107146 Score: 112
Period size: 43 Copynumber: 2.7 Consensus size: 44
72107020 TTGATGCCAC
* * * * * *
72107030 TATCCTAGACAGGGTCTTACACGAAATCA-TATAACGATGCCAA
1 TATCCCAGACATGGTCTTACACGTAATCACAATAACAATACCAA
* *
72107073 TATTCCATACATGGTCTTACACGTAATCACAAT-ACAATACCAA
1 TATCCCAGACATGGTCTTACACGTAATCACAATAACAATACCAA
* * * *
72107116 TGTCCCAGACATAGTCTTATATGTAATCACA
1 TATCCCAGACATGGTCTTACACGTAATCACA
72107147 TCTCGGTAAT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
43 57 0.97
44 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (44 bp):
TATCCCAGACATGGTCTTACACGTAATCACAATAACAATACCAA
Found at i:72112885 original size:66 final size:66
Alignment explanation
Indices: 72112805--72112940 Score: 227
Period size: 66 Copynumber: 2.1 Consensus size: 66
72112795 GACGCTCGTA
* * *
72112805 TGCCTTGGTCGTGGGAAATCTGGAGGGGTTACTGACTTGGGTCACATGGCCGGCCACACGCCTAT
1 TGCCTTGGTCGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACACGCCCAT
72112870 G
66 G
* *
72112871 TGCCTTGGTTGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACATGCCCAT
1 TGCCTTGGTCGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACACGCCCAT
72112936 G
66 G
72112937 TGCC
1 TGCC
72112941 AACCCGTATG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.18, C:0.24, G:0.33, T:0.25
Consensus pattern (66 bp):
TGCCTTGGTCGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACACGCCCAT
G
Found at i:72113790 original size:17 final size:17
Alignment explanation
Indices: 72113768--72113802 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
72113758 ACTATAAAAC
72113768 ATAGAAAAATAACACAA
1 ATAGAAAAATAACACAA
72113785 ATAGAAAAATAACACAA
1 ATAGAAAAATAACACAA
72113802 A
1 A
72113803 GTAAGCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.71, C:0.11, G:0.06, T:0.11
Consensus pattern (17 bp):
ATAGAAAAATAACACAA
Found at i:72114496 original size:43 final size:43
Alignment explanation
Indices: 72114449--72114593 Score: 157
Period size: 43 Copynumber: 3.4 Consensus size: 43
72114439 AGATATAGTT
* * *
72114449 TTACATGTTATCACATATCGATGCCACTGTCCCAGACAGGGTC
1 TTACATGTAATCACATATCGATGCCAATGTCCCAGACATGGTC
* * * * ** *
72114492 TTACACGAAATCATATAACGATGCCAATGTCTAAAACATGGTC
1 TTACATGTAATCACATATCGATGCCAATGTCCCAGACATGGTC
** *
72114535 TTACATGTAATCACA-ATAAAATGCCAATGTCCCAGACATGGTT
1 TTACATGTAATCACATAT-CGATGCCAATGTCCCAGACATGGTC
72114578 TTACATGTAATCACAT
1 TTACATGTAATCACAT
72114594 CTCAGTAATC
Statistics
Matches: 80, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
42 1 0.01
43 79 0.99
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (43 bp):
TTACATGTAATCACATATCGATGCCAATGTCCCAGACATGGTC
Found at i:72116795 original size:17 final size:18
Alignment explanation
Indices: 72116770--72116808 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
72116760 AAAGCTAGTG
*
72116770 AACTTTTTATTTTA-GAA
1 AACTATTTATTTTAGGAA
72116787 AACTATTTATTTTAGGAA
1 AACTATTTATTTTAGGAA
72116805 AACT
1 AACT
72116809 TAAATTTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (18 bp):
AACTATTTATTTTAGGAA
Found at i:72126716 original size:23 final size:23
Alignment explanation
Indices: 72126673--72126716 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
72126663 TTTTTATTCA
*
72126673 TATTAATTTCATTATGCATATTT
1 TATTAATTTCATAATGCATATTT
*
72126696 TATTACTTTCATCAATG-ATAT
1 TATTAATTTCAT-AATGCATAT
72126717 ACCTATACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.52
Consensus pattern (23 bp):
TATTAATTTCATAATGCATATTT
Found at i:72136821 original size:3 final size:3
Alignment explanation
Indices: 72136813--72136879 Score: 125
Period size: 3 Copynumber: 22.3 Consensus size: 3
72136803 TTCATAACCA
72136813 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
72136861 AAA AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG A
72136880 TCGTGTTTCT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:72143702 original size:6 final size:6
Alignment explanation
Indices: 72143683--72143780 Score: 106
Period size: 6 Copynumber: 16.3 Consensus size: 6
72143673 ATATGAAAAC
* * * **
72143683 AAAATA AACATA AAACTA AAAATA AAAATG AACCTA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* * * * *
72143731 AAGAGA AAAATA AAAATA AACATA AAAATA AAAATA AACATA AAGATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
72143779 AA
1 AA
72143781 TGGACTCAAT
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:72143706 original size:18 final size:18
Alignment explanation
Indices: 72143683--72143780 Score: 126
Period size: 18 Copynumber: 5.4 Consensus size: 18
72143673 ATATGAAAAC
*
72143683 AAAATAAACATAAA-ACTA
1 AAAATAAAAATAAACA-TA
* *
72143701 AAAATAAAAATGAACCTA
1 AAAATAAAAATAAACATA
* *
72143719 AAAATAAAAATAAAGAGA
1 AAAATAAAAATAAACATA
72143737 AAAATAAAAATAAACATA
1 AAAATAAAAATAAACATA
72143755 AAAATAAAAATAAACATA
1 AAAATAAAAATAAACATA
*
72143773 AAGATAAA
1 AAAATAAA
72143781 TGGACTCAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.15
Consensus pattern (18 bp):
AAAATAAAAATAAACATA
Found at i:72145358 original size:3 final size:3
Alignment explanation
Indices: 72145350--72145385 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
72145340 AGAACAAGGG
*
72145350 TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
72145386 ATCTAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:72154006 original size:13 final size:13
Alignment explanation
Indices: 72153988--72154019 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
72153978 GCTCAGCAGG
72153988 GACATGCCCGTGT
1 GACATGCCCGTGT
*
72154001 GACATGGCCGTGT
1 GACATGCCCGTGT
72154014 GACATG
1 GACATG
72154020 ATTGCCAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.25, G:0.34, T:0.22
Consensus pattern (13 bp):
GACATGCCCGTGT
Found at i:72156095 original size:27 final size:27
Alignment explanation
Indices: 72156065--72156120 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
72156055 AATAAGTAAA
*
72156065 AACAAAAAATTATACATAAATATTTCT
1 AACAAAAAATTATAAATAAATATTTCT
*
72156092 AACAGAAAATTATAAATAAATATTTCT
1 AACAAAAAATTATAAATAAATATTTCT
72156119 AA
1 AA
72156121 ACATCTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (27 bp):
AACAAAAAATTATAAATAAATATTTCT
Found at i:72163000 original size:16 final size:16
Alignment explanation
Indices: 72162979--72163011 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
72162969 TAATTTCTTA
72162979 CCCCTTTTCTCCGTCT
1 CCCCTTTTCTCCGTCT
*
72162995 CCCCTTTTCTCCTTCT
1 CCCCTTTTCTCCGTCT
72163011 C
1 C
72163012 TAGTGCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.52, G:0.03, T:0.45
Consensus pattern (16 bp):
CCCCTTTTCTCCGTCT
Found at i:72163487 original size:70 final size:70
Alignment explanation
Indices: 72163412--72163552 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
72163402 TATCATCTAT
72163412 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACGGTTTATCACCACTCCACCCCAACC
1 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACGGTTTATCACCACTCCACCCCAACC
72163477 ACAGC
66 ACAGC
*
72163482 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTTCGGTTTATCACCACTCCACCCCAACC
1 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACGGTTTATCACCACTCCACCCCAACC
72163547 ACAGC
66 ACAGC
72163552 A
1 A
72163553 GCCTATATTT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (70 bp):
AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACGGTTTATCACCACTCCACCCCAACC
ACAGC
Found at i:72166275 original size:24 final size:23
Alignment explanation
Indices: 72166244--72166352 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
72166234 CGGATTTGAG
*
72166244 TGGCACTATGTGCGCGTATTGGTA
1 TGGCACTATGTGTGCGTATT-GTA
*
72166268 TGGAACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTA-TTGTA
72166292 TGGCACTATGTGTGCGTATATGTA
1 TGGCACTATGTGTGCGTAT-TGTA
* * *
72166316 TGGCACTACGTGTGCGTAATTATT
1 TGGCACTATGTGTGCGT-ATTGTA
72166340 TGGCACTATGTGT
1 TGGCACTATGTGT
72166353 ACGGAGTTGA
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
23 1 0.01
24 70 0.93
25 4 0.05
ACGTcount: A:0.19, C:0.14, G:0.29, T:0.38
Consensus pattern (23 bp):
TGGCACTATGTGTGCGTATTGTA
Found at i:72167755 original size:27 final size:26
Alignment explanation
Indices: 72167715--72167826 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
72167705 AGCATGGCTG
* * *
72167715 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAAATAATGTGGCAGAGCCA
72167741 CCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAAATAAT-GTGGCAGAGCCA
72167769 CCAGAACAGAA-ATATGTGGCAGAGCCA
1 CCAGAACA-AATA-ATGTGGCAGAGCCA
* * *
72167796 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAAATAA-TGTGGCAGAGCCA
72167823 CCAG
1 CCAG
72167827 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 7 0.09
27 48 0.65
28 19 0.26
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAAATAATGTGGCAGAGCCA
Found at i:72167815 original size:54 final size:54
Alignment explanation
Indices: 72167715--72167826 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
72167705 AGCATGGCTG
* *
72167715 CCAGAACAGATAATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
* * * *
72167769 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
72167823 CCAG
1 CCAG
72167827 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
Found at i:72175582 original size:28 final size:28
Alignment explanation
Indices: 72175527--72175638 Score: 108
Period size: 27 Copynumber: 4.1 Consensus size: 28
72175517 AGCATGGCTG
* *
72175527 CCAGA-ACAGATAA-TGTGACAGAGTCA
1 CCAGATACAGATAATTGTGGCAGAGCCA
*
72175553 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAATTGTGGCAGAGCCA
* *
72175581 CCA-AAACAGA-AATATGTGGCACAGCCA
1 CCAGATACAGATAAT-TGTGGCAGAGCCA
* * *
72175608 CCAAAT-CAGATAATTGTGGCATAGGCA
1 CCAGATACAGATAATTGTGGCAGAGCCA
72175635 CCAG
1 CCAG
72175639 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
26 8 0.11
27 46 0.65
28 17 0.24
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (28 bp):
CCAGATACAGATAATTGTGGCAGAGCCA
Found at i:72177662 original size:29 final size:27
Alignment explanation
Indices: 72177643--72177705 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
72177633 ATATTAAGTC
72177643 CGCACACTCAATGCTATATAATCAACT
1 CGCACACTCAATGCTATATAATCAACT
* *
72177670 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAATGCTATATAATC-AACT
72177698 CGCACACT
1 CGCACACT
72177706 TAGTGCTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
27 21 0.64
28 12 0.36
ACGTcount: A:0.35, C:0.30, G:0.10, T:0.25
Consensus pattern (27 bp):
CGCACACTCAATGCTATATAATCAACT
Found at i:72177706 original size:28 final size:28
Alignment explanation
Indices: 72177643--72177740 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
72177633 ATATTAAGTC
* *
72177643 CGCACACTCAATGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72177670 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72177698 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72177727 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72177741 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 21 0.33
28 23 0.37
29 19 0.30
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72185718 original size:28 final size:28
Alignment explanation
Indices: 72185655--72185777 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
72185645 ATATTAAGTC
*
72185655 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72185682 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72185710 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72185738 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72185767 CGCACACTTAG
1 CGCACACTTAG
72185778 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72189986 original size:37 final size:37
Alignment explanation
Indices: 72189945--72190022 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
72189935 AGTGTATGGA
72189945 TAAAAATACATACATTTGTAATACATGTATTAGATAT
1 TAAAAATACATACATTTGTAATACATGTATTAGATAT
*
72189982 TAAAAATCCATACATTTGTAATACATGTATTAGATAT
1 TAAAAATACATACATTTGTAATACATGTATTAGATAT
72190019 TAAA
1 TAAA
72190023 TAGATATTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.46, C:0.09, G:0.08, T:0.37
Consensus pattern (37 bp):
TAAAAATACATACATTTGTAATACATGTATTAGATAT
Found at i:72192200 original size:46 final size:46
Alignment explanation
Indices: 72192147--72192474 Score: 462
Period size: 46 Copynumber: 7.0 Consensus size: 46
72192137 AGTGTGCTCT
72192147 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
72192193 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
72192239 CTGATATGAAATGTGTAAGACAATGGTTGAAAG-TACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
72192284 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
72192330 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
72192376 CATGGCAGCGTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 C-T-G-A---T---ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
72192431 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
72192475 TCATGTCAAA
Statistics
Matches: 259, Mismatches: 12, Indels: 22
0.88 0.04 0.08
Matches are distributed among these distances:
45 45 0.17
46 168 0.65
47 1 0.00
48 1 0.00
49 1 0.00
52 2 0.01
53 1 0.00
54 1 0.00
55 39 0.15
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:72192304 original size:91 final size:92
Alignment explanation
Indices: 72192147--72192474 Score: 462
Period size: 91 Copynumber: 3.5 Consensus size: 92
72192137 AGTGTGCTCT
*
72192147 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
72192212 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
*
72192239 CTGATATGAAATGTGTAAGACAATGGTTGAAAG-TACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
72192303 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
72192330 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATGGCAGCGTAACATGAA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-T-G-A---T---ATGAA
**
72192395 ATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
57 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
72192431 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
72192475 TCATGTCAAA
Statistics
Matches: 214, Mismatches: 11, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
91 89 0.42
92 45 0.21
93 1 0.00
94 1 0.00
95 1 0.00
98 1 0.00
100 1 0.00
101 75 0.35
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (92 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
ACCATGGTTGAAAGATACCATGGCAAC
Found at i:72192449 original size:101 final size:101
Alignment explanation
Indices: 72192289--72192474 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 101
72192279 GCAACCTGAT
** * * *
72192289 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
* *
72192354 GGTTGAAAGATACCATGGCAACCATGGCAGCGTAAC
66 AGTTGAAAGACACCATGGCAACCATGGCAGCGTAAC
72192390 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCA
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCA
*
72192454 TAGTTGAAAGACACTATGGCA
65 TAGTTGAAAGACACCATGGCA
72192475 TCATGTCAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
100 1 0.01
101 75 0.99
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (101 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
AGTTGAAAGACACCATGGCAACCATGGCAGCGTAAC
Found at i:72195956 original size:43 final size:43
Alignment explanation
Indices: 72195904--72196029 Score: 173
Period size: 44 Copynumber: 2.9 Consensus size: 43
72195894 ATAAGATTCG
72195904 GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
1 GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
* * *
72195947 GATTTGTGATTTACGTGTAAGACCCTGTCTGGGACAG-TGGCATC
1 GATATGTGATTT-CATGTAAGACCATGTCTGGGAC-GTTGGCATC
* * *
72195991 GATATGTGATTACATGTAAGACCATGCCTAGGACGTTGG
1 GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGG
72196030 TGTTGTACAA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.01
43 32 0.45
44 37 0.52
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:72195976 original size:44 final size:44
Alignment explanation
Indices: 72195904--72196029 Score: 177
Period size: 43 Copynumber: 2.9 Consensus size: 44
72195894 ATAAGATTCG
72195904 GATATGTGATTT-CATGTAAGACCATGTCTGGGACGTTGGCATC
1 GATATGTGATTTACATGTAAGACCATGTCTGGGACGTTGGCATC
* * *
72195947 GATTTGTGATTTACGTGTAAGACCCTGTCTGGGACAG-TGGCATC
1 GATATGTGATTTACATGTAAGACCATGTCTGGGAC-GTTGGCATC
* *
72195991 GATATGTGA-TTACATGTAAGACCATGCCTAGGACGTTGG
1 GATATGTGATTTACATGTAAGACCATGTCTGGGACGTTGG
72196030 TGTTGTACAA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.01
43 35 0.49
44 35 0.49
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (44 bp):
GATATGTGATTTACATGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:72199826 original size:46 final size:46
Alignment explanation
Indices: 72199773--72199864 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
72199763 TTGAAATCCT
*
72199773 AGTTGCAAGAATTAACAGATAGAGGTTTCGCACGACCGAGTTTTTC
1 AGTTGCAAGAATTAACAGATAGAGGTTTCGCACGACCGAGCTTTTC
*
72199819 AGTTGCAAGAATTAACAGATAGAGGTTTCGTACGACCGAGCTTTTC
1 AGTTGCAAGAATTAACAGATAGAGGTTTCGCACGACCGAGCTTTTC
72199865 TCACTGGGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (46 bp):
AGTTGCAAGAATTAACAGATAGAGGTTTCGCACGACCGAGCTTTTC
Found at i:72202482 original size:26 final size:28
Alignment explanation
Indices: 72202420--72202476 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
72202410 AGCTACGTGG
72202420 AAGCCCAAAGATGCTATGAGAGAATGTT
1 AAGCCCAAAGATGCTATGAGAGAATGTT
72202448 AAGCCCAAAGATGCTATGAGAGAATGTT
1 AAGCCCAAAGATGCTATGAGAGAATGTT
72202476 A
1 A
72202477 CCCAAACCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (28 bp):
AAGCCCAAAGATGCTATGAGAGAATGTT
Found at i:72203897 original size:43 final size:43
Alignment explanation
Indices: 72203778--72203904 Score: 148
Period size: 43 Copynumber: 2.9 Consensus size: 43
72203768 ACAAGATTCT
* * * *
72203778 GATATGTGATTTCGTGTAAGATCACATCTGGGACGTTGGCATC
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
* * **
72203821 GATTTTTGATTTACATGTAAGACCTTGTCTGGGACAG-TGGCATC
1 GATATGTGA-TTACATGTAAGACCACGTCTGGGAC-GTTGGCATC
*
72203865 GATATGTGATTACATGTAAGACCACGTTTGGGACGTTGGC
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
72203905 GTTGTACGAG
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 1 0.01
43 33 0.49
44 33 0.49
45 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:72214796 original size:25 final size:27
Alignment explanation
Indices: 72214759--72214811 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
72214749 TCAAACATGC
72214759 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
72214785 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
72214811 A
1 A
72214812 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:72216330 original size:32 final size:32
Alignment explanation
Indices: 72216293--72216357 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
72216283 AATGCTTACC
72216293 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
72216325 ATGCCCATCATCCATTAACTTTTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
72216357 A
1 A
72216358 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:72219058 original size:39 final size:39
Alignment explanation
Indices: 72219015--72219162 Score: 161
Period size: 39 Copynumber: 3.8 Consensus size: 39
72219005 TATAGTCATC
* * **
72219015 TAACATACCAGCATATATCACAATACTCAAATAATCATG
1 TAACATTCAAGCATATATCACAATACTCAAATAATCACA
* * ** * *
72219054 TAACATTTAAGTATATATCACAATACTCGTATACTCGCA
1 TAACATTCAAGCATATATCACAATACTCAAATAATCACA
* * **
72219093 TAACATTTAAGCATATATCATAATACTCGTATAATCACA
1 TAACATTCAAGCATATATCACAATACTCAAATAATCACA
*
72219132 TAACATTCAAGCATATATCCCAATACTCAAA
1 TAACATTCAAGCATATATCACAATACTCAAA
72219163 AACATCTTTC
Statistics
Matches: 90, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.30
Consensus pattern (39 bp):
TAACATTCAAGCATATATCACAATACTCAAATAATCACA
Found at i:72220761 original size:6 final size:6
Alignment explanation
Indices: 72220750--72220779 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
72220740 TAGCCCATTG
72220750 CAGTAT CAGTAT CAGTAT CAGTAT CAGTAT
1 CAGTAT CAGTAT CAGTAT CAGTAT CAGTAT
72220780 GGGCCTTAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (6 bp):
CAGTAT
Found at i:72221113 original size:27 final size:27
Alignment explanation
Indices: 72221075--72221151 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
72221065 GTCATACATA
* *
72221075 TCATAAGGGTATATCAGTCATTTTACC
1 TCATAGGGGTATAACAGTCATTTTACC
*
72221102 TCATAGGGGTATAACAGTCACTTTACC
1 TCATAGGGGTATAACAGTCATTTTACC
* * *
72221129 TTATAGGAGTATAGCAGTCATTT
1 TCATAGGGGTATAACAGTCATTT
72221152 CATCAAATTG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (27 bp):
TCATAGGGGTATAACAGTCATTTTACC
Found at i:72222561 original size:41 final size:41
Alignment explanation
Indices: 72222504--72222585 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
72222494 CCCCAAAACC
72222504 GAATGCATGAGTGCCTACAAACCCACTTCGACACCAACACT
1 GAATGCATGAGTGCCTACAAACCCACTTCGACACCAACACT
72222545 GAATGCATGAGTGCCTACAAACCCACTTCGACACCAACACT
1 GAATGCATGAGTGCCTACAAACCCACTTCGACACCAACACT
72222586 CCCTCAACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.34, G:0.15, T:0.17
Consensus pattern (41 bp):
GAATGCATGAGTGCCTACAAACCCACTTCGACACCAACACT
Found at i:72227832 original size:29 final size:27
Alignment explanation
Indices: 72227800--72227855 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
72227790 GGGTAAAACT
72227800 GTAAATTATCCACTTTTAAAGGTATTTCA
1 GTAAATTATCCA-TTTT-AAGGTATTTCA
* * *
72227829 GTAATTTATCTATTTTAAGGTTTTTCA
1 GTAAATTATCCATTTTAAGGTATTTCA
72227856 TGCATATTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.42
28 4 0.17
29 10 0.42
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (27 bp):
GTAAATTATCCATTTTAAGGTATTTCA
Found at i:72229305 original size:26 final size:26
Alignment explanation
Indices: 72229275--72229356 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
72229265 TGAAATTCCC
72229275 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72229301 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72229327 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72229353 ATCA
1 ATCA
72229357 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72234830 original size:26 final size:26
Alignment explanation
Indices: 72234801--72234853 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
72234791 TCAAACATGC
72234801 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
72234827 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
72234853 A
1 A
72234854 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:72234891 original size:29 final size:27
Alignment explanation
Indices: 72234859--72234914 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
72234849 GGGTAAAACT
72234859 GTAAATTATCCACTTTTAAAGGTATTTCA
1 GTAAATTATCCA-TTTT-AAGGTATTTCA
* * *
72234888 GTAATTTATCTATTTTAAGGTTTTTCA
1 GTAAATTATCCATTTTAAGGTATTTCA
72234915 TGCATATTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.42
28 4 0.17
29 10 0.42
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (27 bp):
GTAAATTATCCATTTTAAGGTATTTCA
Found at i:72236368 original size:26 final size:26
Alignment explanation
Indices: 72236338--72236419 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
72236328 TGAAATTCCC
72236338 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
**
72236364 ATCATTAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72236390 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72236416 ATCA
1 ATCA
72236420 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72237079 original size:25 final size:26
Alignment explanation
Indices: 72237035--72237104 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
72237025 TTTCTCATCC
* * * *
72237035 CAATTTTATCCTAG-TAAAATTTTGG
1 CAATTTTACCCTCGATAAATTTTTGA
72237060 CAATTTTACCCTCGATAAATTTTTGA
1 CAATTTTACCCTCGATAAATTTTTGA
*
72237086 CGATTTTACCCTCGATAAA
1 CAATTTTACCCTCGATAAA
72237105 ATTTCGAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 12 0.31
26 27 0.69
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (26 bp):
CAATTTTACCCTCGATAAATTTTTGA
Found at i:72242437 original size:46 final size:45
Alignment explanation
Indices: 72242370--72242490 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 45
72242360 TACGTGTGTC
* *
72242370 AGTGTAAGACATGTTTGGGACATGCATCGACCACATT-G-TGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCG---ACATTAGACGAGAGCT
*
72242416 AGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATT-AGACGAGAGCT
* *
72242462 AATGTAAGACATGTCTGAGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
72242491 GCCTCGAGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
43 4 0.06
45 1 0.01
46 62 0.93
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTAGACGAGAGCT
Found at i:72247000 original size:40 final size:40
Alignment explanation
Indices: 72246945--72247096 Score: 200
Period size: 40 Copynumber: 3.8 Consensus size: 40
72246935 CGGATGATAA
* * *
72246945 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
72246985 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* * *
72247025 CCGGGCTAAGTCCCGAAGGTAATTGTGCGAGTTACTACAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
*
72247066 -CGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
72247097 AGCTATATCC
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 95 0.97
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:72247103 original size:80 final size:80
Alignment explanation
Indices: 72246941--72247096 Score: 233
Period size: 80 Copynumber: 1.9 Consensus size: 80
72246931 TATTCGGATG
* * *
72246941 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTAATTCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAATGACTAAATCCGGGCTAAGTCCCGAAGGCA
*
72247006 TTTGTGCGAGTTACT
66 TTTGAGCGAGTTACT
* * *
72247021 ATAACCGGGCTAAGTCCCGAAGGTAATTGTGCGAGTTACTACAAT-CGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAATGACTA-AATCCGGGCTAAGTCCCGAAGGC
72247085 ATTTGAGCGAGT
65 ATTTGAGCGAGT
72247097 AGCTATATCC
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 66 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAATGACTAAATCCGGGCTAAGTCCCGAAGGCA
TTTGAGCGAGTTACT
Found at i:72255162 original size:40 final size:40
Alignment explanation
Indices: 72254968--72255163 Score: 250
Period size: 40 Copynumber: 4.9 Consensus size: 40
72254958 TATTCGGATG
* * * * * *
72254968 ATAACCGAGCTAAGTCCTGAAGGCATTTGTGCTAATGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
** * *
72255008 A-ATTTCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
*
72255048 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
* *
72255088 ATAACCGGGATAAGTCCCGAAGGCAATTGAGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
*
72255128 ACAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
72255164 AGCTATATCT
Statistics
Matches: 137, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
Found at i:72259442 original size:68 final size:67
Alignment explanation
Indices: 72259370--72259519 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
72259360 CATCATGTGT
* * * *
72259370 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
72259432 ATGTAG
62 ATGTAG
** * *
72259438 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
72259503 AG
66 AG
72259505 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
72259520 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:72259475 original size:64 final size:64
Alignment explanation
Indices: 72259394--72259577 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
72259384 AGACATTATG
* *
72259394 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
72259458 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
72259523 AA
63 AA
* * * * *
72259525 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCGCCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
72259578 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72265174 original size:48 final size:47
Alignment explanation
Indices: 72265069--72265379 Score: 265
Period size: 48 Copynumber: 6.6 Consensus size: 47
72265059 TACGTGTGCC
* * * *
72265069 AGTGTAAGACATGTCTAGGACAGGCATTGGCC---ACAT-TACAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAC-AA-CT
* * *
72265114 AGTTTAAAACATGTCTGGGACATGCATCGGCCTTGAGATATACCAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATA-CAACT
* * * * * ** * *
72265162 AATGTAAAACATGTCTAGGATATGCATCGGCATTGAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAACT
* * *
72265208 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATACCAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATA-CAACT
* * * ** * *
72265256 AGTGTAAGACATGTCTGGGACATGCATCGACATTAAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAACT
*
72265302 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA-CT
* *
72265350 AGTGTAAGACCTGTCTAGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
72265380 ACACCGATAG
Statistics
Matches: 207, Mismatches: 49, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
45 27 0.13
46 69 0.33
47 5 0.02
48 95 0.46
49 10 0.05
50 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAACT
Found at i:72265231 original size:94 final size:94
Alignment explanation
Indices: 72265067--72265519 Score: 424
Period size: 94 Copynumber: 4.8 Consensus size: 94
72265057 GATACGTGTG
* * * * *
72265067 CCAGTGTAAGACATGTCTAGGACAGGCATTGGCCACATT---AC-AAAGCTAGTTTAAAACATGT
1 CCAGTGTAAGACATGTCTAGGACATGCA-T--CGACATTGAGACGAGAGCTAGTGTAAGACATGT
*
72265128 CTGGGACATGCATCGGCCTTGAGATATACCAA
63 CTGGGACATGCATCGGCCTCGAGATATACCAA
* * * *
72265160 CCAATGTAAAACATGTCTAGGATATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTG
1 CCAGTGTAAGACATGTCTAGGACATGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTCTG
*
72265225 GGACATGCATCGGCCTCGAAATATACCAA
66 GGACATGCATCGGCCTCGAGATATACCAA
* *
72265254 CCAGTGTAAGACATGTCTGGGACATGCATCGACATTAAGACGAGAGCTAGTGTAAGACATGTCTG
1 CCAGTGTAAGACATGTCTAGGACATGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTCTG
72265319 GGACATGCATCGGCCTCGAGATATA-CAA
66 GGACATGCATCGGCCTCGAGATATACCAA
* * ** * *
72265347 GCTAGTGTAAGACCTGTCTAGGACATGGCATCGACACCGATAGATGAGAGAC-AGTGTAAGACCT
1 -CCAGTGTAAGACATGTCTAGGACAT-GCATCGACATTG--AGACGAGAG-CTAGTGTAAGACAT
* ** *
72265411 GTCTGGGACACGGCATCAACCTCGATATATGA--AA
61 GTCTGGGACA-TGCATCGGCCTCGAGATAT-ACCAA
* * * * *
72265445 GTCAGTGTAAGACCTGTCT-GGCACATGGCATCGACTTTGATGTAC--TAGCCAGTGTAAGACCA
1 -CCAGTGTAAGACATGTCTAGG-ACAT-GCATCGACATTGA-G-ACGAGAGCTAGTGTAAGA-CA
*
72265507 TGTTTGGGACATG
60 TGTCTGGGACATG
72265520 GCGTCAGCAT
Statistics
Matches: 304, Mismatches: 40, Indels: 29
0.82 0.11 0.08
Matches are distributed among these distances:
90 5 0.02
92 1 0.00
93 29 0.10
94 152 0.50
95 10 0.03
96 13 0.04
97 43 0.14
98 50 0.16
99 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (94 bp):
CCAGTGTAAGACATGTCTAGGACATGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTCTG
GGACATGCATCGGCCTCGAGATATACCAA
Found at i:72265406 original size:49 final size:48
Alignment explanation
Indices: 72265208--72265479 Score: 188
Period size: 49 Copynumber: 5.6 Consensus size: 48
72265198 GACGAGAGCT
* * * * *
72265208 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAAATAT-ACCAA-CC
1 AGTGTAAGACCTGTCT-GGACATGGCATCGACCTCGATAGATGA--AAGAC
* * * * *
72265256 AGTGTAAGACATGTCTGGGACAT-GCATCGACAT-TA-AGACGAGAG-C
1 AGTGTAAGACCTGTCT-GGACATGGCATCGACCTCGATAGATGAAAGAC
* * * *
72265301 TAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAG-C
1 -AGTGTAAGACCTGTCT-GGACATGGCATCGACCTCGATAGATGA-AAGAC
*
72265349 TAGTGTAAGACCTGTCTAGGACATGGCATCGACAC-CGATAGATGAGAGAC
1 -AGTGTAAGACCTGTCT-GGACATGGCATCGAC-CTCGATAGATGAAAGAC
* * * *
72265399 AGTGTAAGACCTGTCTGGGACACGGCATCAACCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCT-GGACATGGCATCGACCTCGATAGATGAAAGAC
72265448 AGTGTAAGACCTGTCTGGCACATGGCATCGAC
1 AGTGTAAGACCTGTCTGG-ACATGGCATCGAC
72265480 TTTGATGTAC
Statistics
Matches: 186, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 33 0.18
47 4 0.02
48 61 0.33
49 83 0.45
50 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGACATGGCATCGACCTCGATAGATGAAAGAC
Found at i:72270497 original size:20 final size:20
Alignment explanation
Indices: 72270474--72270512 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72270464 AAGTATAAAC
*
72270474 AGAGGCAATAAAGTGCAAAA
1 AGAGGCAACAAAGTGCAAAA
*
72270494 AGAGGCACCAAAGTGCAAA
1 AGAGGCAACAAAGTGCAAA
72270513 TCCCGTACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.15, G:0.26, T:0.08
Consensus pattern (20 bp):
AGAGGCAACAAAGTGCAAAA
Found at i:72288603 original size:26 final size:26
Alignment explanation
Indices: 72288574--72288681 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
72288564 TGGTACAAAT
72288574 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
72288600 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72288626 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
72288652 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72288678 TGAT
1 TGAT
72288682 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:72290202 original size:26 final size:26
Alignment explanation
Indices: 72290173--72290222 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
72290163 ACAGTTTTAA
72290173 CCCTAGTAGATAAATT-ACCTAAATAC
1 CCCTAG-AGATAAATTGACCTAAATAC
* *
72290199 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGAGATAAATTGACCTAAAT
72290223 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (26 bp):
CCCTAGAGATAAATTGACCTAAATAC
Done.