Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 231 of 325
Found at i:72763761 original size:57 final size:57
Alignment explanation
Indices: 72763677--72763791 Score: 133
Period size: 57 Copynumber: 2.0 Consensus size: 57
72763667 AAAAATGGTG
* * * *
72763677 AAATGGATAAATAGGAAATATTTGGAAATGATTATGATTTTCTCAAAAAAGAACATGA
1 AAATGGAGAAATA-GAAATATTCGGAAATGAATATGATTTTCTCAAAAAAGAAAATGA
* * * *
72763735 AAATGGAGAAAT-GAAATCATTCGGAAATGAATGTGGTTTTCTCCAAAATGAAAATGA
1 AAATGGAGAAATAGAAAT-ATTCGGAAATGAATATGATTTTCTCAAAAAAGAAAATGA
72763792 CTTAAAAAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
56 5 0.10
57 32 0.67
58 11 0.23
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (57 bp):
AAATGGAGAAATAGAAATATTCGGAAATGAATATGATTTTCTCAAAAAAGAAAATGA
Found at i:72767186 original size:29 final size:29
Alignment explanation
Indices: 72767151--72767207 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
72767141 GAACATAGTA
*
72767151 AAATTTCATGGAAGTATTGTGAAATGATG
1 AAATTTCATGGAAATATTGTGAAATGATG
*
72767180 AAATTTCATGTAAATATTGTGAAATGAT
1 AAATTTCATGGAAATATTGTGAAATGAT
72767208 AATAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.37
Consensus pattern (29 bp):
AAATTTCATGGAAATATTGTGAAATGATG
Found at i:72768615 original size:39 final size:40
Alignment explanation
Indices: 72768572--72768683 Score: 104
Period size: 38 Copynumber: 2.8 Consensus size: 40
72768562 TCGGATAGTT
*
72768572 CAAAGTAATAGTTGACACCCAGTGTCTCATCG-GCCTAGC
1 CAAAGTAATAGTTGACACCCAGTGTCTCATCGAACCTAGC
** ** * *
72768611 CAAAGTAA-AGTTGGTACCCAGTACCTCATCGAATCTATC
1 CAAAGTAATAGTTGACACCCAGTGTCTCATCGAACCTAGC
* *
72768650 CGAAGAAATA-TAGTGACACCCAGTGTCTCATCGA
1 CAAAGTAATAGT--TGACACCCAGTGTCTCATCGA
72768684 CTCGAGGTCG
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
38 19 0.34
39 19 0.34
40 1 0.02
41 17 0.30
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (40 bp):
CAAAGTAATAGTTGACACCCAGTGTCTCATCGAACCTAGC
Found at i:72770193 original size:24 final size:24
Alignment explanation
Indices: 72770129--72770194 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
72770119 TATCCATTAA
* *
72770129 ATAATCATAA-TAATTATAAAACC
1 ATAATAATAATTAAATATAAAACC
**
72770152 ATAATAATAATTTTATATAAAACC
1 ATAATAATAATTAAATATAAAACC
*
72770176 ATGATAATAATTAAATATA
1 ATAATAATAATTAAATATA
72770195 TATAATACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
23 9 0.26
24 26 0.74
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.35
Consensus pattern (24 bp):
ATAATAATAATTAAATATAAAACC
Found at i:72796938 original size:28 final size:28
Alignment explanation
Indices: 72796906--72797033 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
72796896 ATAGTAAGTC
*
72796906 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72796934 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
72796963 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
72796991 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72797020 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72797034 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72796996 original size:57 final size:57
Alignment explanation
Indices: 72796905--72797033 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
72796895 TATAGTAAGT
*
72796905 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
72796962 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
72797019 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
72797034 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:72804933 original size:28 final size:28
Alignment explanation
Indices: 72804901--72805028 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
72804891 ATAGTAAGTC
*
72804901 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72804929 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
72804958 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
72804986 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72805015 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72805029 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72804991 original size:57 final size:57
Alignment explanation
Indices: 72804900--72805028 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
72804890 TATAGTAAGT
*
72804900 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
72804957 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
72805014 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
72805029 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:72820801 original size:17 final size:17
Alignment explanation
Indices: 72820781--72820826 Score: 60
Period size: 16 Copynumber: 2.7 Consensus size: 17
72820771 TAAGATGATA
72820781 ATATTTAATATATAA-TT
1 ATATTTAAT-TATAATTT
72820798 ATATTT-ATTATAATTT
1 ATATTTAATTATAATTT
72820814 ATATATTAATTAT
1 ATAT-TTAATTAT
72820827 TATCAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.19
16 8 0.31
17 8 0.31
18 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATTTAATTATAATTT
Found at i:72820907 original size:17 final size:18
Alignment explanation
Indices: 72820881--72820914 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72820871 TTTTTGTTTA
72820881 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
72820898 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
72820915 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:72836644 original size:45 final size:47
Alignment explanation
Indices: 72836593--72836684 Score: 116
Period size: 49 Copynumber: 2.0 Consensus size: 47
72836583 CATATATAAC
* * * *
72836593 TACACTTCTTTTATTT-TATT-TTAGAATAAGGTTTTTTAACCTTGT
1 TACACTTCATCTATTTATATTATTAGAATAAGGTGTTTCAACCTTGT
72836638 TACACTTCATCTATTTGATATTGATTAGAATAAGGTGTTTCAACCTT
1 TACACTTCATCTATTT-ATATT-ATTAGAATAAGGTGTTTCAACCTT
72836685 ACTACACTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
45 14 0.36
47 4 0.10
49 21 0.54
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.49
Consensus pattern (47 bp):
TACACTTCATCTATTTATATTATTAGAATAAGGTGTTTCAACCTTGT
Found at i:72844124 original size:5 final size:5
Alignment explanation
Indices: 72844114--72844138 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
72844104 ACTACACTTC
72844114 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
72844139 GAATAAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:72845221 original size:29 final size:30
Alignment explanation
Indices: 72845189--72845247 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
72845179 TAATGTGTAT
* *
72845189 AATTG-CATCAAATTAAAGTTCATGTATAC
1 AATTGACATCAAACTAAAATTCATGTATAC
*
72845218 AATTGCACATTAAACTAAAATTCATGTATA
1 AATTG-ACATCAAACTAAAATTCATGTATA
72845248 ATTTTGATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.20
31 20 0.80
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (30 bp):
AATTGACATCAAACTAAAATTCATGTATAC
Found at i:72845250 original size:29 final size:27
Alignment explanation
Indices: 72845184--72845250 Score: 71
Period size: 31 Copynumber: 2.3 Consensus size: 27
72845174 AAGTTTAATG
* *
72845184 TGTATAATTGCATCAAATTAAAGTTCA
1 TGTATAATTGCATCAAACTAAAATTCA
*
72845211 TGTATACAATTGCACATTAAACTAAAATTCA
1 TGTAT--AATTG--CATCAAACTAAAATTCA
72845242 TGTATAATT
1 TGTATAATT
72845251 TTGATATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 5 0.15
29 9 0.27
31 19 0.58
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (27 bp):
TGTATAATTGCATCAAACTAAAATTCA
Found at i:72850301 original size:121 final size:121
Alignment explanation
Indices: 72850155--72850399 Score: 481
Period size: 121 Copynumber: 2.0 Consensus size: 121
72850145 TAATAAAGAT
72850155 AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCCATGTTGAATTAATATTGAACATT
1 AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCCATGTTGAATTAATATTGAACATT
72850220 TAAATCATCATAATTATACTTACTTTCAACACATCGGCAATCATAGTAAATATATC
66 TAAATCATCATAATTATACTTACTTTCAACACATCGGCAATCATAGTAAATATATC
72850276 AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCCATGTTGAATTAATATTGAACATT
1 AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCCATGTTGAATTAATATTGAACATT
*
72850341 TAAATCATCATAATTATACTTACTTTCAACACCTCGGCAATCATAGTAAATATATC
66 TAAATCATCATAATTATACTTACTTTCAACACATCGGCAATCATAGTAAATATATC
72850397 AAT
1 AAT
72850400 TTTACATTGA
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 123 1.00
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.40
Consensus pattern (121 bp):
AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCCATGTTGAATTAATATTGAACATT
TAAATCATCATAATTATACTTACTTTCAACACATCGGCAATCATAGTAAATATATC
Found at i:72855580 original size:24 final size:23
Alignment explanation
Indices: 72855522--72855580 Score: 55
Period size: 26 Copynumber: 2.4 Consensus size: 23
72855512 TAAAAATTTT
72855522 AAAATTAATAAGAAATAAAAAAA
1 AAAATTAATAAGAAATAAAAAAA
* * *
72855545 ATAAATTGTAATAATAGAATACAAATA
1 A-AAA-T-TAATAAGA-AATAAAAAAA
72855572 AAAATTAAT
1 AAAATTAAT
72855581 CAATTTATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
23 1 0.03
24 7 0.24
25 2 0.07
26 10 0.34
27 9 0.31
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (23 bp):
AAAATTAATAAGAAATAAAAAAA
Found at i:72856367 original size:19 final size:18
Alignment explanation
Indices: 72856348--72856419 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 18
72856338 ACAAGTTTTA
72856348 ATAAAATTATAAAAAATT
1 ATAAAATTATAAAAAATT
* *
72856366 A-AAAATAATAAAAATTTT
1 ATAAAATTATAAAAA-ATT
* *
72856384 GTAAAATTTTATAAAAATT
1 ATAAAATTATA-AAAAATT
72856403 ATAAAATGTATTAAAAA
1 ATAAAAT-TA-TAAAAA
72856420 GACCTTTAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
17 12 0.29
18 3 0.07
19 15 0.37
20 9 0.22
21 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
ATAAAATTATAAAAAATT
Found at i:72856621 original size:19 final size:18
Alignment explanation
Indices: 72856598--72856660 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 18
72856588 TTTTTACGAA
*
72856598 TTTTATAATATTTTCTAT
1 TTTTATAATATTTTATAT
72856616 TGTTTAT-AT-TTTTATAT
1 T-TTTATAATATTTTATAT
*
72856633 TTTTATTAATATTTAATATT
1 TTTTA-TAATATTTTATA-T
72856653 TTTTATAA
1 TTTTATAA
72856661 CTTTTATTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
16 4 0.11
17 9 0.24
18 5 0.13
19 14 0.37
20 6 0.16
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTATAATATTTTATAT
Found at i:72856647 original size:26 final size:26
Alignment explanation
Indices: 72856618--72856690 Score: 76
Period size: 29 Copynumber: 2.7 Consensus size: 26
72856608 TTTTCTATTG
72856618 TTTATATTTTTATATTTTTATTAATA
1 TTTATATTTTTATATTTTTATTAATA
* * *
72856644 TTTAATATTTTTTATAACTTTTATTGATT
1 TTT-ATA-TTTTTAT-ATTTTTATTAATA
*
72856673 TTTAT-TTTTTATTTTTTT
1 TTTATATTTTTATATTTTT
72856691 GTCACATGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
25 4 0.10
26 10 0.26
27 3 0.08
28 9 0.23
29 13 0.33
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.73
Consensus pattern (26 bp):
TTTATATTTTTATATTTTTATTAATA
Found at i:72856658 original size:36 final size:39
Alignment explanation
Indices: 72856598--72856678 Score: 98
Period size: 36 Copynumber: 2.2 Consensus size: 39
72856588 TTTTTACGAA
** *
72856598 TTTTA-TAATATTTTCTATTGTTTAT-ATTTTTA-T-AT
1 TTTTATTAATATTTAATATTGTTTATAACTTTTATTGAT
*
72856633 TTTTATTAATATTTAATATTTTTTATAACTTTTATTGAT
1 TTTTATTAATATTTAATATTGTTTATAACTTTTATTGAT
72856672 TTTTATT
1 TTTTATT
72856679 TTTTATTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
35 5 0.13
36 17 0.45
37 6 0.16
38 1 0.03
39 9 0.24
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (39 bp):
TTTTATTAATATTTAATATTGTTTATAACTTTTATTGAT
Found at i:72857188 original size:16 final size:16
Alignment explanation
Indices: 72857169--72857201 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
72857159 AGTATTTTTT
72857169 TTTCTAAACTCACTAA
1 TTTCTAAACTCACTAA
*
72857185 TTTCTAAATTCACTAA
1 TTTCTAAACTCACTAA
72857201 T
1 T
72857202 AGCTTTCCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (16 bp):
TTTCTAAACTCACTAA
Found at i:72857278 original size:40 final size:41
Alignment explanation
Indices: 72857185--72857282 Score: 189
Period size: 41 Copynumber: 2.4 Consensus size: 41
72857175 AACTCACTAA
72857185 TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTATATTT
1 TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTATATTT
72857226 TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTAT-TTT
1 TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTATATTT
72857266 TTTCTAAATTCACTAAT
1 TTTCTAAATTCACTAAT
72857283 TTCATAACCT
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 20 0.35
41 37 0.65
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (41 bp):
TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTATATTT
Found at i:72860680 original size:26 final size:26
Alignment explanation
Indices: 72860571--72860672 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
72860561 CATGAAATTC
72860571 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
72860597 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
72860623 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
72860649 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
72860673 TTTTATCAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:72866511 original size:26 final size:26
Alignment explanation
Indices: 72866402--72866503 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
72866392 CATGAAATTC
72866402 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
72866428 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
72866454 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
72866480 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
72866504 TTTTATCAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:72867224 original size:16 final size:16
Alignment explanation
Indices: 72867203--72867240 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
72867193 ATCTTCAGAC
72867203 TTGAATTATTTTAAGT
1 TTGAATTATTTTAAGT
72867219 TTGAATTATTTTAAGT
1 TTGAATTATTTTAAGT
72867235 TTGAAT
1 TTGAAT
72867241 CAACTCGTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (16 bp):
TTGAATTATTTTAAGT
Found at i:72868225 original size:15 final size:17
Alignment explanation
Indices: 72868200--72868241 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
72868190 GCGACTCTAC
72868200 TAATA-ATTTTTT-AT-
1 TAATATATTTTTTAATA
72868214 TAATATATTTTTTAATA
1 TAATATATTTTTTAATA
*
72868231 TAAAATATTTT
1 TAATATATTTT
72868242 ATTTCATCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 5 0.21
15 7 0.29
16 2 0.08
17 10 0.42
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TAATATATTTTTTAATA
Found at i:72869184 original size:6 final size:6
Alignment explanation
Indices: 72869173--72869201 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
72869163 GGTGTTGCAT
72869173 GAGCAG GAGCAG GAGCAG GAGCAG GAGCA
1 GAGCAG GAGCAG GAGCAG GAGCAG GAGCA
72869202 TGAGAATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.48, T:0.00
Consensus pattern (6 bp):
GAGCAG
Found at i:72871056 original size:23 final size:21
Alignment explanation
Indices: 72871016--72871077 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 21
72871006 TTAGTTAAAA
* *
72871016 AATTTACGTAAAATAAAAGTGAT
1 AATTTACATTAAA-AAAA-TGAT
*
72871039 AATTATACATTTAAAAAAATTAT
1 AATT-TACA-TTAAAAAAATGAT
72871062 AATTTACATTAAAAAA
1 AATTTACATTAAAAAA
72871078 TAATTAGAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 8 0.24
22 4 0.12
23 11 0.32
24 7 0.21
25 4 0.12
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (21 bp):
AATTTACATTAAAAAAATGAT
Found at i:72871082 original size:23 final size:22
Alignment explanation
Indices: 72871037--72871098 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
72871027 AATAAAAGTG
*
72871037 ATAATTATACATTTAAAAAAATT
1 ATAATT-TACATTAAAAAAAATT
72871060 ATAATTTACATTAAAAAATAATT
1 ATAATTTACATTAAAAAA-AATT
*
72871083 AGAATTT-CA-TAAAAAA
1 ATAATTTACATTAAAAAA
72871099 GTATGGTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.19
22 13 0.36
23 16 0.44
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (22 bp):
ATAATTTACATTAAAAAAAATT
Found at i:72874727 original size:23 final size:24
Alignment explanation
Indices: 72874701--72874757 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
72874691 CACCAAAAGG
*
72874701 TTATTTTATTGTTAAAACTA-AT-A
1 TTATTTTATTG-TAAAAATATATAA
*
72874724 TTATTTAATTGTAAAAATATATAA
1 TTATTTTATTGTAAAAATATATAA
*
72874748 ATATTTTATT
1 TTATTTTATT
72874758 TATAAACAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 7 0.25
23 12 0.43
24 9 0.32
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
TTATTTTATTGTAAAAATATATAA
Found at i:72883208 original size:20 final size:20
Alignment explanation
Indices: 72883121--72883208 Score: 83
Period size: 20 Copynumber: 4.4 Consensus size: 20
72883111 TTTATATTCG
*
72883121 TATAAACTA-TAATTCATTCA
1 TATAAAC-AGTAATTCATCCA
* *
72883141 TATAACCAGTAGTTCAT-CA
1 TATAAACAGTAATTCATCCA
*
72883160 GTA-ATAACAGTAATTCATCCG
1 -TATA-AACAGTAATTCATCCA
*
72883181 TATCAACAGTAATTCATCCA
1 TATAAACAGTAATTCATCCA
72883201 TATAAACA
1 TATAAACA
72883209 CATATCTTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
19 4 0.07
20 50 0.91
21 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (20 bp):
TATAAACAGTAATTCATCCA
Found at i:72883411 original size:23 final size:23
Alignment explanation
Indices: 72883354--72883490 Score: 109
Period size: 23 Copynumber: 5.8 Consensus size: 23
72883344 GCCATGATCG
*
72883354 GTAAGCTCCTCTTGAGCTGATGAACA
1 GTAAGCT-CTATTGAGCTGA--AACA
*
72883380 GTAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCTATTGAGCTGAAACA
** *
72883403 GTAAGCTCTATCAAGCTG-AATA
1 GTAAGCTCTATTGAGCTGAAACA
* *
72883425 GTAAGCTC-ATACGAGTTGAAACA
1 GTAAGCTCTAT-TGAGCTGAAACA
* * *
72883448 GTAAGCTCCAATGAGCTGAAAATA
1 GTAAGCTCTATTGAGCTG-AAACA
72883472 GTAAGCTCT-TATGAGCTGA
1 GTAAGCTCTAT-TGAGCTGA
72883491 TATATCGGTA
Statistics
Matches: 91, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
21 2 0.02
22 15 0.16
23 36 0.40
24 20 0.22
25 11 0.12
26 7 0.08
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:72883453 original size:68 final size:71
Alignment explanation
Indices: 72883376--72883512 Score: 174
Period size: 68 Copynumber: 1.9 Consensus size: 71
72883366 TGAGCTGATG
* * *
72883376 AACAGTAAGCTCTATTGAGCTG-AAACGGTAAGCTC-TATCAAGCTGA-ATA-GTAAGCTCATAC
1 AACAGTAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTAT-AAGCTGATATACGTAAGCTCATAC
72883437 GAGTTGA
65 GAGTTGA
* *
72883444 AACAGTAAGCTCCAATGAGCTGAAAATAGTAAGCTCTTATGAGCTGATATATCGGTAAGCTCATA
1 AACAGTAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTATAAGCTGATATA-C-GTAAGCTCATA
72883509 CGAG
64 CGAG
72883513 CTGTGGTGAG
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
68 20 0.34
69 17 0.29
70 6 0.10
73 15 0.26
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (71 bp):
AACAGTAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTATAAGCTGATATACGTAAGCTCATACG
AGTTGA
Found at i:72883478 original size:24 final size:24
Alignment explanation
Indices: 72883421--72883490 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 24
72883411 TATCAAGCTG
* *
72883421 AATAGTAAGCT-CATACGAGTTG-A
1 AATAGTAAGCTCCA-ATGAGCTGAA
*
72883444 AACAGTAAGCTCCAATGAGCTGAA
1 AATAGTAAGCTCCAATGAGCTGAA
**
72883468 AATAGTAAGCTCTTATGAGCTGA
1 AATAGTAAGCTCCAATGAGCTGA
72883491 TATATCGGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
23 16 0.41
24 23 0.59
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (24 bp):
AATAGTAAGCTCCAATGAGCTGAA
Found at i:72886852 original size:19 final size:19
Alignment explanation
Indices: 72886808--72886871 Score: 96
Period size: 19 Copynumber: 3.4 Consensus size: 19
72886798 ACCATGTTCA
72886808 TATTTTTA-ACATGATTTAAT
1 TATTTTTATA-AT-ATTTAAT
72886828 TA-TTTTATAATATTTAAT
1 TATTTTTATAATATTTAAT
72886846 TATTTTTATAATATTTAAT
1 TATTTTTATAATATTTAAT
72886865 TATTTTT
1 TATTTTT
72886872 CAACAAGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.21
19 30 0.71
20 3 0.07
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTTTTATAATATTTAAT
Found at i:72888261 original size:12 final size:12
Alignment explanation
Indices: 72888244--72888270 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
72888234 AATATTTATT
72888244 GTACAATACTAA
1 GTACAATACTAA
72888256 GTACAATACTAA
1 GTACAATACTAA
72888268 GTA
1 GTA
72888271 TTTATATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.26
Consensus pattern (12 bp):
GTACAATACTAA
Found at i:72894081 original size:48 final size:48
Alignment explanation
Indices: 72893979--72894341 Score: 260
Period size: 46 Copynumber: 7.7 Consensus size: 48
72893969 TTTGTGCACC
* * *
72893979 AGTGTAAGA-CATGTCTGGGACAT-GC-TCCGGCCA-C-ATTATAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCAT-CGG-CATCGA-GATGAGAGCT
* * * *
72894025 AGTGTAAGACCATGTTTGGGACATGGCATCGGTATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCT
*
72894073 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATG-AGAGCT
* *
72894119 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACGAGATGTG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGATGAGAGCT
* * *
72894163 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CG-TAT-AGAGGTGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGA-G-CT
* * *
72894210 CAGTGTAAGACCGTGTCTGGGACATGGCATCGGCA-CGGATATATGAAAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-G--AGATGAGAGCT
* ** * ** *
72894261 AGTGTAAGACCATGTTTGGGACATGGTGTCGGCCTCGATTTCGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAT-GAGAGCT
72894309 CAGTGTAAGACCATGTCTGGGAGC-TGGCATCGG
1 -AGTGTAAGACCATGTCTGGGA-CATGGCATCGG
72894342 TATTATACCC
Statistics
Matches: 259, Mismatches: 33, Indels: 47
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.00
44 11 0.04
45 17 0.07
46 72 0.28
47 28 0.11
48 57 0.22
49 34 0.13
50 31 0.12
51 2 0.01
52 4 0.02
53 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCT
Found at i:72894293 original size:98 final size:99
Alignment explanation
Indices: 72893979--72894341 Score: 263
Period size: 94 Copynumber: 3.8 Consensus size: 99
72893969 TTTGTGCACC
* * *
72893979 AGTGTAAGA-CATGTCTGGGACAT-GC-TCCGGCCAC-ATTATA-AGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTTTGGGACATGGCAT-CGGCCACGA-TATAGATAGTCAGTGTAAGACCATG
* * ** * * *
72894039 TTTGGGA-CATGGCATCGGTATTG--AGACGAGAGCT
64 TCTGGGAGC-TGGCATCGGCACGGATATATGAAAGCT
* * *
72894073 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-G-TAAG-CTAGTGTAAGA-CATG
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATAGAT-AGTC-AGTGTAAGACCATG
* * *
72894132 TCTGGGA-CAT-GCATCGGCTAC-GAGATGTG---TC-
64 TCTGGGAGC-TGGCATCGGC-ACGGATATATGAAAGCT
*
72894163 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CACG-TATAGAGGT-GTCAGTGTAAGACCGTG
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATAGA--TAGTCAGTGTAAGACCATG
72894225 TCTGGGA-CATGGCATCGGCACGGATATATGAAAGCT
64 TCTGGGAGC-TGGCATCGGCACGGATATATGAAAGCT
** * * *
72894261 AGTGTAAGACCATGTTTGGGACATGGTGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATAGATAGTCAGTGTAAGACCATGTC
72894326 TGGGAGCTGGCATCGG
66 TGGGAGCTGGCATCGG
72894342 TATTATACCC
Statistics
Matches: 220, Mismatches: 23, Indels: 47
0.76 0.08 0.16
Matches are distributed among these distances:
90 11 0.05
91 18 0.08
92 25 0.11
93 31 0.14
94 61 0.28
95 2 0.01
97 1 0.00
98 31 0.14
99 35 0.16
100 5 0.02
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (99 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATAGATAGTCAGTGTAAGACCATGTC
TGGGAGCTGGCATCGGCACGGATATATGAAAGCT
Found at i:72894340 original size:99 final size:97
Alignment explanation
Indices: 72894024--72894341 Score: 263
Period size: 99 Copynumber: 3.3 Consensus size: 97
72894014 TTATAAGAGC
* * ** * * *
72894024 CAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTG--AGACGAGAGCTAGTGTAAGA-CATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATATGAAAGCTAGTGTAAGACCATG
* **
72894086 TCTGGGACAT-GCATCGGC-C-TCGAGA-TGT
66 TTTGGGACATGGCATCGGCACGTATAGAGTGT
* * *
72894114 AAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-GAGATGTG---TC-AGTGTAAGA
1 ---C-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGGATATATGAAAGCTAGTGTAAGA
72894172 CCATGTTTGGGACATGGCATCGGCACGTATAGAGGTGT
61 CCATGTTTGGGACATGGCATCGGCACGTATAGA-GTGT
*
72894210 CAGTGTAAGACCGTGTCTGGGACATGGCATCGGCACGGATATATGAAAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATATGAAAGCTAGTGTAAGACCATG
** * * *
72894275 TTTGGGACATGGTGTCGGCCTCGATTTCGA-TAGT
66 TTTGGGACATGGCATCGG-CACG-TATAGAGT-GT
72894309 CAGTGTAAGACCATGTCTGGGAGC-TGGCATCGG
1 CAGTGTAAGACCATGTCTGGGA-CATGGCATCGG
72894342 TATTATACCC
Statistics
Matches: 184, Mismatches: 20, Indels: 36
0.77 0.08 0.15
Matches are distributed among these distances:
90 9 0.05
91 14 0.08
92 25 0.14
93 32 0.17
94 29 0.16
96 3 0.02
97 1 0.01
98 31 0.17
99 35 0.19
100 5 0.03
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (97 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATATGAAAGCTAGTGTAAGACCATG
TTTGGGACATGGCATCGGCACGTATAGAGTGT
Found at i:72898713 original size:40 final size:40
Alignment explanation
Indices: 72898669--72898900 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
72898659 ATAACCACAA
72898669 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
72898709 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
72898749 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
72898789 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
72898829 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
72898869 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
72898901 CATTCAAATG
Statistics
Matches: 163, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.04
40 150 0.92
41 7 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:72898776 original size:80 final size:80
Alignment explanation
Indices: 72898649--72898899 Score: 423
Period size: 80 Copynumber: 3.1 Consensus size: 80
72898639 TCTTCGGAAT
* * * * * * *
72898649 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
72898713 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
72898728 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
72898793 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
72898808 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
72898873 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
72898888 TTAGCCCGGATA
1 TTAGCCCGGATA
72898900 TCATTCAAAT
Statistics
Matches: 162, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 4 0.02
80 158 0.98
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:72906711 original size:40 final size:40
Alignment explanation
Indices: 72906667--72906897 Score: 306
Period size: 40 Copynumber: 5.8 Consensus size: 40
72906657 ATAACCACAA
72906667 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
72906707 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT-
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * * *
72906746 ACACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
72906786 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
72906826 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
72906866 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
72906898 CATTCAAATG
Statistics
Matches: 161, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 120 0.75
41 7 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:72906869 original size:80 final size:80
Alignment explanation
Indices: 72906647--72906896 Score: 414
Period size: 80 Copynumber: 3.1 Consensus size: 80
72906637 TCTTCGGAAT
* * * * * * *
72906647 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
72906711 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
72906726 TTAGCCCGGATAAAATCACTA-CACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
72906790 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
72906805 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
72906870 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
72906885 TTAGCCCGGATA
1 TTAGCCCGGATA
72906897 TCATTCAAAT
Statistics
Matches: 160, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
79 78 0.49
80 82 0.51
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:72911195 original size:14 final size:16
Alignment explanation
Indices: 72911176--72911214 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
72911166 AAGAAAATGA
*
72911176 TGATATATGACA-A-G
1 TGATATATGAAATAGG
72911190 TGATATATGAAATAGG
1 TGATATATGAAATAGG
72911206 TGATATATG
1 TGATATATG
72911215 TTATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (16 bp):
TGATATATGAAATAGG
Found at i:72915885 original size:13 final size:14
Alignment explanation
Indices: 72915867--72915895 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72915857 AAGTGATTTA
72915867 AAGGTT-AATTAGT
1 AAGGTTAAATTAGT
72915880 AAGGTTAAATTAGT
1 AAGGTTAAATTAGT
72915894 AA
1 AA
72915896 TTCAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (14 bp):
AAGGTTAAATTAGT
Found at i:72916841 original size:20 final size:21
Alignment explanation
Indices: 72916816--72916855 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72916806 CTCTTGAAAC
72916816 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
* *
72916836 AGGGCAACATGCCTGTGTGG
1 AGGGCAACACGCCCGTGTGG
72916856 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:72918097 original size:47 final size:47
Alignment explanation
Indices: 72918028--72918389 Score: 219
Period size: 47 Copynumber: 7.7 Consensus size: 47
72918018 GGTATAATAC
* *
72918028 CGATGCCATATCCCAGAGATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * *
72918075 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCGAAATCGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--CATCAAGT
** * * **
72918123 CTGACACCTTGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCCGTGT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-C--AT-CAAGT
* * * * * *
72918174 CGATGCCATGTCTCAGACATGGTCTTACACTGACACCTCTAT-ACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * * ** *
72918220 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACAT-CTTGTAGC
1 --CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * * *
72918268 CGATG-CATGTCCCATACAT-GTCTTACACTAGCTCTTTTC-TCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ATCCATCAA-GT
* * *
72918314 CGAAG-CATGTCCTAGACATGGTCTTACAGTGGCTC-T-CAT-AATGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA----GT
*
72918361 CGATG-CATGTCCCAGACAT-ATCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
72918390 AGCACACATA
Statistics
Matches: 249, Mismatches: 47, Indels: 39
0.74 0.14 0.12
Matches are distributed among these distances:
44 15 0.06
45 18 0.07
46 36 0.14
47 66 0.27
48 46 0.18
49 32 0.13
50 30 0.12
51 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:72918240 original size:48 final size:48
Alignment explanation
Indices: 72918027--72918296 Score: 216
Period size: 48 Copynumber: 5.7 Consensus size: 48
72918017 GGGTATAATA
* * * * * *
72918027 CCGATGCCATATCCCAGAGATGGTCTTACACTGGCTCATCCATCAAGT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTAT-ACGTG
* * * * *
72918075 -CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TATCGAAATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATA-CG-TG
* ** * * * *
72918123 CTGACACCTTGTCCCAGACATGGTCTTACACTAGCTCTCA-CATATCCGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATC-TATACGTG
* * *
72918173 TCGATGCCATGTCTCAGACATGGTCTTACACTGACACCTCTATACGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACGTG
72918221 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCT-T--GTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACGT-G
*
72918267 CCGATG-CATGTCCCATACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
72918297 AGCTCTTTTC
Statistics
Matches: 181, Mismatches: 31, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
44 10 0.06
45 16 0.09
46 12 0.07
47 33 0.18
48 47 0.26
49 29 0.16
50 28 0.15
51 4 0.02
52 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACGTG
Found at i:72920429 original size:16 final size:16
Alignment explanation
Indices: 72920408--72920446 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
72920398 GTTTGGTTCA
*
72920408 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
72920424 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
72920440 CTGTAAT
1 CTGTAAT
72920447 CAGTAATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:72920705 original size:17 final size:17
Alignment explanation
Indices: 72920680--72920712 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
72920670 AATTATTATT
72920680 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
*
72920697 AAATTTAATTTAATAA
1 AAATATAATTTAATAA
72920713 CATTCTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:72920732 original size:55 final size:51
Alignment explanation
Indices: 72920619--72920735 Score: 146
Period size: 52 Copynumber: 2.2 Consensus size: 51
72920609 ATTAAATAAG
* *
72920619 ATTATTATTGAAAATAATTTAATAATAAATAATTTAACTATATTTTAACATA
1 ATTATTATT-AAAATAATTTAATAAAAAATAATTTAACTACATTTTAACATA
*
72920671 ATTATTATTAAATATAATTTAATAAAAAATTTAATTTAA-TAACATTCTTAATATA
1 ATTATTATTAAA-ATAATTTAATAAAAAA--TAATTTAACT-ACATT-TTAACATA
72920726 ATTATTATTA
1 ATTATTATTA
72920736 TATGAATTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
51 3 0.05
52 24 0.42
53 1 0.02
54 12 0.21
55 17 0.30
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (51 bp):
ATTATTATTAAAATAATTTAATAAAAAATAATTTAACTACATTTTAACATA
Found at i:72921181 original size:43 final size:43
Alignment explanation
Indices: 72921120--72921204 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
72921110 TACAAATACA
72921120 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
1 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
* *
72921163 TAAGGCAACCAATTTGATGTCTTTTCTAACTTGATACCCAAC
1 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAAC
72921205 TAATTCCTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (43 bp):
TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
Found at i:72924385 original size:3 final size:3
Alignment explanation
Indices: 72924377--72924402 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
72924367 ACACTTAAAA
72924377 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
72924403 TAATAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:72925434 original size:68 final size:70
Alignment explanation
Indices: 72925312--72925470 Score: 205
Period size: 68 Copynumber: 2.3 Consensus size: 70
72925302 GGATAGAAGC
*
72925312 ATGAAAAAGAGAGAGATGGATGGAAGGAAATGGGAAGAAGAATGAAAAAAAGAAGATGATTAAGA
1 ATGAAAAAGAG-GAGAAGGATGGAAGGAAATGGG-AGAAGAATGAAAAAAAGAAGATGATTAAGA
*
72925377 TGTGACA
64 CGTGACA
* * * *
72925384 ATGAAAAAGAGGAGAAGGTTGGAAGGAAAT-GG-GAAGAATGAAAAAAAGAAGTTGCTTCAGACG
1 ATGAAAAAGAGGAGAAGGATGGAAGGAAATGGGAGAAGAATGAAAAAAAGAAGATGATTAAGACG
*
72925447 TGAGA
66 TGACA
*
72925452 ACGAAAAAGAGGGAGAAGG
1 ATGAAAAAGA-GGAGAAGG
72925471 GTAAAGTTGA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
68 40 0.51
69 8 0.10
70 2 0.03
71 17 0.22
72 11 0.14
ACGTcount: A:0.50, C:0.03, G:0.34, T:0.13
Consensus pattern (70 bp):
ATGAAAAAGAGGAGAAGGATGGAAGGAAATGGGAGAAGAATGAAAAAAAGAAGATGATTAAGACG
TGACA
Found at i:72928716 original size:42 final size:42
Alignment explanation
Indices: 72928669--72928878 Score: 188
Period size: 49 Copynumber: 4.7 Consensus size: 42
72928659 CATTTTCTTA
** * *
72928669 ATGCCATAGTTCAACTATGGTCTTACACATCTTCATATAAT-G
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCATAT-ATCG
72928711 ATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATCG
*
72928753 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCATATATCG
* * *
72928802 ATGCCATAACCCAGCTATGGTCTTACATGTAATCACATATCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTAC-----A-CATAT-TCATATATCG
* *
72928851 ATGCCATAACCCAGCTTTGGTCTTACAC
1 ATGCCATAGCCCAGCTATGGTCTTACAC
72928879 GAATCACATA
Statistics
Matches: 146, Mismatches: 8, Indels: 27
0.81 0.04 0.15
Matches are distributed among these distances:
41 2 0.01
42 63 0.43
43 1 0.01
44 1 0.01
45 2 0.01
48 2 0.01
49 72 0.49
52 1 0.01
54 1 0.01
55 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATCG
Found at i:72928742 original size:36 final size:41
Alignment explanation
Indices: 72928669--72928921 Score: 166
Period size: 49 Copynumber: 5.6 Consensus size: 41
72928659 CATTTTCTTA
** * *
72928669 ATGCCATAGTTCAACTATGGTCTTACACATCTTCATATAAT-G
1 ATGCCATAGCCCAGCTATGGTCTTACACA-ATTCATAT-ATCG
72928711 ATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACA-ATTCATATATCG
*
72928753 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTT--AC---A-CA-AT-TCATATATCG
* *
72928802 ATGCCATAACCCAGCTATGGTCTTACATGTAATCACATATCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTAC-----A-CA-AT-TCATATATCG
* * * *
72928851 ATGCCATAACCCAGCTTTGGTCTTACACGAATCACATATCTCACTG
1 ATGCCATAGCCCAGCTATGGTCTTACAC-AAT-TCATATAT--C-G
* *
72928897 ATGCCATATCCCAGATATGGTCTTA
1 ATGCCATAGCCCAGCTATGGTCTTA
72928922 TACAGTAGCA
Statistics
Matches: 182, Mismatches: 15, Indels: 24
0.82 0.07 0.11
Matches are distributed among these distances:
41 2 0.01
42 59 0.32
43 8 0.04
44 4 0.02
45 1 0.01
46 23 0.13
47 3 0.02
48 4 0.02
49 78 0.43
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (41 bp):
ATGCCATAGCCCAGCTATGGTCTTACACAATTCATATATCG
Found at i:72928809 original size:49 final size:49
Alignment explanation
Indices: 72928736--72928968 Score: 280
Period size: 49 Copynumber: 4.8 Consensus size: 49
72928726 TATGGTCTTA
* *
72928736 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAACCCAGCTATGGTCTTACACGTAAT
*
72928786 CACATATCACATATCGATGCCATAACCCAGCTATGGTCTTACATGTAAT
1 CACATATCACATATCGATGCCATAACCCAGCTATGGTCTTACACGTAAT
*
72928835 CACATATCACATATCGATGCCATAACCCAGCTTTGGTCTTACACG-AAT
1 CACATATCACATATCGATGCCATAACCCAGCTATGGTCTTACACGTAAT
* * * * * *
72928883 CACATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTATACAGT-AG
1 CACATATCACATATCGATGCCATAACCCAGCTATGGTCTTACAC-GTAAT
* * * *
72928930 CATATATCACA-CT-GATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAACCCAGCTATGGTCTTA
72928969 TACGAAAATC
Statistics
Matches: 167, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
46 25 0.15
47 40 0.24
48 13 0.08
49 83 0.50
50 6 0.04
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAACCCAGCTATGGTCTTACACGTAAT
Found at i:72928819 original size:91 final size:91
Alignment explanation
Indices: 72928707--72928974 Score: 267
Period size: 98 Copynumber: 2.9 Consensus size: 91
72928697 ATCTTCATAT
* * * *
72928707 AATGATGCCATAGCCCAGCTATGGTCTTAC-A-CATAT-TCATATATCGATGCCATAGCCCAGCT
1 AATGATGCCATAACCCAGCTATGGTCTTACAATCACATATCACATATCGATGCCATAACCCAGCT
72928769 ATGGTCTTACACGTAATCACATATCAC
66 ATGGTCTTACACG-AATCACATATCAC
72928796 ATATCGATGCCATAACCCAGCTATGGTCTTACATGTAATCACATATCACATATCGATGCCATAAC
1 A-AT-GATGCCATAACCCAGCTATGGTCTTAC----AATCACATATCACATATCGATGCCATAAC
* *
72928861 CCAGCTTTGGTCTTACACGAATCACATATCTC
60 CCAGCTATGGTCTTACACGAATCACATATCAC
* * * * * * *
72928893 ACTGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACA-CT-GATGCCATATCCC
1 AATGATGCCATAACCCAGCTATGGTC-T-TACA--ATCACATATCACATATCGATGCCATAACCC
* *
72928956 AGATATGGTCTTATACGAA
62 AGCTATGGTCTTACACGAA
72928975 AATCACTTGT
Statistics
Matches: 150, Mismatches: 16, Indels: 22
0.80 0.09 0.12
Matches are distributed among these distances:
89 1 0.01
90 2 0.01
91 26 0.17
93 29 0.19
94 1 0.01
95 32 0.21
96 3 0.02
97 20 0.13
98 36 0.24
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (91 bp):
AATGATGCCATAACCCAGCTATGGTCTTACAATCACATATCACATATCGATGCCATAACCCAGCT
ATGGTCTTACACGAATCACATATCAC
Found at i:72928849 original size:56 final size:49
Alignment explanation
Indices: 72928792--72928968 Score: 195
Period size: 47 Copynumber: 3.7 Consensus size: 49
72928782 TAATCACATA
*
72928792 TCACATATCGATGCCATAACCCAGCTATGGTCTTACATGTAATCACATA
1 TCACATATCGATGCCATAACCCAGCTATGGTCTTACACGTAATCACATA
*
72928841 TCACATATCGATGCCATAACCCAGCTTTGGTCTTACACG-AATCACATA
1 TCACATATCGATGCCATAACCCAGCTATGGTCTTACACGTAATCACATA
* * * * * * *
72928889 TCTCA-CT-GATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATA
1 TCACATATCGATGCCATAACCCAGCTATGGTCTTACAC-GTAATCACATA
* * *
72928936 TCACA-CT-GATGCCATATCCCAGATATGGTCTTA
1 TCACATATCGATGCCATAACCCAGCTATGGTCTTA
72928969 TACGAAAATC
Statistics
Matches: 115, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
46 25 0.22
47 40 0.35
48 13 0.11
49 37 0.32
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (49 bp):
TCACATATCGATGCCATAACCCAGCTATGGTCTTACACGTAATCACATA
Found at i:72929025 original size:31 final size:31
Alignment explanation
Indices: 72928990--72929107 Score: 173
Period size: 31 Copynumber: 3.8 Consensus size: 31
72928980 CTTGTCACTT
*
72928990 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * *
72929021 GTAGCTGGAGTTACCACTTTTCACTGAACAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
72929052 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
**
72929083 GTAGCAAAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
72929108 TGTCATTTGT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 76 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:72929075 original size:62 final size:62
Alignment explanation
Indices: 72928990--72929107 Score: 191
Period size: 62 Copynumber: 1.9 Consensus size: 62
72928980 CTTGTCACTT
*** *
72928990 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCTGGAGTTACCACTTTTCACTGAACAG
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCAAAAGCTACCACTTTTCACTGAACAG
*
72929052 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCAAAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCAAAAGCTACCACTTTTCACT
72929108 TGTCATTTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCAAAAGCTACCACTTTTCACTGAACAG
Found at i:72936771 original size:45 final size:45
Alignment explanation
Indices: 72936720--72936811 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
72936710 TGTGCAACAC
* * * *
72936720 TGACTTTGAAACACGGCCATGACACATGCCCATGTGGCCTGCCCG
1 TGACTTTAAAACACGACCACGACACACGCCCATGTGGCCTGCCCG
*
72936765 TGACTTTAAAACACGACCACGACACACGCCCGTGTGGCCTGCCCG
1 TGACTTTAAAACACGACCACGACACACGCCCATGTGGCCTGCCCG
72936810 TG
1 TG
72936812 TACTAAACTG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.35, G:0.24, T:0.18
Consensus pattern (45 bp):
TGACTTTAAAACACGACCACGACACACGCCCATGTGGCCTGCCCG
Found at i:72937668 original size:49 final size:48
Alignment explanation
Indices: 72937594--72937861 Score: 212
Period size: 49 Copynumber: 5.7 Consensus size: 48
72937584 ATAAGTTGCA
** * *
72937594 GATGCCATGTCCTGGACATGGTCTTATACTGGCTATCATCATCGAGGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCT
* * * * *
72937643 GTTGCCATGTCCCAGACATGGTCTTATACTAGCTATCGTCTATGCG-TGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTATCATC-AT-CGAGGCT
* * * * *
72937693 GATGCATGTCACAGACAT-GTCTTACACTAGC-A-CAAC-TCTTA-GCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCATC-GAGGCT
* * * * **
72937737 AAAGCATGTCCCAGACA-CGTCTTACATTGGCTATCATTGTCGAGGCT
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCT
* * * *
72937784 GATGCATGTCCCAGACATGGTCTTACACTGGCTAGCAT-ATTGTGGTT
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCT
72937831 GATGCATGTCCCAGACAT-GTCTTACACTGGC
1 GATGCATGTCCCAGACATGGTCTTACACTGGC
72937862 ACACAAGTAA
Statistics
Matches: 177, Mismatches: 32, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 28 0.16
45 1 0.01
46 18 0.10
47 43 0.24
48 29 0.16
49 48 0.27
50 7 0.04
51 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCT
Found at i:72937797 original size:47 final size:46
Alignment explanation
Indices: 72937740--72937861 Score: 156
Period size: 47 Copynumber: 2.6 Consensus size: 46
72937730 CTTAGCCAAA
* *
72937740 GCATGTCCCAGACACGTCTTACATTGGCTATCAT-TGTCGAGGCTGAT
1 GCATGTCCCAGACACGTCTTACACTGGCTAGCATAT-T-GAGGCTGAT
* * *
72937787 GCATGTCCCAGACATGGTCTTACACTGGCTAGCATATTGTGGTTGAT
1 GCATGTCCCAGACA-CGTCTTACACTGGCTAGCATATTGAGGCTGAT
*
72937834 GCATGTCCCAGACATGTCTTACACTGGC
1 GCATGTCCCAGACACGTCTTACACTGGC
72937862 ACACAAGTAA
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
46 13 0.19
47 35 0.52
48 18 0.27
49 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (46 bp):
GCATGTCCCAGACACGTCTTACACTGGCTAGCATATTGAGGCTGAT
Found at i:72937877 original size:138 final size:141
Alignment explanation
Indices: 72937614--72937864 Score: 328
Period size: 138 Copynumber: 1.8 Consensus size: 141
72937604 CCTGGACATG
* * * *
72937614 GTCTTATACTGGCTATCATCATCGAGGCCGTTGCCATGTCCCAGACATGGTCTTATACTAGCTAT
1 GTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAG
* * * *
72937679 CGTCTATGCGTGCTGATGCATGTCACAGACATGTCTTACACTAGCACAACTCTTAGCCAAAGCAT
66 CATATATGCGTGCTGATGCATGTCACAGACATGTCTTACACTAGCACAACACTAAGCCAAAGCAT
72937744 GTCCCAGACAC
131 GTCCCAGACAC
* ** * *
72937755 GTCTTACATTGGCTATCATTGTCGAGGCTGATG-CATGTCCCAGACATGGTCTTACACTGGCTAG
1 GTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAG
* * * *
72937819 CATAT-TGTG-GTTGATGCATGTCCCAGACATGTCTTACACTGGCACA
66 CATATATGCGTGCTGATGCATGTCACAGACATGTCTTACACTAGCACA
72937865 CAAGTAATCC
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
138 34 0.36
139 3 0.03
140 31 0.33
141 27 0.28
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (141 bp):
GTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAG
CATATATGCGTGCTGATGCATGTCACAGACATGTCTTACACTAGCACAACACTAAGCCAAAGCAT
GTCCCAGACAC
Found at i:72944217 original size:55 final size:55
Alignment explanation
Indices: 72944141--72944275 Score: 164
Period size: 55 Copynumber: 2.5 Consensus size: 55
72944131 CGTGCCCTTA
* * * * * *
72944141 ACCCGTGTGCAACATTGACTTTGAAACACGGCCATGACACACGCTCGTGTGGCCT
1 ACCCGTGTACAACATTAACTTTAAAACACGGCCACGACACACACCCGTGTGGCCT
** *
72944196 GTCCGTGTACAGCATTAACTTTAAAACACGGCCACGACACACACCCGTGTGGCCT
1 ACCCGTGTACAACATTAACTTTAAAACACGGCCACGACACACACCCGTGTGGCCT
*
72944251 ACCCGTGTACTAA-ATTGACTTTAAA
1 ACCCGTGTAC-AACATTAACTTTAAA
72944276 TTTTAAGTGC
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
55 65 0.98
56 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (55 bp):
ACCCGTGTACAACATTAACTTTAAAACACGGCCACGACACACACCCGTGTGGCCT
Found at i:72945243 original size:47 final size:47
Alignment explanation
Indices: 72945040--72945260 Score: 184
Period size: 49 Copynumber: 4.7 Consensus size: 47
72945030 ATAAGTTGCA
** * *
72945040 GATGCCATGTCCTGGACATGGTCTTATACTGGCTATCATCATCGAGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCTTCGAGGCC
* * * * * *
72945089 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTATGCG-TGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCT-T-CGAGGCC
* * *
72945139 GATGCATGTCCCAGACATGTCTTCCACTAGC-A-CAACTCTT--A-GCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATC-A-TCTTCGAGGCC
* *
72945183 GACGCATGTCCCAGACACGTCTTACACTGGCTATCATCTTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTTCGAGGCC
*
72945230 GATGCATGCCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
72945261 ACACAAGTAA
Statistics
Matches: 142, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 34 0.24
45 2 0.01
46 3 0.02
47 31 0.22
48 14 0.10
49 49 0.35
50 7 0.05
51 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTTCGAGGCC
Found at i:72945641 original size:30 final size:30
Alignment explanation
Indices: 72945601--72945657 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
72945591 AATACACATC
* * *
72945601 TTTGGTAAAATGACCATTTTGCCCTTAGAT
1 TTTGGCAAAATGACCATTATACCCTTAGAT
72945631 TTTGGCAAAATGACCATTATACCCTTA
1 TTTGGCAAAATGACCATTATACCCTTA
72945658 TGCTCGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTATACCCTTAGAT
Found at i:72950102 original size:10 final size:10
Alignment explanation
Indices: 72950087--72950117 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
72950077 TATATATATG
72950087 AGTGAGCATT
1 AGTGAGCATT
*
72950097 AGTGAGTATT
1 AGTGAGCATT
72950107 AGTGAGCATT
1 AGTGAGCATT
72950117 A
1 A
72950118 TTGTACGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.32
Consensus pattern (10 bp):
AGTGAGCATT
Found at i:72957042 original size:13 final size:13
Alignment explanation
Indices: 72957024--72957049 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72957014 ATATTATAAT
72957024 TATTTTATGTTAA
1 TATTTTATGTTAA
72957037 TATTTTATGTTAA
1 TATTTTATGTTAA
72957050 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:72958471 original size:40 final size:40
Alignment explanation
Indices: 72958423--72958588 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
72958413 GGACTAAGAT
72958423 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
72958463 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
72958503 CCGAAGGCATCTATGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
72958543 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
72958582 CCGAAGG
1 CCGAAGG
72958589 TACTTGGGTT
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 15 0.13
40 101 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:72973664 original size:36 final size:36
Alignment explanation
Indices: 72973617--72973685 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
72973607 AGAATATAGA
72973617 AGATGTTTTGGGCAGTGTGTCAATTATGAAAAAGCT
1 AGATGTTTTGGGCAGTGTGTCAATTATGAAAAAGCT
72973653 AGATGTTTTGGGCAGTGTGTCAATTATGAAAAA
1 AGATGTTTTGGGCAGTGTGTCAATTATGAAAAA
72973686 TGTACTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (36 bp):
AGATGTTTTGGGCAGTGTGTCAATTATGAAAAAGCT
Found at i:72976254 original size:12 final size:12
Alignment explanation
Indices: 72976237--72976280 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
72976227 CTATCTCTTA
72976237 GCTTTGAAACAT
1 GCTTTGAAACAT
72976249 GCTTTGAAACAT
1 GCTTTGAAACAT
72976261 GCTTTGAAACAT
1 GCTTTGAAACAT
*
72976273 ACTTTGAA
1 GCTTTGAA
72976281 TCACTCTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (12 bp):
GCTTTGAAACAT
Found at i:72977417 original size:15 final size:15
Alignment explanation
Indices: 72977399--72977434 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
72977389 TCCCAGAATT
72977399 GAAACTTTATTAATG
1 GAAACTTTATTAATG
72977414 GAAACTTTATTAATG
1 GAAACTTTATTAATG
*
72977429 AAAACT
1 GAAACT
72977435 AAATTGTCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (15 bp):
GAAACTTTATTAATG
Found at i:72979444 original size:47 final size:47
Alignment explanation
Indices: 72979337--72979694 Score: 279
Period size: 47 Copynumber: 7.6 Consensus size: 47
72979327 TTTGTGCGCT
* * *
72979337 AGTGTAAGACATGTCTGGGACATACTTCGGC--CACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCACA-GATGAGAGCC
* * * *
72979383 AGTGTAAGACCATGTCTGGGATATGGCATCGGCATC-CAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCACAGATGAGAGCC
* * *
72979431 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT-AC-TATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCACAGATGAGAGCC
* * *
72979477 AGTGTAAGACCATGTCTGGGACATGGCATTGGCA-CAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCACAGATGAGAGCC
* * * *
72979525 AGCGTAAGACATGTCTGGGACATGCATAGGCCTCGACAGA-GATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATC-ACAGATGAGAGCC
** * * * * *
72979572 AGTGTAAGACATGTCTGGGACACACATCGGC-TAAGAGTTG-TA-CT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCACAGATGAGAGCC
* * * * *
72979616 AGTGTAAGACATGTCTAGGACATGCATCAGTA-CGCGTATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCAC--AGATGAGAGCC
72979664 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
72979695 AAAATATATC
Statistics
Matches: 244, Mismatches: 48, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
44 27 0.11
45 5 0.02
46 40 0.16
47 97 0.40
48 54 0.22
49 15 0.06
50 6 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCACAGATGAGAGCC
Found at i:72979495 original size:94 final size:93
Alignment explanation
Indices: 72979334--72979694 Score: 382
Period size: 94 Copynumber: 3.9 Consensus size: 93
72979324 TGATTTGTGC
* * * * *
72979334 GCTAGTGTAAGACATGTCTGGGACATACTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
* * *
72979399 TGGGATATGGCATCGGCATCCAGACGAGG
66 TGGGACATGGCATCGGCATCAAGA-GAGT
*
72979428 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
*
72979493 TGGGACATGGCATTGGCA-CAGAGATGAGT
66 TGGGACATGGCATCGGCATCA-AGA-GAGT
* *
72979522 GCCAGCGTAAGACATGTCTGGGACATGCAT-AGGCC-TCGAC-A-GAGATAGCCAGTGTAAGA-C
1 GCTAGTGTAAGACATGTCTGGGACATGCATCA-GCCAT--ACTATGAG--AGCCAGTGTAAGACC
** *
72979582 ATGTCTGGGACA-CACATCGGC-T-AAGAGTTGT
61 ATGTCTGGGACATGGCATCGGCATCAAGAG-AGT
* * *
72979613 ACTAGTGTAAGACATGTCTAGGACATGCATCAGTACGCGTA-TATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCAT
72979677 GTCTGGGACATGGCATCG
63 GTCTGGGACATGGCATCG
72979695 AAAATATATC
Statistics
Matches: 226, Mismatches: 24, Indels: 34
0.80 0.08 0.12
Matches are distributed among these distances:
90 1 0.00
91 32 0.14
92 15 0.07
93 27 0.12
94 135 0.60
95 16 0.07
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATCAAGAGAGT
Found at i:72986521 original size:47 final size:45
Alignment explanation
Indices: 72986451--72986810 Score: 251
Period size: 47 Copynumber: 7.7 Consensus size: 45
72986441 GATTTGTGCA
* * *
72986451 CCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAA
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGAG
* *
72986497 CCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACGAGGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGAGAG
* * * * * * *
72986545 CTACTGTAAGACATGTTTGGGACATGCATCAGCCATACTATGATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGAG
* * * *
72986591 CTAGTGTAAGACCATGTATGGGACATGGCATCGGCACAGAGATGAGTG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAGATGAGAG
* *
72986639 CCAATGTAAGACATGTCTGGGACATGCATCGGCCACGACAGA-GATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGATGAGAG
* * * * * * *
72986686 CCCGTGTAAGACGTGTCTGGGACACGCATCAGCTA-AGA-GTTGTG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGAG
* * ** * *
72986730 CTAGTGTAAGACATGTCTGGGACATACATCAACACGCGTATATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGC-CAC--AGATGAGAG
72986778 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
72986811 AAAATATATC
Statistics
Matches: 245, Mismatches: 50, Indels: 34
0.74 0.15 0.10
Matches are distributed among these distances:
43 4 0.02
44 29 0.12
45 1 0.00
46 39 0.16
47 90 0.37
48 58 0.24
49 20 0.08
50 4 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGAG
Found at i:72986616 original size:94 final size:93
Alignment explanation
Indices: 72986455--72986810 Score: 350
Period size: 94 Copynumber: 3.8 Consensus size: 93
72986445 TGTGCACCAG
* * * * *
72986455 TGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAACCAGTGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGA
* * *
72986520 CATGGCATCGGCATCCAGACGAGGGCTAC
66 CATGGCATCGGCATCAAGA-GAGTGCTAA
* * * *
72986549 TGTAAGACATGTTTGGGACATGCATCAGCCATACTATGATAGCTAGTGTAAGACCATGTATGGGA
1 TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGA
*
72986614 CATGGCATCGGCA-CAGAGATGAGTGCCAA
66 CATGGCATCGGCATCA-AGA-GAGTGCTAA
* * * *
72986643 TGTAAGACATGTCTGGGACATGCATCGGCCACGAC-A-GAGATAGCCCGTGTAAGA-CGTGTCTG
1 TGTAAGACATGTCTGGGACATGCATCAGCCA-TACTATGAG--AGCCAGTGTAAGACCATGTCTG
* * * *
72986705 GGACA-CGCATCAGC-T-AAGAGTTGTGCTAG
63 GGACATGGCATCGGCATCAAGAG-AGTGCTAA
* * *
72986734 TGTAAGACATGTCTGGGACATACATCAACACGCGTA-TATGAGAGCCAGTGTAAGACCATGTCTG
1 TGTAAGACATGTCTGGGACATGCATC-A-GC-CATACTATGAGAGCCAGTGTAAGACCATGTCTG
72986798 GGACATGGCATCG
63 GGACATGGCATCG
72986811 AAAATATATC
Statistics
Matches: 213, Mismatches: 36, Indels: 26
0.77 0.13 0.09
Matches are distributed among these distances:
90 1 0.00
91 33 0.15
92 13 0.06
93 25 0.12
94 128 0.60
95 13 0.06
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (93 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCATCAAGAGAGTGCTAA
Found at i:72991517 original size:15 final size:15
Alignment explanation
Indices: 72991499--72991529 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72991489 GTCAAAGAGG
72991499 AATTTTCCAAAGTTA
1 AATTTTCCAAAGTTA
*
72991514 AATTTTCTAAAGTTA
1 AATTTTCCAAAGTTA
72991529 A
1 A
72991530 CTCCAGTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (15 bp):
AATTTTCCAAAGTTA
Found at i:72992939 original size:30 final size:30
Alignment explanation
Indices: 72992905--72992972 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
72992895 CGAGCGCAAT
* *
72992905 CAACAAAGGCAAACTTTCTAATTCTTAAAC
1 CAACAAACGCAAACTTCCTAATTCTTAAAC
***
72992935 CAACAAACTTTAACTTCCTAATTCTTAAAC
1 CAACAAACGCAAACTTCCTAATTCTTAAAC
72992965 CAACAAAC
1 CAACAAAC
72992973 TCTATCATAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.44, C:0.26, G:0.03, T:0.26
Consensus pattern (30 bp):
CAACAAACGCAAACTTCCTAATTCTTAAAC
Found at i:72992973 original size:30 final size:30
Alignment explanation
Indices: 72992916--72992973 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
72992906 AACAAAGGCA
*
72992916 AACTTTCTAATTCTTAAACCAACAAACTTT
1 AACTTCCTAATTCTTAAACCAACAAACTTT
72992946 AACTTCCTAATTCTTAAACCAACAAACT
1 AACTTCCTAATTCTTAAACCAACAAACT
72992974 CTATCATAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.33
Consensus pattern (30 bp):
AACTTCCTAATTCTTAAACCAACAAACTTT
Found at i:72994642 original size:16 final size:16
Alignment explanation
Indices: 72994623--72994661 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
72994613 AGAGAGCAGG
* *
72994623 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAAGAA
72994639 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
72994655 GGAAAAA
1 GGAAAAA
72994662 GGGGAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:72995860 original size:38 final size:38
Alignment explanation
Indices: 72995809--72995885 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
72995799 GAATAAAAGT
72995809 AAAACTTTATGGGTAATTTTGTAAAAATGTCAAAAATG
1 AAAACTTTATGGGTAATTTTGTAAAAATGTCAAAAATG
*
72995847 AAAACTTTATGGGTAATTTTGTAAAAATGTCAGAAATG
1 AAAACTTTATGGGTAATTTTGTAAAAATGTCAAAAATG
72995885 A
1 A
72995886 CCAAATTGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.44, C:0.05, G:0.17, T:0.34
Consensus pattern (38 bp):
AAAACTTTATGGGTAATTTTGTAAAAATGTCAAAAATG
Found at i:72997025 original size:138 final size:138
Alignment explanation
Indices: 72996777--72997145 Score: 540
Period size: 138 Copynumber: 2.6 Consensus size: 138
72996767 GTGTGCTCTC
** * * * * *
72996777 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATAAAAAGAGTAAGA
* **
72996842 CCATGGTTGAAAGATATCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCA
72996907 TGGCAACG
131 TGGCAACG
* *
72996915 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATAAAAAGAATAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATAAAAAGAGTAAGA
72996980 CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCA
72997045 TGGCAACG
131 TGGCAACG
* * *
72997053 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAATGAGT
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-TAAA--AA-GAGT
* * *
72997118 AAGACCATAGTTGAAAGACACTATGGCA
62 AAGACCATGGTTGAAAGATACCATGGCA
72997146 TCATGTCAAA
Statistics
Matches: 208, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
138 175 0.84
139 3 0.01
141 2 0.01
142 28 0.13
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATAAAAAGAGTAAGA
CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCA
TGGCAACG
Found at i:72997103 original size:46 final size:46
Alignment explanation
Indices: 72996776--72997097 Score: 509
Period size: 46 Copynumber: 7.0 Consensus size: 46
72996766 AGTGTGCTCT
**
72996776 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
** *
72996822 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
**
72996868 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
72996914 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
72996960 GTGACATAAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
72997006 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
72997052 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
72997098 ATGACAGAAA
Statistics
Matches: 261, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 261 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:72997157 original size:92 final size:90
Alignment explanation
Indices: 72996791--72997172 Score: 441
Period size: 92 Copynumber: 4.1 Consensus size: 90
72996781 ATGAAATGTG
**
72996791 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
* * * * **
72996856 TATCATGGCAACCTGATATGAAATGTG
66 TACCATGGCAA-CTCATGT-AAAAGAA
*
72996883 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
*
72996948 TACCATGGCAACGTGACAT-AAAAAGAA
66 TACCATGGCAAC-T--CATGTAAAAGAA
72996975 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
72997040 TACCATGGCAACGTGACATG-AAAAGAA
66 TACCATGGCAAC-T--CATGTAAAAGAA
* * *
72997067 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAATGAGTAAGACCATAGTTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATG-A--A-TAAGACCATGGTTG
* * *
72997131 AAAGACACTATGGC-A-TCATGTCAAAGATAAA
61 AAAGATACCATGGCAACTCATGT-AAA-A-GAA
72997162 TAAGACCATGG
1 TAAGACCATGG
72997173 ATGGGAGACG
Statistics
Matches: 261, Mismatches: 16, Indels: 23
0.87 0.05 0.08
Matches are distributed among these distances:
91 6 0.02
92 207 0.79
93 5 0.02
94 3 0.01
95 15 0.06
96 25 0.10
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (90 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACTCATGTAAAAGAA
Found at i:73000873 original size:31 final size:29
Alignment explanation
Indices: 73000827--73000896 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 29
73000817 GAAAAAACTT
*
73000827 AAAAGTAA-AATGAATATGAATATCTATCAAC
1 AAAA-TAAGAATGAATATGAATA--TAACAAC
*
73000858 AAAATAAGAATGAATATGAATATAACAAT
1 AAAATAAGAATGAATATGAATATAACAAC
73000887 AAAATAAGAA
1 AAAATAAGAA
73000897 GCAAAAATCG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 15 0.42
30 3 0.08
31 18 0.50
ACGTcount: A:0.61, C:0.06, G:0.10, T:0.23
Consensus pattern (29 bp):
AAAATAAGAATGAATATGAATATAACAAC
Found at i:73005628 original size:26 final size:26
Alignment explanation
Indices: 73005592--73005701 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
73005582 TGATACAAAT
73005592 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
73005618 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
73005644 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
73005670 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
73005696 TGATAA
1 TGATAA
73005702 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:73007733 original size:137 final size:137
Alignment explanation
Indices: 73007487--73007773 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
73007477 GAGTAGTATC
73007487 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
73007552 TGTTATCTGAATAAGGGGCTAAGGCCCTGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
73007617 ACCGTTA
131 ACCGTTA
73007624 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
73007689 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
73007754 ACTGTTA
131 ACCGTTA
**
73007761 CCTGAATGGGCTT
1 CCCAAATGGGCTT
73007774 AGGCCCAATA
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACCGTTA
Found at i:73010907 original size:5 final size:5
Alignment explanation
Indices: 73010897--73010924 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
73010887 CTGTGTGTTC
73010897 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
73010925 CACATAAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:73011096 original size:14 final size:13
Alignment explanation
Indices: 73011069--73011101 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
73011059 ATAGGGGTAT
73011069 TATTTT-AAATGA
1 TATTTTAAAATGA
73011081 TATTTTAAAGATGA
1 TATTTTAAA-ATGA
73011095 TATTTTA
1 TATTTTA
73011102 TTGAATATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 2 0.11
14 11 0.58
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (13 bp):
TATTTTAAAATGA
Found at i:73015686 original size:23 final size:22
Alignment explanation
Indices: 73015635--73015686 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
73015625 CCTCGTCTTT
*
73015635 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
73015657 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
73015680 TTCTTTT
1 TTCTTTT
73015687 TCAATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:73018109 original size:17 final size:17
Alignment explanation
Indices: 73018079--73018112 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
73018069 TAAAAATAAA
73018079 ACTTTACAACTTTGGCC
1 ACTTTACAACTTTGGCC
73018096 ACTTTGACAA-TTTGGCC
1 ACTTT-ACAACTTTGGCC
73018113 TGATTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (17 bp):
ACTTTACAACTTTGGCC
Found at i:73030389 original size:39 final size:39
Alignment explanation
Indices: 73030346--73030422 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
73030336 CAATTAATGT
73030346 GTACATACCTATTTTTATATGTTATAATATTGTTTAAGG
1 GTACATACCTATTTTTATATGTTATAATATTGTTTAAGG
*
73030385 GTACATACCTATTTTTATATGTTATGATATTGTTTAAG
1 GTACATACCTATTTTTATATGTTATAATATTGTTTAAG
73030423 AATTATAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.49
Consensus pattern (39 bp):
GTACATACCTATTTTTATATGTTATAATATTGTTTAAGG
Found at i:73040279 original size:30 final size:31
Alignment explanation
Indices: 73040243--73040311 Score: 122
Period size: 30 Copynumber: 2.2 Consensus size: 31
73040233 AGTTTTAATT
73040243 TTCATTTTCATTTTCATTTTTGGAAACCT-A
1 TTCATTTTCATTTTCATTTTTGGAAACCTAA
73040273 TTCATTTTCATTTTCATTTTTGGAAACCTACA
1 TTCATTTTCATTTTCATTTTTGGAAACCTA-A
73040305 TTCATTT
1 TTCATTT
73040312 CCAAATGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 29 0.78
32 8 0.22
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (31 bp):
TTCATTTTCATTTTCATTTTTGGAAACCTAA
Found at i:73047753 original size:44 final size:46
Alignment explanation
Indices: 73047702--73047794 Score: 129
Period size: 44 Copynumber: 2.1 Consensus size: 46
73047692 TACAACATCT
* *
73047702 ATTCCATTCAACCAAGC-ATAAGAATT-CT-ATTACAGTTCTATTCC
1 ATTCCATTCAACCAAACAAT-AGAATTACTGATTACAGCTCTATTCC
*
73047746 ATTCCATTCAACCAAACAATTGAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
73047792 ATT
1 ATT
73047795 ACAGTGCTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 21 0.49
45 4 0.09
46 18 0.42
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.34
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
Found at i:73049314 original size:25 final size:24
Alignment explanation
Indices: 73049279--73049373 Score: 66
Period size: 25 Copynumber: 3.9 Consensus size: 24
73049269 AGCTCTTTGT
* *
73049279 GAGCTTTCTGATTAATGGCTCTCCG
1 GAGCTTCCTGA-TAATAGCTCTCCG
* * **
73049304 GAGCTTCCTGAT-ATCGCTCACTT
1 GAGCTTCCTGATAATAGCTCTCCG
* * *
73049327 GAACTTCCTGATATATTGCTATCCG
1 GAGCTTCCTGATA-ATAGCTCTCCG
*
73049352 GAGCTTCTTGATTAATAGCTCT
1 GAGCTTCCTGA-TAATAGCTCT
73049374 TCAGAGGTAC
Statistics
Matches: 52, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
23 18 0.35
24 1 0.02
25 31 0.60
26 2 0.04
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (24 bp):
GAGCTTCCTGATAATAGCTCTCCG
Found at i:73049479 original size:25 final size:24
Alignment explanation
Indices: 73049423--73049482 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
73049413 TATGGCTTTT
*
73049423 ATGAGCTTTCCGTTATATAGTCCAG
1 ATGAGC-TTCCGTTATATAGTCCAC
*
73049448 ATAAGCTTCACGTTATATA-TCTCAC
1 ATGAGCTTC-CGTTATATAGTC-CAC
73049473 ATGAGCTTCC
1 ATGAGCTTCC
73049483 TATTATATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 6 0.20
25 24 0.80
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (24 bp):
ATGAGCTTCCGTTATATAGTCCAC
Found at i:73054405 original size:35 final size:35
Alignment explanation
Indices: 73054354--73054537 Score: 235
Period size: 35 Copynumber: 5.3 Consensus size: 35
73054344 AGTGCCACGA
* * *
73054354 TTCACAACTCATTATGGTTAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* * *
73054389 TTCACAACTCAGTATGGAAAAAACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* *
73054424 TTTATAGCTCAGTATGGATAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* * *
73054459 ATCATAACTCAATATGGAAAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
*
73054494 ATT-ATAGCTCAGTATGGATAATACCATACCTACGT
1 -TTCATAACTCAGTATGGATAATACCATACCTACGT
*
73054529 ATCATAACT
1 TTCATAACT
73054538 TTTCCATGGA
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
34 1 0.01
35 125 0.98
36 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (35 bp):
TTCATAACTCAGTATGGATAATACCATACCTACGT
Found at i:73054479 original size:70 final size:70
Alignment explanation
Indices: 73054361--73054537 Score: 291
Period size: 70 Copynumber: 2.5 Consensus size: 70
73054351 CGATTCACAA
* * * * * *
73054361 CTCATTATGGTTAATACCATACCTACGTTTCACAACTCAGTATGGAAAAAACCATACCTACGTTT
1 CTCAGTATGGATAATACCATACCTACGTATCATAACTCAATATGGAAAAAACCATACCTACGTAT
73054426 TATAG
66 TATAG
*
73054431 CTCAGTATGGATAATACCATACCTACGTATCATAACTCAATATGGAAAATACCATACCTACGTAT
1 CTCAGTATGGATAATACCATACCTACGTATCATAACTCAATATGGAAAAAACCATACCTACGTAT
73054496 TATAG
66 TATAG
73054501 CTCAGTATGGATAATACCATACCTACGTATCATAACT
1 CTCAGTATGGATAATACCATACCTACGTATCATAACT
73054538 TTTCCATGGA
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 100 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (70 bp):
CTCAGTATGGATAATACCATACCTACGTATCATAACTCAATATGGAAAAAACCATACCTACGTAT
TATAG
Found at i:73057340 original size:48 final size:48
Alignment explanation
Indices: 73057282--73057832 Score: 895
Period size: 48 Copynumber: 11.3 Consensus size: 48
73057272 ATATACACAC
* *
73057282 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
73057330 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
73057378 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
73057426 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
73057476 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
73057524 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
73057572 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
73057622 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* * *
73057672 TTCTCATACATATTTCACATTAGCCATTCAGTTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
73057720 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
73057768 ATCTCATACTTATTTCACATTAGCCATTCGGCTTTACCATATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACC--ACATATACAT
*
73057818 TTCTCATACATATTT
1 ATCTCATACATATTT
73057833 ATCGTGTACA
Statistics
Matches: 473, Mismatches: 24, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
48 310 0.66
50 163 0.34
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:73057537 original size:146 final size:144
Alignment explanation
Indices: 73057282--73057832 Score: 895
Period size: 146 Copynumber: 3.8 Consensus size: 144
73057272 ATATACACAC
* *
73057282 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
73057347 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
*
73057412 TACCACATATATAT
131 TACCACATATACAT
*
73057426 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTT
* *
73057491 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACAGTAGCCATTCGGC
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
73057556 TTTACCACATATACAT
129 TTTACCACATATACAT
*
73057572 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTT
* *
73057637 CACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCA
64 CACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTTCACATTAGCCATTCG
*
73057702 GTTTTACCACATATACAT
127 GCTTTACCACATATACAT
* * *
73057720 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACTTATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
73057785 CATTAGCCATTCGGCTTTACCATATATATACATTTCTCATACATATTT
66 CATTAGCCATTCGGCTTTACC--ACATATACATATCTCATACATATTT
73057833 ATCGTGTACA
Statistics
Matches: 385, Mismatches: 16, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
144 38 0.10
146 257 0.67
148 90 0.23
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (144 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
TACCACATATACAT
Found at i:73057725 original size:196 final size:196
Alignment explanation
Indices: 73057283--73057832 Score: 1005
Period size: 196 Copynumber: 2.8 Consensus size: 196
73057273 TATACACACA
* * *
73057283 TCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCAC
*
73057348 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
66 AGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
*
73057413 ACCACATATAT--ATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
131 ACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
73057476 T
196 T
73057477 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCAC
73057542 AGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
66 AGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
73057607 ACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
131 ACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
73057672 T
196 T
* *
73057673 TCTCATACATATTTCACATTAGCCATTCAGTTTTACCACATATACATATCTCATATATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCAC
*
73057738 AGTAGCCATTCGGCTTTACCACATATACATATCTCATACTTATTTCACATTAGCCATTCGGCTTT
66 AGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
*
73057803 ACCATATATATACATTTCTCATACATATTT
131 ACCACATATATACATTTCTCATACATATTT
73057833 ATCGTGTACA
Statistics
Matches: 345, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
194 137 0.40
196 208 0.60
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (196 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCAC
AGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
ACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
T
Found at i:73065329 original size:66 final size:66
Alignment explanation
Indices: 73065255--73065382 Score: 238
Period size: 66 Copynumber: 1.9 Consensus size: 66
73065245 TATAGGGGAC
*
73065255 ACACGGCTACAACACATGCCCGTGGCGCAAACCGTGTGTGACACACGGCCTAGACACACGCCCGT
1 ACACGGCTACAACACATGCCCGTGGCGCAAACCGTGTATGACACACGGCCTAGACACACGCCCGT
73065320 G
66 G
*
73065321 ACACGGCTACAACACATGCCCGTGGCGCAAACCGTGTATGGCACACGGCCTAGACACACGCC
1 ACACGGCTACAACACATGCCCGTGGCGCAAACCGTGTATGACACACGGCCTAGACACACGCC
73065383 TGTGTGTCTA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.27, C:0.37, G:0.25, T:0.12
Consensus pattern (66 bp):
ACACGGCTACAACACATGCCCGTGGCGCAAACCGTGTATGACACACGGCCTAGACACACGCCCGT
G
Found at i:73066097 original size:35 final size:35
Alignment explanation
Indices: 73066046--73066182 Score: 166
Period size: 35 Copynumber: 3.9 Consensus size: 35
73066036 AGTGCCACGG
* **
73066046 TTCACAACTCAATATGGTTAATACCATACCTATGT
1 TTCACAACTCAGTATGGAAAATACCATACCTATGT
*
73066081 TTCACAACTCAGTATGGAAAATACCATACCTACGT
1 TTCACAACTCAGTATGGAAAATACCATACCTATGT
* * * * * *
73066116 TTTATAGCTCAGTATGGATAATACTATACCAATGT
1 TTCACAACTCAGTATGGAAAATACCATACCTATGT
* *
73066151 ATCATAACTCAGTATGGAAAATACCATACCTA
1 TTCACAACTCAGTATGGAAAATACCATACCTA
73066183 CGTATTGTTA
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 85 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (35 bp):
TTCACAACTCAGTATGGAAAATACCATACCTATGT
Found at i:73066201 original size:35 final size:34
Alignment explanation
Indices: 73066087--73066201 Score: 124
Period size: 35 Copynumber: 3.3 Consensus size: 34
73066077 ATGTTTCACA
73066087 ACTCAGTATGGAAAATACCATACCTACGT-TTTAT
1 ACTCAGTATGGAAAATACCATACCTACGTATTT-T
* * * * * *
73066121 AGCTCAGTATGGATAATACTATACCAATGTATCATA
1 A-CTCAGTATGGAAAATACCATACCTACGTAT-TTT
73066157 ACTCAGTATGGAAAATACCATACCTACGTATTGTT
1 ACTCAGTATGGAAAATACCATACCTACGTATT-TT
*
73066192 ACTCTGTATG
1 ACTCAGTATG
73066202 TGTAGCACCC
Statistics
Matches: 64, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
34 1 0.02
35 60 0.94
36 2 0.03
37 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (34 bp):
ACTCAGTATGGAAAATACCATACCTACGTATTTT
Found at i:73066201 original size:70 final size:70
Alignment explanation
Indices: 73066053--73066185 Score: 212
Period size: 70 Copynumber: 1.9 Consensus size: 70
73066043 CGGTTCACAA
* * * *
73066053 CTCAATATGGTTAATACCATACCTATGTTTCACAACTCAGTATGGAAAATACCATACCTACGTTT
1 CTCAGTATGGATAATACCATACCAATGTATCACAACTCAGTATGGAAAATACCATACCTACGTTT
73066118 TATAG
66 TATAG
* *
73066123 CTCAGTATGGATAATACTATACCAATGTATCATAACTCAGTATGGAAAATACCATACCTACGT
1 CTCAGTATGGATAATACCATACCAATGTATCACAACTCAGTATGGAAAATACCATACCTACGT
73066186 ATTGTTACTC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 57 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (70 bp):
CTCAGTATGGATAATACCATACCAATGTATCACAACTCAGTATGGAAAATACCATACCTACGTTT
TATAG
Found at i:73066467 original size:21 final size:21
Alignment explanation
Indices: 73066438--73066490 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
73066428 ACAGGGGCAT
73066438 ACGCCCGTGTGGATGGGCAAC
1 ACGCCCGTGTGGATGGGCAAC
* *
73066459 ATGTCCGTGTGGATGGGCAAC
1 ACGCCCGTGTGGATGGGCAAC
73066480 ACGCCCGTGTG
1 ACGCCCGTGTG
73066491 AATTTATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.17, C:0.26, G:0.38, T:0.19
Consensus pattern (21 bp):
ACGCCCGTGTGGATGGGCAAC
Found at i:73067716 original size:47 final size:48
Alignment explanation
Indices: 73067607--73067728 Score: 174
Period size: 47 Copynumber: 2.6 Consensus size: 48
73067597 GTAATTTATC
* * *
73067607 GATGCCATGTCCCAGACATGGTCCTACACTGGCTCACATATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGAT
* * * *
73067655 GATACCATGTCCCAGACATGGTCTTCCATTAGCT-ACATGTCGAGGAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGAT
73067702 GATGCCATGTCCCAGACATGGTCTTAC
1 GATGCCATGTCCCAGACATGGTCTTAC
73067729 TATAACACCC
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 36 0.55
48 29 0.45
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGAT
Found at i:73077991 original size:27 final size:28
Alignment explanation
Indices: 73077961--73078017 Score: 64
Period size: 29 Copynumber: 2.0 Consensus size: 28
73077951 ATTTTTGATG
73077961 AAATAAGCTATTTG-GG-CTAATTTGTGA
1 AAATAAGCT-TTTGAGGACTAATTTGTGA
* *
73077988 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATAAGCTTTTG-AGGACTAATTTGTGA
73078017 A
1 A
73078018 TTTAACATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 4 0.16
27 7 0.28
28 2 0.08
29 12 0.48
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (28 bp):
AAATAAGCTTTTGAGGACTAATTTGTGA
Found at i:73079018 original size:12 final size:13
Alignment explanation
Indices: 73079001--73079032 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73078991 GCAAATGTTA
73079001 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
73079013 AGTTTTGATGCAT
1 AGTTTTGATGCAT
73079026 -GTTTTGA
1 AGTTTTGA
73079033 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:73084162 original size:58 final size:58
Alignment explanation
Indices: 73084070--73084185 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
73084060 TTATAGATTA
* *
73084070 AGATTACCGTCTGTGTTAGAAAAGATTCATAATGTATTTCACGTATCGATGCTTCGAC
1 AGATTACCGTCTGAGTTAGAAAAGATTCACAATGTATTTCACGTATCGATGCTTCGAC
73084128 AGATTACCGTCTGAGTTAGAAAAGATTCACAATGTATTTCACGTATCGATGCTTCGAC
1 AGATTACCGTCTGAGTTAGAAAAGATTCACAATGTATTTCACGTATCGATGCTTCGAC
73084186 GATACAGATC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (58 bp):
AGATTACCGTCTGAGTTAGAAAAGATTCACAATGTATTTCACGTATCGATGCTTCGAC
Found at i:73085152 original size:27 final size:28
Alignment explanation
Indices: 73085122--73085178 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
73085112 ATTTTTGATG
*
73085122 AAATGAGTTATTTG-GG-CTAATTTGTGA
1 AAATGAGGT-TTTGAGGACTAATTTGTGA
73085149 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGGTTTTG-AGGACTAATTTGTGA
73085178 A
1 A
73085179 TTTAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (28 bp):
AAATGAGGTTTTGAGGACTAATTTGTGA
Found at i:73086219 original size:12 final size:13
Alignment explanation
Indices: 73086202--73086233 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73086192 GCAAATGTTA
73086202 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
73086214 AGTTTTGATGCAT
1 AGTTTTGATGCAT
73086227 -GTTTTGA
1 AGTTTTGA
73086234 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:73088478 original size:27 final size:27
Alignment explanation
Indices: 73088404--73088509 Score: 101
Period size: 27 Copynumber: 4.0 Consensus size: 27
73088394 CAGTAATAAT
* * * *
73088404 AATGTAGCATAGCTACCAGAAACAATG
1 AATGTGGCATAGCTACCAGTATCAGTG
* * *
73088431 AATGTGGCAAAGCCACTAGTATCAGT-
1 AATGTGGCATAGCTACCAGTATCAGTG
73088457 AATTGTGGCATAGCTACCAGTATCAGTG
1 AA-TGTGGCATAGCTACCAGTATCAGTG
*
73088485 AATGTGACATAG-TCACCAGTA-CAGT
1 AATGTGGCATAGCT-ACCAGTATCAGT
73088510 ACTTTCTTCA
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
26 7 0.11
27 56 0.86
28 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
AATGTGGCATAGCTACCAGTATCAGTG
Found at i:73088669 original size:27 final size:27
Alignment explanation
Indices: 73088647--73088788 Score: 176
Period size: 27 Copynumber: 5.3 Consensus size: 27
73088637 GGGCATACTT
*
73088647 GTCATTTTACCCTACAAAGGCATTACG
1 GTCATTTTACCCTACAGAGGCATTACG
* * *
73088674 GTAATTTTAGCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGAGGCATTACG
* *
73088701 GTTATTTTACCCTACAGAGGCATTATG
1 GTCATTTTACCCTACAGAGGCATTACG
* * *
73088728 GTCATTTTACCTTACGGGGGCATTACG
1 GTCATTTTACCCTACAGAGGCATTACG
* * *
73088755 GTTATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGAGGCATTACG
73088782 GTCATTT
1 GTCATTT
73088789 CCATCCATTA
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGAGGCATTACG
Found at i:73088722 original size:54 final size:54
Alignment explanation
Indices: 73088650--73088788 Score: 208
Period size: 54 Copynumber: 2.6 Consensus size: 54
73088640 CATACTTGTC
* *
73088650 ATTTTACCCTACAAAGGCATTACGGTAATTTTAGCC-TACAGGGGCATTACGGTT
1 ATTTTACCCTACAGAGGCATTACGGTCATTTTA-CCTTACAGGGGCATTACGGTT
* *
73088704 ATTTTACCCTACAGAGGCATTATGGTCATTTTACCTTACGGGGGCATTACGGTT
1 ATTTTACCCTACAGAGGCATTACGGTCATTTTACCTTACAGGGGCATTACGGTT
* *
73088758 ATTTTACCCTACAGGGGTATTACGGTCATTT
1 ATTTTACCCTACAGAGGCATTACGGTCATTT
73088789 CCATCCATTA
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 2 0.03
54 75 0.97
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (54 bp):
ATTTTACCCTACAGAGGCATTACGGTCATTTTACCTTACAGGGGCATTACGGTT
Found at i:73091106 original size:48 final size:48
Alignment explanation
Indices: 73091053--73091360 Score: 194
Period size: 48 Copynumber: 6.4 Consensus size: 48
73091043 GGGCATTACA
* *
73091053 CTTACACTAGCTCACATTTCGAGGCCGATGCCATGTCCTAGACATGGT
1 CTTACACTAGCTCTCATATCGAGGCCGATGCCATGTCCTAGACATGGT
* * * * * ** *
73091101 CTTACACTAGCTCTCGTCTCAATGCAGATGCCATGTTTTAGAAATGGT
1 CTTACACTAGCTCTCATATCGAGGCCGATGCCATGTCCTAGACATGGT
* * * * *
73091149 CTTACATTAGCTCTCATAAT-GTGGACGATGGCATGTCCCAGACATGGT
1 CTTACACTAGCTCTCAT-ATCGAGGCCGATGCCATGTCCTAGACATGGT
* * * * * * * *
73091197 CTTACACTAG-TGCACATATCAATGTCGATGTCACGT-CTCAGGCATAGT
1 CTTACACTAGCT-CTCATATCGAGGCCGATGCCATGTCCT-AGACATGGT
* * * * * *
73091245 CTTACACTGGCTCTCACAAC-ATTGCCGATGCTATGTTCC-AAACATGGT
1 CTTACACTAGCTCTCATATCGA-GGCCGATGCCATG-TCCTAGACATGGT
* * * * * * *
73091293 CTTACACTGGCTCTCATATCGTGGCTGACGCTATGTCCCAAACATGGT
1 CTTACACTAGCTCTCATATCGAGGCCGATGCCATGTCCTAGACATGGT
* *
73091341 CTTACACTAGCACACATATC
1 CTTACACTAGCTCTCATATC
73091361 ACCCAAATGT
Statistics
Matches: 197, Mismatches: 53, Indels: 20
0.73 0.20 0.07
Matches are distributed among these distances:
47 8 0.04
48 185 0.94
49 3 0.02
50 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
CTTACACTAGCTCTCATATCGAGGCCGATGCCATGTCCTAGACATGGT
Found at i:73094769 original size:37 final size:36
Alignment explanation
Indices: 73094723--73094798 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
73094713 ATTTTAAAAA
*
73094723 TAATATTATCTTAATAGT-TTATTATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-CTATT-AATTTAATAT
73094759 TAATACTTATCTTAATAGTATTCTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTCTATTAATTTAATAT
73094796 TAA
1 TAA
73094799 AGTAATTAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
36 13 0.36
37 21 0.58
38 2 0.06
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTCTATTAATTTAATAT
Found at i:73094829 original size:17 final size:19
Alignment explanation
Indices: 73094782--73094835 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 19
73094772 AATAGTATTC
*
73094782 TATTAATTTAATATTAAAG
1 TATTAATTTAATATTTAAG
*
73094801 TAATTAACTTAATATTTAA-
1 T-ATTAATTTAATATTTAAG
73094820 T-TTAATTTAATATTTA
1 TATTAATTTAATATTTA
73094836 TCTTGTAGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 14 0.45
19 2 0.06
20 15 0.48
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (19 bp):
TATTAATTTAATATTTAAG
Done.