Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 230 of 325
Found at i:72503616 original size:17 final size:17
Alignment explanation
Indices: 72503566--72503617 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
72503556 GGTATTTTAT
72503566 TTTTTTCATAAATATATTA
1 TTTTTT-AT-AATATATTA
* * *
72503585 -TTTTGATATTTTATTA
1 TTTTTTATAATATATTA
72503601 TTTTTTATAATATATTA
1 TTTTTTATAATATATTA
72503618 GTAAAAAACC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
16 7 0.27
17 15 0.58
18 4 0.15
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (17 bp):
TTTTTTATAATATATTA
Found at i:72503663 original size:3 final size:3
Alignment explanation
Indices: 72503657--72503703 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
72503647 AAAGGAATCT
* *
72503657 TTA TTA TTA TTA TTA TTA TTA TTA TTA -AA ATA TTA TT- TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
72503702 TT
1 TT
72503704 TCCTATCCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
2 5 0.13
3 33 0.87
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:72503944 original size:35 final size:35
Alignment explanation
Indices: 72503869--72503946 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 35
72503859 AAATTATTCC
* * *
72503869 TAAA-AATTAATAATTTAATTATTTTATAAATATG
1 TAAATAATTAATAAATTAATAATTTAATAAATATG
*
72503903 TAAATAATTAATAAAATTAATAATTTAAT-AATTTG
1 TAAATAATTAAT-AAATTAATAATTTAATAAATATG
*
72503938 TTAATAATT
1 TAAATAATT
72503947 TGTATACAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
34 4 0.11
35 20 0.54
36 13 0.35
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (35 bp):
TAAATAATTAATAAATTAATAATTTAATAAATATG
Found at i:72504216 original size:22 final size:18
Alignment explanation
Indices: 72504163--72504236 Score: 51
Period size: 18 Copynumber: 3.8 Consensus size: 18
72504153 ATTTTCTCTA
72504163 TTCT-CTTCTCTTTCTCC
1 TTCTCCTTCTCTTTCTCC
72504180 TTCTCCTTCCTTCTTTCTCTC
1 TTCTCCTT-C-TCTTTCTC-C
* *
72504201 TAACTCTCCTTCTCTTTTTCT
1 T---TCTCCTTCTCTTTCTCC
* *
72504222 TTCTTCTTCTTTTTC
1 TTCTCCTTCTCTTTC
72504237 CCTCACCAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
17 4 0.09
18 14 0.31
19 1 0.02
20 8 0.18
21 3 0.07
22 7 0.16
23 1 0.02
24 7 0.16
ACGTcount: A:0.03, C:0.36, G:0.00, T:0.61
Consensus pattern (18 bp):
TTCTCCTTCTCTTTCTCC
Found at i:72506551 original size:9 final size:9
Alignment explanation
Indices: 72506532--72506572 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
72506522 TTTATACAAA
*
72506532 TAATTTGGT
1 TAATTCGGT
*
72506541 TAATTCAGT
1 TAATTCGGT
*
72506550 TAATTCGGG
1 TAATTCGGT
72506559 TAATTCGGT
1 TAATTCGGT
72506568 TAATT
1 TAATT
72506573 TAATACTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:72507303 original size:31 final size:31
Alignment explanation
Indices: 72507266--72507324 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
72507256 TTCATCTAGG
*
72507266 TAAGCCTTGTTTTTCTTCCATTCTTCAACTT
1 TAAGCCTTCTTTTTCTTCCATTCTTCAACTT
72507297 TAAGCCTTCTTTTTCTTCCATTCTTCAA
1 TAAGCCTTCTTTTTCTTCCATTCTTCAA
72507325 TTTTTTCCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.17, C:0.27, G:0.05, T:0.51
Consensus pattern (31 bp):
TAAGCCTTCTTTTTCTTCCATTCTTCAACTT
Found at i:72511382 original size:18 final size:18
Alignment explanation
Indices: 72511359--72511419 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
72511349 CACTTTTAAA
72511359 ATGTAAATTTATTAATAT
1 ATGTAAATTTATTAATAT
* *
72511377 ATGTAAAAATAATTGAA-A-
1 ATGT-AAATTTATT-AATAT
*
72511395 ATATAAATTTATTAATAT
1 ATGTAAATTTATTAATAT
*
72511413 ATTTAAA
1 ATGTAAA
72511420 AACAACTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 2 0.06
17 8 0.24
18 13 0.39
19 8 0.24
20 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (18 bp):
ATGTAAATTTATTAATAT
Found at i:72513117 original size:41 final size:41
Alignment explanation
Indices: 72512973--72513125 Score: 209
Period size: 41 Copynumber: 3.7 Consensus size: 41
72512963 TTGAGTTTAC
72512973 GTGTAAGACCATATCTGGGATATGGCATCGATATGAACTTT
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAACTTT
* * * **
72513014 GTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAGAGC-CC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGA-A-CTTT
* *
72513057 ATGTAAGACCATATTTGGGATATGGCATCGATATGAACTTT
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAACTTT
72513098 GTGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
72513126 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 1 0.01
41 46 0.49
42 28 0.30
43 18 0.19
44 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAACTTT
Found at i:72516715 original size:33 final size:33
Alignment explanation
Indices: 72516673--72516738 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
72516663 AAAAGACTCA
72516673 GTCTCACCAACATCATCTTGATAAATATATACC
1 GTCTCACCAACATCATCTTGATAAATATATACC
72516706 GTCTCACCAACATCATCTTGATAAATATATACC
1 GTCTCACCAACATCATCTTGATAAATATATACC
72516739 CCTGACCACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.30
Consensus pattern (33 bp):
GTCTCACCAACATCATCTTGATAAATATATACC
Found at i:72518574 original size:179 final size:178
Alignment explanation
Indices: 72518285--72518609 Score: 435
Period size: 179 Copynumber: 1.8 Consensus size: 178
72518275 ATTTGTAGTG
**
72518285 ATTTCATACAAGATGGATTATTGCCTCTTTTTCCAATAGAACAGATATGAATTACCTTAACAATT
1 ATTTCATACAAGATGGATTATTAACTCTTTTTCCAATAGAACAGATATGAATTACCTTAACAATT
* *
72518350 ATTTTCATTACGAATTAACATATGACATATTGATTCTAGAAAACTCACGCATAAAGATTCACACT
66 ATTTTCATTACGAATTAACATATGACAGATTGATTCTAAAAAACTCACGCATAAAGATT--CACT
72518415 TGGAGAATTTTTT-TACAAGCGAAATGATTTCGTTTACCTATTTGCACTA
129 TGGAGAATTTTTTGTACAAGCGAAATGATTTCGTTTACCTATTTGCACTA
**
72518464 ATTTCATACAAGATGGATTATTAACTCTTTTTCCAATAGAACAG-T-TGCAAATTACCTTAGTAA
1 ATTTCATACAAGATGGATTATTAACTCTTTTTCCAATAGAACAGATATG--AATTACCTTAACAA
* * * ** * * *
72518527 TTGTTTTCATTGCGGATTAATGTAATGA-AGATTGGTT-TCAAAAAACTCATGCATAGAGATTCA
64 TTATTTTCATTACGAATTAACAT-ATGACAGATTGATTCT-AAAAAACTCACGCATAAAGATTCA
72518590 CTTGGAGAATTTTTTGTACA
127 CTTGGAGAATTTTTTGTACA
72518610 TTTAGATTTA
Statistics
Matches: 127, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
177 19 0.15
178 6 0.05
179 98 0.77
180 4 0.03
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (178 bp):
ATTTCATACAAGATGGATTATTAACTCTTTTTCCAATAGAACAGATATGAATTACCTTAACAATT
ATTTTCATTACGAATTAACATATGACAGATTGATTCTAAAAAACTCACGCATAAAGATTCACTTG
GAGAATTTTTTGTACAAGCGAAATGATTTCGTTTACCTATTTGCACTA
Found at i:72518787 original size:29 final size:29
Alignment explanation
Indices: 72518755--72518822 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
72518745 ATTCTTAAAT
*
72518755 GATAGTCACTACCAAACTCTTGTTTGGCA-
1 GATAGTCACTACCAAACTCTTGTTTAG-AG
* * *
72518784 GATAGTTACTATCAGACTCTTGTTTAGAG
1 GATAGTCACTACCAAACTCTTGTTTAGAG
72518813 GATAGTCACT
1 GATAGTCACT
72518823 GCGAACTCTC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 1 0.03
29 32 0.97
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (29 bp):
GATAGTCACTACCAAACTCTTGTTTAGAG
Found at i:72520152 original size:48 final size:48
Alignment explanation
Indices: 72520081--72520176 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
72520071 TATGCACAGA
72520081 GTTAAACTCCTTGAATTTCGAGGGGGAAACCTACGAACTCAGTTGGTG
1 GTTAAACTCCTTGAATTTCGAGGGGGAAACCTACGAACTCAGTTGGTG
* * *
72520129 GTTAATCTCTTTGAATTTCGAGGGGGAAATCTACGAACTCAGTTGGTG
1 GTTAAACTCCTTGAATTTCGAGGGGGAAACCTACGAACTCAGTTGGTG
72520177 TAGCCAATGC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (48 bp):
GTTAAACTCCTTGAATTTCGAGGGGGAAACCTACGAACTCAGTTGGTG
Found at i:72521287 original size:135 final size:132
Alignment explanation
Indices: 72521093--72521432 Score: 346
Period size: 135 Copynumber: 2.5 Consensus size: 132
72521083 TACATGTAAC
* * * * * *
72521093 CCCATGTTTAATGTCCTAGCAA-ACTCTATTGGTTTTTATAGTTGGGTTATGGTCTTACACCATG
1 CCCATGTTTAATGTCCTA--AAGACTCTATTAGTTGTCATAG-TGAGCTATGGTCTTACACCTTG
* * * *
72521157 TAACCCCATATTTAATGTCTTGGTGGACTCTT-TTGGTGT-TATAGTCGTGCTATCATCTTACA-
63 TAACCCCATATTTAATGTCCTGGCGGACT-TTATTGGT-TACATAGTCGGGCTATCATCTTACAT
72521219 CTTTATAA
126 C-TTATAA
72521227 GCCCATGTTTAATGTCCTAAAGGACTCTATTAGTTGTCATAGCTGAGCTATGGTCTTACACCTTG
1 -CCCATGTTTAATGTCCTAAA-GACTCTATTAGTTGTCATAG-TGAGCTATGGTCTTACACCTTG
* ** * **
72521292 CAACCTTATGTTTAATGTCCTGGCGGACTTTATTGGTTACCATAGTCGGGCTATGGTCTTACATC
63 TAACCCCATATTTAATGTCCTGGCGGACTTTATTGGTTA-CATAGTCGGGCTATCATCTTACATC
*
72521357 TTGTAA
127 TTATAA
* * * * *
72521363 CCCATGTTTAATATCCTAACAGAATCTATTATTTGTCAAAGTCGAGCTATGGTATTACACCTTGT
1 CCCATGTTTAATGTCCTAA-AGACTCTATTAGTTGTCATAGT-GAGCTATGGTCTTACACCTTGT
72521428 AACCC
64 AACCC
72521433 TTTTTAAGGC
Statistics
Matches: 172, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
133 2 0.01
134 4 0.02
135 140 0.81
136 25 0.15
137 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (132 bp):
CCCATGTTTAATGTCCTAAAGACTCTATTAGTTGTCATAGTGAGCTATGGTCTTACACCTTGTAA
CCCCATATTTAATGTCCTGGCGGACTTTATTGGTTACATAGTCGGGCTATCATCTTACATCTTAT
AA
Found at i:72521406 original size:67 final size:67
Alignment explanation
Indices: 72521059--72521432 Score: 279
Period size: 67 Copynumber: 5.6 Consensus size: 67
72521049 CTCCATATGC
* * * * * *
72521059 TGTCATAGTCAAGCTATAGTCTTATA-CATGTAACCCCATGTTTAATGTCCTAGCAAACTCTATT
1 TGTCATAGTCGAGCTATGGTCTTACACCTTGTAA-CCCATGTTTAATGTCCTAACAGACTCTATT
*
72521123 GGT
65 AGT
* * * * * * * * ****
72521126 TTTTATAGTTGGGTTATGGTCTTACACCATGTAACCCCATATTTAATGTCTTGGTGGACTCT-TT
1 TGTCATAGTCGAGCTATGGTCTTACACCTTGTAA-CCCATGTTTAATGTCCTAACAGACTCTATT
* *
72521190 TGG
65 AGT
* * ** * *
72521193 TGTTATAGTCGTGCTATCATCTTACACTTTATAAGCCCATGTTTAATGTCCTAA-AGGACTCTAT
1 TGTCATAGTCGAGCTATGGTCTTACACCTTGTAA-CCCATGTTTAATGTCCTAACA-GACTCTAT
72521257 TAGT
64 TAGT
* * ** * *
72521261 TGTCATAG-CTGAGCTATGGTCTTACACCTTGCAACCTTATGTTTAATGTCCTGGCGGACTTTAT
1 TGTCATAGTC-GAGCTATGGTCTTACACCTTGTAACC-CATGTTTAATGTCCTAACAGACTCTAT
*
72521325 TGGT
64 TAGT
** * * * *
72521329 TACCATAGTCGGGCTATGGTCTTACATCTTGTAACCCATGTTTAATATCCTAACAGAATCTATTA
1 TGTCATAGTCGAGCTATGGTCTTACACCTTGTAACCCATGTTTAATGTCCTAACAGACTCTATTA
*
72521394 TT
66 GT
* *
72521396 TGTCAAAGTCGAGCTATGGTATTACACCTTGTAACCC
1 TGTCATAGTCGAGCTATGGTCTTACACCTTGTAACCC
72521433 TTTTTAAGGC
Statistics
Matches: 234, Mismatches: 66, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
67 123 0.53
68 110 0.47
69 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (67 bp):
TGTCATAGTCGAGCTATGGTCTTACACCTTGTAACCCATGTTTAATGTCCTAACAGACTCTATTA
GT
Found at i:72525265 original size:19 final size:20
Alignment explanation
Indices: 72525227--72525267 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
72525217 AGTGACAAGT
* *
72525227 ATGTGGTAATAGTGAAATAC
1 ATGTGGTAATAATAAAATAC
72525247 ATGTGGTAA-AATAAAATAC
1 ATGTGGTAATAATAAAATAC
72525266 AT
1 AT
72525268 ATATTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.46, C:0.05, G:0.20, T:0.29
Consensus pattern (20 bp):
ATGTGGTAATAATAAAATAC
Found at i:72525277 original size:19 final size:19
Alignment explanation
Indices: 72525255--72525293 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
72525245 ACATGTGGTA
72525255 AAATAA-AATACATATATTT
1 AAATAATAATA-ATATATTT
*
72525274 AAATAATAATAATCTATTT
1 AAATAATAATAATATATTT
72525293 A
1 A
72525294 CTTATTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATAATAATAATATATTT
Found at i:72525323 original size:5 final size:5
Alignment explanation
Indices: 72525313--72525358 Score: 55
Period size: 5 Copynumber: 10.0 Consensus size: 5
72525303 TAAGTAAATG
*
72525313 TTATA TTATA -T-TA TTATA TTATA TTATA TTA-A -TACA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
72525359 ATAAAAGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
3 4 0.11
4 4 0.11
5 28 0.78
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (5 bp):
TTATA
Found at i:72525331 original size:13 final size:13
Alignment explanation
Indices: 72525313--72525339 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72525303 TAAGTAAATG
72525313 TTATATTATATTA
1 TTATATTATATTA
72525326 TTATATTATATTA
1 TTATATTATATTA
72525339 T
1 T
72525340 ATTAATACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATATTATATTA
Found at i:72525334 original size:18 final size:18
Alignment explanation
Indices: 72525313--72525358 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
72525303 TAAGTAAATG
* *
72525313 TTATATTATATTATTATA
1 TTATATTATATTAATACA
72525331 TTATATTATATTAATACA
1 TTATATTATATTAATACA
72525349 TTATATTATA
1 TTATATTATA
72525359 ATAAAAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TTATATTATATTAATACA
Found at i:72525369 original size:23 final size:23
Alignment explanation
Indices: 72525325--72525369 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
72525315 ATATTATATT
* * **
72525325 ATTATATTATATTATATTAATAC
1 ATTATATTATAATAAAAGAATAC
72525348 ATTATATTATAATAAAAGAATA
1 ATTATATTATAATAAAAGAATA
72525370 AAACAAATAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
ATTATATTATAATAAAAGAATAC
Found at i:72525406 original size:19 final size:18
Alignment explanation
Indices: 72525369--72525407 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
72525359 ATAAAAGAAT
* *
72525369 AAAACAAATAAATGAAAC
1 AAAACAAAAAAAAGAAAC
72525387 AAAACAAAAAGAAAGAAAC
1 AAAACAAAAA-AAAGAAAC
72525406 AA
1 AA
72525408 GAAAAGAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.77, C:0.10, G:0.08, T:0.05
Consensus pattern (18 bp):
AAAACAAAAAAAAGAAAC
Found at i:72535794 original size:27 final size:28
Alignment explanation
Indices: 72535710--72535807 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
72535700 CATGAGATTG
* * * *
72535710 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
72535739 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72535767 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72535794 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
72535808 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72535818 original size:27 final size:27
Alignment explanation
Indices: 72535738--72535820 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
72535728 TAAATTGTAC
* *
72535738 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
72535766 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
72535793 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
72535820 A
1 A
72535821 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:72535821 original size:29 final size:27
Alignment explanation
Indices: 72535710--72535821 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
72535700 CATGAGATTG
** * *
72535710 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
72535739 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
72535767 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
72535794 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
72535822 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:72537512 original size:22 final size:21
Alignment explanation
Indices: 72537485--72537533 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
72537475 TGTGAAAATA
*
72537485 TATTTAATTTC-TACATTCAAT
1 TATTTAATTTCGAAC-TTCAAT
72537506 TAATTTAATTTCGAACTTCAAT
1 T-ATTTAATTTCGAACTTCAAT
72537528 TATTTA
1 TATTTA
72537534 TTTAAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 6 0.24
22 17 0.68
23 2 0.08
ACGTcount: A:0.35, C:0.12, G:0.02, T:0.51
Consensus pattern (21 bp):
TATTTAATTTCGAACTTCAAT
Found at i:72541953 original size:15 final size:15
Alignment explanation
Indices: 72541933--72541962 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
72541923 GATCATTTCC
72541933 CCGTGCCAACATGTT
1 CCGTGCCAACATGTT
72541948 CCGTGCCAACATGTT
1 CCGTGCCAACATGTT
72541963 TGCTCATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (15 bp):
CCGTGCCAACATGTT
Found at i:72548513 original size:18 final size:18
Alignment explanation
Indices: 72548490--72548590 Score: 125
Period size: 18 Copynumber: 5.6 Consensus size: 18
72548480 GCAGAGAACC
*
72548490 ATTTTGACTAGCATGACA
1 ATTTTGACCAGCATGACA
*
72548508 ATTTTGACCAGCATTG-TA
1 ATTTTGACCAGCA-TGACA
72548526 ATTTTGACCAGCATGACA
1 ATTTTGACCAGCATGACA
* *
72548544 ATTTTGACCAGCATTATA
1 ATTTTGACCAGCATGACA
*
72548562 ATTTTGACCAGCATTG-TA
1 ATTTTGACCAGCA-TGACA
72548580 ATTTTGACCAG
1 ATTTTGACCAG
72548591 TAGTGTAATT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 2 0.03
18 69 0.93
19 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.36
Consensus pattern (18 bp):
ATTTTGACCAGCATGACA
Found at i:72548539 original size:36 final size:36
Alignment explanation
Indices: 72548490--72548605 Score: 171
Period size: 36 Copynumber: 3.2 Consensus size: 36
72548480 GCAGAGAACC
*
72548490 ATTTTGACTAGCATGACAATTTTGACCAGCATTGTA
1 ATTTTGACCAGCATGACAATTTTGACCAGCATTGTA
*
72548526 ATTTTGACCAGCATGACAATTTTGACCAGCATTATA
1 ATTTTGACCAGCATGACAATTTTGACCAGCATTGTA
* * *
72548562 ATTTTGACCAGCATTG-TAATTTTGACCAGTAGTGTA
1 ATTTTGACCAGCA-TGACAATTTTGACCAGCATTGTA
72548598 ATTTTGAC
1 ATTTTGAC
72548606 TAGAATTATA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
36 71 0.97
37 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (36 bp):
ATTTTGACCAGCATGACAATTTTGACCAGCATTGTA
Found at i:72548572 original size:54 final size:54
Alignment explanation
Indices: 72548490--72548616 Score: 184
Period size: 54 Copynumber: 2.4 Consensus size: 54
72548480 GCAGAGAACC
* *
72548490 ATTTTGACTAGCATGACAATTTTGACCAGCATTGTAATTTTGACCAGCA-TGACA
1 ATTTTGACTAGCATTATAATTTTGACCAGCATTGTAATTTTGACCAGCAGTG-CA
* * *
72548544 ATTTTGACCAGCATTATAATTTTGACCAGCATTGTAATTTTGACCAGTAGTGTA
1 ATTTTGACTAGCATTATAATTTTGACCAGCATTGTAATTTTGACCAGCAGTGCA
*
72548598 ATTTTGACTAGAATTATAA
1 ATTTTGACTAGCATTATAA
72548617 CTTCCACCAT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 63 0.97
55 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (54 bp):
ATTTTGACTAGCATTATAATTTTGACCAGCATTGTAATTTTGACCAGCAGTGCA
Found at i:72548597 original size:18 final size:18
Alignment explanation
Indices: 72548507--72548605 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
72548497 CTAGCATGAC
72548507 AATTTTGACCAGCATTGT
1 AATTTTGACCAGCATTGT
*
72548525 AATTTTGACCAGCA-TGAC
1 AATTTTGACCAGCATTG-T
*
72548543 AATTTTGACCAGCATTAT
1 AATTTTGACCAGCATTGT
72548561 AATTTTGACCAGCATTGT
1 AATTTTGACCAGCATTGT
* *
72548579 AATTTTGACCAGTAGTGT
1 AATTTTGACCAGCATTGT
72548597 AATTTTGAC
1 AATTTTGAC
72548606 TAGAATTATA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 2 0.03
18 70 0.96
19 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (18 bp):
AATTTTGACCAGCATTGT
Found at i:72554187 original size:11 final size:10
Alignment explanation
Indices: 72554153--72554207 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 10
72554143 CCTGGGCAGT
72554153 AGAAGAAAA-
1 AGAAGAAAAG
*
72554162 A-AAGAAAAA
1 AGAAGAAAAG
*
72554171 AAAAGAATAAG
1 AGAAGAA-AAG
72554182 AGAAGAAACAG
1 AGAAGAAA-AG
72554193 AGAAGAAAA-
1 AGAAGAAAAG
72554202 AGAAGA
1 AGAAGA
72554208 GGAGGAGAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
8 7 0.17
9 8 0.20
10 7 0.17
11 18 0.45
ACGTcount: A:0.75, C:0.02, G:0.22, T:0.02
Consensus pattern (10 bp):
AGAAGAAAAG
Found at i:72554566 original size:18 final size:20
Alignment explanation
Indices: 72554543--72554582 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
72554533 CTATTTATTT
72554543 TTCATTTT-TCTCC-ACTTC
1 TTCATTTTCTCTCCTACTTC
*
72554561 TTCATTTTCTTTCCTACTTC
1 TTCATTTTCTCTCCTACTTC
72554581 TT
1 TT
72554583 TTTCTTCACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 4 0.21
20 7 0.37
ACGTcount: A:0.10, C:0.30, G:0.00, T:0.60
Consensus pattern (20 bp):
TTCATTTTCTCTCCTACTTC
Found at i:72555634 original size:21 final size:21
Alignment explanation
Indices: 72555610--72555650 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
72555600 CTACGTGGCA
*
72555610 AGTTAACTTGCCACGTTAGCT
1 AGTTAACTTGCCACATTAGCT
*
72555631 AGTTAACTTGCTACATTAGC
1 AGTTAACTTGCCACATTAGC
72555651 GCTCCCGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (21 bp):
AGTTAACTTGCCACATTAGCT
Found at i:72558752 original size:24 final size:24
Alignment explanation
Indices: 72558717--72558764 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
72558707 AACAAGTTGC
*
72558717 ACGTTGTGGTCAAGCCATTAAATA
1 ACGTTGTAGTCAAGCCATTAAATA
*
72558741 ACGTTGTAGTCAAGCCATTGAATA
1 ACGTTGTAGTCAAGCCATTAAATA
72558765 TTGCAGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (24 bp):
ACGTTGTAGTCAAGCCATTAAATA
Found at i:72559496 original size:30 final size:30
Alignment explanation
Indices: 72559461--72559520 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
72559451 AGTTTAAAGG
72559461 TAGTTCATTTTTTATTTATCTTTTAAATTC
1 TAGTTCATTTTTTATTTATCTTTTAAATTC
72559491 TAGTTCATTTTTTATTTATCTTTTAAATTC
1 TAGTTCATTTTTTATTTATCTTTTAAATTC
72559521 CAAAAATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.63
Consensus pattern (30 bp):
TAGTTCATTTTTTATTTATCTTTTAAATTC
Found at i:72560544 original size:17 final size:17
Alignment explanation
Indices: 72560514--72560552 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
72560504 ATCATTATGA
72560514 ATTATGTTGTTATTACT
1 ATTATGTTGTTATTACT
*
72560531 ATTATAGTTG-TATTATT
1 ATTAT-GTTGTTATTACT
72560548 ATTAT
1 ATTAT
72560553 TTACTCACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (17 bp):
ATTATGTTGTTATTACT
Found at i:72562738 original size:46 final size:45
Alignment explanation
Indices: 72562671--72562938 Score: 212
Period size: 46 Copynumber: 5.8 Consensus size: 45
72562661 TGTAACACGC
* * *
72562671 CCATAAGC-GAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAA-CTGAACTCGGACTCAACTCAACGAGTTC-GGCGTTCACAT
* *
72562717 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ATAT
1 CCATAACTGAACTCGGACTCAACTCAACGAGTTC-G--G-C--GTTCACAT
*
72562767 -C-TCAC-GAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
1 CCATAACTGAACTCGGACTCAACTCAACGAGTTCGG-CGTTCACAT
* * *
72562810 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCAGATACCTAGTT-ACAT
1 CCATAACTGAACTCGGACTCAACTCAACGAGTTC-G---GC--GTTCACAT
* * *
72562860 -C-TCAC-GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAACTGAACTCGGACTCAACTCAACGAGTTC-GGCGTTCACAT
*
72562903 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAACTGAACTCGGACTCAACTCAACGAGTTCGG
72562939 ATGCCCAAAT
Statistics
Matches: 181, Mismatches: 21, Indels: 41
0.74 0.09 0.17
Matches are distributed among these distances:
42 5 0.03
43 6 0.03
44 5 0.03
45 7 0.04
46 84 0.46
47 52 0.29
48 6 0.03
49 4 0.02
50 6 0.03
51 6 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAACTGAACTCGGACTCAACTCAACGAGTTCGGCGTTCACAT
Found at i:72562790 original size:47 final size:46
Alignment explanation
Indices: 72562725--72562892 Score: 200
Period size: 47 Copynumber: 3.6 Consensus size: 46
72562715 ATCCATAACT
* *
72562725 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTATATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGAT-CCTAGTTACATCTCAC
* *
72562772 GAACTCGGACTCAACTCAACGAGTTCGGA--C--GTTCACATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATCCTAGTT-ACAT-C-TCA-C
* *
72562818 GAACTCGGACTTAACTCAACGAGTTCAGATACCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGAT-CCTAGTTACATCTCAC
72562865 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
72562893 GCATTCGCAT
Statistics
Matches: 102, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 27 0.26
47 54 0.53
48 2 0.02
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATCCTAGTTACATCTCAC
Found at i:72562794 original size:93 final size:92
Alignment explanation
Indices: 72562678--72562943 Score: 415
Period size: 93 Copynumber: 2.9 Consensus size: 92
72562668 CGCCCATAAG
* * *
72562678 CGAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAACTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTC-GGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
72562743 ACGAGCTCGGATGCCTAGTTATATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
72562771 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACATCCATAAGTGAACTCGGACTTAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
72562836 ACGAGTTCAGATACCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
*
72562864 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTC-GGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
72562929 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
72562944 CAAATATCCT
Statistics
Matches: 157, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
92 2 0.01
93 153 0.97
94 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72569057 original size:19 final size:19
Alignment explanation
Indices: 72568999--72569057 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
72568989 CAATTTTTTT
72568999 ACAATTTAATCCTTGTTATACA
1 ACAATTTAATCCTT-TT-T-CA
* * *
72569021 A-AATTTACTACTTGTTCA
1 ACAATTTAATCCTTTTTCA
72569039 ACAATTTAATCCTTTTTCA
1 ACAATTTAATCCTTTTTCA
72569058 TTTCCAGCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
18 3 0.10
19 15 0.50
20 1 0.03
21 10 0.33
22 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.03, T:0.44
Consensus pattern (19 bp):
ACAATTTAATCCTTTTTCA
Found at i:72569302 original size:24 final size:24
Alignment explanation
Indices: 72569270--72569351 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
72569260 CCTTCGTCTG
*
72569270 TTTCTTTCTCCTTTTTCTTTTTTT
1 TTTCTTTCTCCTTTTTCTTTTCTT
* * * *
72569294 TTTCTTTCTCGTTTTGCTTCTCTG
1 TTTCTTTCTCCTTTTTCTTTTCTT
72569318 TTTCGTTTCTACC--TTTCTATTTCTT
1 TTTC-TTTCT-CCTTTTTCT-TTTCTT
72569343 TTTCTTTCT
1 TTTCTTTCT
72569352 TTCTTTATTT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
24 32 0.70
25 13 0.28
26 1 0.02
ACGTcount: A:0.02, C:0.23, G:0.05, T:0.70
Consensus pattern (24 bp):
TTTCTTTCTCCTTTTTCTTTTCTT
Found at i:72572184 original size:20 final size:19
Alignment explanation
Indices: 72572143--72572195 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
72572133 ACACATGCAT
72572143 AACATAA-CATTTATCATC
1 AACATAATCATTTATCATC
72572161 AACATAATCA-TTATACATTC
1 AACATAATCATTTAT-CA-TC
72572181 AACATAATCATTTAT
1 AACATAATCATTTAT
72572196 TACTAGCTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.35
19 4 0.13
20 12 0.39
21 4 0.13
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (19 bp):
AACATAATCATTTATCATC
Found at i:72579792 original size:46 final size:48
Alignment explanation
Indices: 72579741--72579871 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 48
72579731 ATGGTTGAGC
72579741 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * * *
72579788 -TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
72579833 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72579872 GCGGGTTACA
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 28 0.41
47 28 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:72582269 original size:8 final size:8
Alignment explanation
Indices: 72582258--72582290 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
72582248 GTTTACAGTC
72582258 ATACATAT
1 ATACATAT
72582266 ATACATAT
1 ATACATAT
*
72582274 ATACACAT
1 ATACATAT
72582282 AT-CATAT
1 ATACATAT
72582289 AT
1 AT
72582291 GGATATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (8 bp):
ATACATAT
Found at i:72583166 original size:15 final size:15
Alignment explanation
Indices: 72583146--72583175 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
72583136 GGAAGAAAAG
72583146 GCGTCAATTTTTCTT
1 GCGTCAATTTTTCTT
72583161 GCGTCAATTTTTCTT
1 GCGTCAATTTTTCTT
72583176 TCTCCAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.13, T:0.53
Consensus pattern (15 bp):
GCGTCAATTTTTCTT
Found at i:72583443 original size:37 final size:37
Alignment explanation
Indices: 72583391--72583466 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
72583381 AACCACTAGA
*
72583391 CCAGCAGGCCTATTCTGTTATATTTTCACAAACTTAT
1 CCAGCAGGCCCATTCTGTTATATTTTCACAAACTTAT
*
72583428 CCAGCAGGCCCATTCTGTTATATTTTCACACACTTAT
1 CCAGCAGGCCCATTCTGTTATATTTTCACAAACTTAT
72583465 CC
1 CC
72583467 TTATAAGCCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.36
Consensus pattern (37 bp):
CCAGCAGGCCCATTCTGTTATATTTTCACAAACTTAT
Found at i:72587250 original size:14 final size:15
Alignment explanation
Indices: 72587231--72587259 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72587221 ATATTTAGCT
72587231 CTTTTC-TTTTGTTC
1 CTTTTCTTTTTGTTC
72587245 CTTTTCTTTTTGTTC
1 CTTTTCTTTTTGTTC
72587260 TGTCGATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.21, G:0.07, T:0.72
Consensus pattern (15 bp):
CTTTTCTTTTTGTTC
Found at i:72590144 original size:26 final size:25
Alignment explanation
Indices: 72590108--72590162 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
72590098 TGTTTTTTAG
*
72590108 GTTTTTGGTGCTATTTTGGTGATGTT
1 GTTTTTGGTGCT-GTTTGGTGATGTT
* *
72590134 GTTTTTTGTGCTGTTTGGTGCTGTT
1 GTTTTTGGTGCTGTTTGGTGATGTT
72590159 -TTTT
1 GTTTT
72590163 GTGTTGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 4 0.15
25 11 0.42
26 11 0.42
ACGTcount: A:0.04, C:0.05, G:0.29, T:0.62
Consensus pattern (25 bp):
GTTTTTGGTGCTGTTTGGTGATGTT
Found at i:72590172 original size:12 final size:12
Alignment explanation
Indices: 72590133--72590182 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
72590123 TTGGTGATGT
72590133 TGTTTTTTGTGC
1 TGTTTTTTGTGC
*
72590145 TG--TTTGGTGC
1 TGTTTTTTGTGC
*
72590155 TGTTTTTTGTGT
1 TGTTTTTTGTGC
*
72590167 TG-TTTTTATGC
1 TGTTTTTTGTGC
72590178 TGTTT
1 TGTTT
72590183 GGTGTTGTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 9 0.30
11 9 0.30
12 12 0.40
ACGTcount: A:0.02, C:0.06, G:0.26, T:0.66
Consensus pattern (12 bp):
TGTTTTTTGTGC
Found at i:72590179 original size:33 final size:33
Alignment explanation
Indices: 72590111--72590204 Score: 118
Period size: 33 Copynumber: 2.8 Consensus size: 33
72590101 TTTTTAGGTT
* *
72590111 TTTGGTGCTATTTTGGTGATGTTGTTTTTTGTGCTG
1 TTTGGTGCTGTTTT-GTG-TGTTG-TTTTTATGCTG
*
72590147 TTTGGTGCTGTTTTTTGTGTTGTTTTTATGCTG
1 TTTGGTGCTGTTTTGTGTGTTGTTTTTATGCTG
*
72590180 TTTGGTGTTGTTTTGT-TGTTGTTTT
1 TTTGGTGCTGTTTTGTGTGTTGTTTT
72590205 GGTATTGTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
32 9 0.17
33 24 0.45
34 5 0.09
35 2 0.04
36 13 0.25
ACGTcount: A:0.03, C:0.04, G:0.29, T:0.64
Consensus pattern (33 bp):
TTTGGTGCTGTTTTGTGTGTTGTTTTTATGCTG
Found at i:72590189 original size:21 final size:22
Alignment explanation
Indices: 72590152--72590218 Score: 75
Period size: 21 Copynumber: 3.0 Consensus size: 22
72590142 TGCTGTTTGG
*
72590152 TGCTGTTTTTTGTGTTGTTTTTA
1 TGCTG-TTTTGGTGTTGTTTTTA
72590175 TGCTG-TTTGGTGTTGTTTTGT-
1 TGCTGTTTTGGTGTTGTTTT-TA
* *
72590196 TGTTGTTTTGGTATTGTTTTTA
1 TGCTGTTTTGGTGTTGTTTTTA
72590218 T
1 T
72590219 ACTTAGGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 18 0.47
22 15 0.39
23 5 0.13
ACGTcount: A:0.04, C:0.03, G:0.25, T:0.67
Consensus pattern (22 bp):
TGCTGTTTTGGTGTTGTTTTTA
Found at i:72590194 original size:11 final size:11
Alignment explanation
Indices: 72590147--72590215 Score: 59
Period size: 11 Copynumber: 6.3 Consensus size: 11
72590137 TTTTGTGCTG
*
72590147 TTTGGTGCTGTT
1 TTTGGTGTTG-T
*
72590159 TTTTGTGTTGT
1 TTTGGTGTTGT
** *
72590170 TTTTATGCTG-
1 TTTGGTGTTGT
72590180 TTTGGTGTTGT
1 TTTGGTGTTGT
*
72590191 TTTGTTGTTGT
1 TTTGGTGTTGT
*
72590202 TTTGGTATTGT
1 TTTGGTGTTGT
72590213 TTT
1 TTT
72590216 TATACTTAGG
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
10 7 0.15
11 31 0.67
12 8 0.17
ACGTcount: A:0.03, C:0.03, G:0.28, T:0.67
Consensus pattern (11 bp):
TTTGGTGTTGT
Found at i:72591163 original size:24 final size:25
Alignment explanation
Indices: 72591130--72591176 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72591120 CTTATTTTAA
* *
72591130 TATTTGTTTA-TATGTTTTTAAATG
1 TATTTATTTATTATATTTTTAAATG
72591154 TATTTATTTATTATATTTTTAAA
1 TATTTATTTATTATATTTTTAAA
72591177 ATTTTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (25 bp):
TATTTATTTATTATATTTTTAAATG
Found at i:72591184 original size:25 final size:27
Alignment explanation
Indices: 72591137--72591188 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
72591127 TAATATTTGT
*
72591137 TTATATGTTTTTAAATGTATTTATTTA
1 TTATATGTTTTAAAATGTATTTATTTA
*
72591164 TTATAT-TTTTAAAAT-TTTTTATTTA
1 TTATATGTTTTAAAATGTATTTATTTA
72591189 ATGAAATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.39
26 8 0.35
27 6 0.26
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (27 bp):
TTATATGTTTTAAAATGTATTTATTTA
Found at i:72591506 original size:17 final size:16
Alignment explanation
Indices: 72591472--72591530 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 16
72591462 ATGATTATTA
* *
72591472 TATATAATATATATACT
1 TATATATTA-ATAAACT
72591489 TATATATTAAGTAAACT
1 TATATATTAA-TAAACT
*
72591506 TAT-T-TTAATAAAAT
1 TATATATTAATAAACT
72591520 ATATATATTAA
1 -TATATATTAA
72591531 ATTCACATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 5 0.14
15 7 0.20
16 3 0.09
17 20 0.57
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (16 bp):
TATATATTAATAAACT
Found at i:72600968 original size:40 final size:39
Alignment explanation
Indices: 72600883--72600995 Score: 147
Period size: 40 Copynumber: 2.9 Consensus size: 39
72600873 GCTTCTGTTT
* *
72600883 AGCTCTTATGAGCTTCTG-TTGGCGTGTTTCAGTAGGACC
1 AGCTCTTATGAGCTTCTGTTTGGTGT-TTTCAGTTGGACC
*
72600922 AGCTCTTATGAGCTTCTGTTTGGTGTATTTCAGTTGGATC
1 AGCTCTTATGAGCTTCTGTTTGGTGT-TTTCAGTTGGACC
* * *
72600962 ATCTCTTATGAGCTTTTGTTTGGTGTGTTCAGTT
1 AGCTCTTATGAGCTTCTGTTTGGTGTTTTCAGTT
72600996 TATATGACGA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 25 0.38
40 41 0.62
ACGTcount: A:0.14, C:0.16, G:0.26, T:0.44
Consensus pattern (39 bp):
AGCTCTTATGAGCTTCTGTTTGGTGTTTTCAGTTGGACC
Found at i:72602373 original size:17 final size:17
Alignment explanation
Indices: 72602351--72602393 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
72602341 AAGTATGCAC
*
72602351 ATGTTTAGGAATGTTTA
1 ATGTTTAGGAATATTTA
*
72602368 ATGTTTAAGAATATTTA
1 ATGTTTAGGAATATTTA
*
72602385 ATGTATAGG
1 ATGTTTAGG
72602394 TGTTTTGTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (17 bp):
ATGTTTAGGAATATTTA
Found at i:72602898 original size:19 final size:19
Alignment explanation
Indices: 72602852--72602899 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
72602842 GTATATATTT
72602852 TAAA-TTTATTTAGGTAAA
1 TAAATTTTATTTAGGTAAA
* *
72602870 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAAA
*
72602889 TAAGTTTTATT
1 TAAATTTTATT
72602900 CATATTTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAAA
Found at i:72604044 original size:37 final size:37
Alignment explanation
Indices: 72603994--72604106 Score: 190
Period size: 37 Copynumber: 3.1 Consensus size: 37
72603984 CTTTAGCTCA
* *
72603994 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
72604031 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
72604068 GACATAATCTCCACACGTAGTCATCGGGTCTTATCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
72604105 GA
1 GA
72604107 ATATATTTCC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:72604372 original size:47 final size:47
Alignment explanation
Indices: 72604311--72604495 Score: 271
Period size: 47 Copynumber: 3.9 Consensus size: 47
72604301 TACATATATT
** * * *
72604311 TCACATTATCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
72604358 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
72604405 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
72604452 TCACATTGGCCATTCAGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
72604496 CACAATTATC
Statistics
Matches: 124, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 124 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:72604476 original size:22 final size:22
Alignment explanation
Indices: 72604357--72604479 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
72604347 GTTCATATTC
*
72604357 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCAGCCTT
*
72604379 ATCACACATAT-G-CATGCTCA-CATT
1 AT--CACAT-TGGCCAT--TCAGCCTT
**
72604403 CATCACATTGGCCATTTGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
* *
72604426 ATCACATATATG-CATGTTCA-CATT
1 ATCACAT-T-GGCCA--TTCAGCCTT
72604450 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTCAGCCTT
72604473 ATCACAT
1 ATCACAT
72604480 ATATGCACAT
Statistics
Matches: 74, Mismatches: 11, Indels: 32
0.63 0.09 0.27
Matches are distributed among these distances:
22 22 0.30
23 19 0.26
24 19 0.26
25 14 0.19
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:72611636 original size:42 final size:42
Alignment explanation
Indices: 72611578--72611661 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
72611568 TATTTTTATT
72611578 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
* *
72611620 TTATGTTTTAGTAGTTTATTAGAATAAGGGAACTGTTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
72611662 AATTAGGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.45
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
Found at i:72613767 original size:22 final size:23
Alignment explanation
Indices: 72613719--72613767 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
72613709 TTAATAGTAA
*
72613719 TTAGAAAGTAGAGTTCTATTTTAT
1 TTAGAAAGCAGAGTTCTA-TTTAT
*
72613743 TTAGAAAGCATAGTTCTA-TTAT
1 TTAGAAAGCAGAGTTCTATTTAT
72613765 TTA
1 TTA
72613768 TACTTCTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
24 16 0.70
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (23 bp):
TTAGAAAGCAGAGTTCTATTTAT
Found at i:72614236 original size:12 final size:13
Alignment explanation
Indices: 72614204--72614234 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
72614194 AGTTTTTTTA
72614204 AAAAAATATATTT
1 AAAAAATATATTT
*
72614217 AAAAAATATTTTT
1 AAAAAATATATTT
72614230 AAAAA
1 AAAAA
72614235 TAAAATATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AAAAAATATATTT
Found at i:72614686 original size:17 final size:18
Alignment explanation
Indices: 72614649--72614686 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
72614639 TCTTACTACT
72614649 ATTTTGTTATTATTAAGTTA
1 ATTTTGTTATTATT-A-TTA
72614669 ATTTTGTTATTATT-TTA
1 ATTTTGTTATTATTATTA
72614686 A
1 A
72614687 AGACATTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
20 14 0.78
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (18 bp):
ATTTTGTTATTATTATTA
Found at i:72614868 original size:12 final size:12
Alignment explanation
Indices: 72614847--72614880 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
72614837 TATATATTTT
*
72614847 AAAATTATATAA
1 AAAATAATATAA
72614859 AAAATAATATAA
1 AAAATAATATAA
*
72614871 AAATTAATAT
1 AAAATAATAT
72614881 GAGCTGGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:72615225 original size:7 final size:8
Alignment explanation
Indices: 72615208--72615244 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
72615198 GTTGCATTAA
72615208 AAAAAAGG
1 AAAAAAGG
*
72615216 AAAAAAGA
1 AAAAAAGG
72615224 AAAAAAGG
1 AAAAAAGG
72615232 -AAAAAGG
1 AAAAAAGG
72615239 AAAAAA
1 AAAAAA
72615245 TAATCCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAAGG
Found at i:72615226 original size:16 final size:16
Alignment explanation
Indices: 72615207--72615244 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
72615197 GGTTGCATTA
72615207 AAAAAAAGGAAAAAAG
1 AAAAAAAGGAAAAAAG
*
72615223 AAAAAAAGGAAAAAGG
1 AAAAAAAGGAAAAAAG
72615239 AAAAAA
1 AAAAAA
72615245 TAATCCTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAAGGAAAAAAG
Found at i:72629299 original size:6 final size:6
Alignment explanation
Indices: 72629288--72629327 Score: 71
Period size: 6 Copynumber: 6.5 Consensus size: 6
72629278 AGGTTTTCTC
72629288 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAGAAAT GAA
1 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GA-AAAT GAA
72629328 TTCATTTAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.65, C:0.00, G:0.20, T:0.15
Consensus pattern (6 bp):
GAAAAT
Found at i:72639670 original size:19 final size:20
Alignment explanation
Indices: 72639646--72639683 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72639636 GGTACCACCA
72639646 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
72639665 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
72639684 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:72646204 original size:6 final size:6
Alignment explanation
Indices: 72646193--72646219 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
72646183 ATTTATCTAA
72646193 TATAAT TATAAT TATAAT TATAAT TAT
1 TATAAT TATAAT TATAAT TATAAT TAT
72646220 TAAGAGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TATAAT
Found at i:72646439 original size:34 final size:34
Alignment explanation
Indices: 72646391--72646493 Score: 179
Period size: 34 Copynumber: 3.0 Consensus size: 34
72646381 TTGGTATACT
* *
72646391 ATCATGACTTCATCTATTGAATTCTAGGAAAACA
1 ATCATGAATCCATCTATTGAATTCTAGGAAAACA
72646425 ATCATGAATCCATCTATTGAATTCTAGGAAAACA
1 ATCATGAATCCATCTATTGAATTCTAGGAAAACA
*
72646459 ATCATGAATCCATCTATTGAATTCCAGGAAAACA
1 ATCATGAATCCATCTATTGAATTCTAGGAAAACA
72646493 A
1 A
72646494 CATAGAAAAG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (34 bp):
ATCATGAATCCATCTATTGAATTCTAGGAAAACA
Found at i:72648311 original size:37 final size:38
Alignment explanation
Indices: 72648245--72648359 Score: 146
Period size: 37 Copynumber: 3.1 Consensus size: 38
72648235 AACGTAAAGT
* *
72648245 TATTCGGGCTTCATGCCTAGAA-GCTTTGTGCCGGTGA
1 TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
*
72648282 TATTTGGGC-CCATGCCTAAAAGGCTTTGTGCCGGTGA
1 TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
*** *
72648319 TATTTGGGCTTTGTGCCTAGTAGGCTTTGTGCCGGTG-
1 TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
72648356 TATT
1 TATT
72648360 ATATCAGGCT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
36 10 0.15
37 36 0.53
38 22 0.32
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.36
Consensus pattern (38 bp):
TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
Found at i:72648385 original size:41 final size:41
Alignment explanation
Indices: 72648302--72648493 Score: 230
Period size: 41 Copynumber: 4.8 Consensus size: 41
72648292 CATGCCTAAA
** *
72648302 AGGCTTTGTGCCGGTG-A-TAT-TTGGGCTTTGTGCCTAGT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* *
72648340 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTGCCTAGC
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* *
72648381 AGGCTTTGTGCTGGTGTATTATATTAGGCTTTGTACCTAGT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* ** *
72648422 AGTCTTCT-TTTCGGTGTATTATATCAGGTTTTGTACCTAGT
1 AGGCTT-TGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* *
72648463 AGGTTTTGTGCCGGTGTATTATGTCAGGCTT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTT
72648494 CGAGCATGGC
Statistics
Matches: 130, Mismatches: 19, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
38 16 0.12
39 1 0.01
40 4 0.03
41 108 0.83
42 1 0.01
ACGTcount: A:0.15, C:0.15, G:0.28, T:0.42
Consensus pattern (41 bp):
AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
Found at i:72648508 original size:82 final size:82
Alignment explanation
Indices: 72648351--72648510 Score: 205
Period size: 82 Copynumber: 2.0 Consensus size: 82
72648341 GGCTTTGTGC
* * * *
72648351 CGGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTAGGCTTTGTA
1 CGGTGTATTATATCAGGCTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA
* *
72648416 CCTAGTAGTCTTCTTTT
66 CATAGCAGTCTTCTTTT
* * * *
72648433 CGGTGTATTATATCAGGTTTTGTACCTAGTAGGTTTTGTGCCGGTGTATTATGTCAGGCTTCG-A
1 CGGTGTATTATATCAGGCTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA
*
72648497 GCATGGCAGTCTTC
66 -CATAGCAGTCTTC
72648511 ATGCCAATGT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
81 1 0.02
82 65 0.98
ACGTcount: A:0.16, C:0.16, G:0.26, T:0.41
Consensus pattern (82 bp):
CGGTGTATTATATCAGGCTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA
CATAGCAGTCTTCTTTT
Found at i:72648522 original size:82 final size:82
Alignment explanation
Indices: 72648354--72648532 Score: 189
Period size: 82 Copynumber: 2.2 Consensus size: 82
72648344 TTTGTGCCGG
* * * * * *
72648354 TGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTAGGCTTTGTACCT
1 TGTATTATATCAGGTTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTACAT
* * ** **
72648419 AGTAGTCTTCTTTTCGG
66 AGCAGTCTTCATGCCAA
* * *
72648436 TGTATTATATCAGGTTTTGTACCTAGTAGGTTTTGTGCCGGTGTATTATGTCAGGCTTCG-AGCA
1 TGTATTATATCAGGTTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA-CA
*
72648500 TGGCAGTCTTCATGCCAA
65 TAGCAGTCTTCATGCCAA
*
72648518 TGTATTGTATCAGGT
1 TGTATTATATCAGGT
72648533 AAGTTGTACT
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
81 1 0.01
82 78 0.99
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (82 bp):
TGTATTATATCAGGTTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTACAT
AGCAGTCTTCATGCCAA
Found at i:72655545 original size:27 final size:25
Alignment explanation
Indices: 72655479--72655527 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
72655469 CCAAACCAAA
* *
72655479 CCTTTATGACAAATTTTCTGAAAAG
1 CCTTTGTGGCAAATTTTCTGAAAAG
72655504 CCTTTGTGGCAAATTTTCTGAAAA
1 CCTTTGTGGCAAATTTTCTGAAAA
72655528 AAGCTTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (25 bp):
CCTTTGTGGCAAATTTTCTGAAAAG
Found at i:72661983 original size:24 final size:24
Alignment explanation
Indices: 72661944--72662002 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
72661934 TGGATACTCC
* *
72661944 ATAGCT-CGTGTGAGTAGCATTGT
1 ATAGCTACGTTTGAGTAGCATCGT
72661967 ATAGCTACGTTTGAGTAGCATCGT
1 ATAGCTACGTTTGAGTAGCATCGT
*
72661991 GTAGCTACGTTT
1 ATAGCTACGTTT
72662003 CAACCCATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (24 bp):
ATAGCTACGTTTGAGTAGCATCGT
Found at i:72662051 original size:25 final size:25
Alignment explanation
Indices: 72662020--72662151 Score: 108
Period size: 25 Copynumber: 5.3 Consensus size: 25
72662010 TAACTTGTGT
* * *
72662020 GAGCATACCAATTTACAGCTCATGA
1 GAGCATACCGATCTACAGCTCGTGA
* * *
72662045 GAGCATACTGATCTACAACTCGTGT
1 GAGCATACCGATCTACAGCTCGTGA
* *
72662070 GAGCATA-CTATTTACAGCTCGTGA
1 GAGCATACCGATCTACAGCTCGTGA
* * * *
72662094 GAGCATACCGATCTACAGTTTGAGT
1 GAGCATACCGATCTACAGCTCGTGA
*
72662119 GAGCATATCGAT-TCACAGCTCGT-A
1 GAGCATACCGATCT-ACAGCTCGTGA
72662143 TGAGCATAC
1 -GAGCATAC
72662152 ATGTGCAGGA
Statistics
Matches: 81, Mismatches: 23, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
24 20 0.25
25 61 0.75
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (25 bp):
GAGCATACCGATCTACAGCTCGTGA
Found at i:72662095 original size:49 final size:50
Alignment explanation
Indices: 72662011--72662151 Score: 169
Period size: 49 Copynumber: 2.8 Consensus size: 50
72662001 TTCAACCCAT
* *
72662011 AACTTGTGTGAGCATACCAATTTACAGCTCATGAGAGCATACTGATCTAC
1 AACTTGTGTGAGCATACCAATTTACAGCTCGTGAGAGCATACCGATCTAC
* *
72662061 AACTCGTGTGAGCATA-CTATTTACAGCTCGTGAGAGCATACCGATCTAC
1 AACTTGTGTGAGCATACCAATTTACAGCTCGTGAGAGCATACCGATCTAC
** * * * *
72662110 AGTTTGAGTGAGCATATCGATTCACAGCTCGT-ATGAGCATAC
1 AACTTGTGTGAGCATACCAATTTACAGCTCGTGA-GAGCATAC
72662152 ATGTGCAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
49 43 0.54
50 36 0.46
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (50 bp):
AACTTGTGTGAGCATACCAATTTACAGCTCGTGAGAGCATACCGATCTAC
Found at i:72673891 original size:40 final size:40
Alignment explanation
Indices: 72673831--72673936 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
72673821 ACGACAAATT
* * *
72673831 GGCTACGTATGGCACTTAGTGTGCGATTCAAGATAGCTTG
1 GGCTATGTATGGCACCTAGTGTGCGATTCAAGATAGCTTC
*
72673871 GGCTATGTATGACACCTAGTGTGCGATTCAAGATAGCTTC
1 GGCTATGTATGGCACCTAGTGTGCGATTCAAGATAGCTTC
72673911 GGCTATGTATGGCACCTAGTGTGCGA
1 GGCTATGTATGGCACCTAGTGTGCGA
72673937 GGTTAAAACA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
GGCTATGTATGGCACCTAGTGTGCGATTCAAGATAGCTTC
Found at i:72676297 original size:18 final size:17
Alignment explanation
Indices: 72676274--72676318 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 17
72676264 GTCAACAGAG
72676274 CTTGCAAAGCCAATGAA
1 CTTGCAAAGCCAATGAA
72676291 TCTTGCAAAGCCAATGAA
1 -CTTGCAAAGCCAATGAA
72676309 CTTAGCAAAG
1 CTT-GCAAAG
72676319 TAAAGAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (17 bp):
CTTGCAAAGCCAATGAA
Found at i:72681389 original size:40 final size:40
Alignment explanation
Indices: 72681334--72681517 Score: 289
Period size: 40 Copynumber: 4.5 Consensus size: 40
72681324 CGACAATTCA
*
72681334 GCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
72681374 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTGG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
72681414 GCTATGTATGGCACCTAGTGTGTGATTCAAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
72681454 GCTATGTATGGCACTTAGTGTGTGAGGTT-AAAATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGA--TTCAAGATAGCTTCG
*
72681495 GCTATGTTTTGGCACTTAGTGTG
1 GCTATG-TATGGCACTTAGTGTG
72681518 CGATAATTTG
Statistics
Matches: 134, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 100 0.75
41 17 0.13
42 17 0.13
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.35
Consensus pattern (40 bp):
GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
Found at i:72686731 original size:8 final size:9
Alignment explanation
Indices: 72686707--72686843 Score: 57
Period size: 10 Copynumber: 14.7 Consensus size: 9
72686697 CAGATAAAAA
*
72686707 ATAAAAATCA
1 ATAAAAAT-T
72686717 ATAAAAATT
1 ATAAAAATT
72686726 ATAAAAATT
1 ATAAAAATT
**
72686735 ATGAAATTTT
1 AT-AAAAATT
72686745 AATAAAAA-T
1 -ATAAAAATT
*
72686754 AAAAAAATT
1 ATAAAAATT
***
72686763 A-AATTTTT
1 ATAAAAATT
72686771 ATTAAAAATT
1 A-TAAAAATT
*
72686781 AGAAAAA-T
1 ATAAAAATT
72686789 ATTATAAAATT
1 A-TA-AAAATT
* *
72686800 GTAAAAATG
1 ATAAAAATT
72686809 AT-AAAATAT
1 ATAAAAAT-T
*
72686818 ATAGAAATAT
1 ATAAAAAT-T
*
72686828 AGAAAAATAT
1 ATAAAAAT-T
72686838 ATAAAA
1 ATAAAA
72686844 TTTTATAAAG
Statistics
Matches: 95, Mismatches: 22, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
8 18 0.19
9 28 0.29
10 46 0.48
11 3 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (9 bp):
ATAAAAATT
Found at i:72686770 original size:26 final size:28
Alignment explanation
Indices: 72686716--72686788 Score: 87
Period size: 26 Copynumber: 2.6 Consensus size: 28
72686706 AATAAAAATC
*
72686716 AATAAAAATTATAAAAATTATGAAATTTT
1 AATAAAAATTAAAAAAATTA-GAAATTTT
*
72686745 AATAAAAA-TAAAAAAATTA-AATTTTT
1 AATAAAAATTAAAAAAATTAGAAATTTT
* *
72686771 ATTAAAAATTAGAAAAAT
1 AATAAAAATTAAAAAAAT
72686789 ATTATAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 13 0.33
27 8 0.21
28 10 0.26
29 8 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (28 bp):
AATAAAAATTAAAAAAATTAGAAATTTT
Found at i:72686792 original size:29 final size:27
Alignment explanation
Indices: 72686716--72686792 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 27
72686706 AATAAAAATC
*
72686716 AATAAAAATTATAAAAATTATGAAATTTT
1 AATAAAAATTA-AAAAA-TATTAAATTTT
72686745 AATAAAAA-TAAAAAA-ATTAAATTTTT
1 AATAAAAATTAAAAAATATTAAA-TTTT
*
72686771 ATTAAAAATTAGAAAAATATTA
1 AATAAAAATTA-AAAAATATTA
72686793 TAAAATTGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
25 5 0.12
26 11 0.26
27 7 0.17
28 7 0.17
29 12 0.29
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (27 bp):
AATAAAAATTAAAAAATATTAAATTTT
Found at i:72686852 original size:39 final size:40
Alignment explanation
Indices: 72686809--72686885 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 40
72686799 TGTAAAAATG
*
72686809 ATAAAAT-ATATAG-AAAT-ATAGAAAAATATATAAAATTTT
1 ATAAAATCAT-TAGAAAATGATAAAAAAATATA-AAAATTTT
*
72686848 ATAAAGTCATTAGAAAATGATAAAAAAATATAAAAATT
1 ATAAAATCATTAGAAAATGATAAAAAAATATAAAAATT
72686886 ATCATACCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
39 9 0.27
40 12 0.36
41 12 0.36
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.30
Consensus pattern (40 bp):
ATAAAATCATTAGAAAATGATAAAAAAATATAAAAATTTT
Found at i:72687087 original size:19 final size:19
Alignment explanation
Indices: 72687059--72687096 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
72687049 TTAAAGGGTC
72687059 TTTTTGATTCATTTTATAA
1 TTTTTGATTCATTTTATAA
* *
72687078 TTTTTTATTCTTTTTATAA
1 TTTTTGATTCATTTTATAA
72687097 AATTTTTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTGATTCATTTTATAA
Found at i:72687102 original size:19 final size:20
Alignment explanation
Indices: 72687060--72687102 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
72687050 TAAAGGGTCT
*
72687060 TTTTGATTCATTTTAT-AAT
1 TTTTGATTCATTTTATAAAA
* *
72687079 TTTTTATTCTTTTTATAAAA
1 TTTTGATTCATTTTATAAAA
72687099 TTTT
1 TTTT
72687103 TACAACTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTGATTCATTTTATAAAA
Found at i:72687128 original size:10 final size:10
Alignment explanation
Indices: 72687099--72687130 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
72687089 TTTTATAAAA
*
72687099 TTTTTACAAC
1 TTTTTACAAT
72687109 TTTTTACAAT
1 TTTTTACAAT
72687119 TTTTTACAAT
1 TTTTTACAAT
72687129 TT
1 TT
72687131 ATATTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.59
Consensus pattern (10 bp):
TTTTTACAAT
Found at i:72687176 original size:19 final size:20
Alignment explanation
Indices: 72687154--72687191 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
72687144 ATTTTTGGTG
72687154 AAATTTAAAT-ATTTTTATT
1 AAATTTAAATAATTTTTATT
*
72687173 AAATTTTAATAATTTTTAT
1 AAATTTAAATAATTTTTAT
72687192 AACTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
AAATTTAAATAATTTTTATT
Found at i:72687226 original size:10 final size:9
Alignment explanation
Indices: 72687070--72687225 Score: 57
Period size: 9 Copynumber: 16.4 Consensus size: 9
72687060 TTTTGATTCA
72687070 TTTTATAATT
1 TTTTATAA-T
**
72687080 TTTTATTCT
1 TTTTATAAT
72687089 TTTTATAAAAT
1 TTTTAT--AAT
*
72687100 TTTTACAACT
1 TTTTATAA-T
*
72687110 TTTTACAATT
1 TTTTATAA-T
*
72687120 TTTTACAAT
1 TTTTATAAT
* *
72687129 TTATAT-TT
1 TTTTATAAT
*
72687137 TTTTCTAAT
1 TTTTATAAT
*
72687146 TTTTGGTGAA-
1 TTTT-AT-AAT
* *
72687156 ATTTAAATAT
1 TTTTATA-AT
72687166 TTTTATTAAAT
1 TTTTA-T-AAT
*
72687177 TTTAATAAT
1 TTTTATAAT
*
72687186 TTTTATAAC
1 TTTTATAAT
*
72687195 TTTTATTGAT
1 TTTTA-TAAT
*
72687205 TTTT-TATT
1 TTTTATAAT
72687213 TTTTATAAT
1 TTTTATAAT
72687222 TTTT
1 TTTT
72687226 TTGTCACATG
Statistics
Matches: 108, Mismatches: 26, Indels: 25
0.68 0.16 0.16
Matches are distributed among these distances:
8 12 0.11
9 42 0.39
10 39 0.36
11 14 0.13
12 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:72687531 original size:92 final size:88
Alignment explanation
Indices: 72687349--72687585 Score: 246
Period size: 92 Copynumber: 2.6 Consensus size: 88
72687339 TGCATATTGT
* * ** * * *
72687349 AATTGAGTGGAAAAAAAAGTAAAGG-ATTAATTGCTTTTTTTGAAAATTTTTAAGGGTC-TTTTT
1 AATTGAGTGCAAAAAAAAGT-AAGGCCTTAATTGCTTTTTTTTTAAA-GTTTGAGGG-CAATTTT
* *
72687412 GATACATTTTGATAGTTCAAGTACCC
63 GATACATTTTGAAAGTTCAAATACCC
*
72687438 AATTGAGT-TAAAAAAGAAGTAAGGCCTTAATTGCTTCTTCTTTTTTAAATGTTTGAGGGCAATT
1 AATTGAGTGCAAAAAA-AAGTAAGGCCTTAATTGC-T-TT-TTTTTTAAA-GTTTGAGGGCAATT
*
72687502 TTGATGCATTTTGAAAGTTCAAATACCC
61 TTGATACATTTTGAAAGTTCAAATACCC
* * **
72687530 AATTGAGTGCAAATAAAAGTACGGGTTTAATTGCTTTTTTTTTAAAGTTTGAGGGC
1 AATTGAGTGCAAAAAAAAGTAAGGCCTTAATTGCTTTTTTTTTAAAGTTTGAGGGC
72687586 TTTTTACACC
Statistics
Matches: 126, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
88 20 0.16
89 29 0.23
90 3 0.02
91 4 0.03
92 65 0.52
93 5 0.04
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (88 bp):
AATTGAGTGCAAAAAAAAGTAAGGCCTTAATTGCTTTTTTTTTAAAGTTTGAGGGCAATTTTGAT
ACATTTTGAAAGTTCAAATACCC
Found at i:72689731 original size:29 final size:29
Alignment explanation
Indices: 72689697--72689771 Score: 132
Period size: 29 Copynumber: 2.6 Consensus size: 29
72689687 GTCATTAGGG
72689697 ATTATCAGGCACTATGTGCCGGTGTTTAT
1 ATTATCAGGCACTATGTGCCGGTGTTTAT
*
72689726 ATTATCAGGCACTATGTGCTGGTGTTTAT
1 ATTATCAGGCACTATGTGCCGGTGTTTAT
*
72689755 ATTATCAGGTACTATGT
1 ATTATCAGGCACTATGT
72689772 ACTAATACTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (29 bp):
ATTATCAGGCACTATGTGCCGGTGTTTAT
Found at i:72689830 original size:17 final size:17
Alignment explanation
Indices: 72689810--72689846 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
72689800 ACCTATGTTC
*
72689810 ATGTTGTATCAGGGACT
1 ATGTTGAATCAGGGACT
72689827 ATG-TGAATCAGGGACT
1 ATGTTGAATCAGGGACT
72689843 ATGT
1 ATGT
72689847 GTCGGTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (17 bp):
ATGTTGAATCAGGGACT
Found at i:72689838 original size:16 final size:16
Alignment explanation
Indices: 72689817--72689847 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
72689807 TTCATGTTGT
72689817 ATCAGGGACTATGTGA
1 ATCAGGGACTATGTGA
72689833 ATCAGGGACTATGTG
1 ATCAGGGACTATGTG
72689848 TCGGTGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (16 bp):
ATCAGGGACTATGTGA
Found at i:72693618 original size:19 final size:20
Alignment explanation
Indices: 72693581--72693622 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
72693571 TGATAATGAG
*
72693581 AGAAAATGAGAGAAGAAAAA
1 AGAAAATGAGAGAAAAAAAA
*
72693601 AGAAATTGAGA-AAAAAAAA
1 AGAAAATGAGAGAAAAAAAA
72693620 AGA
1 AGA
72693623 TAATAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (20 bp):
AGAAAATGAGAGAAAAAAAA
Found at i:72701687 original size:40 final size:40
Alignment explanation
Indices: 72701593--72701737 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
72701583 TACTCGAATG
*
72701593 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
72701634 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
72701674 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
72701714 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
72701738 CTTGTGCAAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:72705197 original size:13 final size:13
Alignment explanation
Indices: 72705179--72705204 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72705169 ATTAAGTACC
72705179 ATTTTAAATCATA
1 ATTTTAAATCATA
72705192 ATTTTAAATCATA
1 ATTTTAAATCATA
72705205 TTTAGTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTTTAAATCATA
Found at i:72709229 original size:21 final size:21
Alignment explanation
Indices: 72709205--72709246 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
72709195 ATATTTAAAC
72709205 ATAAAATATATGAT-TTTTTAT
1 ATAAAAT-TATGATATTTTTAT
* *
72709226 ATAACATTATTATATTTTTAT
1 ATAAAATTATGATATTTTTAT
72709247 CTTTTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
ATAAAATTATGATATTTTTAT
Found at i:72714350 original size:5 final size:6
Alignment explanation
Indices: 72714335--72714359 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
72714325 CCATATACAA
72714335 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
72714360 TAGATACATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:72720617 original size:46 final size:46
Alignment explanation
Indices: 72720567--72720742 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
72720557 TGGTTGAGCA
72720567 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
72720613 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
72720658 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
72720706 CCCGAGCTCTTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72720743 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.55
47 28 0.26
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:72720733 original size:93 final size:93
Alignment explanation
Indices: 72720564--72720735 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
72720554 GGATGGTTGA
* *
72720564 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
72720629 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
72720657 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAGCTCTTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
*
72720722 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
72720736 CTTATGGGTG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72728566 original size:39 final size:40
Alignment explanation
Indices: 72728489--72728635 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
72728479 TAGCTCCTCG
* * *
72728489 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
72728529 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
72728568 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
72728608 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
72728636 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:72728646 original size:80 final size:80
Alignment explanation
Indices: 72728535--72728715 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
72728525 CTCATTCAAT
* * *
72728535 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
72728598 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
72728614 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
72728678 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
72728695 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
72728716 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:72728675 original size:40 final size:40
Alignment explanation
Indices: 72728532--72728715 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
72728522 TAACTCATTC
* *
72728532 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
72728572 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
72728612 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
72728652 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
72728693 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72728716 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:72733490 original size:118 final size:119
Alignment explanation
Indices: 72733309--72733530 Score: 299
Period size: 118 Copynumber: 1.9 Consensus size: 119
72733299 TACTCGTTCA
*
72733309 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
72733374 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTAGTAACTCGCACC
* * **
72733428 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
72733490 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
72733531 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.73
119 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTAGTAACTCGCACC
Found at i:72733530 original size:40 final size:40
Alignment explanation
Indices: 72733288--72733530 Score: 291
Period size: 40 Copynumber: 6.1 Consensus size: 40
72733278 CGGAATTTAA
** *
72733288 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72733328 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72733368 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72733408 CCGGAT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72733446 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
72733486 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
72733526 CCGGA
1 CCGGA
72733531 CATCATTCGA
Statistics
Matches: 178, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 12 0.07
39 47 0.26
40 107 0.60
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72734718 original size:54 final size:56
Alignment explanation
Indices: 72734654--72734771 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 56
72734644 TATTAGTTTA
72734654 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACAC-A-ATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
72734708 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
72734764 TTGCCCAT
1 TTGCCCAT
72734772 CATCCTTGTC
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
54 35 0.57
55 1 0.02
56 25 0.41
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:72741320 original size:41 final size:41
Alignment explanation
Indices: 72741275--72741405 Score: 99
Period size: 41 Copynumber: 3.1 Consensus size: 41
72741265 AAAACATGTC
72741275 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
* * ** * * * *
72741316 ATAAAGA-GCAT-GGGT-G-GACAAGATGTTATGGCTAAAAACAA
1 ATAAACATG-TTGGGGTAGTG-CATTATG-TAAGGATTAATA-AA
72741357 GTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 ---ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
72741401 ATAAA
1 ATAAA
72741406 GGGCATGGGC
Statistics
Matches: 63, Mismatches: 16, Indels: 22
0.62 0.16 0.22
Matches are distributed among these distances:
38 1 0.02
39 6 0.10
40 13 0.21
41 14 0.22
44 9 0.14
45 13 0.21
46 6 0.10
47 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.27
Consensus pattern (41 bp):
ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
Found at i:72741379 original size:85 final size:85
Alignment explanation
Indices: 72741236--72741414 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
72741226 GGCCGGCCAT
*
72741236 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACAAGTCATAAACATGTTGGGGTAGTGCATTAT
72741301 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
72741321 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACAAGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACAAGTCATAAACATGTTGGGGTAGTGCATTAT
72741386 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
72741406 GGGCATGGG
1 GAGCATGGG
72741415 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACAAGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:72743664 original size:47 final size:47
Alignment explanation
Indices: 72743610--72744023 Score: 612
Period size: 47 Copynumber: 8.6 Consensus size: 47
72743600 GTATATTTGA
72743610 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
72743657 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
72743706 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
72743753 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
*
72743802 ATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
72743849 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTG
* * *
72743900 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* * **
72743947 ATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
72743994 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
72744024 TCTCGAAGGG
Statistics
Matches: 336, Mismatches: 23, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
47 202 0.60
49 90 0.27
51 44 0.13
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:72743718 original size:96 final size:96
Alignment explanation
Indices: 72743610--72744023 Score: 688
Period size: 96 Copynumber: 4.3 Consensus size: 96
72743600 GTATATTTGA
72743610 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
72743675 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
72743706 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
72743771 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
*
72743802 ATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--T
72743867 ATATATATGTGATAAGGCCTAATGGCCGATGTG
64 ATATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
72743900 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * * * **
72743963 ATATATGTGATAGGGCCGAGTGGCCAACATG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
* *
72743994 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
72744024 TCTCGAAGGG
Statistics
Matches: 303, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 54 0.18
96 157 0.52
98 92 0.30
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:72743919 original size:145 final size:145
Alignment explanation
Indices: 72743610--72744012 Score: 618
Period size: 145 Copynumber: 2.8 Consensus size: 145
72743600 GTATATTTGA
* *
72743610 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
72743675 ATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGATAA
64 ATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
72743735 GGCCGAATGGCCAATGTG
128 GGCCGAATGGCCAATGTG
72743753 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
72743818 ATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGTGATAAG
64 ATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGTGATAAG
* *
72743883 GCCTAATGGCCGATGTG
129 GCCGAATGGCCAATGTG
*
72743900 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * ** *
72743965 ATATGTGATAGGGCCGAGTGGCCAACATGATGGATGTGAAAGTGTATA
66 ATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATA
72744013 AATGTGATAA
Statistics
Matches: 241, Mismatches: 12, Indels: 12
0.91 0.05 0.05
Matches are distributed among these distances:
142 2 0.01
143 58 0.24
145 136 0.56
147 45 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (145 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGC
CGAATGGCCAATGTG
Found at i:72745323 original size:40 final size:40
Alignment explanation
Indices: 72745286--72745510 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
72745276 GCTACTCGTT
* *
72745286 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
72745326 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
72745366 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
72745406 CCAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
72745445 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
72745486 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
72745511 CATCATTCGA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 115 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:72745390 original size:80 final size:80
Alignment explanation
Indices: 72745251--72745510 Score: 262
Period size: 80 Copynumber: 3.3 Consensus size: 80
72745241 CCAAATCACG
* * * ** *
72745251 TACCTTCGGAATTTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTA
1 TACCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
72745314 TAGTAACTCGCACAAA
65 TAGTAACTCGCACAAA
*
72745330 TACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-
1 TACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTA
*
72745394 TAGTAACTCGCACCAA
65 TAGTAACTCGCACAAA
* * * * * * *
72745410 TGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATA
1 TACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTA
* * *
72745473 TGGTCACTTAGCACAAA
65 TAGTAAC-TCGCACAAA
* *
72745490 -GCCTTCGGGACTTAGCCCGGA
1 TACCTTCGGGACTTAACCCGGA
72745511 CATCATTCGA
Statistics
Matches: 153, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 4 0.03
79 69 0.45
80 78 0.51
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
TACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
AGTAACTCGCACAAA
Found at i:72745470 original size:119 final size:120
Alignment explanation
Indices: 72745288--72745510 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
72745278 TACTCGTTCA
*
72745288 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* *
72745353 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * * **
72745408 AATGCCTTTGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* * *
72745470 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
72745511 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 65 0.74
120 19 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:72750472 original size:23 final size:23
Alignment explanation
Indices: 72750442--72750489 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
72750432 TACAACCCGA
*
72750442 ATCAGGAAAAGGGTTTGTGATTT
1 ATCAGGAAAAGGGTTCGTGATTT
72750465 ATCAGGAAAAGGGTTCGTGATTT
1 ATCAGGAAAAGGGTTCGTGATTT
72750488 AT
1 AT
72750490 AGCGAGCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.33
Consensus pattern (23 bp):
ATCAGGAAAAGGGTTCGTGATTT
Found at i:72754675 original size:47 final size:47
Alignment explanation
Indices: 72754624--72754728 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
72754614 TAGTATTAAT
*
72754624 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
72754671 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
72754718 AATGTGATAAG
1 TATGTGATAAG
72754729 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:72756852 original size:40 final size:40
Alignment explanation
Indices: 72756794--72756989 Score: 302
Period size: 40 Copynumber: 4.9 Consensus size: 40
72756784 CTCGACGATG
72756794 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * *
72756834 ATTCGGGCTAAATCCCGAAGGGCATTCGTGTCAGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * *
72756874 ATCCAGGCAAAATCCCGGAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* **
72756914 ATCCGGGCTAAATCCCGAAGGGTATTCGTGCCTATGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
72756954 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
72756990 ATGTGTATTC
Statistics
Matches: 137, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 137 1.00
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Done.