Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 232 of 325
Found at i:73098122 original size:34 final size:34
Alignment explanation
Indices: 73098079--73098146 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
73098069 ACTATTTAAT
73098079 TACTTTACTTTTTCCTTGATCTAAGTCCGAATTC
1 TACTTTACTTTTTCCTTGATCTAAGTCCGAATTC
73098113 TACTTTACTTTTTCCTTGATCTAAGTCCGAATTC
1 TACTTTACTTTTTCCTTGATCTAAGTCCGAATTC
73098147 ATCTTTTCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.24, G:0.09, T:0.47
Consensus pattern (34 bp):
TACTTTACTTTTTCCTTGATCTAAGTCCGAATTC
Found at i:73103021 original size:25 final size:26
Alignment explanation
Indices: 73103001--73103052 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
73102991 ATGATATTGT
*
73103001 ATGTG-AAC-TGAAAATGGGATAATG
1 ATGTGAAACATGAAAATGAGATAATG
*
73103025 ATTTGAAACATGAAAATGAGATACATG
1 ATGTGAAACATGAAAATGAGATA-ATG
73103052 A
1 A
73103053 GTTATGTACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 3 0.13
26 12 0.52
27 4 0.17
ACGTcount: A:0.46, C:0.06, G:0.23, T:0.25
Consensus pattern (26 bp):
ATGTGAAACATGAAAATGAGATAATG
Found at i:73104700 original size:16 final size:18
Alignment explanation
Indices: 73104679--73104715 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
73104669 TTCTATATGG
73104679 ATTTTACC-TT-TATTTT
1 ATTTTACCATTGTATTTT
73104695 ATTTTACCATTGTATTTT
1 ATTTTACCATTGTATTTT
73104713 ATT
1 ATT
73104716 AAAATAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.42
17 2 0.11
18 9 0.47
ACGTcount: A:0.22, C:0.11, G:0.03, T:0.65
Consensus pattern (18 bp):
ATTTTACCATTGTATTTT
Found at i:73112431 original size:21 final size:22
Alignment explanation
Indices: 73112380--73112431 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
73112370 AATAAAGTCT
*
73112380 ATGTA-CAAATATCATCATCTC
1 ATGTATCATATATCATCATCTC
* *
73112401 ATGTTTTCATATATCAT-ATGTC
1 ATG-TATCATATATCATCATCTC
73112423 ATGTATCAT
1 ATGTATCAT
73112432 CATTTACTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 8 0.32
22 8 0.32
23 9 0.36
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (22 bp):
ATGTATCATATATCATCATCTC
Found at i:73119303 original size:21 final size:20
Alignment explanation
Indices: 73119275--73119313 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
73119265 CAAAACTTGT
73119275 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
73119295 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
73119314 AAAAAAACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:73121824 original size:29 final size:29
Alignment explanation
Indices: 73121780--73121841 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
73121770 AAGTCATTCC
* * *
73121780 ATTTTTATTTTCATCACTCAATTATATAA
1 ATTTTTAATTTAATCACTAAATTATATAA
* *
73121809 ATTTTTAATTTAATCATTAAATTATTTAA
1 ATTTTTAATTTAATCACTAAATTATATAA
73121838 ATTT
1 ATTT
73121842 GATTTTTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (29 bp):
ATTTTTAATTTAATCACTAAATTATATAA
Found at i:73123725 original size:18 final size:18
Alignment explanation
Indices: 73123698--73123732 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
73123688 TTCATGAGGT
*
73123698 TGTGGTTGTGGTTGTGAC
1 TGTGGCTGTGGTTGTGAC
73123716 TGTGGCTGTGGTTGTGA
1 TGTGGCTGTGGTTGTGA
73123733 GGTTCTCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.06, G:0.46, T:0.43
Consensus pattern (18 bp):
TGTGGCTGTGGTTGTGAC
Found at i:73127763 original size:16 final size:18
Alignment explanation
Indices: 73127741--73127774 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73127731 AGAGAATAAT
*
73127741 AAAA-AGAAAAAAAAGAG
1 AAAAGAGAAAACAAAGAG
73127758 AAAAGAGAAAACAAAGA
1 AAAAGAGAAAACAAAGA
73127775 AGCAGAGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAAGAGAAAACAAAGAG
Found at i:73128726 original size:63 final size:63
Alignment explanation
Indices: 73128627--73128752 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
73128617 TATAGTCTAG
73128627 CTGGCTTGGTTCGATTTAGATAATATTGAATTGTAGAATTTTTATACTTTAAAATAATTATAA
1 CTGGCTTGGTTCGATTTAGATAATATTGAATTGTAGAATTTTTATACTTTAAAATAATTATAA
*
73128690 CTGGCTTGGTTCGATTTAGATAATATTGAATTGTAGAATTTTTATATTTTAAAATAATTATAA
1 CTGGCTTGGTTCGATTTAGATAATATTGAATTGTAGAATTTTTATACTTTAAAATAATTATAA
73128753 ATTCTTTTTA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (63 bp):
CTGGCTTGGTTCGATTTAGATAATATTGAATTGTAGAATTTTTATACTTTAAAATAATTATAA
Found at i:73128779 original size:14 final size:14
Alignment explanation
Indices: 73128757--73128789 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
73128747 TTATAAATTC
73128757 TTTTTATTTTT-AT
1 TTTTTATTTTTAAT
73128770 TTTTTAATTTTTAAT
1 TTTTT-ATTTTTAAT
73128785 TTTTT
1 TTTTT
73128790 TTTATATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 6 0.33
15 7 0.39
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTATTTTTAAT
Found at i:73129194 original size:18 final size:18
Alignment explanation
Indices: 73129173--73129217 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
73129163 ACTTTTTGAA
*
73129173 TTTTAAAAAGTTTTTATT
1 TTTTAAAAACTTTTTATT
* *
73129191 TTTTCATAATCTTTTTATT
1 TTTT-AAAAACTTTTTATT
73129210 TTTTAAAA
1 TTTTAAAA
73129218 CATAAATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTTAAAAACTTTTTATT
Found at i:73130009 original size:29 final size:30
Alignment explanation
Indices: 73129977--73130033 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
73129967 TCTCACAAAC
73129977 ATTTCTTCC-AAAATTT-TCAAAACTCTCAA
1 ATTTC-TCCTAAAATTTCTCAAAACTCTCAA
* *
73130006 ATTTCTCCTTAAATTTCTCAAAGCTCTC
1 ATTTCTCCTAAAATTTCTCAAAACTCTC
73130034 TTTAATTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 3 0.12
29 11 0.46
30 10 0.42
ACGTcount: A:0.32, C:0.26, G:0.02, T:0.40
Consensus pattern (30 bp):
ATTTCTCCTAAAATTTCTCAAAACTCTCAA
Found at i:73132891 original size:46 final size:47
Alignment explanation
Indices: 73132838--73133061 Score: 190
Period size: 46 Copynumber: 4.7 Consensus size: 47
73132828 TGATATATAT
* *
73132838 GCTAGTGTAAGACATGTCTGGGACATGCATCTACCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACAATGATGAGA
* * * **** *
73132884 GCTAGTGTAAGACATTTCGGGGACATGCATCGGCTTTGA-GACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACAATGATGAGA
* * *
73132930 GCTAGTGTAAGACATGTTTGGGACATGCATC-AGCCTCGAGAT-AT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CCAC-A-ATGATGA-GA
*
73132978 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGA-CATCAATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCA-CAAT-GATGAGA
* *
73133027 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGAC
73133062 TTTGATGTGC
Statistics
Matches: 142, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
46 65 0.46
47 4 0.03
48 29 0.20
49 42 0.30
50 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACAATGATGAGA
Found at i:73133038 original size:49 final size:47
Alignment explanation
Indices: 73132981--73133112 Score: 174
Period size: 49 Copynumber: 2.7 Consensus size: 47
73132971 TATACAAGCT
73132981 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCAAT-G-TGAGAGCC
* ** **
73133030 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATGTGAGAGCC
* *
73133077 AGTGTAAGACCATGTTTGGGACATGGCGTCGACATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACATC
73133113 TTATCCCATG
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
47 17 0.23
48 21 0.29
49 35 0.48
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATGTGAGAGCC
Found at i:73133050 original size:97 final size:97
Alignment explanation
Indices: 73132926--73133112 Score: 234
Period size: 97 Copynumber: 1.9 Consensus size: 97
73132916 GCTTTGAGAC
* * * *
73132926 GAGAGCTAGTGTAAGACATGTTTGGGACAT-GCATCAGCCTCGAGATATACAAGCTAGTGTAAGA
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATC-GACT-GAGATATACAAGCCAGTGTAAGA
73132990 CC-TGTCTGGGACATGGCATCGACATCAATAGAT
64 CCATGTCTGGGACATGGCATCGACATCAATAGAT
* ** * * *
73133023 GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTGAGATATACAAGCCAGTGTAAGACC
* *
73133088 ATGTTTGGGACATGGCGTCGACATC
66 ATGTCTGGGACATGGCATCGACATC
73133113 TTATCCCATG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
96 19 0.25
97 52 0.68
98 5 0.07
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (97 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTGAGATATACAAGCCAGTGTAAGACC
ATGTCTGGGACATGGCATCGACATCAATAGAT
Found at i:73135531 original size:22 final size:22
Alignment explanation
Indices: 73135506--73135549 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
73135496 GAAAACGATC
*
73135506 AAAATTAATAAAAATTTATTAT
1 AAAATTAATAAAAATTCATTAT
* *
73135528 AAAATTATTTAAAATTCATTAT
1 AAAATTAATAAAAATTCATTAT
73135550 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATAAAAATTCATTAT
Found at i:73136791 original size:47 final size:47
Alignment explanation
Indices: 73136731--73136876 Score: 172
Period size: 47 Copynumber: 3.1 Consensus size: 47
73136721 TATGGATATA
* * * *
73136731 TCAGCTCGAAAGAGCTTACTATTTTCAGCTTATTGGAGCTTACCGAT
1 TCAGCTCGTAAGAGCTTACTATTTTCAGCTCATTAGAGCTTACCAAT
* *
73136778 TCAGCTCGTAAGAGCTTACTGTTTTCAGCTCATTAGAGCTTATCAAT
1 TCAGCTCGTAAGAGCTTACTATTTTCAGCTCATTAGAGCTTACCAAT
* * * *
73136825 TCAGCTCGTAAAAGCTTACT-GTTT-AGCTCGA-AAGAGCTTACCATT
1 TCAGCTCGTAAGAGCTTACTATTTTCAGCTC-ATTAGAGCTTACCAAT
73136870 TCAGCTC
1 TCAGCTC
73136877 AATAGGGCCT
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
45 23 0.26
46 4 0.05
47 60 0.69
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (47 bp):
TCAGCTCGTAAGAGCTTACTATTTTCAGCTCATTAGAGCTTACCAAT
Found at i:73136808 original size:24 final size:23
Alignment explanation
Indices: 73136731--73136876 Score: 107
Period size: 23 Copynumber: 6.3 Consensus size: 23
73136721 TATGGATATA
* *
73136731 TCAGCTCGAAAGAGCTTACTATTT
1 TCAGCTCGTAAGAGCTTACT-GTT
** ** * *
73136755 TCAGCTTATTGGAGCTTACCGAT
1 TCAGCTCGTAAGAGCTTACTGTT
73136778 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCGTAAGAGCTTACTG-TT
* * **
73136802 TCAGCTCATTAGAGCTTA-TCAAT
1 TCAGCTCGTAAGAGCTTACT-GTT
*
73136825 TCAGCTCGTAAAAGCTTACTGTT
1 TCAGCTCGTAAGAGCTTACTGTT
* **
73136848 T-AGCTCGAAAGAGCTTACCATT
1 TCAGCTCGTAAGAGCTTACTGTT
73136870 TCAGCTC
1 TCAGCTC
73136877 AATAGGGCCT
Statistics
Matches: 91, Mismatches: 27, Indels: 9
0.72 0.21 0.07
Matches are distributed among these distances:
22 18 0.20
23 41 0.45
24 32 0.35
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (23 bp):
TCAGCTCGTAAGAGCTTACTGTT
Found at i:73137084 original size:20 final size:20
Alignment explanation
Indices: 73137059--73137119 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
73137049 GAATAAGCTA
73137059 TGTTGAAAT-AGATGAATTAC
1 TGTTGAAATGA-ATGAATTAC
73137079 TGTTGAAATGAATGAATTAC
1 TGTTGAAATGAATGAATTAC
* * *
73137099 TATTGATACGAATGAATTAC
1 TGTTGAAATGAATGAATTAC
73137119 T
1 T
73137120 ATTATTATTG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 36 0.97
21 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (20 bp):
TGTTGAAATGAATGAATTAC
Found at i:73137165 original size:20 final size:20
Alignment explanation
Indices: 73137070--73137166 Score: 65
Period size: 20 Copynumber: 4.8 Consensus size: 20
73137060 GTTGAAATAG
* * *
73137070 ATGAATTACTGTTGAAATGA
1 ATGAATTACAGTTTATATGA
* *
73137090 ATGAATTACTA-TTGATACGA
1 ATGAATTAC-AGTTTATATGA
*
73137110 ATGAATTACTATTATTAT-TG-
1 ATGAATTAC-AGT-TTATATGA
* * *
73137130 ATGAACTACTGGTTATATGA
1 ATGAATTACAGTTTATATGA
73137150 ATGAATTACAGTTTATA
1 ATGAATTACAGTTTATA
73137167 CAAATAAAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
18 4 0.07
19 2 0.03
20 49 0.82
21 2 0.03
22 3 0.05
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.39
Consensus pattern (20 bp):
ATGAATTACAGTTTATATGA
Found at i:73143910 original size:47 final size:47
Alignment explanation
Indices: 73143852--73144084 Score: 251
Period size: 47 Copynumber: 5.0 Consensus size: 47
73143842 TCGATATATC
* *
73143852 AGCTCAAAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGATTT
1 AGCTCATAAGAGCTTACTATTTTCAGCTCATTGGAGCTTACCGATTT
* * * *
73143899 AGCTCGTAAGAGCTTACTGTTTTTAGCTCATTGGAGCTTACCGATTC
1 AGCTCATAAGAGCTTACTATTTTCAGCTCATTGGAGCTTACCGATTT
* *
73143946 AGCTCATAAGAGCTTACTATTTTCAGCTTATTGGAGCTTACTGATTT
1 AGCTCATAAGAGCTTACTATTTTCAGCTCATTGGAGCTTACCGATTT
* * * *
73143993 CGCTCATATGAGCTTA-T-TGTTCAGCTCGA-TAGAGCTTACC-ATTT
1 AGCTCATAAGAGCTTACTATTTTCAGCTC-ATTGGAGCTTACCGATTT
* **
73144037 CAGCTCAATAA-AGCTTACTATTTATCAGCTTAGGAGGAGCTTACCGAT
1 -AGCTC-ATAAGAGCTTACTATTT-TCAGCTCA-TTGGAGCTTACCGAT
73144085 CATGGCTCAA
Statistics
Matches: 155, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
44 4 0.03
45 27 0.17
46 6 0.04
47 101 0.65
48 6 0.04
49 9 0.06
50 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (47 bp):
AGCTCATAAGAGCTTACTATTTTCAGCTCATTGGAGCTTACCGATTT
Found at i:73144059 original size:23 final size:22
Alignment explanation
Indices: 73143850--73144059 Score: 124
Period size: 23 Copynumber: 9.0 Consensus size: 22
73143840 TATCGATATA
* *
73143850 TCAGCTCAAAAGAGCTTACTGTTT
1 TCAGCTC-ATAGAGCTTACT-ATT
* *
73143874 TCAGCTCATTGGAGCTTACCGATT
1 TCAGCTCA-TAGAGCTTA-CTATT
* *
73143898 T-AGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCAT-AGAGCTTACT-ATT
* * *
73143921 TTAGCTCATTGGAGCTTACCGA-T
1 TCAGCTCA-TAGAGCTTA-CTATT
73143944 TCAGCTCATAAGAGCTTACTATTT
1 TCAGCTCAT-AGAGCTTACTA-TT
* *
73143968 TCAGCTTATTGGAGCTTACTGATT
1 TCAGCTCA-TAGAGCTTACT-ATT
73143992 TC-GCTCATATGAGCTTA-T-TGT
1 TCAGCTCATA-GAGCTTACTAT-T
*
73144013 TCAGCTCGATAGAGCTTACCATT
1 TCAGCTC-ATAGAGCTTACTATT
*
73144036 TCAGCTCAATAAAGCTTACTATT
1 TCAGCTC-ATAGAGCTTACTATT
73144059 T
1 T
73144060 ATCAGCTTAG
Statistics
Matches: 145, Mismatches: 23, Indels: 37
0.71 0.11 0.18
Matches are distributed among these distances:
20 1 0.01
21 3 0.02
22 18 0.12
23 67 0.46
24 51 0.35
25 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (22 bp):
TCAGCTCATAGAGCTTACTATT
Found at i:73144248 original size:20 final size:20
Alignment explanation
Indices: 73144223--73144262 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
73144213 TGAATAAGCT
*
73144223 ATGTTGAAATGGATGAATTA
1 ATGTTGAAATGAATGAATTA
73144243 ATGTTGAAATGAATGAATTA
1 ATGTTGAAATGAATGAATTA
73144263 CTATTGATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (20 bp):
ATGTTGAAATGAATGAATTA
Found at i:73144269 original size:20 final size:20
Alignment explanation
Indices: 73144226--73144269 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
73144216 ATAAGCTATG
* *
73144226 TTGAAATGGATGAATTAATG
1 TTGAAATGAATGAATTAATA
*
73144246 TTGAAATGAATGAATTACTA
1 TTGAAATGAATGAATTAATA
73144266 TTGA
1 TTGA
73144270 TACAGATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.20, T:0.36
Consensus pattern (20 bp):
TTGAAATGAATGAATTAATA
Found at i:73151314 original size:13 final size:13
Alignment explanation
Indices: 73151296--73151322 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73151286 GGGGTTGTTT
73151296 ATTAAACTAATTA
1 ATTAAACTAATTA
73151309 ATTAAACTAATTA
1 ATTAAACTAATTA
73151322 A
1 A
73151323 CTAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:73151319 original size:9 final size:9
Alignment explanation
Indices: 73151307--73151335 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
73151297 TTAAACTAAT
73151307 TAATTAAAC
1 TAATTAAAC
73151316 TAATT-AAC
1 TAATTAAAC
73151324 TAATTAAAC
1 TAATTAAAC
73151333 TAA
1 TAA
73151336 AGCAAAGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (9 bp):
TAATTAAAC
Found at i:73154809 original size:23 final size:21
Alignment explanation
Indices: 73154761--73154809 Score: 55
Period size: 23 Copynumber: 2.3 Consensus size: 21
73154751 CCAATACTCG
*
73154761 CAAAC-ATATACCAACCAATT
1 CAAACAATATACCAACCAACT
73154781 CAAACAATATAACCAAGCCAACT
1 CAAACAATAT-ACCAA-CCAACT
*
73154804 CTAACA
1 CAAACA
73154810 TCTAACTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 5 0.21
21 4 0.17
22 5 0.21
23 10 0.42
ACGTcount: A:0.51, C:0.31, G:0.02, T:0.16
Consensus pattern (21 bp):
CAAACAATATACCAACCAACT
Found at i:73158412 original size:15 final size:16
Alignment explanation
Indices: 73158392--73158421 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
73158382 ATAACCTTGA
73158392 TAAACCTCAT-TCATG
1 TAAACCTCATATCATG
73158407 TAAACCTCATATCAT
1 TAAACCTCATATCAT
73158422 CGATTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.33
Consensus pattern (16 bp):
TAAACCTCATATCATG
Found at i:73167009 original size:46 final size:48
Alignment explanation
Indices: 73166923--73167020 Score: 128
Period size: 46 Copynumber: 2.1 Consensus size: 48
73166913 GAATTAATCT
* *
73166923 TGTCTCCAATGCCATATATATATAATATGGGCTTACATGGCTCATTCC
1 TGTCTCCAAAGCCATATATATATAATATGGACTTACATGGCTCATTCC
* * * *
73166971 TGTCTCCAAAGCCATATA-A-CTGATATGGACTTATATGGCTCATTTC
1 TGTCTCCAAAGCCATATATATATAATATGGACTTACATGGCTCATTCC
73167017 TGTC
1 TGTC
73167021 CTGTCCTGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
46 26 0.59
47 1 0.02
48 17 0.39
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (48 bp):
TGTCTCCAAAGCCATATATATATAATATGGACTTACATGGCTCATTCC
Found at i:73174145 original size:42 final size:42
Alignment explanation
Indices: 73174057--73174184 Score: 134
Period size: 42 Copynumber: 3.1 Consensus size: 42
73174047 AGGCTGCACA
* * * * * * *
73174057 GAAGCACATAAGTGCTAAACGGAAACCCGTGAGGGTTGAACG
1 GAAGCTCATAAGAGCTTAACGGAAACCCATAAGGGTTAAACT
*
73174099 GAAGCTCATAAGAGCTTAACGGAAACCCATAAAGGTTAAACT
1 GAAGCTCATAAGAGCTTAACGGAAACCCATAAGGGTTAAACT
* * *
73174141 GAAGCTCAAAAGAG-TTGAACTGAAACCCATTAGGGTTAAA-T
1 GAAGCTCATAAGAGCTT-AACGGAAACCCATAAGGGTTAAACT
73174182 GAA
1 GAA
73174185 AACTCATATA
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
41 6 0.08
42 67 0.92
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.18
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTTAACGGAAACCCATAAGGGTTAAACT
Found at i:73174164 original size:21 final size:21
Alignment explanation
Indices: 73174091--73174160 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
73174081 ACCCGTGAGG
*
73174091 GTTGAACGGAAGCTCATAAGA
1 GTTGAACGGAAGCTCAAAAGA
* *
73174112 GCTT-AACGGAAACCCATAAAG-
1 G-TTGAACGGAAGCTCA-AAAGA
* *
73174133 GTTAAACTGAAGCTCAAAAGA
1 GTTGAACGGAAGCTCAAAAGA
73174154 GTTGAAC
1 GTTGAAC
73174161 TGAAACCCAT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
20 6 0.16
21 27 0.71
22 5 0.13
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (21 bp):
GTTGAACGGAAGCTCAAAAGA
Found at i:73185776 original size:46 final size:45
Alignment explanation
Indices: 73185702--73185830 Score: 174
Period size: 46 Copynumber: 2.8 Consensus size: 45
73185692 TGGCTATTTG
73185702 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGA
**
73185746 TGTAAGCTAGTGTAAGACATGTCTAAGACATGCATCGG-CTACGAGA
1 TGT--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGA
73185792 TGTG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
73185831 ATTATACCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 11
0.83 0.04 0.12
Matches are distributed among these distances:
43 1 0.01
44 13 0.18
45 14 0.19
46 46 0.62
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (45 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGA
Found at i:73187896 original size:125 final size:126
Alignment explanation
Indices: 73187357--73188000 Score: 864
Period size: 126 Copynumber: 5.1 Consensus size: 126
73187347 GCCAAGCACG
* * * * **
73187357 AACTATTGTAGAAAAAGAGTGTCCATGCAAAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * *
73187422 TACTTGAAGCGTTTTTGACACTATTTTTTTCAGAACCGTCTTTTCACAATTA-TTTTTCAGG
66 TGCTTGAAGCGTTTTTGACACTA-TTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
* *
73187483 AACTACTGTAGAAAAAGAGCGTCCATGTAGGAGCTTTTTTCAATAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * *
73187548 TGCTTGAAGCGTTTTTTACACTATTTTTTCAAAACCGTTTTCTCAAAATTATTTTTTCAGA
66 TGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
* * *
73187609 AACTACTGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTTAGTAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* *
73187674 TACTTGAAGCGCTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCA-A
66 TGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
* * * * * * * *
73187734 TAATTACTGTAGAAAAAAAGCATCCACGTGGGAGCTTTTTTCAATACTTTTGCTAACAGTGCATA
1 -AACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * * *
73187799 TTGCTTGAAGCGTTTTTGACATTAATTTTTCAGAACTGTCTTCTC-AAATTATTTTTTCAAA
65 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
* * * *
73187860 AATTACTATAGAAAAAGAGCGTCCACGTAGGAGC-TTTTTCAGTACTTTTGCTGACAGTGCATCT
1 AACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * *
73187924 TGCTTGAAACGTTTTTGTCACTATTTTTTCAGAACCGTTTTCTCAAAATTAATTTTTCAGA
66 TGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
*
73187985 AACTACTATAGAAAAA
1 AACTACTGTAGAAAAA
73188001 AAAATCATTC
Statistics
Matches: 460, Mismatches: 54, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
124 65 0.14
125 98 0.21
126 297 0.65
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (126 bp):
AACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
TGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGA
Found at i:73188122 original size:34 final size:35
Alignment explanation
Indices: 73188084--73188213 Score: 158
Period size: 34 Copynumber: 3.7 Consensus size: 35
73188074 CACAAAATTA
*
73188084 TTTTT-AAAAAATCCTAAACCCTAATTTAACTATT
1 TTTTTAAAAAAATCCTAAACCCTAATTTAATTATT
*
73188118 TTTTTAAAAAAATTCTAAACCCTAATTTAATTAATT
1 TTTTTAAAAAAATCCTAAACCCTAATTTAATT-ATT
* * * *
73188154 TATTT--AAAAACCCTAAAACCTAAATTAATTATTT
1 TTTTTAAAAAAATCCTAAACCCTAATTTAATTA-TT
*
73188188 TTTTTAAAAAAATTCTAAACCCTAAT
1 TTTTTAAAAAAATCCTAAACCCTAAT
73188214 GTATTTTTTA
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
33 1 0.01
34 32 0.41
35 24 0.30
36 22 0.28
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.41
Consensus pattern (35 bp):
TTTTTAAAAAAATCCTAAACCCTAATTTAATTATT
Found at i:73195420 original size:114 final size:113
Alignment explanation
Indices: 73195226--73195442 Score: 308
Period size: 114 Copynumber: 1.9 Consensus size: 113
73195216 ACGAAAATAG
* *
73195226 AAAAAGCGCCCACCATGGGGCTCGAACCCACAACCACAAGGTTAAGAGCCTTGCACTCTACCAAC
1 AAAAAGCGCCCACCATGAGGCTCGAACCCACAACCACAAGGTTAAGAGCCTTACACTCTACCAAC
* **
73195291 TGAGCTAGACGGGCTACTACGTTATTTTGCCTTCCTTATTAGAAAATT
66 TGAGCTAGACAGGCTACTACGCAATTTTGCCTTCCTTATTAGAAAATT
* * * * *
73195339 AAAAATGCGCCCACCGTGAGGTTCGAACCCACGACCACAAGGTTAAGAGCCTTACGCTCTACCGA
1 AAAAA-GCGCCCACCATGAGGCTCGAACCCACAACCACAAGGTTAAGAGCCTTACACTCTACCAA
* * *
73195404 TTGAGCTAGACAGGCTACTATGCAATTTTGCCTTGCTTA
65 CTGAGCTAGACAGGCTACTACGCAATTTTGCCTTCCTTA
73195443 GATTATAAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
113 5 0.06
114 85 0.94
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (113 bp):
AAAAAGCGCCCACCATGAGGCTCGAACCCACAACCACAAGGTTAAGAGCCTTACACTCTACCAAC
TGAGCTAGACAGGCTACTACGCAATTTTGCCTTCCTTATTAGAAAATT
Found at i:73195625 original size:141 final size:139
Alignment explanation
Indices: 73195333--73195627 Score: 360
Period size: 141 Copynumber: 2.1 Consensus size: 139
73195323 TCCTTATTAG
* * *
73195333 AAAATTAAAAATGCGCCCACCGTGAGGTTCGAACCCACGACCACAAGGTTAAGAGCCTTACGCTC
1 AAAA-TAAAAATGCGCCCACCGTGAGGTTCGAACCCAAGACCACAAGGGTAAGAGCCTTACGCTA
* * ** *
73195398 TACCGATTGAGCTAGACAGGCTACTATGCAATTTTGCCTTGCTTAGATTATAAATACATAAAATT
65 TACCGACTAAGCTAGACAGGCTACTATGCAATTTCACCTTGCTTACATTATAAATACATAAAATT
* *
73195463 ATTAGAATAT
130 ATTACAAGAT
* * * *
73195473 AAAATAGAAAATTCGCCCTCCTTG-GAGTTCGAACCCCAAGACCACAAGGGTAAGAGCCTTGCGC
1 AAAATA-AAAATGCGCCCACCGTGAG-GTTCGAA-CCCAAGACCACAAGGGTAAGAGCCTTACGC
** *
73195537 TATACCGACTAAGCTAGAC-GAGCTACTATGCTGTTTCACCTTGCTTACATTTATAAATACGTAA
63 TATACCGACTAAGCTAGACAG-GCTACTATGCAATTTCACCTTGCTTACA-TTATAAATACATAA
*
73195601 ACTTATTACAAGAT
126 AATTATTACAAGAT
73195615 AAAATAAAAATGC
1 AAAATAAAAATGC
73195628 TCGCACCCAC
Statistics
Matches: 131, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
139 3 0.02
140 26 0.20
141 72 0.55
142 30 0.23
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.26
Consensus pattern (139 bp):
AAAATAAAAATGCGCCCACCGTGAGGTTCGAACCCAAGACCACAAGGGTAAGAGCCTTACGCTAT
ACCGACTAAGCTAGACAGGCTACTATGCAATTTCACCTTGCTTACATTATAAATACATAAAATTA
TTACAAGAT
Found at i:73198270 original size:13 final size:13
Alignment explanation
Indices: 73198246--73198277 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73198236 ATAACACATT
73198246 TCAAAA-TATGCA
1 TCAAAACTATGCA
73198258 TCAAAACTATGCA
1 TCAAAACTATGCA
73198271 -CAAAACT
1 TCAAAACT
73198278 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:73205343 original size:12 final size:13
Alignment explanation
Indices: 73205328--73205359 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73205318 ATAACACATT
73205328 TCAAAAC-ATGCA
1 TCAAAACTATGCA
73205340 TCAAAACTATGCA
1 TCAAAACTATGCA
73205353 -CAAAACT
1 TCAAAACT
73205360 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:73205951 original size:44 final size:43
Alignment explanation
Indices: 73205819--73205977 Score: 139
Period size: 44 Copynumber: 3.7 Consensus size: 43
73205809 AAATACCGAC
* * * * *
73205819 GTCCCAAACGTGGTCTTACATGT-AATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATTCA-AATCGATGCCTGT
* * * *
73205862 GTCCTAGACAGGGTCTTATACG-AAA-ACAAATACGATGCC-GAT
1 GTCCCAGACATGGTCTTACACGTAAATTCAAAT-CGATGCCTG-T
73205904 GTCCCAGACATGGTCTTACACGTAAATTTCAAATCGATGCCTGT
1 GTCCCAGACATGGTCTTACACGTAAA-TTCAAATCGATGCCTGT
**
73205948 GTCCCAGACACAGTCTTACACG-ATAATTCA
1 GTCCCAGACATGGTCTTACACGTA-AATTCA
73205978 GGTCAATACC
Statistics
Matches: 93, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
41 2 0.02
42 29 0.31
43 26 0.28
44 30 0.32
45 6 0.06
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATTCAAATCGATGCCTGT
Found at i:73205964 original size:86 final size:85
Alignment explanation
Indices: 73205814--73205970 Score: 199
Period size: 86 Copynumber: 1.8 Consensus size: 85
73205804 AAGTAAAATA
* * * * **
73205814 CCGACGTCCCAAACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCTAGACAGGGTCTT
1 CCGACGTCCCAAACATGGTCTTACACGTAATTCAGAATCGATGCCTCTGTCCCAGACACAGTCTT
*
73205879 ATACGAAAACAAATACGATG
66 ACACGAAAACAAATACGATG
* * *
73205899 CCGATGTCCCAGACATGGTCTTACACGTAAATTTCA-AATCGATGCCTGTGTCCCAGACACAGTC
1 CCGACGTCCCAAACATGGTCTTACACGT-AA-TTCAGAATCGATGCCTCTGTCCCAGACACAGTC
73205963 TTACACGA
64 TTACACGA
73205971 TAATTCAGGT
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 24 0.40
86 32 0.53
87 4 0.07
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (85 bp):
CCGACGTCCCAAACATGGTCTTACACGTAATTCAGAATCGATGCCTCTGTCCCAGACACAGTCTT
ACACGAAAACAAATACGATG
Found at i:73207734 original size:22 final size:22
Alignment explanation
Indices: 73207709--73207825 Score: 90
Period size: 22 Copynumber: 5.3 Consensus size: 22
73207699 GCACTAAGTC
* *
73207709 AACAGGACGGCTTAACGTTGTA
1 AACAGGACGGCTCAACGTCGTA
*
73207731 AACAGGACGGCTCAACGTCGTG
1 AACAGGACGGCTCAACGTCGTA
* **
73207753 GACAGGACGGCTCAACACCGTA
1 AACAGGACGGCTCAACGTCGTA
* * * * *
73207775 GATAGGATGACTTAACGTCGTA
1 AACAGGACGGCTCAACGTCGTA
* * * *
73207797 GACAAGACGACTCAACGTAGTA
1 AACAGGACGGCTCAACGTCGTA
*
73207819 GACAGGA
1 AACAGGA
73207826 TAGCTAAAGG
Statistics
Matches: 76, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 76 1.00
ACGTcount: A:0.33, C:0.22, G:0.28, T:0.16
Consensus pattern (22 bp):
AACAGGACGGCTCAACGTCGTA
Found at i:73212933 original size:50 final size:50
Alignment explanation
Indices: 73212848--73213062 Score: 211
Period size: 50 Copynumber: 4.3 Consensus size: 50
73212838 GCTAAATGAC
* * * * * *
73212848 CTTGTATATTCGTCCACATAGGTACGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
* * * *
73212898 CTTGAATATTCGGCCATGA-AGGTATGCACAAATGTGATATTATATTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTATATTGGAT
* * * * * * * *
73212948 -TTGTATATTCGACGATATAAGTAAGTACATATGTGTTGTTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
*
73212997 CTT-TCATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAT
1 CTTGT-ATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
*
73213047 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
73213063 AATGAGTGAT
Statistics
Matches: 131, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
48 1 0.01
49 36 0.27
50 92 0.70
51 2 0.02
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
Found at i:73213020 original size:99 final size:100
Alignment explanation
Indices: 73212848--73213056 Score: 262
Period size: 99 Copynumber: 2.1 Consensus size: 100
73212838 GCTAAATGAC
* * * **
73212848 CTTGTATATTCGTCCACATAGGTACGTACATATGTGATGTTGTATTGGATCTTGAATATTCGGCC
1 CTTGTATATTCGACCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGGCC
*
73212913 ATGAAGGTATGCACAAATGTGATATTATA-TTGAAT
66 ATGAAGGTAAGCACAAATGTGATATTATATTTG-AT
* * * * **
73212948 -TTGTATATTCGACGATATAAGTAAGTACATATGTGTTGTTAAATTTGATCTTTCATATTCGGCC
1 CTTGTATATTCGACCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGGCC
*
73213012 AT-ATAGGTAAGCACATATGTGATATTATATTTGAT
66 ATGA-AGGTAAGCACAAATGTGATATTATATTTGAT
73213047 CTTGTATATT
1 CTTGTATATT
73213057 TGGCCAAATG
Statistics
Matches: 93, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
98 1 0.01
99 80 0.86
100 12 0.13
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (100 bp):
CTTGTATATTCGACCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGGCC
ATGAAGGTAAGCACAAATGTGATATTATATTTGAT
Found at i:73213585 original size:22 final size:22
Alignment explanation
Indices: 73213523--73213586 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 22
73213513 TAAGGGACAT
73213523 TGTGA-ATGTTT-TGAATATG-A
1 TGTGATATGTTTAT-AATATGTA
* *
73213543 TTTGATAATGTGTTA-ACTATGTA
1 TGTGAT-ATGT-TTATAATATGTA
73213566 TGTGATATGTTTATAATATGT
1 TGTGATATGTTTATAATATGT
73213587 TATGATTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
20 4 0.12
21 3 0.09
22 19 0.56
23 8 0.24
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (22 bp):
TGTGATATGTTTATAATATGTA
Found at i:73220556 original size:21 final size:24
Alignment explanation
Indices: 73220511--73220566 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 24
73220501 AGACAAATAG
73220511 ATTGGTATGATATTAGTTCATGAA
1 ATTGGTATGATATTAGTTCATGAA
*
73220535 ATTGGTATG-T-TTCGTT-ATGAA
1 ATTGGTATGATATTAGTTCATGAA
73220556 ATTGAGTATGA
1 ATTG-GTATGA
73220567 AATTTATTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 9 0.31
22 10 0.34
23 1 0.03
24 9 0.31
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (24 bp):
ATTGGTATGATATTAGTTCATGAA
Found at i:73221219 original size:22 final size:22
Alignment explanation
Indices: 73221157--73221220 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 22
73221147 TAAGGGACAT
73221157 TGTGA-ATGTTT-TGAATATG-A
1 TGTGATATGTTTAT-AATATGTA
* *
73221177 TTTGATAATGTGTTA-ACTATGTA
1 TGTGAT-ATGT-TTATAATATGTA
73221200 TGTGATATGTTTATAATATGT
1 TGTGATATGTTTATAATATGT
73221221 TATGATTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
20 4 0.12
21 3 0.09
22 19 0.56
23 8 0.24
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (22 bp):
TGTGATATGTTTATAATATGTA
Found at i:73221609 original size:51 final size:51
Alignment explanation
Indices: 73221533--73221634 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
73221523 TACATTTTAA
73221533 GATAATTTGGCACTTAAGCTATGAAACATAAAAGTGAGCTTTATCATCACT
1 GATAATTTGGCACTTAAGCTATGAAACATAAAAGTGAGCTTTATCATCACT
73221584 GATAATTTGGCACTTAAGCTATGAAACATAAAAGTGAGCTTTATCATCACT
1 GATAATTTGGCACTTAAGCTATGAAACATAAAAGTGAGCTTTATCATCACT
73221635 CATCAGATAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (51 bp):
GATAATTTGGCACTTAAGCTATGAAACATAAAAGTGAGCTTTATCATCACT
Found at i:73223549 original size:13 final size:13
Alignment explanation
Indices: 73223533--73223558 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73223523 TTTTTACCTT
73223533 TTAATTTTCTTAG
1 TTAATTTTCTTAG
73223546 TTAATTTTCTTAG
1 TTAATTTTCTTAG
73223559 ATAAAATCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
TTAATTTTCTTAG
Found at i:73235723 original size:39 final size:39
Alignment explanation
Indices: 73235669--73235766 Score: 169
Period size: 39 Copynumber: 2.5 Consensus size: 39
73235659 TGTTTATCCA
* *
73235669 GACTTAAGGTCCGCAGGCTATATGCTGGAATTATATCTG
1 GACTTAAGGTCCGCAGGCTATATGCTGGAATTATAACCG
*
73235708 GACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCG
1 GACTTAAGGTCCGCAGGCTATATGCTGGAATTATAACCG
73235747 GACTTAAGGTCCGCAGGCTA
1 GACTTAAGGTCCGCAGGCTA
73235767 CGTGCTAGAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
GACTTAAGGTCCGCAGGCTATATGCTGGAATTATAACCG
Found at i:73235772 original size:39 final size:39
Alignment explanation
Indices: 73235669--73235824 Score: 163
Period size: 39 Copynumber: 4.0 Consensus size: 39
73235659 TGTTTATCCA
** * *
73235669 GACTTAAGGTCCGCAGGCTATATGCTGGAATTATATCTG
1 GACTTAAGGTCCGCAGGCTACGTGCTGGAATTATAACCG
*
73235708 GACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCG
1 GACTTAAGGTCCGCAGGCTACGTGCTGGAATTATAACCG
* * **
73235747 GACTTAAGGTCCGCAGGCTACGTGCTAGAAATATGTCCG
1 GACTTAAGGTCCGCAGGCTACGTGCTGGAATTATAACCG
* * * * *
73235786 GGC-TAAAGTCCCGCAGGCTTCGAGCTGGTATTAT-ACCG
1 GACTTAAGGT-CCGCAGGCTACGTGCTGGAATTATAACCG
73235824 G
1 G
73235825 GTTTAAATTC
Statistics
Matches: 100, Mismatches: 16, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
38 9 0.09
39 91 0.91
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
GACTTAAGGTCCGCAGGCTACGTGCTGGAATTATAACCG
Found at i:73235813 original size:78 final size:77
Alignment explanation
Indices: 73235669--73235824 Score: 181
Period size: 78 Copynumber: 2.0 Consensus size: 77
73235659 TGTTTATCCA
* * * * * *
73235669 GACTTAAGGTCCGCAGGCTATATGCTGGAATTATATCTGGACTTAAGGTCCGCAGGCTATGTGCT
1 GACTTAAGGTCCGCAGGCTACATGCTAGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAGCT
73235734 GGAATTATAACCG
66 GGAATTAT-ACCG
* * *
73235747 GACTTAAGGTCCGCAGGCTACGTGCTAGAAATATGTCCGGGC-TAAAGTCCCGCAGGCT-TCGAG
1 GACTTAAGGTCCGCAGGCTACATGCTAGAAATATATCCGGACTTAAAGT-CCGCAGGCTAT-GAG
*
73235810 CTGGTATTATACCG
64 CTGGAATTATACCG
73235824 G
1 G
73235825 GTTTAAATTC
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
77 11 0.17
78 55 0.83
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (77 bp):
GACTTAAGGTCCGCAGGCTACATGCTAGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAGCT
GGAATTATACCG
Found at i:73238601 original size:25 final size:26
Alignment explanation
Indices: 73238558--73238611 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 26
73238548 TTCTCCTAAA
73238558 TTTCAATTTTATTTGATTATTTAAT-T
1 TTTCAATTTTATTTGATTA-TTAATAT
73238584 TTTCAA-TTTA-TTGAATTATTAATAT
1 TTTCAATTTTATTTG-ATTATTAATAT
73238609 TTT
1 TTT
73238612 ATGCAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.31
25 12 0.46
26 6 0.23
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (26 bp):
TTTCAATTTTATTTGATTATTAATAT
Found at i:73242634 original size:27 final size:27
Alignment explanation
Indices: 73242594--73242705 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
73242584 AGGAAGCGTC
*
73242594 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
73242621 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* **
73242648 CTGGTAGCTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* ** *
73242676 CTGGTGACTCTATCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
73242702 CTGG
1 CTGG
73242706 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.67
28 15 0.21
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:73252794 original size:42 final size:42
Alignment explanation
Indices: 73252690--73252798 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
73252680 CGTACAATGC
* *
73252690 CAACATCCCAGACCTGGTCTTACATGTAAACAAATATCGATG
1 CAACGTCCCAGACATGGTCTTACATGTAAACAAATATCGATG
* *
73252732 CCACTGTCCCAGACAAGGTCTTACATG-AAATCAAATA-CGATG
1 CAAC-GTCCCAGACATGGTCTTACATGTAAA-CAAATATCGATG
* *
73252774 CTAACGTCCCAAACGTGGTCTTACA
1 C-AACGTCCCAGACATGGTCTTACA
73252799 CGTAGCTCAT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
42 29 0.52
43 27 0.48
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
CAACGTCCCAGACATGGTCTTACATGTAAACAAATATCGATG
Found at i:73254836 original size:24 final size:24
Alignment explanation
Indices: 73254802--73254848 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
73254792 AATAGGAAGA
*
73254802 TATTTTTTTATTTTGTT-ATTTAT
1 TATTTTTTTATTTTATTAATTTAT
73254825 TATTTATTTTATTTTATTAATTTA
1 TATTT-TTTTATTTTATTAATTTA
73254849 GGTTAAGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 11 0.52
25 5 0.24
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (24 bp):
TATTTTTTTATTTTATTAATTTAT
Found at i:73257155 original size:31 final size:31
Alignment explanation
Indices: 73257117--73257195 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
73257107 TTTAACGGTT
73257117 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
73257148 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
73257179 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
73257196 ACTATAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:73257278 original size:42 final size:42
Alignment explanation
Indices: 73257219--73257310 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
73257209 TGGCCCTTAG
* *** *
73257219 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
73257261 GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
73257303 GCCCATTT
1 GCCCATTT
73257311 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
Found at i:73257526 original size:26 final size:26
Alignment explanation
Indices: 73257455--73257577 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
73257445 CCTCTTTAAT
* *
73257455 AACTGGGG-AAAAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
73257480 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
73257505 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
73257531 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
73257557 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
73257578 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
25 32 0.36
26 58 0.64
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:73258462 original size:27 final size:27
Alignment explanation
Indices: 73258383--73258469 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
73258373 TATTCGTCAA
* *
73258383 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
73258410 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
* *
73258437 TTTACCCTATAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
73258464 TTTACC
1 TTTACC
73258470 TAATAGGGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:73258553 original size:27 final size:27
Alignment explanation
Indices: 73258500--73258981 Score: 188
Period size: 27 Copynumber: 17.8 Consensus size: 27
73258490 TTTCATCCTA
* * * * * *
73258500 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
73258527 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
73258554 CAATGGTATTTCCA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
73258583 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
73258610 CAGGGGTATTTTGGTAATTTTACAAATT
1 CAAGGGTATTTTAGTAATTTTATAAA-T
* ** * *
73258638 GAA-GGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
73258663 C-TGGTGATATTTTGGTAATTTTACAAA-
1 CAAGG-G-TATTTTAGTAATTTTATAAAT
* * *
73258690 CTAGGGGTATTTTGGTAATTTTACAAATT
1 C-AAGGGTATTTTAGTAATTTTATAAA-T
* * * *
73258719 GAA-GGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
73258745 CAGGGGTATTTTAGCAATTTTATAGA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * **
73258771 CTAGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
73258798 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
73258825 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* **** * *
73258852 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *** *
73258879 TAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* **** *
73258906 CGAGGGTAAAAAAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *** * *
73258933 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
73258960 CGAGGGTACTTTGGTAATTTTA
1 CAAGGGTATTTTAGTAATTTTA
73258982 CAATTTGAGG
Statistics
Matches: 364, Mismatches: 76, Indels: 30
0.77 0.16 0.06
Matches are distributed among these distances:
25 1 0.00
26 24 0.07
27 304 0.84
28 19 0.05
29 16 0.04
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:73258708 original size:81 final size:81
Alignment explanation
Indices: 73258611--73258792 Score: 269
Period size: 81 Copynumber: 2.3 Consensus size: 81
73258601 TTTGTAAATC
* *
73258611 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAA-CTGGTGATATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTCACAAACCAGG-GATATTT
* *
73258675 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
* *
73258692 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTTACAAACCAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTCACAAACCAGGGATATTTT
* *
73258757 AGCAATTTTATAGACT
66 AGCAATTTTACAAACT
73258773 A-GGGTATTTTGGTAATTTTA
1 AGGGGTATTTTGGTAATTTTA
73258793 TTGATCGAGG
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
80 19 0.21
81 70 0.76
82 3 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTCACAAACCAGGGATATTTT
AGCAATTTTACAAACT
Found at i:73258869 original size:54 final size:54
Alignment explanation
Indices: 73258811--73258967 Score: 215
Period size: 54 Copynumber: 2.9 Consensus size: 54
73258801 GGGTATTTTG
* *** * * *
73258811 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAAA
* *
73258865 GTAATTCTGTAAATTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAAA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAAA
* *
73258919 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
73258968 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (54 bp):
GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAAA
Found at i:73259003 original size:81 final size:81
Alignment explanation
Indices: 73258782--73259012 Score: 219
Period size: 81 Copynumber: 2.9 Consensus size: 81
73258772 TAGGGTATTT
* ** * * * * *
73258782 TGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTG
1 TGGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTAAGTAATTTTG
73258847 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
** * ** ** * * ***
73258863 CAGTAATTCTGTAAATTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAAAGTAATTTTG
1 TGGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTAAGTAATTTTG
73258928 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * * * *
73258944 TGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAATTTGAGGGCATTTCAGTAATTTGG
1 TGGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTAAGTAATTTTG
73259009 TAAA
66 TAAA
73259013 CTAAAATATT
Statistics
Matches: 111, Mismatches: 39, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
81 111 1.00
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.36
Consensus pattern (81 bp):
TGGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTAAGTAATTTTG
TAAATCGAGGGTAAAA
Found at i:73272828 original size:15 final size:16
Alignment explanation
Indices: 73272797--73272827 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73272787 ATTAAATTCC
73272797 TACCCAAAAACCAAAA
1 TACCCAAAAACCAAAA
*
73272813 TACCCAAAACCCAAA
1 TACCCAAAAACCAAA
73272828 TCCAATAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.35, G:0.00, T:0.06
Consensus pattern (16 bp):
TACCCAAAAACCAAAA
Found at i:73273065 original size:16 final size:15
Alignment explanation
Indices: 73273042--73273073 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
73273032 AAAATAAACC
73273042 AAATAAAAAATTAAA
1 AAATAAAAAATTAAA
73273057 AAATAAAAAAATTAAA
1 AAAT-AAAAAATTAAA
73273073 A
1 A
73273074 CACCCCAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
AAATAAAAAATTAAA
Found at i:73273125 original size:9 final size:9
Alignment explanation
Indices: 73273098--73273127 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
73273088 ATTCCCCAAC
73273098 TCATCTTCT
1 TCATCTTCT
*
73273107 CCATCTTCT
1 TCATCTTCT
73273116 TCATCTTCT
1 TCATCTTCT
73273125 TCA
1 TCA
73273128 AAACAAAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.13, C:0.37, G:0.00, T:0.50
Consensus pattern (9 bp):
TCATCTTCT
Found at i:73279472 original size:49 final size:49
Alignment explanation
Indices: 73279403--73279497 Score: 163
Period size: 49 Copynumber: 1.9 Consensus size: 49
73279393 AATGTTCGTA
*
73279403 TTATTTTTGTATCTGTAAATCAATGTTGGTCCATATTATTTGTTGGATT
1 TTATTTTTGTATATGTAAATCAATGTTGGTCCATATTATTTGTTGGATT
* *
73279452 TTATTTTTTTATATGTAAATCAATTTTGGTCCATATTATTTGTTGG
1 TTATTTTTGTATATGTAAATCAATGTTGGTCCATATTATTTGTTGG
73279498 TCGAATTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.23, C:0.07, G:0.15, T:0.55
Consensus pattern (49 bp):
TTATTTTTGTATATGTAAATCAATGTTGGTCCATATTATTTGTTGGATT
Found at i:73290408 original size:48 final size:47
Alignment explanation
Indices: 73290353--73290683 Score: 303
Period size: 48 Copynumber: 6.9 Consensus size: 47
73290343 GGTGAATTGT
* * *
73290353 CGATGCCATGTTCCAAACATGGTCTTACACTGGCT-TACATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATATC-ATGC
* * *
73290401 CGATGCCATGTCCCAGGCATGGTCTTACACTAGCTCTCATCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGC
** * *
73290449 TAATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATATCAATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATATC-ATGC
* ** * *
73290497 TGACACCATGTCCCAGACATGGTCTTACATTGGCTCTCAT-TACATTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-CA-TGC
* * * * *
73290545 TGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCAT-TACATTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-CA-TGC
* * * *
73290593 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAT-GC
* *
73290641 CGA-GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
73290684 CTCAAATGCC
Statistics
Matches: 242, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
47 38 0.16
48 201 0.83
49 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGC
Found at i:73290618 original size:144 final size:143
Alignment explanation
Indices: 73290402--73290673 Score: 345
Period size: 144 Copynumber: 1.9 Consensus size: 143
73290392 TATCGAGGCC
** *
73290402 GATGCCATGTCCCAGGCATGGTCTTACACTAGCTCTCATCTCAATGCTAATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTCAATGCTAATGCCATGTCCCAAAC
* *
73290467 ATGGTCTTACACTAGCT-TACATATCAAT-ACTGACACCATGTCCCAGACATGGTCTTACATTGG
66 ATGGTCTTACACTAGCTCT-CATATC-ATGACCGA-ACCATGTCCCAGACATGGTCTTACACTGG
73290530 CTCTCATTACATTGTT
128 CTCTCATTACATTGTT
* * * * * *
73290546 GATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCAT-TACATTG-TCGATGCCATGTTCCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCT-CAATGCT-AATGCCATGTCCCAA
* * *
73290609 ACATGGTCTTACACTAGCTCTCATATCGTGGCCGAGCCATGTCCCAGACATGGTCTTACACTGGC
64 ACATGGTCTTACACTAGCTCTCATATCATGACCGAACCATGTCCCAGACATGGTCTTACACTGGC
73290674 ACACATATCA
Statistics
Matches: 110, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
143 31 0.28
144 78 0.71
145 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (143 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTCAATGCTAATGCCATGTCCCAAAC
ATGGTCTTACACTAGCTCTCATATCATGACCGAACCATGTCCCAGACATGGTCTTACACTGGCTC
TCATTACATTGTT
Found at i:73292698 original size:55 final size:53
Alignment explanation
Indices: 73292611--73292865 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 53
73292601 ATTAGGGTTT
*
73292611 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAAGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGT-AAGTTTCTAAGGC
* * * * * *
73292666 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
73292721 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
*
73292774 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* *
73292823 AAGGATACCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
73292866 GTACCCGTGT
Statistics
Matches: 171, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
49 41 0.24
52 7 0.04
53 42 0.25
54 10 0.06
55 67 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:73292817 original size:108 final size:110
Alignment explanation
Indices: 73292618--73292818 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
73292608 TTTAAGGATA
*
73292618 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAAGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAAGTTTCTAAGGCAAGGAAACCATGTAAGA
*
73292683 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
73292728 CCATGTAAGACCATGCCAAGGCATGG-CATTGGT-GAG-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAAGTTTC-TAAGGCAAGGAAACCATGTAAG
*
73292790 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
73292819 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 49 0.58
109 6 0.07
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAAGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:73292960 original size:23 final size:24
Alignment explanation
Indices: 73292934--73292978 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
73292924 AAGGTAAGGT
*
73292934 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
73292957 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
73292979 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:73315220 original size:48 final size:48
Alignment explanation
Indices: 73315148--73315480 Score: 264
Period size: 48 Copynumber: 6.9 Consensus size: 48
73315138 AGGATGAATT
* * * * * *
73315148 GCCGATACCATGTTCCAAATATGGTCTTACATTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAG
* * * *
73315196 GCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCTTAAT-GTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAG
* * * * * *
73315244 GCTGATGCCATGTCCCAAACATGGTCTTACACTAG-TGCACAAATCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-CTCATATCGAG
* * * *
73315292 GCCGATGCAATGTCCCAGACATGGTCATACACTGGCTCTCAT-TAC-ATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGA-G
** * *
73315340 ATCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-TAC-ATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGA-G
** * * *
73315388 GTTGATCCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAG
* * * * *
73315436 GCCGATGCCATGTCCTAGACATGGTCTTACAATGGCACACATATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC
73315481 ACCCAAATGT
Statistics
Matches: 230, Mismatches: 47, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
47 5 0.02
48 222 0.97
49 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAG
Found at i:73315323 original size:96 final size:95
Alignment explanation
Indices: 73315196--73315473 Score: 294
Period size: 96 Copynumber: 2.9 Consensus size: 95
73315186 ACATGTCGAG
*
73315196 GCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCTTAATGTGGCTGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAATGTGGC-GATGCCATGTCCCA
73315261 AACATGGTCTTACACTAGTGCAC-AAAT-CAAT
65 AACATGGTCTTACACT-G-GCACTAAATACAAT
* * ** *
73315292 GCCGATGCAATGTCCCAGACATGGTCATACACTGGCTCTCATTACAT-TATCGATGCCATGTTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TTA-ATGTGGCGATGCCATGTCCC
* * * *
73315356 AAACATGGTCTTACACTGGCTCTCATTACATT
64 AAACATGGTCTTACACTGGCACTAAATACAAT
** * * * * *
73315388 GTTGATCCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGCCGATGCCATGTCCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAAT-GTGG-CGATGCCATGTCCC
* *
73315452 AGACATGGTCTTACAATGGCAC
64 AAACATGGTCTTACACTGGCAC
73315474 ACATATCACC
Statistics
Matches: 150, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
93 2 0.01
94 3 0.02
95 5 0.03
96 133 0.89
97 5 0.03
98 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAATGTGGCGATGCCATGTCCCAA
ACATGGTCTTACACTGGCACTAAATACAAT
Found at i:73315440 original size:144 final size:144
Alignment explanation
Indices: 73315198--73315471 Score: 358
Period size: 144 Copynumber: 1.9 Consensus size: 144
73315188 ATGTCGAGGC
* * *
73315198 CGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCTTAATGTGGCTGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCTTAATGTGGCTGATCCCATGTCCCAAA
*
73315263 CATGGTCTTACACTAGTGCACAAATCAATGCCGATGCAATGTCCCAGACATGGTCATACACTGGC
66 CATGGTCTTACACTAGTGCACAAATCAATGCCGATGCAATGTCCCAGACATGGTCATACAATGGC
73315328 TCTCATTACATTAT
131 TCTCATTACATTAT
* * *
73315342 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATTACAT-T-GTTGATCCCATGTTCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTC-TTA-ATGTGGCTGATCCCATGTCCCA
* * * * * * *
73315405 AACATGGTCTTACACTGGCT-CTCATATC-GTGGCCGATGCCATGTCCTAGACATGGTCTTACAA
64 AACATGGTCTTACACTAG-TGCACAAATCAAT-GCCGATGCAATGTCCCAGACATGGTCATACAA
73315468 TGGC
127 TGGC
73315472 ACACATATCA
Statistics
Matches: 112, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
143 1 0.01
144 104 0.93
145 5 0.04
146 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (144 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCTTAATGTGGCTGATCCCATGTCCCAAA
CATGGTCTTACACTAGTGCACAAATCAATGCCGATGCAATGTCCCAGACATGGTCATACAATGGC
TCTCATTACATTAT
Found at i:73318751 original size:50 final size:51
Alignment explanation
Indices: 73318613--73318752 Score: 185
Period size: 50 Copynumber: 2.8 Consensus size: 51
73318603 TGAGGTCGTA
*
73318613 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAGATAACTTAGATCACG
* * * ** *
73318664 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGATCACG
*
73318714 TGTGTAGTACTAAGTGCAGGCTACTATGCGTGCCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
73318753 GCTTTGGCTA
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
50 43 0.57
51 33 0.43
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGATCACG
Found at i:73320326 original size:20 final size:21
Alignment explanation
Indices: 73320287--73320326 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
73320277 AAATCGATAT
**
73320287 CTTAGGAAAATTTTGGGAAAA
1 CTTAGGAAAATTTTACGAAAA
73320308 CTTA-GAAAATTTTACGAAA
1 CTTAGGAAAATTTTACGAAA
73320327 TACAGGGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.30
Consensus pattern (21 bp):
CTTAGGAAAATTTTACGAAAA
Found at i:73328165 original size:26 final size:26
Alignment explanation
Indices: 73328136--73328214 Score: 70
Period size: 26 Copynumber: 3.0 Consensus size: 26
73328126 TTTGCCATAT
73328136 ATACTGATACTGGCAGCGTTGCTGCG
1 ATACTGATACTGGCAGCGTTGCTGCG
* * * * * *
73328162 ATACTGTTACTAGTAGCTTTGATGTG
1 ATACTGATACTGGCAGCGTTGCTGCG
* *
73328188 TTA-TTATTACTGGCAGCGTTGCTGCG
1 ATACTGA-TACTGGCAGCGTTGCTGCG
73328214 A
1 A
73328215 CATTGGTGTG
Statistics
Matches: 37, Mismatches: 15, Indels: 2
0.69 0.28 0.04
Matches are distributed among these distances:
25 1 0.03
26 36 0.97
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (26 bp):
ATACTGATACTGGCAGCGTTGCTGCG
Found at i:73328287 original size:22 final size:22
Alignment explanation
Indices: 73328255--73328297 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
73328245 TGTCCCCACA
* *
73328255 TGGTGTGTTGGTTGGTATGGAG
1 TGGTGTATTGGCTGGTATGGAG
*
73328277 TGGTGTATTGGCTGGTTTGGA
1 TGGTGTATTGGCTGGTATGGA
73328298 TTGGGTTGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.09, C:0.02, G:0.47, T:0.42
Consensus pattern (22 bp):
TGGTGTATTGGCTGGTATGGAG
Found at i:73331989 original size:27 final size:27
Alignment explanation
Indices: 73331954--73332013 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
73331944 AAGTATACTG
* *
73331954 TACTAGTGGCTTTAACACATATGCTGT
1 TACTGGTGGCTTTAACACATATGCTGA
**
73331981 TACTGGTGGCTTTGCCACATATGCTGA
1 TACTGGTGGCTTTAACACATATGCTGA
73332008 TACTGG
1 TACTGG
73332014 CAGCTTTGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTTTAACACATATGCTGA
Found at i:73332019 original size:27 final size:27
Alignment explanation
Indices: 73331969--73332022 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
73331959 GTGGCTTTAA
* **
73331969 CACATATGCTGTTACTGGTGGCTTTGC
1 CACATATGCTGATACTGGCAGCTTTGC
73331996 CACATATGCTGATACTGGCAGCTTTGC
1 CACATATGCTGATACTGGCAGCTTTGC
73332023 TGTGATACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
CACATATGCTGATACTGGCAGCTTTGC
Found at i:73332040 original size:26 final size:26
Alignment explanation
Indices: 73332008--73332078 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
73331998 CATATGCTGA
* *
73332008 TACTGGCAGCTTTGCTGTGATAC-TGT
1 TACTGGCAGCTTTGCTGCG-TACTTAT
* *
73332034 TACTGGCAGGTTTGCTGCGTTCTTAT
1 TACTGGCAGCTTTGCTGCGTACTTAT
*
73332060 TACTGGCATCTTTGCTGCG
1 TACTGGCAGCTTTGCTGCG
73332079 ACATTGGTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 2 0.05
26 36 0.95
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.39
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGTACTTAT
Found at i:73336717 original size:46 final size:45
Alignment explanation
Indices: 73336667--73336842 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
73336657 TGGTTGAGCA
73336667 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
73336713 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
73336760 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
73336806 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73336843 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:73336823 original size:93 final size:93
Alignment explanation
Indices: 73336664--73336834 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
73336654 GGATGGTTGA
* *
73336664 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73336729 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
73336757 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73336822 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73336835 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:73338487 original size:26 final size:26
Alignment explanation
Indices: 73338445--73338508 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
73338435 ATGGAGAAAG
* *
73338445 TATACT-ATACTGGTGGCTTTGCCACA
1 TATACTGATACT-ATGGCTTTACCACA
*
73338471 TATACTGTTACTATGGCTTTACCACA
1 TATACTGATACTATGGCTTTACCACA
73338497 TATACTGATACT
1 TATACTGATACT
73338509 GGTAGCTTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 29 0.88
27 4 0.12
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (26 bp):
TATACTGATACTATGGCTTTACCACA
Found at i:73342186 original size:27 final size:27
Alignment explanation
Indices: 73342133--73342186 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
73342123 ATGACCAAAA
* *
73342133 TACCCTTATAGGGTAAAATGACTATTT
1 TACCCTTAGAGGGTAAAATGACGATTT
*
73342160 TACCCTTCGAGGGT-AAATGACAGATTT
1 TACCCTTAGAGGGTAAAATGAC-GATTT
73342187 GTGCTTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (27 bp):
TACCCTTAGAGGGTAAAATGACGATTT
Found at i:73342284 original size:26 final size:27
Alignment explanation
Indices: 73342253--73342327 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 27
73342243 ATGGAGGAAG
*
73342253 TATACTA-TATTGGTGGCTTTGCCACA
1 TATACTATTACTGGTGGCTTTGCCACA
73342279 TATACTATTACTGGTGGCTTTGCCAC-
1 TATACTATTACTGGTGGCTTTGCCACA
* * **
73342305 GATACTGTTACTGGCAGCTTTGC
1 TATACTATTACTGGTGGCTTTGC
73342328 TGCGACATTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 26 0.60
27 17 0.40
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.37
Consensus pattern (27 bp):
TATACTATTACTGGTGGCTTTGCCACA
Found at i:73360324 original size:18 final size:17
Alignment explanation
Indices: 73360274--73360324 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 17
73360264 AACAAGTGGT
73360274 TCATTGAACATTTAATAC
1 TCATT-AACATTTAATAC
*
73360292 TCATTAGCATCTTAA-AC
1 TCATTAACAT-TTAATAC
73360309 ATACATTAACATTTAA
1 -T-CATTAACATTTAA
73360325 GCACATAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 6 0.21
18 14 0.50
19 8 0.29
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.37
Consensus pattern (17 bp):
TCATTAACATTTAATAC
Found at i:73361124 original size:113 final size:113
Alignment explanation
Indices: 73360926--73361159 Score: 387
Period size: 113 Copynumber: 2.1 Consensus size: 113
73360916 CTCCGATCCA
* * * *
73360926 CCTAAGCCTAGGGATTACCTGTATAGATAAAACAGAAGGGGTGAGTTTACGCAAACTCAGTGTGT
1 CCTAAGCCTAGGGATTACCTGTACAGATAAAACAGAAAGGGTGAGTTTACACAAACTCAGTATGT
* *
73360991 AATCGCCATGCAAACAAACAAATAACATACAGATAATCACAGTCTGGG
66 AATCCCCATGCAAACAAACAAATAACATACAGATAATCACAGTCTAGG
* *
73361039 CCTAAGCCTATGGATTACCTGTACAGATAAAACAGAAAGGGTGAGTTTACATAAACTCAGTATGT
1 CCTAAGCCTAGGGATTACCTGTACAGATAAAACAGAAAGGGTGAGTTTACACAAACTCAGTATGT
*
73361104 AATCCCCATGCAAACAAACAAATAGCATACAGATAATCACAGTCTAGG
66 AATCCCCATGCAAACAAACAAATAACATACAGATAATCACAGTCTAGG
73361152 CCTAAGCC
1 CCTAAGCC
73361160 CATTTTTAGT
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 112 1.00
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (113 bp):
CCTAAGCCTAGGGATTACCTGTACAGATAAAACAGAAAGGGTGAGTTTACACAAACTCAGTATGT
AATCCCCATGCAAACAAACAAATAACATACAGATAATCACAGTCTAGG
Found at i:73362361 original size:214 final size:214
Alignment explanation
Indices: 73361992--73362421 Score: 824
Period size: 214 Copynumber: 2.0 Consensus size: 214
73361982 CAACCAAAAT
73361992 CACTCCCTTAGTTCCTTGAAGGTGCACCAACCAACTCTTGGTCTCCACCTAAACAAGAGTCACAA
1 CACTCCCTTAGTTCCTTGAAGGTGCACCAACCAACTCTTGGTCTCCACCTAAACAAGAGTCACAA
* *
73362057 AACCTTTTCATTAAACTTTTAATCGAATTTCACTGCAAACTTTAATTACATCATACTTACTGATC
66 AACCTTTTCATTAAACTTTTAATCAAATTTCACTGCAAACTTTAATTAAATCATACTTACTGATC
73362122 AATCACAACCCTTCATTTAGTATTTTATAAAATGAGACAACAAAACACCTAAATCACTTACCCTA
131 AATCACAACCCTTCATTTAGTATTTTATAAAATGAGACAACAAAACACCTAAATCACTTACCCTA
73362187 CTGACGATAGAGCAGAGTG
196 CTGACGATAGAGCAGAGTG
73362206 CACTCCCTTAGTTCCTTGAAGGTGCACCAACCAACTCTTGGTCTCCACCTAAACAAGAGTCACAA
1 CACTCCCTTAGTTCCTTGAAGGTGCACCAACCAACTCTTGGTCTCCACCTAAACAAGAGTCACAA
*
73362271 AACCTTTTCGTTAAACTTTTAATCAAATTTCACTGCAAACTTTAATTAAATCATACTTACTGATC
66 AACCTTTTCATTAAACTTTTAATCAAATTTCACTGCAAACTTTAATTAAATCATACTTACTGATC
73362336 AATCACAACCCTTCATTTAGTATTTTATAAAATGAGACAACAAAACACCTAAATCACTTACCCTA
131 AATCACAACCCTTCATTTAGTATTTTATAAAATGAGACAACAAAACACCTAAATCACTTACCCTA
*
73362401 CTGGCGATAGAGCAGAGTG
196 CTGACGATAGAGCAGAGTG
73362420 CA
1 CA
73362422 ATTCGGCAAC
Statistics
Matches: 212, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
214 212 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (214 bp):
CACTCCCTTAGTTCCTTGAAGGTGCACCAACCAACTCTTGGTCTCCACCTAAACAAGAGTCACAA
AACCTTTTCATTAAACTTTTAATCAAATTTCACTGCAAACTTTAATTAAATCATACTTACTGATC
AATCACAACCCTTCATTTAGTATTTTATAAAATGAGACAACAAAACACCTAAATCACTTACCCTA
CTGACGATAGAGCAGAGTG
Found at i:73364525 original size:21 final size:21
Alignment explanation
Indices: 73364468--73364517 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
73364458 CTTAATTAAC
* *
73364468 TAACCAAACGATAAGATTTCT
1 TAACCAAACGGTAATATTTCT
73364489 TAACCAAACGGTAATATTTCT
1 TAACCAAACGGTAATATTTCT
73364510 TAACCAAA
1 TAACCAAA
73364518 TTTTAATACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (21 bp):
TAACCAAACGGTAATATTTCT
Found at i:73366858 original size:43 final size:44
Alignment explanation
Indices: 73366750--73366907 Score: 189
Period size: 43 Copynumber: 3.7 Consensus size: 44
73366740 CATAAGGTTC
* * * *
73366750 CGATATATGATTT-CATGTAAGGCCATGTCTGGGACGTTGACAT
1 CGATATTTGATTTACATGTAAGACCATGTCTAGGACATTGACAT
* *
73366793 CGAT-TTGAGATTTACATGTAAGACCATGTCTAGGACATTGCCAT
1 CGATATT-TGATTTACATGTAAGACCATGTCTAGGACATTGACAT
* * * *
73366837 C-ATATTTGATTTACTTGTAAGACCCTGTCTAGGACAGTGGCAT
1 CGATATTTGATTTACATGTAAGACCATGTCTAGGACATTGACAT
73366880 CGATATTTGA-TTACATGTAAGACCATGT
1 CGATATTTGATTTACATGTAAGACCATGT
73366908 TTGGGACGAT
Statistics
Matches: 98, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 1 0.01
43 60 0.61
44 37 0.38
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34
Consensus pattern (44 bp):
CGATATTTGATTTACATGTAAGACCATGTCTAGGACATTGACAT
Found at i:73370338 original size:19 final size:19
Alignment explanation
Indices: 73370314--73370353 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
73370304 CTACAATTTG
73370314 TAGAAGTACCTTTTTATAA
1 TAGAAGTACCTTTTTATAA
73370333 TAGAAGTACCTTTTTATAA
1 TAGAAGTACCTTTTTATAA
73370352 TA
1 TA
73370354 TACATACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (19 bp):
TAGAAGTACCTTTTTATAA
Found at i:73385683 original size:48 final size:48
Alignment explanation
Indices: 73385611--73385855 Score: 323
Period size: 48 Copynumber: 5.1 Consensus size: 48
73385601 TCATGACACC
* *
73385611 ATGATAAATGTAG-CTGTGTAAGACCATGTTTGGGACATGGCATCGGCG
1 ATGATAAATGT-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCG
* * *
73385659 ATGATAAATGTGCCTGTGTGAGACCATGTCTGGGACATGGCATCGGTG
1 ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCG
* *
73385707 ATGATATATGTGCCAATGTAAGACCATGTCTGGGACAT-GCATCGGCG
1 ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCG
* * **
73385754 ATGTTATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACG
1 ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCG
* * * * *
73385802 ATGATACATGTGTCACTGTAAGACCATGTCTGGGACATGGAATCGACG
1 ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCG
73385850 ATGATA
1 ATGATA
73385856 TGTGGTTTCA
Statistics
Matches: 177, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 45 0.25
48 132 0.75
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCG
Found at i:73385782 original size:95 final size:95
Alignment explanation
Indices: 73385627--73385855 Score: 323
Period size: 95 Copynumber: 2.4 Consensus size: 95
73385617 AATGTAGCTG
* * *
73385627 TGTAAGACCATGTTTGGGACATGGCATCGGCGATGATAAATGTGCCTGTGTGAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCGATGATAAATGTGCCAGTGTAAGACCATGTCTGG
*** *
73385692 GACATGGCATCGGTGATGATATATGTGCCAA
65 GACATGGCATCAACGATGATACATGTGCCAA
* *
73385723 TGTAAGACCATGTCTGGGACATGCATCGGCGATGTTATATGTGCCAGTGTAAGACCATGTCTGGG
1 TGTAAGACCATGTCTGGGACATGCATCGGCGATGATAAATGTGCCAGTGTAAGACCATGTCTGGG
* *
73385788 ACATGGCATCAACGATGATACATGTGTCAC
66 ACATGGCATCAACGATGATACATGTGCCAA
* *
73385818 TGTAAGACCATGTCTGGGACATGGAATCGACGATGATA
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCGATGATA
73385856 TGTGGTTTCA
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
95 85 0.72
96 33 0.28
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGCATCGGCGATGATAAATGTGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCAACGATGATACATGTGCCAA
Found at i:73385870 original size:48 final size:47
Alignment explanation
Indices: 73385627--73385888 Score: 303
Period size: 48 Copynumber: 5.5 Consensus size: 47
73385617 AATGTAGCTG
* * * *
73385627 TGTAAGACCATGTTTGGGACATGGCATCGGCGATGATAAATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGTC-A
* * *
73385675 TGTGAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGTC-A
* *
73385723 TGTAAGACCATGTCTGGGACAT-GCATCGGCGATGTTATATGTGCCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGTCA
** *
73385769 GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATACATGTGTCA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGTCA
* * * *
73385817 CTGTAAGACCATGTCTGGGACATGGAATCGACGATGATATGTGGTTTCA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATAT-GTGTCA
*
73385866 TGTAAGACTATGTC-GAGGACATG
1 TGTAAGACCATGTCTG-GGACATG
73385889 ACATTGGTAC
Statistics
Matches: 189, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
46 1 0.01
47 44 0.23
48 139 0.74
49 5 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGTCA
Found at i:73392056 original size:6 final size:6
Alignment explanation
Indices: 73392047--73392071 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
73392037 ATTCTCATTC
73392047 TTATTG TTATTG TTATTG TTATTG T
1 TTATTG TTATTG TTATTG TTATTG T
73392072 GGTTGAGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (6 bp):
TTATTG
Found at i:73395702 original size:49 final size:49
Alignment explanation
Indices: 73395624--73395753 Score: 208
Period size: 49 Copynumber: 2.7 Consensus size: 49
73395614 TCTATTATGA
* *
73395624 GGTCACGTGTGTAGT-CTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATT
*
73395672 GGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGCACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATT
**
73395721 GGTCGTATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
73395754 TGCATACTAG
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
48 14 0.19
49 61 0.81
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATT
Found at i:73399046 original size:14 final size:13
Alignment explanation
Indices: 73399026--73399057 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
73399016 AATATTTAAC
73399026 TTGTTCTTAATTA
1 TTGTTCTTAATTA
73399039 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
73399053 TTGTT
1 TTGTT
73399058 TTGATATCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:73409262 original size:30 final size:30
Alignment explanation
Indices: 73409217--73409276 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
73409207 ATTTAATATG
*
73409217 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* * *
73409247 AACTTTTGCATAATTACACTTTTGTCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
73409277 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:73421251 original size:22 final size:22
Alignment explanation
Indices: 73421223--73421344 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
73421213 TTCCACATCC
73421223 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
73421245 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
73421269 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
73421292 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
73421316 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
73421339 ATCACA
1 ATCACA
73421345 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:73421258 original size:47 final size:47
Alignment explanation
Indices: 73421195--73421540 Score: 500
Period size: 47 Copynumber: 7.3 Consensus size: 47
73421185 CCCTTCGGGA
* * *
73421195 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
73421242 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
73421289 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
73421336 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
73421383 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
73421430 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
73421477 CTTATCACGCATATATATACT-TTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
73421526 CCTATCACATATATA
1 CTTATCACATATATA
73421541 TACTTGTACA
Statistics
Matches: 281, Mismatches: 14, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 239 0.85
49 40 0.14
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:73424937 original size:40 final size:40
Alignment explanation
Indices: 73424880--73425239 Score: 553
Period size: 40 Copynumber: 9.1 Consensus size: 40
73424870 CGAATACACG
* * * *
73424880 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * ** * *
73424920 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
73424960 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73425000 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73425040 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73425080 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG-TACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73425119 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73425159 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
73425199 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
73425238 TC
1 TC
73425240 GTCGAGACCT
Statistics
Matches: 297, Mismatches: 22, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 43 0.14
40 254 0.86
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:73425170 original size:119 final size:120
Alignment explanation
Indices: 73424880--73425239 Score: 571
Period size: 119 Copynumber: 3.0 Consensus size: 120
73424870 CGAATACACG
* * * * * * *
73424880 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
* * * * *
73424945 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
73425000 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
*
73425065 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG-TACA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
73425119 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
73425184 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
73425238 TC
1 TC
73425240 GTCGAGACCT
Statistics
Matches: 221, Mismatches: 18, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
119 120 0.54
120 101 0.46
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:73425335 original size:38 final size:38
Alignment explanation
Indices: 73425293--73425367 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
73425283 GAATTTTAAT
*
73425293 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
73425331 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
73425368 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:73427857 original size:47 final size:47
Alignment explanation
Indices: 73427794--73428184 Score: 567
Period size: 47 Copynumber: 8.3 Consensus size: 47
73427784 CCCTTCGGGA
* * *
73427794 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
73427841 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
73427888 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
73427935 CTTATCAC--ATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
73427980 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
73428027 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
73428074 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
73428121 CTTATCACGCATATATATACT-TTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
73428170 CCTATCACATATATA
1 CTTATCACATATATA
73428185 TACTTGTACA
Statistics
Matches: 325, Mismatches: 13, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
45 43 0.13
46 1 0.00
47 240 0.74
49 40 0.12
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:73428065 original size:139 final size:139
Alignment explanation
Indices: 73427815--73428178 Score: 568
Period size: 139 Copynumber: 2.6 Consensus size: 139
73427805 TATACACTTC
* *
73427815 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATACA-TTTCACATTCATCACATTGGC
* * **
73427880 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT-CACA
65 CATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATACACA
73427944 TACACATGTT
130 TACACATGTT
*
73427954 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATACAT-TTCACATTCATCACATTGGC
73428019 CATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
65 CATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTAT-ACAC
73428084 ATACACATGTT
129 ATACACATGTT
* *
73428095 CACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCA--CACATATACA-TTTCACATTCATCACATTG
* *
73428160 GCCACTCGGCCCTATCACA
63 GCCATTCGGCCTTATCACA
73428179 TATATATACT
Statistics
Matches: 207, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
138 1 0.00
139 116 0.56
141 47 0.23
143 42 0.20
144 1 0.00
ACGTcount: A:0.27, C:0.32, G:0.11, T:0.31
Consensus pattern (139 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATTTCACATTCATCACATTGGCC
ATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATACACAT
ACACATGTT
Found at i:73434349 original size:13 final size:13
Alignment explanation
Indices: 73434331--73434365 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
73434321 CTGGGATATC
73434331 AAAACAAGAATTA
1 AAAACAAGAATTA
*
73434344 AAAACACATAATTA
1 AAAACA-AGAATTA
73434358 AAAACAAG
1 AAAACAAG
73434366 TTAAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.69, C:0.11, G:0.06, T:0.14
Consensus pattern (13 bp):
AAAACAAGAATTA
Found at i:73435214 original size:48 final size:48
Alignment explanation
Indices: 73435143--73435421 Score: 302
Period size: 48 Copynumber: 5.8 Consensus size: 48
73435133 GACACCGTGC
* * ** *
73435143 TAAATGTGCCTGTGTAAAACCATGTCTGGGACATCACATCAGCGATGA
1 TAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
*
73435191 TAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
1 TAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
* *
73435239 TATATGTGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCGATGA
1 TAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
* * *
73435287 TATATGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAATGA
1 TAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
* * * *
73435335 T--ATGTGGATTCA-TGTAAGACCATGTCTAGGACATGGAATTGGCGATGA
1 TAAATGT-G--CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
*
73435383 T--ATGTGGATTCA-TGTAAGACCATGTC-GAGGACATGGCAT
1 TAAATGT-G--CCAGTGTAAGACCATGTCTG-GGACATGGCAT
73435422 TGGTGCTTTA
Statistics
Matches: 211, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
46 4 0.02
47 1 0.00
48 204 0.97
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
Found at i:73437644 original size:6 final size:6
Alignment explanation
Indices: 73437633--73437658 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
73437623 GGTCTACTCC
73437633 AAAATG AAAATG AAAATG AAAATG AA
1 AAAATG AAAATG AAAATG AAAATG AA
73437659 GAGATGGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:73448771 original size:25 final size:25
Alignment explanation
Indices: 73448743--73448837 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
73448733 CTCTTTTAAT
* *
73448743 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
73448768 AACTGGGGCAAAGCCCTTCTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
73448793 AACTGAGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
73448818 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
73448838 AGCACTTCCT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:73449089 original size:54 final size:54
Alignment explanation
Indices: 73449043--73449229 Score: 232
Period size: 54 Copynumber: 3.5 Consensus size: 54
73449033 GGGTAAAATG
* *
73449043 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * *
73449097 G-AATTTCTACCCTACAAGGGTATTTCGATAATTCTTCCCTACAGGAGTATTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * * * *
73449151 GTAATTCTACCCTATAGGGGTATTTAGGTAATTCTACCCTACAGGGTTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * *
73449205 GTAATTCTACCCTATAGGGGTATTT
1 GTAATTTTACCCTACAAGGGTATTT
73449230 TGATACTTTA
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 5 0.04
54 108 0.92
55 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:73449170 original size:81 final size:81
Alignment explanation
Indices: 73449043--73449229 Score: 213
Period size: 81 Copynumber: 2.3 Consensus size: 81
73449033 GGGTAAAATG
* * * *
73449043 GTAATTTTACCCCACAAGG-GTATCTCGGTAATTCTACCCTACAGGGGTATTTCA-G-AATTTCT
1 GTAATTCTACCCTAC-AGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTT-AGGTAA-TTCT
73449105 ACCCTACAAGGG-TATTTCGA
63 ACCCTAC-AGGGTTATTT-GA
* *
73449125 -TAATTCTTCCCTACAGGAGTATTTCAGTAATTCTACCCTATAGGGGTATTTAGGTAATTCTACC
1 GTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTAGGTAATTCTACC
*
73449189 CTACAGGGTTATTTTA
66 CTACAGGGTTATTTGA
* *
73449205 GTAATTCTACCCTATAGGGGTATTT
1 GTAATTCTACCCTACAGGAGTATTT
73449230 TGATACTTTA
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
80 9 0.10
81 79 0.88
82 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTAGGTAATTCTACC
CTACAGGGTTATTTGA
Found at i:73449230 original size:27 final size:27
Alignment explanation
Indices: 73449043--73449230 Score: 193
Period size: 27 Copynumber: 7.0 Consensus size: 27
73449033 GGGTAAAATG
* * * * **
73449043 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
*
73449070 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
73449097 G-AATTTCTACCCTACAAGGGTA-TTTC
1 GTAA-TTCTACCCTACAGGGGTATTTTA
* * *
73449123 GATAATTCTTCCCTACAGGAGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTTA
*
73449151 GTAATTCTACCCTATAGGGGTA-TTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
*
73449177 GGTAATTCTACCCTACAGGGTTATTTTA
1 -GTAATTCTACCCTACAGGGGTATTTTA
*
73449205 GTAATTCTACCCTATAGGGGTATTTT
1 GTAATTCTACCCTACAGGGGTATTTT
73449231 GATACTTTAC
Statistics
Matches: 134, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
26 8 0.06
27 117 0.87
28 9 0.07
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:73449432 original size:27 final size:27
Alignment explanation
Indices: 73449222--73449427 Score: 216
Period size: 27 Copynumber: 7.7 Consensus size: 27
73449212 TACCCTATAG
* * * *
73449222 GGGTATTTTGAT-ACTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * *
73449248 GAGTATTTCGATAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
73449275 GCGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
73449302 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
73449329 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
73449356 GGGTATTTTGGTAATTTTACTAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
**
73449383 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
73449410 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
73449428 GTAAATCGAG
Statistics
Matches: 153, Mismatches: 26, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 10 0.07
27 143 0.93
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:73449441 original size:81 final size:81
Alignment explanation
Indices: 73449220--73449441 Score: 243
Period size: 81 Copynumber: 2.8 Consensus size: 81
73449210 TCTACCCTAT
* * * * * * * *
73449220 AGGGGTATTTTGAT-ACTTTACAAATCGAGAGTA-TTTCGATAATTTCACAAATCAAGCGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAATCAAGGGTATTT
73449283 TGGTAATTTTACAAGCC
65 TGGTAATTTTACAAGCC
* * *
73449300 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTT
* *
73449365 GGTAATTTTACTAATCG
66 GGTAATTTTAC-AAGCC
** ** *
73449382 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTA
73449442 AAACGATAAT
Statistics
Matches: 118, Mismatches: 21, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
80 13 0.11
81 97 0.82
82 8 0.07
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTT
GGTAATTTTACAAGCC
Found at i:73449452 original size:81 final size:80
Alignment explanation
Indices: 73449310--73449806 Score: 295
Period size: 81 Copynumber: 6.2 Consensus size: 80
73449300 AGGGGTATTT
* * ** * * *** *
73449310 TGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
1 TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
***
73449375 CTAATCGAGGGTATTT
66 -TAATCGAGGGTAAAA
* * * * *
73449391 TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTG
1 TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
*
73449456 TAAGTCGAAGGTAAAA
66 TAA-TCGAGGGTAAAA
* * * *** *
73449472 TGGTAATTCTATAAATCGAGGGTATTACGGTAATTTTGTAAATTAAGGGTAAAATGGTAATTCTA
1 TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
73449537 TAAATCGAGGGTAAAA
66 T-AATCGAGGGTAAAA
* *** * * ***
73449553 TGGTAATTTTATAAATCGAA-GGTAAAATGGTAATTTTATAAATCGAA-GGTAAAGCAGTAATTC
1 TGGTAATTTTATAAA-CCAAGGGTATTTTAGTAATTTTGTAAATC-AAGGGTAAAATGGTAATTC
*
73449616 TGTAAATCGAGGGTAAAA
64 TAT-AATCGAGGGTAAAA
* * * * *** * * *
73449634 CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAA-GGTAAAATGGTAATTCT
1 TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATC-AAGGGTAAAATGGTAATTCT
* *
73449698 GTAAATCAAGGGTAAAA
65 AT-AATCGAGGGTAAAA
** * *** *** * * * ** *
73449715 CAGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTC--
1 TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
*
73449778 -AATTGAGGGTAAAA
66 TAATCGAGGGTAAAA
*
73449792 TGGTAATTCTATAAA
1 TGGTAATTTTATAAA
73449807 TCGAAGGTAA
Statistics
Matches: 346, Mismatches: 64, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
77 25 0.07
80 5 0.01
81 311 0.90
82 5 0.01
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.33
Consensus pattern (80 bp):
TGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
TAATCGAGGGTAAAA
Found at i:73449476 original size:108 final size:108
Alignment explanation
Indices: 73449364--73449842 Score: 520
Period size: 108 Copynumber: 4.5 Consensus size: 108
73449354 AGGGGTATTT
** * *** * *
73449364 TGGTAATTTTACT-AATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 TGGTAATTTTA-TAAATCGAGGGTATTACGGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCT
* * * * *
73449428 GTAAATCGAGGGTAAAACGATAATTCTGTAAGTCGAAGGTAAAA
65 ATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAA
* *
73449472 TGGTAATTCTATAAATCGAGGGTATTACGGTAATTTTGTAAATTAAGGGTAAAATGGTAATTCTA
1 TGGTAATTTTATAAATCGAGGGTATTACGGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
*
73449537 TAAATCGAGGGTAAAATGGTAATTTTATAAATCGAAGGTAAAA
66 TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAA
* * * * * *
73449580 TGGTAATTTTATAAATCGAAGGTA-AAGCAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCT
1 TGGTAATTTTATAAATCGAGGGTATTA-CGGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCT
73449644 ATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAA
65 ATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAA
* * * ** * * * **
73449688 TGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTA
1 TGGTAATTTTATAAATCGAGGGTATTACGGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
* * * *
73449753 TAAATTGAGGGTAAAACGGTAATTC----AATTGAGGGTAAAA
66 TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAA
* * ** * *
73449792 TGGTAATTCTATAAATCGAAGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 TGGTAATTTTATAAATCGAGGGTATTACGGTAATTTTGTAAATCAAGGGTA
73449843 CTTTGGTAAT
Statistics
Matches: 326, Mismatches: 42, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
104 57 0.17
107 2 0.01
108 265 0.81
109 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (108 bp):
TGGTAATTTTATAAATCGAGGGTATTACGGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAA
Found at i:73449853 original size:27 final size:27
Alignment explanation
Indices: 73449420--73449842 Score: 503
Period size: 27 Copynumber: 15.8 Consensus size: 27
73449410 GGGTATTTTA
* * *
73449420 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
73449447 ATAATTCTGTAAGTCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
** *
73449474 GTAATTCTATAAATCGAGGGTATTACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * **
73449501 GTAATTTTGTAAATTAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
73449528 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
73449555 GTAATTTTATAAATCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * ***
73449582 GTAATTTTATAAATCGAAGGTAAAGCA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
73449609 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
73449636 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
73449663 GTAATTCTATAAATCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * **
73449690 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
73449717 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
73449744 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
73449771 GTAATTC----AATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
73449794 GTAATTCTATAAATCGAAGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
73449821 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
73449843 CTTTGGTAAT
Statistics
Matches: 339, Mismatches: 53, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
23 22 0.06
27 317 0.94
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:73456462 original size:22 final size:23
Alignment explanation
Indices: 73456437--73456480 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
73456427 TAAGATATTG
73456437 AATTTTAATTAATTTT-ATAATA
1 AATTTTAATTAATTTTGATAATA
*
73456459 AATTTTGATTAATTTTGATAAT
1 AATTTTAATTAATTTTGATAAT
73456481 TTCCCACAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
AATTTTAATTAATTTTGATAATA
Done.