Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 229 of 325
Found at i:72290299 original size:25 final size:22
Alignment explanation
Indices: 72290234--72290287 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
72290224 CATGTTTGAC
72290234 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTACTGCATGCCA
72290256 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTACTGCATGCCA
72290278 TGTTGTTATT
1 TGTTGTTATT
72290288 ATCTGATGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.17, C:0.15, G:0.19, T:0.50
Consensus pattern (22 bp):
TGTTGTTATTTACTGCATGCCA
Found at i:72291517 original size:65 final size:65
Alignment explanation
Indices: 72291426--72291565 Score: 219
Period size: 65 Copynumber: 2.2 Consensus size: 65
72291416 ACTACCGCAA
* * *
72291426 CTCTTTGTGAACGTCCTGTTATATGATCGGTTGTGATCCTGCATATATTGCGAACACAAATGCAG
1 CTCTTTGTGAACGTCCTGTTATATGATCGATAGTGATCCTACATATATTGCGAACACAAATGCAG
* *
72291491 CTCTTTGT-AAGCGTCTTGTTTTATGATCGATAGTGATCCTACATATATTGCGAACACAAATGCA
1 CTCTTTGTGAA-CGTCCTGTTATATGATCGATAGTGATCCTACATATATTGCGAACACAAATGCA
72291555 G
65 G
72291556 CTCTTTGTGA
1 CTCTTTGTGA
72291566 GTGTCCTGAT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
64 2 0.03
65 65 0.96
66 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (65 bp):
CTCTTTGTGAACGTCCTGTTATATGATCGATAGTGATCCTACATATATTGCGAACACAAATGCAG
Found at i:72291630 original size:24 final size:26
Alignment explanation
Indices: 72291590--72291671 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
72291580 ATCGCTTGAA
*
72291590 CTTCCTGA-TATATGGCTATTCG-GAG
1 CTTCCTGATTA-AAGGCTATTCGTGAG
*
72291615 C-TCCTGATTAAAGGCTCTTCGTGAG
1 CTTCCTGATTAAAGGCTATTCGTGAG
* * * *
72291640 CTTCCTGATTAAAAGTTATTTGTGAA
1 CTTCCTGATTAAAGGCTATTCGTGAG
72291666 CTTCCT
1 CTTCCT
72291672 AAATATGGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
24 15 0.32
25 7 0.15
26 25 0.53
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (26 bp):
CTTCCTGATTAAAGGCTATTCGTGAG
Found at i:72291649 original size:26 final size:25
Alignment explanation
Indices: 72291590--72291652 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 25
72291580 ATCGCTTGAA
*
72291590 CTTCCTGA-TATATGGCTATTCGGAG
1 CTTCCTGATTA-AAGGCTATTCGGAG
*
72291615 C-TCCTGATTAAAGGCTCTTCGTGAG
1 CTTCCTGATTAAAGGCTATTCG-GAG
72291640 CTTCCTGATTAAA
1 CTTCCTGATTAAA
72291653 AGTTATTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 15 0.45
25 7 0.21
26 11 0.33
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (25 bp):
CTTCCTGATTAAAGGCTATTCGGAG
Found at i:72301005 original size:43 final size:41
Alignment explanation
Indices: 72300958--72301053 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 41
72300948 AAGATTATGA
*
72300958 CTTTTAGCGGTATT-TGTGGGAAAAACGCGTCTAAAAGTCATGG
1 CTTTTAGCGGT-TTATGAGGGAAAAAC-CG-CTAAAAGTCATGG
***
72301001 CTTTTAGCGGCGTTTATGAGGGAGGCACCGCTAAAAGTCATGG
1 CTTTTAGC-G-GTTTATGAGGGAAAAACCGCTAAAAGTCATGG
72301044 CTTTTAGCGG
1 CTTTTAGCGG
72301054 CGCTTTTCTT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
41 1 0.02
42 1 0.02
43 29 0.63
44 5 0.11
45 10 0.22
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (41 bp):
CTTTTAGCGGTTTATGAGGGAAAAACCGCTAAAAGTCATGG
Found at i:72301177 original size:31 final size:31
Alignment explanation
Indices: 72301127--72301192 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
72301117 AACCCTTCTT
* * *
72301127 GCATTAAATCCAACTAAAAACAGCAAATATA
1 GCATGAAATCCAACCAAAAACAACAAATATA
* *
72301158 GCATGAAATCGAACCAAAAACAACAAATGTA
1 GCATGAAATCCAACCAAAAACAACAAATATA
72301189 GCAT
1 GCAT
72301193 AAAAAATACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.53, C:0.20, G:0.11, T:0.17
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAACAAATATA
Found at i:72301929 original size:13 final size:14
Alignment explanation
Indices: 72301903--72301931 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
72301893 ACTAAAGAAG
72301903 AATTAAACCATTAT
1 AATTAAACCATTAT
72301917 AATTAAA-CATTAT
1 AATTAAACCATTAT
72301930 AA
1 AA
72301932 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:72304662 original size:15 final size:15
Alignment explanation
Indices: 72304639--72304670 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
72304629 AAATAATAAT
72304639 TTATATATATTTATC
1 TTATATATATTTATC
*
72304654 TTATTTATATTTATC
1 TTATATATATTTATC
72304669 TT
1 TT
72304671 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:72304703 original size:7 final size:7
Alignment explanation
Indices: 72304693--72304764 Score: 72
Period size: 7 Copynumber: 10.3 Consensus size: 7
72304683 CCAAAATTAT
72304693 ACCCTAA
1 ACCCTAA
*
72304700 ACCCGAA
1 ACCCTAA
*
72304707 ACCTTAA
1 ACCCTAA
*
72304714 ACCTTAA
1 ACCCTAA
* *
72304721 ACTCAAA
1 ACCCTAA
* *
72304728 ATCCTAC
1 ACCCTAA
*
72304735 ACCTTAA
1 ACCCTAA
72304742 ACCCTAA
1 ACCCTAA
72304749 ACCCTAA
1 ACCCTAA
72304756 ACCCTAA
1 ACCCTAA
72304763 AC
1 AC
72304765 TCACTACACC
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 51 1.00
ACGTcount: A:0.43, C:0.38, G:0.01, T:0.18
Consensus pattern (7 bp):
ACCCTAA
Found at i:72304861 original size:39 final size:39
Alignment explanation
Indices: 72304815--72304889 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
72304805 CGTTTGAATG
72304815 AAAAACGCCACTAAAGAAT-GAGTATTAGCAGCACTTCTC
1 AAAAACGCCACTAAAG-ATGGAGTATTAGCAGCACTTCTC
** *
72304854 AAAAACGCTGCTAAAGATGGAGTATTAGCTGCACTT
1 AAAAACGCCACTAAAGATGGAGTATTAGCAGCACTT
72304890 TTTTAAGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.06
39 30 0.94
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.23
Consensus pattern (39 bp):
AAAAACGCCACTAAAGATGGAGTATTAGCAGCACTTCTC
Found at i:72305123 original size:115 final size:115
Alignment explanation
Indices: 72304975--72305216 Score: 385
Period size: 115 Copynumber: 2.1 Consensus size: 115
72304965 GCGTTTTTCA
* *
72304975 AAAAACGCCGCAAAAGAATTTTGCAAAATGACGTTGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
1 AAAAACGCCGCAAAAGAATTTTGCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
* * *
72305040 CGCGCTTTTCAAAAATGCCGCTAAAGATCAAGTACTAGCGGCGCTTTTTT
66 AGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGCACTTTTTT
*
72305090 AAAAACGCCGCAAAAGAATTTTTCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
1 AAAAACGCCGCAAAAGAATTTTGCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
* * *
72305155 AGCGCTTTTCAAAAACGCCGCTAAAGATCGAGTATTAGCGGCATTTTTTT
66 AGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGCACTTTTTT
*
72305205 AAGAAATGCCGC
1 AA-AAACGCCGC
72305217 TATAAGTATA
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
115 108 0.93
116 8 0.07
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (115 bp):
AAAAACGCCGCAAAAGAATTTTGCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
AGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGCACTTTTTT
Found at i:72305563 original size:21 final size:21
Alignment explanation
Indices: 72305538--72305597 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
72305528 GTTTAAAGGT
*
72305538 GGTTTAAGGGTTGGGGTTTAA
1 GGTTTAAGGGTTAGGGTTTAA
*
72305559 GGTTTAAGTGTTAGGGTTTAA
1 GGTTTAAGGGTTAGGGTTTAA
* *
72305580 GGGTTATGGGTTAAGGGT
1 GGTTTAAGGGTT-AGGGT
72305598 GAGGGGTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
21 28 0.85
22 5 0.15
ACGTcount: A:0.20, C:0.00, G:0.42, T:0.38
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGTTTAA
Found at i:72305775 original size:7 final size:7
Alignment explanation
Indices: 72305763--72305788 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
72305753 TATCATTATA
72305763 GTTTAGG
1 GTTTAGG
72305770 GTTTAGG
1 GTTTAGG
72305777 GTTTAGG
1 GTTTAGG
72305784 GTTTA
1 GTTTA
72305789 AAGTGTATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:72305830 original size:15 final size:15
Alignment explanation
Indices: 72305812--72305854 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
72305802 ATTATTTTAA
72305812 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
72305827 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
72305841 GATTTATGG-TTATG
1 GGTTTATGGATTATG
72305855 TAAGAGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 13 0.54
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.47
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:72305832 original size:22 final size:22
Alignment explanation
Indices: 72305807--72305849 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
72305797 GAGTTATTAT
*
72305807 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGATTAT-GATTTATGGG
*
72305829 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGATTTATGG
72305850 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGATTTATGGG
Found at i:72306139 original size:15 final size:16
Alignment explanation
Indices: 72306121--72306160 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
72306111 TTTAAAATTT
72306121 AAAAATTAAAAA-ATA
1 AAAAATTAAAAACATA
*
72306136 AAAAATAAAAAACATA
1 AAAAATTAAAAACATA
*
72306152 AAAATTTAA
1 AAAAATTAA
72306161 TATTTAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (16 bp):
AAAAATTAAAAACATA
Found at i:72306344 original size:41 final size:41
Alignment explanation
Indices: 72306279--72306364 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
72306269 AAAAAAAATC
* *
72306279 AAAATTGAGCAATAATGGCGTTTTTGA-GCAAAACGCCACAA
1 AAAATTGAACAATAATGGCGTTTTT-ATGAAAAACGCCACAA
* * * *
72306320 AAAATTGAACTATAGTGGCTTTTTTATTAAAAACGCCACAA
1 AAAATTGAACAATAATGGCGTTTTTATGAAAAACGCCACAA
72306361 AAAA
1 AAAA
72306365 CTATTATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 1 0.03
41 37 0.97
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (41 bp):
AAAATTGAACAATAATGGCGTTTTTATGAAAAACGCCACAA
Found at i:72308442 original size:48 final size:48
Alignment explanation
Indices: 72308390--72308613 Score: 265
Period size: 48 Copynumber: 4.7 Consensus size: 48
72308380 GTCGAGGTCA
* * *
72308390 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTTTCAATACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
* * * * * * *
72308438 ATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
* * * *
72308486 ATGCCATGTCCCGGACATGGTTTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
*
72308534 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--AT-AATGTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAA--T-GCCG
72308582 ATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
72308614 ACACATATTA
Statistics
Matches: 149, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 1 0.01
48 145 0.97
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
Found at i:72308522 original size:96 final size:95
Alignment explanation
Indices: 72308340--72308613 Score: 361
Period size: 96 Copynumber: 2.9 Consensus size: 95
72308330 GGGTAAATTG
* * * * *
72308340 CCGATACCATATCCAGATATGGTCTTACACTGGCTCACATGTCGAGGTCAATGCCATGTCCCAAA
1 CCGATGCCATGTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAGA
*
72308405 CATGGTCTTACACTAGCTCTCGTTTCAATA
66 CATGGTCTTACACTAGCTCTCGTCTCAATA
* * * *
72308435 CCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCAAGGCCGATGCCATGTCCCGG
1 CCGATGCCATGTCC-AGACATGGTCTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAG
* *
72308500 ACATGGTTTTACACTAGCTCTCGTCTCAATG
65 ACATGGTCTTACACTAGCTCTCGTCTCAATA
* * * * *
72308531 CCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGTCGATGCCATGTCCCA
1 CCGATGCCATGT-CCAGACATGGTCTTACACTGGCTCACAT-GTCGAGGTCGATGCCATGTCCCA
72308595 GACATGGTCTTACACTAGC
64 GACATGGTCTTACACTAGC
72308614 ACACATATTA
Statistics
Matches: 154, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
95 12 0.08
96 139 0.90
97 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (95 bp):
CCGATGCCATGTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCGTCTCAATA
Found at i:72313584 original size:93 final size:93
Alignment explanation
Indices: 72313472--72313643 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72313462 CGCCCATAAG
* *
72313472 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72313537 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
72313565 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72313630 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72313644 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72313640 original size:46 final size:46
Alignment explanation
Indices: 72313465--72313640 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
72313455 TGTAACCCGC
* * *
72313465 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72313511 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72313561 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72313604 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72313641 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72321151 original size:93 final size:93
Alignment explanation
Indices: 72321039--72321210 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72321029 CGCCCATAAG
* *
72321039 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72321104 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
72321132 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72321197 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72321211 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72321207 original size:46 final size:46
Alignment explanation
Indices: 72321032--72321207 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
72321022 TGTAACCCGC
* * *
72321032 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72321078 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72321128 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72321171 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72321208 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72323721 original size:7 final size:7
Alignment explanation
Indices: 72323709--72323736 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
72323699 GGCATAGCCT
72323709 TTTCATA
1 TTTCATA
72323716 TTTCATA
1 TTTCATA
72323723 TTTCATA
1 TTTCATA
72323730 TTTCATA
1 TTTCATA
72323737 ACATGGGCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:72324068 original size:23 final size:22
Alignment explanation
Indices: 72324018--72324120 Score: 106
Period size: 22 Copynumber: 4.7 Consensus size: 22
72324008 GCCTTTTTAT
72324018 TAACTGGGCAT-AGCCC-TTGA
1 TAACTGGGCATAAGCCCTTTGA
*
72324038 TAACTGGGGCGTAAGCCCTTTGA
1 TAACT-GGGCATAAGCCCTTTGA
*
72324061 TAATTGGGCATAAGCCCTTTTGA
1 TAACTGGGCATAAGCCC-TTTGA
* *
72324084 T-ACTGGGCATAAGGCCTTTAA
1 TAACTGGGCATAAGCCCTTTGA
*
72324105 T-ACTGCGGCGTAAGCC
1 TAACTG-GGCATAAGCC
72324121 TTTTTTCACT
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
20 5 0.07
21 14 0.20
22 37 0.53
23 14 0.20
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (22 bp):
TAACTGGGCATAAGCCCTTTGA
Found at i:72324102 original size:22 final size:22
Alignment explanation
Indices: 72324007--72324124 Score: 93
Period size: 22 Copynumber: 5.4 Consensus size: 22
72323997 GGGCAAACGC
*
72324007 AGCCTTTTTATTAACTGGGCAT-
1 AGCCTTTTGA-TAACTGGGCATA
* *
72324029 AGCC-CTTGATAACTGGGGCGTA
1 AGCCTTTTGATAACT-GGGCATA
* *
72324051 AGCCCTTTGATAATTGGGCATA
1 AGCCTTTTGATAACTGGGCATA
72324073 AGCCCTTTTGAT-ACTGGGCATA
1 AG-CCTTTTGATAACTGGGCATA
* *
72324095 AGGCC-TTTAAT-ACTGCGGCGTA
1 A-GCCTTTTGATAACTG-GGCATA
72324117 AGCCTTTT
1 AGCCTTTT
72324125 TTCACTTCCT
Statistics
Matches: 79, Mismatches: 10, Indels: 14
0.77 0.10 0.14
Matches are distributed among these distances:
20 5 0.06
21 20 0.25
22 37 0.47
23 17 0.22
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (22 bp):
AGCCTTTTGATAACTGGGCATA
Found at i:72324202 original size:21 final size:20
Alignment explanation
Indices: 72324177--72324237 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
72324167 TATGAACTAC
*
72324177 ATCATGTGCGTATCCATACAT
1 ATCATGTGCATAT-CATACAT
72324198 ATCATGTGCAATATCATACAT
1 ATCATGTGC-ATATCATACAT
*
72324219 GTCATGT-CATATCATACAT
1 ATCATGTGCATATCATACAT
72324238 TACCATGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.30
20 1 0.03
21 22 0.59
22 3 0.08
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72324772 original size:8 final size:8
Alignment explanation
Indices: 72324759--72324804 Score: 83
Period size: 8 Copynumber: 5.8 Consensus size: 8
72324749 AAATGCCAGA
72324759 ATTTCGGC
1 ATTTCGGC
72324767 ATTTCGGC
1 ATTTCGGC
72324775 ATTTCGGC
1 ATTTCGGC
72324783 ATTTCGGC
1 ATTTCGGC
*
72324791 TTTTCGGC
1 ATTTCGGC
72324799 ATTTCG
1 ATTTCG
72324805 CTTTTAAGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.11, C:0.24, G:0.24, T:0.41
Consensus pattern (8 bp):
ATTTCGGC
Found at i:72347912 original size:39 final size:40
Alignment explanation
Indices: 72347867--72348075 Score: 116
Period size: 41 Copynumber: 5.2 Consensus size: 40
72347857 CGGGGTTTAG
* * *
72347867 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
72347906 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
72347946 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * * *
72347986 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGAGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * *
72348027 CCGGATATAGTCGCTTAGCAGAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
72348068 CCGGATAT
1 CCGGATAT
72348076 CATTCGAGTA
Statistics
Matches: 147, Mismatches: 19, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
39 18 0.12
40 61 0.41
41 66 0.45
42 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:72348017 original size:41 final size:41
Alignment explanation
Indices: 72347890--72348075 Score: 243
Period size: 41 Copynumber: 4.6 Consensus size: 41
72347880 CTCGCACAAG
* * * * * *
72347890 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
72347930 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
72347970 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
72348011 GCCTTCGAGACTTAGCCCGGATATAGTCGCTTAGCAGAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
72348052 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
72348076 CATTCGAGTA
Statistics
Matches: 130, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 59 0.45
41 66 0.51
42 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:72348025 original size:81 final size:82
Alignment explanation
Indices: 72347890--72348073 Score: 239
Period size: 81 Copynumber: 2.3 Consensus size: 82
72347880 CTCGCACAAG
* * * * * * * *
72347890 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGAGACTTAGCCCGGATAT
*
72347954 AGTCGC-TAGCACAAAT
66 AGTCGCTTAGCACAAAA
*
72347970 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGAGACTTAGCCCGGATA
1 GCCTTCGGGA-CTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGAGACTTAGCCCGGATA
*
72348034 TAGTCGCTTAGCAGAAAA
65 TAGTCGCTTAGCACAAAA
72348052 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
72348074 ATCATTCGAG
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 2 0.02
80 21 0.24
81 37 0.42
82 25 0.28
83 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.24
Consensus pattern (82 bp):
GCCTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGAGACTTAGCCCGGATAT
AGTCGCTTAGCACAAAA
Found at i:72354273 original size:27 final size:26
Alignment explanation
Indices: 72354233--72354345 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
72354223 AGCATGGCTG
* * *
72354233 CCAGAACATATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
72354259 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
72354287 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
72354314 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
72354341 CCAGA
1 CCAGA
72354346 GCGCTTCCTC
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:72354333 original size:54 final size:54
Alignment explanation
Indices: 72354233--72354345 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
72354223 AGCATGGCTG
* *
72354233 CCAGAACATATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
72354287 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
72354341 CCAGA
1 CCAGA
72354346 GCGCTTCCTC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:72356000 original size:26 final size:26
Alignment explanation
Indices: 72355964--72356073 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
72355954 CATGAAATTC
72355964 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
72355990 TTATCATGAAACATTTACCTAACCCT
1 TTATCATGAAACATTTACCTAACCCA
* *
72356016 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
72356042 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
72356068 TTATCA
1 TTATCA
72356074 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 77 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:72358685 original size:35 final size:35
Alignment explanation
Indices: 72358601--72359323 Score: 205
Period size: 37 Copynumber: 19.8 Consensus size: 35
72358591 GACAAAGATC
* ** *
72358601 TATCCCAACCTTTTTAAGTTTGCCTTAGGCGTGTT
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
72358636 TA-CCCTAACCTTTTTAAGGTTGCCTTAAACGGGTT
1 TATCCC-AACCTTTTTAAGGTTGCCTTAAACGGGTT
* * * * ** *
72358671 TATCCCAGCTTTTTTTAA-ATTGCATTGGAAA-AAGTG
1 TATCCCAAC-CTTTTTAAGGTTGCCTT--AAACGGGTT
* * ** ** *
72358707 TATCTCAACATTTTTAAGGTTGTTTTAAATAGGTC
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * * ** * *
72358742 TATCACAACATTTTTAAGGTTGTCTTAGGCAGGTC
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * * *
72358777 AATCCCAACCTTTTTTAAAAGTTGCCTTAGACAAGGTT
1 TATCCCAACC-TTTTT-AAGGTTGCCTTAAAC-GGGTT
* * * * ** *
72358815 TATCCCAACATTTTTAAGGTTACCTTAGATGAATC
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * ** *
72358850 TATCCCAACCTTTTTAAGGTTGCTTTAGACAAGTC
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * *
72358885 TATCCCAACCTTTTTTGAAGGTTGCCTTAGACAAGGTC
1 TATCCCAACC-TTTTT-AAGGTTGCCTTAAAC-GGGTT
* * * *
72358923 TATCCCAACATTTTTAAAAGGTTGCCTTAGACTGGTC
1 TATCCCAACCTTTTT--AAGGTTGCCTTAAACGGGTT
* * * *** **
72358960 TATTCCAACATTTTTAAAAGGTTGCCTTAGATAAGCC
1 TATCCCAACCTTTTT--AAGGTTGCCTTAAACGGGTT
* * ** * ****
72358997 TATCCTAACATTTTTTAAACATTGCCTTAGATAAATT
1 TATCCCAAC-CTTTTT-AAGGTTGCCTTAAACGGGTT
* * * * *
72359034 CTATCCCAACTTTTTTAAAAGGTTACCTTAGACTGGTC
1 -TATCCCAACCTTTTT--AAGGTTGCCTTAAACGGGTT
* *
72359072 TATCCCAACCTTTTTTAAAGGTTGCCTTAAACAAGGTC
1 TATCCCAACC-TTTTT-AAGGTTGCCTTAAAC-GGGTT
* * * * ***
72359110 TATACCAATCTATTTAAGGTTACCTTAAA-TAATT
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * ** *
72359144 ATATCCCAATCTTTTTTAAAGGTTTCCTTAGAAAAGGTC
1 -TATCCCAA-CCTTTTT-AAGGTTGCCTTA-AACGGGTT
* ** * * *
72359183 TATCTCAAATTTTTTAAATGTTGCCTTAGATA-AGGTC
1 TATCCCAACCTTTTT-AAGGTTGCCTTA-A-ACGGGTT
* ** * * *
72359220 TATCCCAACATTTTTAAAAAGGTTATCTTAGACTGGTC
1 TATCCCAACCTTTTT---AAGGTTGCCTTAAACGGGTT
*
72359258 TATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTT
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* *
72359293 TATCACAGCCTTTTTCAAAGGTTGGCCTTAA
1 TATCCCAACCTTTTT--AAGGTT-GCCTTAA
72359324 CTAGGTCTTT
Statistics
Matches: 543, Mismatches: 114, Indels: 59
0.76 0.16 0.08
Matches are distributed among these distances:
34 7 0.01
35 160 0.29
36 63 0.12
37 185 0.34
38 117 0.22
39 11 0.02
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (35 bp):
TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
Found at i:72358822 original size:38 final size:38
Alignment explanation
Indices: 72358737--72359340 Score: 498
Period size: 37 Copynumber: 16.4 Consensus size: 38
72358727 TGTTTTAAAT
* * * *
72358737 AGGTCTATCACAA-CATTTTT-AAGGTTGTCTTAGGC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* *
72358772 AGGTCAATCCCAACCTTTTTTAAAAGTTGCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
72358810 AGGTTTATCCCAA-CATTTTT-AAGGTTACCTTAGATGA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGA-CA
*
72358847 A--TCTATCCCAACC-TTTTT-AAGGTTGCTTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
*
72358881 A-GTCTATCCCAACCTTTTTTGAAGGTTGCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* *
72358918 AGGTCTATCCCAACATTTTTAAAAGGTTGCCTTAGAC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * *
72358955 TGGTCTATTCCAACATTTTTAAAAGGTTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * ** *
72358993 A-GCCTATCCTAACATTTTTTAAACATTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
** *
72359030 AATTCTATCCCAA-CTTTTTTAAAAGGTTACCTTAGAC-
1 AGGTCTATCCCAACCTTTTTT-AAAGGTTGCCTTAGACA
* *
72359067 TGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * * *
72359105 AGGTCTATACCAATC-TATTT-AAGGTTACCTTAAATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * *
72359141 A-TTATATCCCAATCTTTTTTAAAGGTTTCCTTAGAAA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
72359178 AGGTCTATCTCAA-ATTTTTTAAATGTTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * **
72359215 AGGTCTATCCCAACATTTTTAAAAAGGTTATCTTAGAC-
1 AGGTCTATCCCAACCTTTTT-TAAAGGTTGCCTTAGACA
*
72359253 TGGTCTATCCCAACC-TTTTT-AAGGTTGCCTTAGAC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * * *
72359288 GGGTTTATCACAGCCTTTTTCAAAGGTTGGCCTTA-ACT
1 AGGTCTATCCCAACCTTTTTTAAAGGTT-GCCTTAGACA
*
72359326 AGGTCTTTCCCAACC
1 AGGTCTATCCCAACC
72359341 CTTCAATAAG
Statistics
Matches: 462, Mismatches: 84, Indels: 43
0.78 0.14 0.07
Matches are distributed among these distances:
34 2 0.00
35 83 0.18
36 47 0.10
37 193 0.42
38 125 0.27
39 12 0.03
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (38 bp):
AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
Found at i:72359026 original size:112 final size:110
Alignment explanation
Indices: 72358738--72359322 Score: 463
Period size: 112 Copynumber: 5.3 Consensus size: 110
72358728 GTTTTAAATA
* * * * * * *
72358738 GGTCTATCACAACATTTTT-AAGGTTGTCTTAGGCAGGTCAATCCCAACCTTTTTTAAAAGTTGC
1 GGTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGCCTATCCCAACCTTTTTTAAAA-TTGC
*
72358802 CTTAGACAAGGTTTATCCCAACATTTTT--AAGGTTACCTTAGA-T
65 CTTAGACAAGGTCTATCCCAACATTTTTAAAAGGTTACCTTAGACT
* * * **
72358845 GAATCTATCCCAACCTTTTT-AAGGTTGCTTTAGACAAGTCTATCCCAACCTTTTTTGAAGGTTG
1 G-GTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGCCTATCCCAACCTTTTTT-AAAATTG
*
72358909 CCTTAGACAAGGTCTATCCCAACATTTTTAAAAGGTTGCCTTAGACT
64 CCTTAGACAAGGTCTATCCCAACATTTTTAAAAGGTTACCTTAGACT
* * * * *
72358956 GGTCTATTCCAACATTTTTAAAAGGTTGCCTTAGATAAGCCTATCCTAACATTTTTTAAACATTG
1 GGTCTATCCCAACCTTTTT-AAAGGTTGCCTTAGACAAGCCTATCCCAACCTTTTTTAAA-ATTG
* ** *
72359021 CCTTAGATAAATTCTATCCCAACTTTTTTAAAAGGTTACCTTAGACT
64 CCTTAGACAAGGTCTATCCCAACATTTTTAAAAGGTTACCTTAGACT
* * * * * ** *
72359068 GGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACAAGGTCTATACCAATC-TATTTAAGGTTA
1 GGTCTATCCCAACC-TTTTTAAAGGTTGCCTTAGACAA-GCCTATCCCAACCTTTTTTAAAATTG
* * * * * * **
72359132 CCTTAAATAA-TTATATCCCAATC-TTTTTTAAAGGTTTCCTTAGAAAA
64 CCTTAGACAAGGTCTATCCCAA-CATTTTTAAAAGGTTACCTTAG-ACT
* ** * * * * *
72359179 GGTCTATCTCAAATTTTTTAAATGTTGCCTTAGATAAGGTCTATCCCAACATTTTTAAAAAGGTT
1 GGTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAA-GCCTATCCCAACCTTTTTTAAAA--TT
** * * * *
72359244 ATCTTAGAC-TGGTCTATCCCAACCTTTTT--AAGGTTGCCTTAGACG
63 GCCTTAGACAAGGTCTATCCCAACATTTTTAAAAGGTTACCTTAGACT
* * *
72359289 GGTTTATCACAGCCTTTTTCAAAGGTTGGCCTTA
1 GGTCTATCCCAACCTTTTT-AAAGGTT-GCCTTA
72359323 ACTAGGTCTT
Statistics
Matches: 385, Mismatches: 74, Indels: 33
0.78 0.15 0.07
Matches are distributed among these distances:
107 1 0.00
108 77 0.20
109 2 0.01
110 102 0.26
111 51 0.13
112 117 0.30
113 35 0.09
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (110 bp):
GGTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGCCTATCCCAACCTTTTTTAAAATTGCC
TTAGACAAGGTCTATCCCAACATTTTTAAAAGGTTACCTTAGACT
Found at i:72364745 original size:43 final size:43
Alignment explanation
Indices: 72364694--72364919 Score: 299
Period size: 43 Copynumber: 5.3 Consensus size: 43
72364684 TTAAAAAAAA
*
72364694 GCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
72364737 GCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAAAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
72364780 GCCGCTAAAGACCAGGACCTTTAGCGGTGCTTTTCCCAAAAAT
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* ** *
72364823 GCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTTTCACAATC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * * *
72364866 ACCGCTAAAAACCATAACCTTTTGCGGCACTTTTCCCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
72364909 GCCGCTAAAGA
1 GCCGCTAAAGA
72364920 ATATAACCTT
Statistics
Matches: 158, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 158 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:72365001 original size:7 final size:7
Alignment explanation
Indices: 72364992--72365035 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
72364982 TTTTTTATTT
*
72364992 TTTAAAT
1 TTTAAAC
72364999 TTTAAA-
1 TTTAAAC
*
72365005 TTTGAAC
1 TTTAAAC
72365012 TTTAAAC
1 TTTAAAC
72365019 TTTAAAC
1 TTTAAAC
*
72365026 TTTATAC
1 TTTAAAC
72365033 TTT
1 TTT
72365036 TAAGGATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
6 5 0.15
7 28 0.85
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.52
Consensus pattern (7 bp):
TTTAAAC
Found at i:72366822 original size:18 final size:18
Alignment explanation
Indices: 72366779--72366815 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
72366769 TGATGGAGTT
72366779 CAAATTAAGAAATTACTA
1 CAAATTAAGAAATTACTA
72366797 CAAATTAAGAAATTACTA
1 CAAATTAAGAAATTACTA
72366815 C
1 C
72366816 TTGTTAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (18 bp):
CAAATTAAGAAATTACTA
Found at i:72367084 original size:28 final size:29
Alignment explanation
Indices: 72367049--72367103 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
72367039 CACGGGCTGA
72367049 GACACGGGCGTGT-C-ATGGCCGTGTGAGG
1 GACACGGGCGTGTGCTA-GGCCGTGTGAGG
*
72367077 GACACGGGCTTGTGCTAGGCCGTGTGA
1 GACACGGGCGTGTGCTAGGCCGTGTGA
72367104 AAATTGCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 12 0.50
29 11 0.46
30 1 0.04
ACGTcount: A:0.15, C:0.22, G:0.44, T:0.20
Consensus pattern (29 bp):
GACACGGGCGTGTGCTAGGCCGTGTGAGG
Found at i:72382961 original size:43 final size:43
Alignment explanation
Indices: 72382807--72383126 Score: 362
Period size: 43 Copynumber: 7.5 Consensus size: 43
72382797 AATATTTTTT
* * * *
72382807 TAAAGGTCAGGTTCTTTAGCGGCGTTTGT-GAGAAAAGTACCGT
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGA-AAAAGTGCCGC
* * * * * * *
72382850 TAAAGGTC-TGCTCTATAGTGGTGCTTGTAGCAAAAGCGCCAC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTGCCGC
*
72382892 TAAAGGTC-TGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTGCCGC
* * * *
72382934 TAAAGGTCATGTTCTTTAGCAGCGTTTGTAG-CAAAG-CCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTGCCGC
* *
72382975 TAAAGGTCATGTTCTATAGCGGTGTTTGTGGAAAAAGTGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTGCCGC
* * **
72383018 TAAAGGTCATTTTCTATAGCGGCGTTTGTAAAAAAAGAACCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTGCCGC
** *
72383061 TAAAGGTCATGTTCTATAATGGCGTTTGTAAAAAAAGTGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTGCCGC
*
72383104 TAAAGGTCATGTTCTATAACGGC
1 TAAAGGTCATGTTCTATAGCGGC
72383127 ATTTTTTTAC
Statistics
Matches: 231, Mismatches: 42, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
41 31 0.13
42 71 0.31
43 129 0.56
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTGCCGC
Found at i:72382970 original size:84 final size:84
Alignment explanation
Indices: 72382807--72383126 Score: 385
Period size: 84 Copynumber: 3.8 Consensus size: 84
72382797 AATATTTTTT
* * * * * *
72382807 TAAAGGTCAGGTTCTTTAGCGGCGTTTGT-GAGAAAAGTACCGTTAAAGGTC-TGCTCTATAGTG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGA-AAAAGTGCCGCTAAAGGTCATGTTCTATAGCG
* * *
72382870 GTGCTTGTAGCAAAAGCGCCAC
65 GCGTTTGTAGC-AAAGC-CCGC
* *
72382892 TAAAGGTC-TGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGGTCATGTTCTTTAGCAG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGGTCATGTTCTATAGCGG
72382956 CGTTTGTAGCAAAGCCCGC
66 CGTTTGTAGCAAAGCCCGC
* *
72382975 TAAAGGTCATGTTCTATAGCGGTGTTTGTGGAAAAAGTGCCGCTAAAGGTCATTTTCTATAGCGG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGGTCATGTTCTATAGCGG
** *
72383040 CGTTTGTAAAAAAAGAACCGC
66 CGTTTGT-AGCAAAG-CCCGC
** ** *
72383061 TAAAGGTCATGTTCTATAATGGCGTTTGTAAAAAAAGTGCCGCTAAAGGTCATGTTCTATAACGG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGGTCATGTTCTATAGCGG
72383126 C
66 C
72383127 ATTTTTTTAC
Statistics
Matches: 205, Mismatches: 25, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
83 11 0.05
84 99 0.48
85 32 0.16
86 63 0.31
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (84 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGGTCATGTTCTATAGCGG
CGTTTGTAGCAAAGCCCGC
Found at i:72383033 original size:127 final size:128
Alignment explanation
Indices: 72382807--72383121 Score: 393
Period size: 127 Copynumber: 2.5 Consensus size: 128
72382797 AATATTTTTT
* * * * *
72382807 TAAAGGTCAGGTTCTTTAGCGGCGTTTGTGAGAAAAGTACCGTTAAAGGTC-TGCTCTATAGTGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATAGCGG
* ** **
72382871 TGCTTGTAGCAAAAGCGCCACTAAAGGTCTGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGC
66 TGCTTGTAGAAAAAGCGCCACTAAAGGTCTGTTCTATAGCGGCGTTTGTAAAAAAAGAACCGC
* * *
72382934 TAAAGGTCATGTTCTTTAGCAGCGTTTGT-AGCAAAG-CCCGCTAAAGGTCATGTTCTATAGCGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATAGCGG
* * * * *
72382997 TGTTTGTGGAAAAAGTGCCGCTAAAGGTCATTTTCTATAGCGGCGTTTGTAAAAAAAGAACCGC
66 TGCTTGTAGAAAAAGCGCCACTAAAGGTC-TGTTCTATAGCGGCGTTTGTAAAAAAAGAACCGC
* ** * *
72383061 TAAAGGTCATGTTCTATAATGGCGTTTGTAAAAAAAGTGCCGCTAAAGGTCATGTTCTATA
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATA
72383122 ACGGCATTTT
Statistics
Matches: 160, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
125 11 0.07
126 41 0.26
127 81 0.51
128 5 0.03
129 22 0.14
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (128 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATAGCGG
TGCTTGTAGAAAAAGCGCCACTAAAGGTCTGTTCTATAGCGGCGTTTGTAAAAAAAGAACCGC
Found at i:72385328 original size:30 final size:30
Alignment explanation
Indices: 72385294--72385355 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
72385284 GTCCTTAACT
72385294 TAAACTTTTGCAAAATTACAATTTTGCCCC
1 TAAACTTTTGCAAAATTACAATTTTGCCCC
* * * *
72385324 TAAACTTTTGCATATTTACACTTTTTCCCC
1 TAAACTTTTGCAAAATTACAATTTTGCCCC
72385354 TA
1 TA
72385356 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (30 bp):
TAAACTTTTGCAAAATTACAATTTTGCCCC
Found at i:72390154 original size:34 final size:34
Alignment explanation
Indices: 72390111--72390178 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
72390101 CGACCATCAC
*
72390111 CAACAGGCCAATAAACATTATTGAGAACCTCTGG
1 CAACAGGCCAATAAACATTATTAAGAACCTCTGG
72390145 CAACAGGCCAATAAACATTATTAAGAACCTCTGG
1 CAACAGGCCAATAAACATTATTAAGAACCTCTGG
72390179 TCAGACTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.21
Consensus pattern (34 bp):
CAACAGGCCAATAAACATTATTAAGAACCTCTGG
Found at i:72392468 original size:47 final size:49
Alignment explanation
Indices: 72392350--72392529 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 49
72392340 TGTAACCCGC
* * *
72392350 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
* *
72392396 CCATGAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
72392446 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
72392489 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
72392530 CAAACATCCT
Statistics
Matches: 113, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.55
47 29 0.26
48 3 0.03
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (49 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:72392521 original size:93 final size:93
Alignment explanation
Indices: 72392358--72392529 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
72392348 GCCCATAAGC
* * *
72392358 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
72392423 TGAGTTCGGATGCCTAGTTACATCTCAT
66 CGAGTTCGGATGCCTAGTTACATCTCAT
* *
72392451 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
72392516 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72392530 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAT
Found at i:72409295 original size:68 final size:69
Alignment explanation
Indices: 72409173--72409309 Score: 258
Period size: 68 Copynumber: 2.0 Consensus size: 69
72409163 CCAAATTTTA
*
72409173 CAGGTCAAGTAACAGACATTTCATAAACGTTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
1 CAGGTCAAGTAACAGACATTTCATAAACATTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
72409238 ATAT
66 ATAT
72409242 CAGGTCAAGTAACAGACATTTCAT-AACATTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
1 CAGGTCAAGTAACAGACATTTCATAAACATTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
72409306 ATAT
66 ATAT
72409310 AGTCCCTTAC
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
68 43 0.64
69 24 0.36
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (69 bp):
CAGGTCAAGTAACAGACATTTCATAAACATTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
ATAT
Found at i:72409912 original size:26 final size:25
Alignment explanation
Indices: 72409883--72409931 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
72409873 GCACTCTCTC
*
72409883 GAGCCATATATCAGGAATGCTTATAT
1 GAGCCATATAACAGGAA-GCTTATAT
*
72409909 GAGCCATGTAACAGGAAGCTTAT
1 GAGCCATATAACAGGAAGCTTAT
72409932 CCGGGCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTTATAT
Found at i:72410231 original size:65 final size:65
Alignment explanation
Indices: 72410093--72410234 Score: 153
Period size: 65 Copynumber: 2.2 Consensus size: 65
72410083 GCCATATCAG
* * * * * * * *
72410093 GATGCTCATAAAGAGCTGCGTTTGTGTCCGTAACATATGCAAGATCACAACTGATCGCATACCAA
1 GATGCTCACAAAAAGATGTGTTTATGTCCGCAACATATGCAAGATCACAACTGATCGAATAACAA
*
72410158 GATGCTCACAAAAAGATGTGTTTATGTCCGCAACATATGCAGGATCACAA-TCGATC-AATAAAC
1 GATGCTCACAAAAAGATGTGTTTATGTCCGCAACATATGCAAGATCACAACT-GATCGAAT-AAC
*
72410221 AG
64 AA
*
72410223 GATTCTCACAAA
1 GATGCTCACAAA
72410235 GAGCTGCGGT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
64 3 0.05
65 61 0.95
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (65 bp):
GATGCTCACAAAAAGATGTGTTTATGTCCGCAACATATGCAAGATCACAACTGATCGAATAACAA
Found at i:72410889 original size:21 final size:21
Alignment explanation
Indices: 72410855--72410896 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72410845 AGCCCATATA
*
72410855 TTTCACAAAATTTAGAATTTT
1 TTTCACAAAATTTACAATTTT
* *
72410876 TTTCATAAATTTTACAATTTT
1 TTTCACAAAATTTACAATTTT
72410897 ACAATTTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (21 bp):
TTTCACAAAATTTACAATTTT
Found at i:72414802 original size:16 final size:16
Alignment explanation
Indices: 72414783--72414814 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
72414773 TGTCAACAAG
72414783 TTAAAGCCGAGCATCA
1 TTAAAGCCGAGCATCA
*
72414799 TTAAAGCCTAGCATCA
1 TTAAAGCCGAGCATCA
72414815 GGTACCTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.22
Consensus pattern (16 bp):
TTAAAGCCGAGCATCA
Found at i:72430109 original size:47 final size:47
Alignment explanation
Indices: 72430031--72430436 Score: 632
Period size: 47 Copynumber: 8.6 Consensus size: 47
72430021 CCCTTCGGGA
* * * * * *
72430031 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72430078 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72430125 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72430172 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72430219 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72430268 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72430315 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72430364 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72430411 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
72430437 CACAATTATC
Statistics
Matches: 331, Mismatches: 24, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 241 0.73
49 90 0.27
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72430269 original size:96 final size:96
Alignment explanation
Indices: 72430031--72430436 Score: 689
Period size: 96 Copynumber: 4.3 Consensus size: 96
72430021 CCCTTCGGGA
* * * * *
72430031 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72430094 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
72430125 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72430188 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72430219 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72430284 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72430315 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72430380 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72430411 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
72430437 CACAATTATC
Statistics
Matches: 295, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
93 1 0.00
94 96 0.33
96 198 0.67
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72430287 original size:143 final size:141
Alignment explanation
Indices: 72430031--72430436 Score: 650
Period size: 143 Copynumber: 2.9 Consensus size: 141
72430021 CCCTTCGGGA
* * * * * *
72430031 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
72430096 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
72430161 GGCTATTAGGC
131 GGCCATTAGGC
* *
72430172 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
72430237 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
72430302 TCGGCCATTAGGC
129 TCGGCCATTAGGC
72430315 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
72430380 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
72430437 CACAATTATC
Statistics
Matches: 243, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
141 47 0.19
143 151 0.62
145 45 0.19
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:72444823 original size:24 final size:25
Alignment explanation
Indices: 72444795--72444853 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
72444785 CTTTTTTTAT
*
72444795 TAAATAAA-AAATTTTAAAATATAA
1 TAAATAAATAAATTTAAAAATATAA
*
72444819 TAAATCAAATACATTTAAAAATATAA
1 TAAAT-AAATAAATTTAAAAATATAA
72444845 -AAATAAATA
1 TAAATAAATA
72444854 TTAAAACAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.32
25 7 0.23
26 14 0.45
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (25 bp):
TAAATAAATAAATTTAAAAATATAA
Found at i:72444877 original size:18 final size:19
Alignment explanation
Indices: 72444843--72444885 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
72444833 TTAAAAATAT
*
72444843 AAAAATAAATATTAAAACA
1 AAAAATAAATATAAAAACA
*
72444862 AAAAATAAATA-AAAAATA
1 AAAAATAAATATAAAAACA
72444880 AAAAAT
1 AAAAAT
72444886 GAGACTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (19 bp):
AAAAATAAATATAAAAACA
Found at i:72445097 original size:15 final size:16
Alignment explanation
Indices: 72445077--72445106 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72445067 AAAGTTACTT
72445077 AAAA-TTAAAAATAAA
1 AAAATTTAAAAATAAA
72445092 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
72445107 TTTAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATTTAAAAATAAA
Found at i:72446632 original size:52 final size:52
Alignment explanation
Indices: 72446570--72446671 Score: 168
Period size: 52 Copynumber: 2.0 Consensus size: 52
72446560 TACTTGTCCG
* *
72446570 CTTTTTAACAGGTAATTTTGGCAATTCCATAGATATTGTTGAATATCCTTCA
1 CTTTTTAACAGGTAATTTTGGCAATTCCATAGATACTGTTGAATACCCTTCA
* *
72446622 CTTTTTAACAGGTAATTTTGGTAATTCCCTAGATACTGTTGAATACCCTT
1 CTTTTTAACAGGTAATTTTGGCAATTCCATAGATACTGTTGAATACCCTT
72446672 TTGTTCTTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (52 bp):
CTTTTTAACAGGTAATTTTGGCAATTCCATAGATACTGTTGAATACCCTTCA
Found at i:72447400 original size:21 final size:20
Alignment explanation
Indices: 72447376--72447414 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
72447366 GAAACTGAGT
*
72447376 CATTAGAGTTGAAATTGAAAC
1 CATTAGA-TTGAAAATGAAAC
*
72447397 CATTATATTGAAAATGAA
1 CATTAGATTGAAAATGAA
72447415 TCTACAATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (20 bp):
CATTAGATTGAAAATGAAAC
Found at i:72448572 original size:24 final size:23
Alignment explanation
Indices: 72448513--72448561 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
72448503 GTGAAGGGGA
72448513 ATTAAAATAAAAAACTTCAAAAT
1 ATTAAAATAAAAAACTTCAAAAT
72448536 ATTAAAATAAAAAACTTCAAAAT
1 ATTAAAATAAAAAACTTCAAAAT
72448559 ATT
1 ATT
72448562 TCTTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (23 bp):
ATTAAAATAAAAAACTTCAAAAT
Found at i:72453798 original size:16 final size:16
Alignment explanation
Indices: 72453777--72453823 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
72453767 TTGTTGGATT
*
72453777 TTGAATTTATTATGTC
1 TTGAATTTATTATGTA
* **
72453793 TTGAATTTGTTACATA
1 TTGAATTTATTATGTA
72453809 TTGAATTTATTATGT
1 TTGAATTTATTATGT
72453824 TTTAAGCTTG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.55
Consensus pattern (16 bp):
TTGAATTTATTATGTA
Found at i:72453803 original size:32 final size:32
Alignment explanation
Indices: 72453766--72453845 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
72453756 GAAAATTTAC
*
72453766 TTTGTTGGATTTTGAATTTATTATGTCTTGAA-
1 TTTGTTGGATATTGAATTTATTATGT-TTGAAG
** *
72453798 TTTGTTACATATTGAATTTATTATGTTTTAAG
1 TTTGTTGGATATTGAATTTATTATGTTTGAAG
*
72453830 CTTGTTGGATATTGAA
1 TTTGTTGGATATTGAA
72453846 ATGATTGACA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 4 0.10
32 36 0.90
ACGTcount: A:0.25, C:0.04, G:0.17, T:0.54
Consensus pattern (32 bp):
TTTGTTGGATATTGAATTTATTATGTTTGAAG
Found at i:72455193 original size:19 final size:20
Alignment explanation
Indices: 72455169--72455210 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
72455159 CAAACACCAA
72455169 AAAAGTAAATCATTTTC-AG
1 AAAAGTAAATCATTTTCTAG
72455188 AAAAGTAAATCATTTTCTAG
1 AAAAGTAAATCATTTTCTAG
72455208 AAA
1 AAA
72455211 TCATTTTCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.31
Consensus pattern (20 bp):
AAAAGTAAATCATTTTCTAG
Found at i:72457722 original size:20 final size:21
Alignment explanation
Indices: 72457697--72457764 Score: 75
Period size: 23 Copynumber: 3.2 Consensus size: 21
72457687 AAATGTTGTC
72457697 TTTTTTACTA-TTTCTTGCTA
1 TTTTTTACTATTTTCTTGCTA
* *
72457717 TTTTTTATTATTTTCTTGTTA
1 TTTTTTACTATTTTCTTGCTA
* *
72457738 TTTTTTTCACTATTTTGTTACTA
1 -TTTTTT-ACTATTTTCTTGCTA
72457761 TTTT
1 TTTT
72457765 ACAATTATGT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
20 9 0.23
21 9 0.23
22 10 0.26
23 11 0.28
ACGTcount: A:0.15, C:0.10, G:0.04, T:0.71
Consensus pattern (21 bp):
TTTTTTACTATTTTCTTGCTA
Found at i:72457731 original size:21 final size:20
Alignment explanation
Indices: 72457697--72457743 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
72457687 AAATGTTGTC
72457697 TTTTTTACTATTTCTTGCTA
1 TTTTTTACTATTTCTTGCTA
* *
72457717 TTTTTTATTATTTTCTTGTTA
1 TTTTTTACTA-TTTCTTGCTA
72457738 TTTTTT
1 TTTTTT
72457744 TCACTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.74
Consensus pattern (20 bp):
TTTTTTACTATTTCTTGCTA
Found at i:72459120 original size:14 final size:11
Alignment explanation
Indices: 72459087--72459112 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
72459077 CCGAATTAAC
72459087 TTTTTATATTA
1 TTTTTATATTA
72459098 TTTTTATATTA
1 TTTTTATATTA
72459109 TTTT
1 TTTT
72459113 AAATATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTATATTA
Found at i:72459814 original size:17 final size:17
Alignment explanation
Indices: 72459792--72459841 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
72459782 TTTTTTAAAT
*
72459792 AATCTTTTTTAACTTTC
1 AATCTTTTTTAAATTTC
*
72459809 AATCTTTCTTTAAATTTT
1 AATCTTT-TTTAAATTTC
72459827 AAT-TTTTTTAAATTT
1 AATCTTTTTTAAATTT
72459842 TTTCCATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 9 0.30
17 10 0.33
18 11 0.37
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (17 bp):
AATCTTTTTTAAATTTC
Found at i:72461473 original size:24 final size:23
Alignment explanation
Indices: 72461441--72461494 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
72461431 ATCGAAAAGT
* *
72461441 TCACAAAGAACCATATTAGGAAGC
1 TCACAAAGAACC-TATCAAGAAGC
* *
72461465 TCACGAAGAGCCTATCAAGAAGC
1 TCACAAAGAACCTATCAAGAAGC
72461488 TCACAAA
1 TCACAAA
72461495 AAGCCATGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.44, C:0.24, G:0.17, T:0.15
Consensus pattern (23 bp):
TCACAAAGAACCTATCAAGAAGC
Found at i:72463443 original size:50 final size:50
Alignment explanation
Indices: 72463317--72463459 Score: 160
Period size: 51 Copynumber: 2.8 Consensus size: 50
72463307 TAGTGATCAA
** * * * * *
72463317 AACCATCTCTTACACATAGTGGCCTGCACTTAGTACCACATATGTGATCG
1 AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCG
* * * *
72463367 AAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 AA-CCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCG
* *
72463418 AACCATCTGGTACACGTAGTAGCCTGCACTTGGTACTACACA
1 AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
72463460 CGTGGCCTAA
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
50 37 0.49
51 39 0.51
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (50 bp):
AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCG
Found at i:72471802 original size:21 final size:21
Alignment explanation
Indices: 72471778--72471819 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72471768 TAATAATAAA
*
72471778 TTTTAATAGATATTTTTAATT
1 TTTTAATAGATAATTTTAATT
**
72471799 TTTTAATTTATAATTTTAATT
1 TTTTAATAGATAATTTTAATT
72471820 GAAAGTAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTAATAGATAATTTTAATT
Found at i:72478412 original size:9 final size:9
Alignment explanation
Indices: 72478398--72478431 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
72478388 TAAATAAACA
72478398 GATGGATGT
1 GATGGATGT
72478407 GATGGATGT
1 GATGGATGT
*
72478416 GATAGATGT
1 GATGGATGT
72478425 GATGGAT
1 GATGGAT
72478432 AGATGGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.32
Consensus pattern (9 bp):
GATGGATGT
Found at i:72480967 original size:57 final size:57
Alignment explanation
Indices: 72480851--72481022 Score: 169
Period size: 51 Copynumber: 3.1 Consensus size: 57
72480841 ATTTTCAAGT
* * * * * *
72480851 CATTTTCATTTACATTTTGAAGCAAACCACATTCATTTCCAAATTATTTCA-TT-T-
1 CATTTTCATTTTCATTTTGAAGAAAACCATAATCATTTCCAAATGATTTTATTTCTC
*
72480905 C---TTCATTTTCATTTTGAAGAAAACCATAATCATTTCGAAATGATTTTATTTCTC
1 CATTTTCATTTTCATTTTGAAGAAAACCATAATCATTTCCAAATGATTTTATTTCTC
* * * **
72480959 CATTTTCATTTTTATCTTGGAGAAAACTGTAATCATTTCCAAATG-TTTCTCATTTCTC
1 CATTTTCATTTTCATTTTGAAGAAAACCATAATCATTTCCAAATGATTT-T-ATTTCTC
72481017 CATTTT
1 CATTTT
72481023 TCATCATTTC
Statistics
Matches: 97, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
51 40 0.41
52 2 0.02
53 1 0.01
54 2 0.02
56 3 0.03
57 36 0.37
58 13 0.13
ACGTcount: A:0.29, C:0.19, G:0.06, T:0.46
Consensus pattern (57 bp):
CATTTTCATTTTCATTTTGAAGAAAACCATAATCATTTCCAAATGATTTTATTTCTC
Found at i:72481967 original size:13 final size:13
Alignment explanation
Indices: 72481949--72481974 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72481939 CGAATTCATA
72481949 ATTATAATAATTT
1 ATTATAATAATTT
72481962 ATTATAATAATTT
1 ATTATAATAATTT
72481975 TGGTAAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:72485375 original size:36 final size:34
Alignment explanation
Indices: 72485326--72485392 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 34
72485316 TGATTATTTC
72485326 TCACACATTTAATAAATA-ATAATAATAAAGATAT
1 TCACACATTTAATAAATATAT-ATAATAAAGATAT
*
72485360 TCACACTATATTAATAAATATATTTAATAAAGA
1 TCACAC-AT-TTAATAAATATATATAATAAAGA
72485393 ATAATAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 6 0.21
35 2 0.07
36 19 0.66
37 2 0.07
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (34 bp):
TCACACATTTAATAAATATATATAATAAAGATAT
Found at i:72487574 original size:20 final size:21
Alignment explanation
Indices: 72487534--72487575 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
72487524 ATATTCAAAT
*
72487534 ATTATTCAAATATAAATATAA
1 ATTATTCAAAAATAAATATAA
*
72487555 ATTATT-AAAAATATATATAA
1 ATTATTCAAAAATAAATATAA
72487575 A
1 A
72487576 AAGTAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
ATTATTCAAAAATAAATATAA
Found at i:72489389 original size:47 final size:47
Alignment explanation
Indices: 72489337--72489437 Score: 118
Period size: 47 Copynumber: 2.2 Consensus size: 47
72489327 TATTTATTTA
*
72489337 TTTATTATTAT-TAACTTTAAAAAATTTGAAATATATATTTGAAA-TAT
1 TTTATTAATATAT-ACTTTAAAAAATTTGAAATATAT-TTTGAAATTAT
* ** *
72489384 TTTATTAATATATATTTTTTAAAATTTTAAATATATTTTGAAATTAT
1 TTTATTAATATATACTTTAAAAAATTTGAAATATATTTTGAAATTAT
72489431 TTT-TTAA
1 TTTATTAA
72489438 AATTTTAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
46 11 0.23
47 35 0.74
48 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (47 bp):
TTTATTAATATATACTTTAAAAAATTTGAAATATATTTTGAAATTAT
Found at i:72489431 original size:11 final size:11
Alignment explanation
Indices: 72489369--72489478 Score: 58
Period size: 11 Copynumber: 10.4 Consensus size: 11
72489359 AATTTGAAAT
*
72489369 ATATATTTGAA
1 ATATATTTTAA
*
72489380 ATATTTTATTAA
1 ATATATT-TTAA
*
72489392 TATATATTTTTTA
1 -ATATA-TTTTAA
72489405 A-A-ATTTTAA
1 ATATATTTTAA
72489414 ATATATTTTGAA
1 ATATATTTT-AA
*
72489426 AT-TATTTTTTA
1 ATATA-TTTTAA
72489437 A-A-ATTTTAA
1 ATATATTTTAA
72489446 ATAT-TTTTAA
1 ATATATTTTAA
72489456 A-ATA--TTAA
1 ATATATTTTAA
* *
72489464 ATATTTTTTTA
1 ATATATTTTAA
72489475 ATAT
1 ATAT
72489479 TATAAAATAT
Statistics
Matches: 76, Mismatches: 9, Indels: 28
0.67 0.08 0.25
Matches are distributed among these distances:
8 5 0.07
9 16 0.21
10 11 0.14
11 23 0.30
12 12 0.16
13 7 0.09
14 2 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (11 bp):
ATATATTTTAA
Found at i:72489434 original size:32 final size:31
Alignment explanation
Indices: 72489373--72489458 Score: 109
Period size: 32 Copynumber: 2.6 Consensus size: 31
72489363 TGAAATATAT
* *
72489373 ATTTGAAATATTTTATTAATATATATTTTTTAAA
1 ATTTTAAATA-TTT-TTAAAAT-TATTTTTTAAA
*
72489407 ATTTTAAATATATTTTGAAATTATTTTTTAAA
1 ATTTTAAATAT-TTTTAAAATTATTTTTTAAA
72489439 ATTTTAAATATTTTTAAAAT
1 ATTTTAAATATTTTTAAAAT
72489459 ATTAAATATT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
31 8 0.17
32 22 0.47
33 6 0.13
34 11 0.23
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (31 bp):
ATTTTAAATATTTTTAAAATTATTTTTTAAA
Found at i:72489454 original size:18 final size:18
Alignment explanation
Indices: 72489399--72489502 Score: 85
Period size: 18 Copynumber: 5.9 Consensus size: 18
72489389 TAATATATAT
72489399 TTTTTAAAATTTTAAATA
1 TTTTTAAAATTTTAAATA
*
72489417 TATTTTGAAA--TT--AT-
1 T-TTTTAAAATTTTAAATA
72489431 TTTTTAAAATTTTAAATA
1 TTTTTAAAATTTTAAATA
*
72489449 TTTTTAAAATATTAAATA
1 TTTTTAAAATTTTAAATA
* *
72489467 TTTTTTTAATATTATAAA-A
1 --TTTTTAAAATTTTAAATA
*
72489486 TATTTAAATATTTTAAA
1 TTTTTAAA-ATTTTAAA
72489503 CTTTCAAATT
Statistics
Matches: 68, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
13 7 0.10
14 1 0.01
15 4 0.06
17 10 0.15
18 25 0.37
19 8 0.12
20 13 0.19
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (18 bp):
TTTTTAAAATTTTAAATA
Found at i:72489693 original size:15 final size:16
Alignment explanation
Indices: 72489675--72489714 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 16
72489665 AATAAAAATT
72489675 AAAAAATATTTGTTAA
1 AAAAAATATTTGTTAA
72489691 AAAAAGATTTATTTGTTAA
1 AAAAA-A--TATTTGTTAA
72489710 AAAAA
1 AAAAA
72489715 TGGATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.24
17 1 0.05
19 15 0.71
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (16 bp):
AAAAAATATTTGTTAA
Found at i:72489775 original size:19 final size:19
Alignment explanation
Indices: 72489740--72489787 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
72489730 ATATATATTA
* *
72489740 AAAAATAAAAATAAAAATT
1 AAAAATTAAATTAAAAATT
* *
72489759 TAAATTTAAATTAAAAATT
1 AAAAATTAAATTAAAAATT
72489778 AAAAATTAAA
1 AAAAATTAAA
72489788 AATATATATT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAAATTAAATTAAAAATT
Found at i:72489778 original size:7 final size:7
Alignment explanation
Indices: 72489736--72489790 Score: 62
Period size: 7 Copynumber: 8.3 Consensus size: 7
72489726 AAATATATAT
72489736 ATTAAAA
1 ATTAAAA
*
72489743 AATAAAA
1 ATTAAAA
72489750 A-TAAAA
1 ATTAAAA
*
72489756 ATT-TAA
1 ATTAAAA
*
72489762 ATT-TAA
1 ATTAAAA
72489768 ATTAAAA
1 ATTAAAA
72489775 ATTAAAA
1 ATTAAAA
72489782 ATTAAAA
1 ATTAAAA
72489789 AT
1 AT
72489791 ATATATTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
6 17 0.40
7 26 0.60
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
ATTAAAA
Found at i:72489973 original size:13 final size:13
Alignment explanation
Indices: 72489957--72489999 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
72489947 TTTTTCTTAT
*
72489957 TTTATTTTGTTTA
1 TTTATTTTATTTA
72489970 TTTATTTTATTTA
1 TTTATTTTATTTA
*
72489983 TTT-TTGTTATTAA
1 TTTATT-TTATTTA
72489996 TTTA
1 TTTA
72490000 AAAAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 2 0.08
13 24 0.92
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:72489992 original size:18 final size:16
Alignment explanation
Indices: 72489946--72489993 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 16
72489936 AAATTTTAAA
*
72489946 TTTTTTCTTATTTTAT
1 TTTTTTTTTATTTTAT
72489962 TTTGTTTATTTATTTTAT
1 TTT-TTT-TTTATTTTAT
72489980 TTATTTTTGTTATT
1 TT-TTTTT-TTATT
72489994 AATTTAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 3 0.11
17 4 0.15
18 19 0.70
19 1 0.04
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (16 bp):
TTTTTTTTTATTTTAT
Found at i:72489992 original size:22 final size:22
Alignment explanation
Indices: 72489957--72489998 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
72489947 TTTTTCTTAT
*
72489957 TTTATTTTGTTTATTTATTTTA
1 TTTATTTTGTTTATTAATTTTA
72489979 TTTATTTT-TGTTATTAATTT
1 TTTATTTTGT-TTATTAATTT
72489999 AAAAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (22 bp):
TTTATTTTGTTTATTAATTTTA
Found at i:72489993 original size:9 final size:9
Alignment explanation
Indices: 72489953--72489986 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
72489943 AAATTTTTTC
72489953 TTATTTTAT
1 TTATTTTAT
72489962 TT-TGTTTAT
1 TTAT-TTTAT
72489971 TTATTTTAT
1 TTATTTTAT
72489980 TTATTTT
1 TTATTTT
72489987 TGTTATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (9 bp):
TTATTTTAT
Found at i:72490075 original size:11 final size:12
Alignment explanation
Indices: 72490059--72490193 Score: 68
Period size: 13 Copynumber: 11.1 Consensus size: 12
72490049 AACTTTAAAT
72490059 ATTA-TTTTTAA
1 ATTATTTTTTAA
72490070 ATTATTTTTTAA
1 ATTATTTTTTAA
***
72490082 ATT-TTGAGT--
1 ATTATTTTTTAA
72490091 ATTATATTTTTAA
1 ATTAT-TTTTTAA
* *
72490104 ATTATGTCTTATA
1 ATTATTTTTTA-A
**
72490117 A--ATTTTAAAA
1 ATTATTTTTTAA
72490127 ATATATTTTTTAA
1 AT-TATTTTTTAA
72490140 ATTTATTTTTATAA
1 A-TTATTTTT-TAA
72490154 ATT-TTAAATTTTAA
1 ATTATT---TTTTAA
72490168 ATATATTTTTTAA
1 AT-TATTTTTTAA
*
72490181 AATATTTTTTAA
1 ATTATTTTTTAA
72490193 A
1 A
72490194 CAAAATAAAA
Statistics
Matches: 93, Mismatches: 15, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
9 3 0.03
10 3 0.03
11 13 0.14
12 27 0.29
13 31 0.33
14 10 0.11
15 4 0.04
16 2 0.02
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.59
Consensus pattern (12 bp):
ATTATTTTTTAA
Found at i:72490183 original size:21 final size:20
Alignment explanation
Indices: 72490115--72490181 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
72490105 TTATGTCTTA
72490115 TAAATTTTAAAAATATATTTTT
1 TAAATTTT--AAATATATTTTT
*** **
72490137 TAAATTTATTTTTATAAATTT
1 TAAATTT-TAAATATATTTTT
72490158 TAAATTTTAAATATATTTTT
1 TAAATTTTAAATATATTTTT
72490178 TAAA
1 TAAA
72490182 ATATTTTTTA
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
20 12 0.35
21 14 0.41
22 7 0.21
23 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TAAATTTTAAATATATTTTT
Found at i:72490240 original size:20 final size:22
Alignment explanation
Indices: 72490205--72490250 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
72490195 AAAATAAAAT
72490205 AATTTCAAAAATATATATTT-A
1 AATTTCAAAAATATATATTTGA
* *
72490226 AATTT-AAATATATATTTTTGA
1 AATTTCAAAAATATATATTTGA
72490247 AATT
1 AATT
72490251 ATTTTTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
AATTTCAAAAATATATATTTGA
Found at i:72490306 original size:19 final size:19
Alignment explanation
Indices: 72490272--72490330 Score: 66
Period size: 18 Copynumber: 3.0 Consensus size: 19
72490262 ATTTTAAAAA
72490272 TAAATTTTTGAAATTATTTTT
1 TAAA-TTTT-AAATTATTTTT
*
72490293 TTAATTTTAAATTA-TTTT
1 TAAATTTTAAATTATTTTT
*
72490311 TAAATATTAAATATATTTTT
1 TAAATTTTAAAT-TATTTTT
72490331 AATAATATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
18 14 0.42
19 8 0.24
20 8 0.24
21 3 0.09
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TAAATTTTAAATTATTTTT
Found at i:72490328 original size:29 final size:29
Alignment explanation
Indices: 72490296--72490367 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
72490286 TATTTTTTTA
* * *
72490296 ATTTTAAATTATTTTTAAATA-TTAAATAT
1 ATTTTAAATAATATTTAAACATTTAAA-AT
*
72490325 ATTTTTAATAATATTTAAACATTTAAAAT
1 ATTTTAAATAATATTTAAACATTTAAAAT
72490354 -TTTTAAATAA-ATTT
1 ATTTTAAATAATATTT
72490368 TTTATAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 4 0.11
28 9 0.24
29 19 0.51
30 5 0.14
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (29 bp):
ATTTTAAATAATATTTAAACATTTAAAAT
Found at i:72490331 original size:19 final size:18
Alignment explanation
Indices: 72490282--72490332 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
72490272 TAAATTTTTG
* *
72490282 AAATTATTTTTTTAATTTT
1 AAATTA-TTTTTAAATATT
72490301 AAATTATTTTTAAATATT
1 AAATTATTTTTAAATATT
72490319 AAATATATTTTTAA
1 AAAT-TATTTTTAA
72490333 TAATATTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 14 0.48
19 15 0.52
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
AAATTATTTTTAAATATT
Found at i:72490675 original size:15 final size:15
Alignment explanation
Indices: 72490638--72490686 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
72490628 ATCTTTAAAA
* *
72490638 ATAATTTAAAAT-TC
1 ATAAATTAAAATATT
*
72490652 ATAATTTAAAATATT
1 ATAAATTAAAATATT
*
72490667 ATAAATTAAATTATT
1 ATAAATTAAAATATT
72490682 ATAAA
1 ATAAA
72490687 ACTAATAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
ATAAATTAAAATATT
Found at i:72490762 original size:21 final size:21
Alignment explanation
Indices: 72490729--72490790 Score: 88
Period size: 22 Copynumber: 2.9 Consensus size: 21
72490719 AAATATTTTA
*
72490729 TAATATTAAAAAAATTAATATT
1 TAATATTTAAAAAA-TAATATT
72490751 TAATATTTAAAAAATAATATT
1 TAATATTTAAAAAATAATATT
*
72490772 TAAAATTTAAAAAAATAAT
1 TAATATTT-AAAAAATAAT
72490791 TTCAAAATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.38
22 23 0.62
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TAATATTTAAAAAATAATATT
Found at i:72490797 original size:21 final size:22
Alignment explanation
Indices: 72490720--72490798 Score: 90
Period size: 21 Copynumber: 3.5 Consensus size: 22
72490710 AAAATATTTA
*
72490720 AATATTTTATAATATTAAAAAAATT
1 AATA-TTTAAAAT-TTAAAAAAA-T
*
72490745 AATATTTAATATTT-AAAAAAT
1 AATATTTAAAATTTAAAAAAAT
72490766 AATATTTAAAATTTAAAAAAAT
1 AATATTTAAAATTTAAAAAAAT
*
72490788 AAT-TTCAAAAT
1 AATATTTAAAAT
72490799 ATATATTTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
21 21 0.43
22 16 0.33
23 2 0.04
24 6 0.12
25 4 0.08
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (22 bp):
AATATTTAAAATTTAAAAAAAT
Found at i:72490868 original size:23 final size:22
Alignment explanation
Indices: 72490794--72490868 Score: 78
Period size: 23 Copynumber: 3.2 Consensus size: 22
72490784 AAATAATTTC
**
72490794 AAAATATATATTTAAAATTTAAA
1 AAAATATATATTTAAAATTT-TT
*
72490817 AAAATATATATTAATAAAATATTT
1 AAAATATATATT--TAAAATTTTT
*
72490841 CAAATATATATTTCAAAATTTTT
1 AAAATATATATTT-AAAATTTTT
72490864 AAAAT
1 AAAAT
72490869 TAATAATAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
22 1 0.02
23 24 0.56
24 11 0.26
25 7 0.16
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATATATATTTAAAATTTTT
Found at i:72490868 original size:47 final size:49
Alignment explanation
Indices: 72490778--72490881 Score: 126
Period size: 47 Copynumber: 2.2 Consensus size: 49
72490768 TATTTAAAAT
*
72490778 TTAAAAAAATAATTTCAAAATATATATTTAAAATTTAAAAAAA-TATATA
1 TTAATAAAATAATTTCAAAATATATATTTAAAATTTAAAAAAATTA-ATA
**
72490827 TTAATAAAAT-ATTTC-AAATATATATTTCAAAATTT-TTAAAATTAATA
1 TTAATAAAATAATTTCAAAATATATATTT-AAAATTTAAAAAAATTAATA
*
72490874 ATAATAAA
1 TTAATAAA
72490882 TAAATTAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
47 26 0.53
48 14 0.29
49 9 0.18
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (49 bp):
TTAATAAAATAATTTCAAAATATATATTTAAAATTTAAAAAAATTAATA
Found at i:72490888 original size:18 final size:18
Alignment explanation
Indices: 72490865--72490908 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
72490855 AAAATTTTTA
72490865 AAATTAATAAT-AATAAAT
1 AAATTAA-AATAAATAAAT
*
72490883 AAATTAAATTAAATAAAT
1 AAATTAAAATAAATAAAT
*
72490901 AAAATAAA
1 AAATTAAA
72490909 GAAAGAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATTAAAATAAATAAAT
Found at i:72490929 original size:8 final size:8
Alignment explanation
Indices: 72490918--72490963 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
72490908 AGAAAGAAAG
72490918 AAAAGTAAA
1 AAAAGT-AA
*
72490927 AAAAGTAC
1 AAAAGTAA
72490935 AAAAGTCAA
1 AAAAGT-AA
*
72490944 AAAAATAA
1 AAAAGTAA
72490952 AAAAGTAA
1 AAAAGTAA
72490960 AAAA
1 AAAA
72490964 AAAAAACTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
8 20 0.62
9 12 0.38
ACGTcount: A:0.76, C:0.04, G:0.09, T:0.11
Consensus pattern (8 bp):
AAAAGTAA
Found at i:72490932 original size:9 final size:9
Alignment explanation
Indices: 72490896--72490964 Score: 58
Period size: 9 Copynumber: 7.9 Consensus size: 9
72490886 TTAAATTAAA
72490896 TAAATAAAA-
1 TAAA-AAAAG
*
72490905 TAAAGAAAG
1 TAAAAAAAG
72490914 -AAAGAAAAG
1 TAAA-AAAAG
72490923 TAAAAAAAG
1 TAAAAAAAG
*
72490932 T-ACAAAAG
1 TAAAAAAAG
72490940 TCAAAAAAA-
1 T-AAAAAAAG
72490949 T-AAAAAAG
1 TAAAAAAAG
72490957 TAAAAAAA
1 TAAAAAAA
72490965 AAAAACTGAC
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
7 6 0.12
8 14 0.29
9 21 0.43
10 8 0.16
ACGTcount: A:0.75, C:0.03, G:0.10, T:0.12
Consensus pattern (9 bp):
TAAAAAAAG
Found at i:72490938 original size:17 final size:16
Alignment explanation
Indices: 72490918--72490969 Score: 70
Period size: 17 Copynumber: 3.2 Consensus size: 16
72490908 AGAAAGAAAG
*
72490918 AAAAGTAAAAAAAGTAC
1 AAAAGTAAAAAAA-TAA
72490935 AAAAGTCAAAAAAATAA
1 AAAAGT-AAAAAAATAA
72490952 AAAAGTAAAAAAA-AA
1 AAAAGTAAAAAAATAA
72490967 AAA
1 AAA
72490970 CTGACATGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
15 5 0.15
16 7 0.21
17 14 0.42
18 7 0.21
ACGTcount: A:0.79, C:0.04, G:0.08, T:0.10
Consensus pattern (16 bp):
AAAAGTAAAAAAATAA
Found at i:72490969 original size:8 final size:8
Alignment explanation
Indices: 72490893--72490969 Score: 57
Period size: 9 Copynumber: 9.1 Consensus size: 8
72490883 AAATTAAATT
72490893 AAATAAATA
1 AAATAAA-A
*
72490902 AAATAAAG
1 AAATAAAA
*
72490910 AAAGAAAGA
1 AAATAAA-A
72490919 AAAGTAAAA
1 AAA-TAAAA
*
72490928 AAAGTACAA
1 AAA-TAAAA
*
72490937 AAGTCAAAA
1 AAAT-AAAA
72490946 AAATAAAA
1 AAATAAAA
*
72490954 AAGTAAAA
1 AAATAAAA
72490962 AAA-AAAA
1 AAATAAAA
72490969 A
1 A
72490970 CTGACATGGC
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
7 5 0.09
8 20 0.36
9 27 0.49
10 3 0.05
ACGTcount: A:0.78, C:0.03, G:0.09, T:0.10
Consensus pattern (8 bp):
AAATAAAA
Found at i:72495530 original size:15 final size:15
Alignment explanation
Indices: 72495502--72495540 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
72495492 AGCTAATCTT
*
72495502 AACTTTTTTTAAAAA
1 AACTATTTTTAAAAA
*
72495517 TA-TATTTTTAAAAA
1 AACTATTTTTAAAAA
72495531 AACTATTTTT
1 AACTATTTTT
72495541 TAATTATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (15 bp):
AACTATTTTTAAAAA
Found at i:72496260 original size:77 final size:77
Alignment explanation
Indices: 72496121--72496269 Score: 185
Period size: 77 Copynumber: 1.9 Consensus size: 77
72496111 TCCCAATGCG
* * *
72496121 AATAAAATAATTTTCATTATTTTATCAATGAAGTTATTTAGATGATGTTTGTTCGAATATGAAGT
1 AATAAAATAATTTTCATTATTTTATCAATGAAGTTATTTAAATGATGTTTATTCGAAAATGAAGT
72496186 GTTGAATGCGAT
66 GTTGAATGCGAT
* ** * *
72496198 AATAAAATAATTTTCATT-TTTTTTCTAGATGGTGTTATTTAAATGTTGTTTATT-TAAAATGAA
1 AATAAAATAATTTTCATTATTTTATC-A-ATGAAGTTATTTAAATGATGTTTATTCGAAAATGAA
*
72496261 TTGTTGAAT
64 GTGTTGAAT
72496270 AATATTTATA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
76 6 0.10
77 34 0.56
78 21 0.34
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (77 bp):
AATAAAATAATTTTCATTATTTTATCAATGAAGTTATTTAAATGATGTTTATTCGAAAATGAAGT
GTTGAATGCGAT
Found at i:72496994 original size:17 final size:17
Alignment explanation
Indices: 72496947--72496995 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
72496937 TATACTAGTT
*
72496947 AAAAAAAAAGCTAAAAA
1 AAAAAAAAAGCTGAAAA
**
72496964 AAAAACAAAAGCTGGCAA
1 AAAAA-AAAAGCTGAAAA
72496982 AAAAAAAAAGCTGA
1 AAAAAAAAAGCTGA
72496996 CAGATCAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.71, C:0.10, G:0.12, T:0.06
Consensus pattern (17 bp):
AAAAAAAAAGCTGAAAA
Found at i:72497182 original size:26 final size:26
Alignment explanation
Indices: 72497152--72497210 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
72497142 AAGAAGTAGC
72497152 AAGGAGAAGA-AGAGAAAAAGAAAGAA
1 AAGGAGAAGAGA-AGAAAAAGAAAGAA
* * *
72497178 AAGGAGAAGAGAAGAAGAAGAAGGAG
1 AAGGAGAAGAGAAGAAAAAGAAAGAA
72497204 AAGGAGA
1 AAGGAGA
72497211 GGGCACGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (26 bp):
AAGGAGAAGAGAAGAAAAAGAAAGAA
Found at i:72497273 original size:14 final size:13
Alignment explanation
Indices: 72497238--72497283 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
72497228 GGGAAAAAAA
*
72497238 AAAGA-AAAAGAG
1 AAAGAGAAAGGAG
*
72497250 AAGGAG-AAGGAG
1 AAAGAGAAAGGAG
72497262 AATAGAGAAAGGAG
1 AA-AGAGAAAGGAG
72497276 AAAGAGAA
1 AAAGAGAA
72497284 GGAAAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 11 0.39
13 9 0.32
14 8 0.29
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (13 bp):
AAAGAGAAAGGAG
Found at i:72497273 original size:20 final size:19
Alignment explanation
Indices: 72497246--72497283 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
72497236 AAAAAGAAAA
*
72497246 AGAGAAGGAGAAGGAGAAT
1 AGAGAAGGAGAAAGAGAAT
72497265 AGAGAAAGGAGAAAGAGAA
1 AGAG-AAGGAGAAAGAGAA
72497284 GGAAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03
Consensus pattern (19 bp):
AGAGAAGGAGAAAGAGAAT
Found at i:72497379 original size:13 final size:12
Alignment explanation
Indices: 72497357--72497418 Score: 65
Period size: 13 Copynumber: 5.1 Consensus size: 12
72497347 GTGTTTTTTC
72497357 TGTTATTATTAT
1 TGTTATTATTAT
72497369 TGTTGATTATTAT
1 TGTT-ATTATTAT
*
72497382 TGTT-TT-TTGT
1 TGTTATTATTAT
*
72497392 TGCTAGTTATTAT
1 TGTTA-TTATTAT
72497405 TGTTAGTTATTAT
1 TGTTA-TTATTAT
72497418 T
1 T
72497419 ATTGTTAGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
10 6 0.14
11 2 0.05
12 6 0.14
13 28 0.67
ACGTcount: A:0.19, C:0.02, G:0.15, T:0.65
Consensus pattern (12 bp):
TGTTATTATTAT
Found at i:72497393 original size:20 final size:22
Alignment explanation
Indices: 72497368--72497408 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
72497358 GTTATTATTA
72497368 TTGTTG-A-TTATTATTGTTTT
1 TTGTTGCAGTTATTATTGTTTT
72497388 TTGTTGCTAGTTATTATTGTT
1 TTGTTGC-AGTTATTATTGTT
72497409 AGTTATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.15, C:0.02, G:0.17, T:0.66
Consensus pattern (22 bp):
TTGTTGCAGTTATTATTGTTTT
Found at i:72497417 original size:39 final size:35
Alignment explanation
Indices: 72497337--72497424 Score: 104
Period size: 39 Copynumber: 2.4 Consensus size: 35
72497327 TGAATTTTTA
* *
72497337 TATTGTTATTGTGTTTTTTCTGTTATTATTATTGT
1 TATTATTATTGTTTTTTTTCTGTTATTATTATTGT
*
72497372 TGATTATTATTGTTTTTTGTTGCTAGTTATTATTGTTAGT
1 T-ATTATTATTGTTTTTT-TT-CT-GTTATTATTATT-GT
72497412 TATTATTATTGTT
1 TATTATTATTGTT
72497425 AGTAAAAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
35 1 0.02
36 14 0.31
37 2 0.04
38 2 0.04
39 23 0.51
40 3 0.07
ACGTcount: A:0.17, C:0.02, G:0.15, T:0.66
Consensus pattern (35 bp):
TATTATTATTGTTTTTTTTCTGTTATTATTATTGT
Found at i:72497425 original size:16 final size:16
Alignment explanation
Indices: 72497358--72497427 Score: 61
Period size: 16 Copynumber: 4.1 Consensus size: 16
72497348 TGTTTTTTCT
72497358 GTTATTATTATTGTT-
1 GTTATTATTATTGTTA
* * *
72497373 GATTATTATTGTTTTTT
1 G-TTATTATTATTGTTA
72497390 GTTGCTAGTTATTATTGTTA
1 G-T--TA-TTATTATTGTTA
72497410 GTTATTATTATTGTTA
1 GTTATTATTATTGTTA
72497426 GT
1 GT
72497428 AAAAAACCTT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
15 1 0.02
16 26 0.59
17 4 0.09
19 3 0.07
20 10 0.23
ACGTcount: A:0.20, C:0.01, G:0.16, T:0.63
Consensus pattern (16 bp):
GTTATTATTATTGTTA
Found at i:72497439 original size:19 final size:19
Alignment explanation
Indices: 72497417--72497479 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
72497407 TTAGTTATTA
72497417 TTATTGTTAGTAAAAAACC
1 TTATTGTTAGTAAAAAACC
* **
72497436 TTATTGTTATTGTTAATTA--
1 TTATTGTTA--GTAAAAAACC
72497455 TTATTGTTAGTAAAAAACCC
1 TTATTGTTAGTAAAAAA-CC
72497475 TTATT
1 TTATT
72497480 ATTATTGTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 9
0.69 0.12 0.19
Matches are distributed among these distances:
17 5 0.15
19 18 0.55
20 5 0.15
21 5 0.15
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.48
Consensus pattern (19 bp):
TTATTGTTAGTAAAAAACC
Found at i:72497496 original size:13 final size:13
Alignment explanation
Indices: 72497478--72497520 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
72497468 AAAACCCTTA
72497478 TTATTATTGTTAG
1 TTATTATTGTTAG
*
72497491 TTATTATTATTGTTGG
1 ---TTATTATTGTTAG
72497507 TTATTATTGTTAG
1 TTATTATTGTTAG
72497520 T
1 T
72497521 AAAAAACCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 13 0.52
16 12 0.48
ACGTcount: A:0.21, C:0.00, G:0.16, T:0.63
Consensus pattern (13 bp):
TTATTATTGTTAG
Found at i:72497496 original size:16 final size:16
Alignment explanation
Indices: 72497475--72497514 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
72497465 TAAAAAACCC
72497475 TTATTATTATTGTTAG
1 TTATTATTATTGTTAG
*
72497491 TTATTATTATTGTTGG
1 TTATTATTATTGTTAG
72497507 TTATTATT
1 TTATTATT
72497515 GTTAGTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (16 bp):
TTATTATTATTGTTAG
Found at i:72497537 original size:52 final size:54
Alignment explanation
Indices: 72497436--72497553 Score: 186
Period size: 55 Copynumber: 2.2 Consensus size: 54
72497426 GTAAAAAACC
*
72497436 TTATTGTTATTGTTAATTATTATTGTTAGTAAAAAACCCTTATTATTATTGTTAG
1 TTATTATTATTGTTAATTATTATTGTTAGTAAAAAACCCTTA-TATTATTGTTAG
**
72497491 TTATTATTATTGTTGGTTATTATTGTTAGTAAAAAACCC-TA-ATTATTGTTAG
1 TTATTATTATTGTTAATTATTATTGTTAGTAAAAAACCCTTATATTATTGTTAG
72497543 TTATTATTATT
1 TTATTATTATT
72497554 TTTTATTTAT
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
52 22 0.37
54 2 0.03
55 36 0.60
ACGTcount: A:0.31, C:0.05, G:0.11, T:0.53
Consensus pattern (54 bp):
TTATTATTATTGTTAATTATTATTGTTAGTAAAAAACCCTTATATTATTGTTAG
Found at i:72501786 original size:24 final size:24
Alignment explanation
Indices: 72501759--72501810 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
72501749 GTATGCGATT
* * *
72501759 GCTCAAGCTCTGGTTGTGGCTCGG
1 GCTCAAGCTCAGGATCTGGCTCGG
* *
72501783 GCTCCAGCTCAGGATCTGGCTCTG
1 GCTCAAGCTCAGGATCTGGCTCGG
72501807 GCTC
1 GCTC
72501811 TGGCTCGACC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.31, G:0.33, T:0.27
Consensus pattern (24 bp):
GCTCAAGCTCAGGATCTGGCTCGG
Found at i:72503613 original size:33 final size:33
Alignment explanation
Indices: 72503509--72503617 Score: 152
Period size: 33 Copynumber: 3.4 Consensus size: 33
72503499 TTTCCCTAAA
72503509 ATAAAT-TATTATTTTGATATTTTA-TTTTTTT
1 ATAAATATATTATTTTGATATTTTATTTTTTTT
* * * *
72503540 ATAAAGATACTATTTTGGTATTTTATTTTTTTC
1 ATAAATATATTATTTTGATATTTTATTTTTTTT
72503573 ATAAATATATTATTTTGATATTTTATTATTTTTT
1 ATAAATATATTATTTTGATATTTTATT-TTTTTT
72503607 AT-AATATATTA
1 ATAAATATATTA
72503618 GTAAAAAACC
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
31 5 0.07
32 16 0.24
33 39 0.58
34 7 0.10
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (33 bp):
ATAAATATATTATTTTGATATTTTATTTTTTTT
Done.