Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 233 of 325
Found at i:73460158 original size:41 final size:42
Alignment explanation
Indices: 73460096--73460217 Score: 135
Period size: 41 Copynumber: 3.0 Consensus size: 42
73460086 AAAGCCATCG
* * *
73460096 GTGGATCCACGGTCGA-GAAGCAACCATGTGATCCTTAATTGA
1 GTGGATCCACGGTC-ATCAAGCAACCATGCGATCCTTAATTCA
*
73460138 -TGGATCCACGGTCATCAAGCAATCATGCGAT-CTTCAA-TCA
1 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTT-AATTCA
* * *
73460178 GTGGATCCACGGTCGTCAAGTAACCATGCGATCCTCAATT
1 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTTAATT
73460218 TCTTCCTCCA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
40 6 0.09
41 58 0.87
42 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (42 bp):
GTGGATCCACGGTCATCAAGCAACCATGCGATCCTTAATTCA
Found at i:73460505 original size:27 final size:27
Alignment explanation
Indices: 73460474--73460759 Score: 191
Period size: 27 Copynumber: 10.6 Consensus size: 27
73460464 TGGTAAATCC
* *
73460474 ACAAACCAAGGGTATTTCGGCAATTTT
1 ACAAATCAAGGGTATTTCGGTAATTTT
* * * **
73460501 GCAAACCAATGGTATTTCTATAATTTT
1 ACAAATCAAGGGTATTTCGGTAATTTT
** **
73460528 TGAAAGTCAAGGGTATTTCTATAATTTT
1 ACAAA-TCAAGGGTATTTCGGTAATTTT
** * **
73460556 GTAAATCAGGGGTATTTTTGTAATTTCT
1 ACAAATCAAGGGTATTTCGGTAATTT-T
*
73460584 -CAAATCAAGGGTATTTTGGTAA-TTT
1 ACAAATCAAGGGTATTTCGGTAATTTT
* ** *
73460609 CCAAATCTGGGGTATTTTGGTAATTTT
1 ACAAATCAAGGGTATTTCGGTAATTTT
* ** *
73460636 ATAAATTGAGGGTATTTTGGTAATTTT
1 ACAAATCAAGGGTATTTCGGTAATTTT
* * * *
73460663 ACAAGTCGAGGGTATTTCAGTAATTTC
1 ACAAATCAAGGGTATTTCGGTAATTTT
* * * *
73460690 ACAGATTAGGGGTATTTTGGTAATTTT
1 ACAAATCAAGGGTATTTCGGTAATTTT
* *
73460717 ACAAACCAAGGGTA-TTCAGTAATTTT
1 ACAAATCAAGGGTATTTCGGTAATTTT
** *
73460743 GTAAACCAAGGGTATTT
1 ACAAATCAAGGGTATTT
73460760 TAGTAATTCT
Statistics
Matches: 208, Mismatches: 46, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
25 1 0.00
26 44 0.21
27 139 0.67
28 24 0.12
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
ACAAATCAAGGGTATTTCGGTAATTTT
Found at i:73460780 original size:26 final size:27
Alignment explanation
Indices: 73460752--73460815 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
73460742 TGTAAACCAA
* *
73460752 GGGTATTTTAGTAATTCTATCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
73460779 GGGCATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
73460806 GGGTATTTCA
1 GGGTATTTCA
73460816 ACAATACTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:73460829 original size:27 final size:27
Alignment explanation
Indices: 73460772--73460829 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
73460762 GTAATTCTAT
** *
73460772 CCTACAGGGGCATTTCAGTAATTCTAC
1 CCTACAGGGGCATTTCAACAATACTAC
* *
73460799 CCTACAGGGGTATTTCAACAATACTAG
1 CCTACAGGGGCATTTCAACAATACTAC
73460826 CCTA
1 CCTA
73460830 TAGATATGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
CCTACAGGGGCATTTCAACAATACTAC
Found at i:73466982 original size:25 final size:25
Alignment explanation
Indices: 73466951--73467020 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
73466941 CAGGCCCATT
*
73466951 TTCACAGCTCGTGTGCGCATTCTGA
1 TTCACAGCTCGTGTGAGCATTCTGA
*
73466976 TTCACAGCTCATGTGAGCATTCTGA
1 TTCACAGCTCGTGTGAGCATTCTGA
*
73467001 TTCACAACTCGTGTGAGCAT
1 TTCACAGCTCGTGTGAGCAT
73467021 ACATGTACAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATTCTGA
Found at i:73467687 original size:20 final size:19
Alignment explanation
Indices: 73467664--73467705 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
73467654 TAAAGAAAGT
73467664 AAAT-CAAACAGAAAGTAATG
1 AAATGCAAACA-AAAGTAA-G
*
73467684 AAATGCAAATAAAAGTAAG
1 AAATGCAAACAAAAGTAAG
73467703 AAA
1 AAA
73467706 ATTTGACAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 11 0.55
21 5 0.25
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (19 bp):
AAATGCAAACAAAAGTAAG
Found at i:73476403 original size:23 final size:26
Alignment explanation
Indices: 73476360--73476416 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
73476350 TTCTCTATGC
*
73476360 GAATTCTCTATAAAGACTTTGT-AGT
1 GAATTCTCTATAAAGAATTTGTAAGT
73476385 GAATTCTCTA-AAA-AATTTGTAAAGT
1 GAATTCTCTATAAAGAATTTGT-AAGT
73476410 GAATTCT
1 GAATTCT
73476417 ATAATGACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 6 0.21
24 3 0.10
25 20 0.69
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.39
Consensus pattern (26 bp):
GAATTCTCTATAAAGAATTTGTAAGT
Found at i:73478751 original size:25 final size:25
Alignment explanation
Indices: 73478717--73478786 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
73478707 CTCTTTTAAT
*
73478717 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
73478742 AACTAGGGCAAAGCCCTTCTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
73478767 AACTGGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
73478787 ACCACTTCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:73479033 original size:27 final size:27
Alignment explanation
Indices: 73479009--73479232 Score: 331
Period size: 27 Copynumber: 8.3 Consensus size: 27
73478999 ACACACAAGA
* *
73479009 GTATCTCGGTAATTCTACCCTACAAGG
1 GTATTTCGGTAATTCTACCCTACAGGG
** * *
73479036 GTATTTTAGTATTTTTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
*
73479063 GTATTTCGATAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
*
73479090 GTATTTCAGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* * *
73479117 GTATTTCAGTATTTTTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
73479144 GTATTTCGGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* *
73479171 GTAATTCGGTAATTCTACCCTATAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
73479198 GTATTTCGGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
73479225 GTATTTCG
1 GTATTTCG
73479233 ATATTTTACA
Statistics
Matches: 175, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 175 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GTATTTCGGTAATTCTACCCTACAGGG
Found at i:73479295 original size:27 final size:27
Alignment explanation
Indices: 73479258--73479399 Score: 158
Period size: 27 Copynumber: 5.3 Consensus size: 27
73479248 AGAGTTTCAA
* *
73479258 TAATTTCACAAATCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* *
73479285 TAATTTTACAAGCTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* * ** *
73479312 TAATTTTACGAACTAGACGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
73479339 TAATTTTACAAACCAGGGCTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
** * *
73479366 TAATTTTGTAAACCAAGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGG
73479393 TAATTTT
1 TAATTTT
73479400 GTAAATCGGG
Statistics
Matches: 95, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTGG
Found at i:73479449 original size:81 final size:81
Alignment explanation
Indices: 73479364--73479573 Score: 249
Period size: 81 Copynumber: 2.6 Consensus size: 81
73479354 GGGCTATTTT
* * * * * * * *
73479364 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGGGGGTAAAATGGAAATTCTAT
1 GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTAAAATGGAAACTCTAT
*
73479429 AAATCGATGGTAAAAC
66 AAATCGAGGGTAAAAC
* ** * * * *
73479445 GGTAATTCTATAAATCGAGGGTAAAATGGTAACTCTATAAATCGAGGGTAAAATGGTAACTCTGT
1 GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTAAAATGGAAACTCTAT
73479510 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * *
73479526 GGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGG
1 GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGG
73479574 CATTTTAGTA
Statistics
Matches: 105, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (81 bp):
GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTAAAATGGAAACTCTAT
AAATCGAGGGTAAAAC
Found at i:73479559 original size:27 final size:27
Alignment explanation
Indices: 73479392--73479548 Score: 215
Period size: 27 Copynumber: 5.8 Consensus size: 27
73479382 GGGTATTTTA
* *
73479392 GTAATTTTGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * * *
73479419 GAAATTCTATAAATCGATGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
73479446 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
73479473 GTAACTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
73479500 GTAACTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
73479527 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
73479549 CTTTGGTAAT
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:73479567 original size:27 final size:27
Alignment explanation
Indices: 73479274--73479587 Score: 139
Period size: 27 Copynumber: 11.6 Consensus size: 27
73479264 CACAAATCAG
* * *
73479274 GGGTATTTTGGTAATTTTA-CAAGCTA
1 GGGTATTTTGGTAATTTTATAAATCGA
** *
73479300 GGGGTATTTTGGTAATTTTACGAA-CTA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* * * *
73479327 GACGTATTTTAGTAATTTTACAAA-CCA
1 G-GGTATTTTGGTAATTTTATAAATCGA
* * *
73479354 GGGCTATTTTGGTAATTTTGTAAACCAA
1 GGG-TATTTTGGTAATTTTATAAATCGA
* * *
73479382 GGGTATTTTAGTAATTTTGTAAATCGG
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
73479409 GGGTAAAATGGAAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* **** *
73479436 TGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
73479463 GGGTAAAATGGTAACTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * * *
73479490 GGGTAAAATGGTAACTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** * *
73479517 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
73479544 GGGTACTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
73479571 GGGCATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
73479588 GGTAAACTAA
Statistics
Matches: 241, Mismatches: 42, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.01
27 232 0.96
28 7 0.03
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:73481950 original size:25 final size:25
Alignment explanation
Indices: 73481918--73481987 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
73481908 CTCTTTTAAT
*
73481918 AACTGGGGCAATGCCCTTTTTGATA
1 AACTGGGGCAATGCCCTTTTCGATA
* ** *
73481943 AACTGGGGAAAAACCCTTTTCGGTA
1 AACTGGGGCAATGCCCTTTTCGATA
73481968 AACTGGGGC-ATAGCCCTTTT
1 AACTGGGGCAAT-GCCCTTTT
73481988 ACCACTTCCT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAATGCCCTTTTCGATA
Found at i:73482218 original size:27 final size:27
Alignment explanation
Indices: 73482188--73482350 Score: 254
Period size: 27 Copynumber: 6.0 Consensus size: 27
73482178 GGGGCAAAAT
* * * *
73482188 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73482215 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73482242 GGTATTTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73482269 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73482296 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73482323 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73482350 G
1 G
73482351 ATATTTTACA
Statistics
Matches: 124, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:73482399 original size:27 final size:27
Alignment explanation
Indices: 73482284--73482519 Score: 153
Period size: 27 Copynumber: 8.8 Consensus size: 27
73482274 TTCTACCCTA
* * **
73482284 CAGGGGTATTTCGGTAATTCTACCCTA-
1 CAGGGGTATTTCGATAATTTTA-CAAAC
* * **
73482311 CAGGGGTATTTCGGTAATTCTACCCTA-
1 CAGGGGTATTTCGATAATTTTA-CAAAC
*
73482338 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGGGTATTTCGATAATTTTACAAAC
* * *
73482364 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTCGATAATTTTACAAAC
* * *
73482391 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTCGATAATTTTACAAAC
* *
73482418 CAGGAGTATTTTGGA-AATTTTACAAAC
1 CAGGGGTA-TTTCGATAATTTTACAAAC
* *
73482445 CAGTGGTATTT-TAGTAATTTTACAAAC
1 CAGGGGTATTTCGA-TAATTTTACAAAC
* * **
73482472 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTCGATAATTTTACAAAC
*
73482499 CAAGGGTATTTC-AGTAATTTT
1 CAGGGGTATTTCGA-TAATTTT
73482520 GTAAATCGAG
Statistics
Matches: 173, Mismatches: 27, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
25 4 0.02
26 20 0.12
27 144 0.83
28 5 0.03
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (27 bp):
CAGGGGTATTTCGATAATTTTACAAAC
Found at i:73482437 original size:54 final size:54
Alignment explanation
Indices: 73482353--73482519 Score: 176
Period size: 54 Copynumber: 3.1 Consensus size: 54
73482343 GTATTTCGAT
* * * *
73482353 ATTTTACAAATC-GAGAGTA-TTTCGATAATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAG-GAGTATTTTGGA-AATTTCACAAACCAGGGGTATTTTAGTA
* * *
73482407 ATTTTACAAGCCAGGAGTATTTTGGAAATTTTACAAACCAGTGGTATTTTAGTA
1 ATTTTACAAACCAGGAGTATTTTGGAAATTTCACAAACCAGGGGTATTTTAGTA
* * *** * *
73482461 ATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTA
1 ATTTTACAAACCAGGAGTATTTTGGAAATTTCACAAACCAGGGGTATTTTAGTA
73482515 ATTTT
1 ATTTT
73482520 GTAAATCGAG
Statistics
Matches: 96, Mismatches: 15, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
54 90 0.94
55 6 0.06
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (54 bp):
ATTTTACAAACCAGGAGTATTTTGGAAATTTCACAAACCAGGGGTATTTTAGTA
Found at i:73482549 original size:27 final size:27
Alignment explanation
Indices: 73482519--73482587 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
73482509 TCAGTAATTT
*
73482519 TGTAAATCGAGGGTAAAATGGAAACTC
1 TGTAAATCGAGGGTAAAACGGAAACTC
* * * *
73482546 TGTAAATCAAGGTTAAAACGGTAATTC
1 TGTAAATCGAGGGTAAAACGGAAACTC
*
73482573 TATAAATCGAGGGTA
1 TGTAAATCGAGGGTA
73482588 CTTTGGTAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (27 bp):
TGTAAATCGAGGGTAAAACGGAAACTC
Found at i:73484969 original size:24 final size:24
Alignment explanation
Indices: 73484942--73485025 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
73484932 TTGGAGGCCT
73484942 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
73484966 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
* ** *
73484991 AACCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
73485016 AGCCCTTTTA
1 AGCCCTTTTA
73485026 CCACTTCCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 36 0.71
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:73484989 original size:25 final size:25
Alignment explanation
Indices: 73484955--73485024 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
73484945 CTCTTTTAAT
*
73484955 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
73484980 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
73485005 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
73485025 ACCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:73485258 original size:27 final size:27
Alignment explanation
Indices: 73485228--73485360 Score: 214
Period size: 27 Copynumber: 5.0 Consensus size: 27
73485218 GGCCAAATGA
* * * *
73485228 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
73485255 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
73485282 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
73485309 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
73485336 TAATTCTACCCTACA-GGGTATTTCG
1 TAATTCTACCCTACAGGGGTATTTCG
73485361 ATATTTTACA
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
26 10 0.10
27 91 0.90
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:73485409 original size:27 final size:27
Alignment explanation
Indices: 73485325--73485425 Score: 91
Period size: 27 Copynumber: 3.8 Consensus size: 27
73485315 TACCCTACAG
* ** *
73485325 GGGTATTTCGATAATTCTAC-CCTACA
1 GGGTATTTCGATAATTTTACAAATAGA
*
73485351 GGGTATTTCGAT-ATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATAGA
* *
73485377 GAGTATTTCGATAATTTCACAAATTAG-
1 GGGTATTTCGATAATTTTACAAA-TAGA
* *
73485404 GGGTATTTTGGTAATTTTACAA
1 GGGTATTTCGATAATTTTACAA
73485426 GCCAGGAGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
25 6 0.10
26 25 0.42
27 27 0.45
28 2 0.03
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATAGA
Found at i:73485435 original size:54 final size:54
Alignment explanation
Indices: 73485363--73485529 Score: 183
Period size: 54 Copynumber: 3.1 Consensus size: 54
73485353 GTATTTCGAT
* * * ** *
73485363 ATTTTACAAATC-GAGAGTATTTCGATAATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAACCAG-GAGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
* * *
73485417 ATTTTACAAGCCAGGAGTATTTTGGTAATTTTACAAACCAGTGGTATTTTAGTA
1 ATTTTACAAACCAGGAGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
* *** * *
73485471 ATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTA
1 ATTTTACAAACCAGGAGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
73485525 ATTTT
1 ATTTT
73485530 GTAAATCGAG
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 95 0.99
55 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
ATTTTACAAACCAGGAGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
Found at i:73485436 original size:27 final size:26
Alignment explanation
Indices: 73485349--73485529 Score: 166
Period size: 27 Copynumber: 6.8 Consensus size: 26
73485339 TTCTACCCTA
* *
73485349 CAGGGTATTTCGAT-ATTTTACAAATC
1 CAGGGTATTTTGGTAATTTTACAAA-C
* * * * * *
73485375 GAGAGTATTTCGATAATTTCACAAAT
1 CAGGGTATTTTGGTAATTTTACAAAC
* *
73485401 TAGGGGTATTTTGGTAATTTTACAAGC
1 CA-GGGTATTTTGGTAATTTTACAAAC
73485428 CAGGAGTATTTTGGTAATTTTACAAAC
1 CAGG-GTATTTTGGTAATTTTACAAAC
*
73485455 CAGTGGTATTTTAGTAATTTTACAAAC
1 CAG-GGTATTTTGGTAATTTTACAAAC
**
73485482 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CA-GGGTATTTTGGTAATTTTACAAAC
**
73485509 CAAGGGTATTTCAGTAATTTT
1 C-AGGGTATTTTGGTAATTTT
73485530 GTAAATCGAG
Statistics
Matches: 130, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
26 15 0.12
27 112 0.86
28 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
CAGGGTATTTTGGTAATTTTACAAAC
Found at i:73485689 original size:27 final size:27
Alignment explanation
Indices: 73485522--73485678 Score: 224
Period size: 27 Copynumber: 5.8 Consensus size: 27
73485512 GGGTATTTCA
*
73485522 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
73485549 GTAATTCTGTAAATCGAGGGAAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
73485576 ATTATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
73485603 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
73485630 GTAACTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
73485657 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
73485679 CTTTGGTAAT
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:73485689 original size:81 final size:81
Alignment explanation
Indices: 73485522--73485678 Score: 260
Period size: 81 Copynumber: 1.9 Consensus size: 81
73485512 GGGTATTTCA
* * * *
73485522 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGAAAAACGATTATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAGGGAAAAACGATAATTCTATA
73485587 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
73485603 GTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAGGGAAAAACGATAATTCTATA
73485668 AATCGAGGGTA
66 AATCGAGGGTA
73485679 CTTTGGTAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.29
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAGGGAAAAACGATAATTCTATA
AATCGAGGGTAAAATG
Found at i:73485697 original size:27 final size:27
Alignment explanation
Indices: 73485404--73485697 Score: 146
Period size: 27 Copynumber: 10.9 Consensus size: 27
73485394 CACAAATTAG
* * * *
73485404 GGGTATTTTGGTAATTTTA-CAAGCCA
1 GGGTAATTTGGTAATTTTATAAATCGA
* * *
73485430 GGAGTATTTTGGTAATTTTACAAA-CCA
1 GG-GTAATTTGGTAATTTTATAAATCGA
* * * *
73485457 GTGGTATTTTAGTAATTTTACAAA-CCA
1 G-GGTAATTTGGTAATTTTATAAATCGA
* * * *
73485484 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTAATTTGGTAATTTTATAAATCGA
* *
73485512 GGGT-ATTTCAGTAATTTTGTAAATCGA
1 GGGTAATTT-GGTAATTTTATAAATCGA
** * *
73485539 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
* *** * * *
73485566 GGGAAAAACGATTATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** *
73485593 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** * * *
73485620 GGGTAAAATGGTAACTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
*** *
73485647 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
* *
73485674 GGGTACTTTGGTAATTTTACAAAT
1 GGGTAATTTGGTAATTTTATAAAT
73485698 TAAGGGCATT
Statistics
Matches: 227, Mismatches: 34, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.02
27 214 0.94
28 8 0.04
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.34
Consensus pattern (27 bp):
GGGTAATTTGGTAATTTTATAAATCGA
Found at i:73488054 original size:24 final size:24
Alignment explanation
Indices: 73488027--73488110 Score: 98
Period size: 24 Copynumber: 3.4 Consensus size: 24
73488017 ATTGGAGCCT
73488027 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
73488051 AGCCCTTTTTGAATAAACTGGGGCAA
1 AGCCC-TTTT-AATAAACTGGGGCAA
* ** *
73488077 AACCCTTTTCGTAAACTGGGGCAT
1 AGCCCTTTTAATAAACTGGGGCAA
73488101 AGCCCTTTTA
1 AGCCCTTTTA
73488111 CCACTTCCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 28 0.55
25 7 0.14
26 15 0.29
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:73488341 original size:27 final size:27
Alignment explanation
Indices: 73488311--73488428 Score: 132
Period size: 27 Copynumber: 4.4 Consensus size: 27
73488301 GGGGCAAAAT
* *
73488311 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
73488338 GGTAATTCTACCCTAC-AGTGGTATTTT
1 GGTAATTTTACCCTACAAG-GGTATTTC
*
73488365 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
73488392 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
73488419 GAT-ATTTTAC
1 GGTAATTTTAC
73488429 AAATCGAGAG
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
26 8 0.11
27 65 0.87
28 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:73488368 original size:54 final size:54
Alignment explanation
Indices: 73488310--73488417 Score: 171
Period size: 54 Copynumber: 2.0 Consensus size: 54
73488300 AGGGGCAAAA
* *
73488310 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGTGGTATTT
1 TGGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTT
* * *
73488364 TGGTATTTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTT
73488418 CGATATTTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
TGGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:73488459 original size:27 final size:27
Alignment explanation
Indices: 73488407--73488557 Score: 104
Period size: 27 Copynumber: 5.8 Consensus size: 27
73488397 TTCTACCCTA
* *
73488407 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGAGTATTTTGATAATTTTACAAAT
*
73488433 C-GAGAGTATTTTGATAATTTCACAAAT
1 CAG-GAGTATTTTGATAATTTTACAAAT
* * **
73488460 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGAGTATTTTGATAATTTTACAAAT
* *
73488487 CAGGA-TATATTTGGTAATTTTACAAAC
1 CAGGAGTAT-TTTGATAATTTTACAAAT
*
73488514 CAGTG-GT-TTTT-AGTAATTTT--AAAC
1 CAG-GAGTATTTTGA-TAATTTTACAAAT
*
73488538 CAGGGGTATTTTG-TAATTTT
1 CAGGAGTATTTTGATAATTTT
73488558 GTACACCAAG
Statistics
Matches: 104, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
23 1 0.01
24 16 0.15
25 5 0.05
26 24 0.23
27 55 0.53
28 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
CAGGAGTATTTTGATAATTTTACAAAT
Found at i:73488505 original size:54 final size:51
Alignment explanation
Indices: 73488442--73488541 Score: 128
Period size: 54 Copynumber: 1.9 Consensus size: 51
73488432 TCGAGAGTAT
* *
73488442 TTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAGGATATA
1 TTTGATAATTTCACAAACCAGGGGT-TTTTAGTAATTTTA-AA-CCAGGATATA
* * *
73488496 TTTGGTAATTTTACAAACCAGTGGTTTTTAGTAATTTTAAACCAGG
1 TTTGATAATTTCACAAACCAGGGGTTTTTAGTAATTTTAAACCAGG
73488542 GGTATTTTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 5 0.12
52 2 0.05
53 13 0.32
54 21 0.51
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (51 bp):
TTTGATAATTTCACAAACCAGGGGTTTTTAGTAATTTTAAACCAGGATATA
Found at i:73488565 original size:26 final size:26
Alignment explanation
Indices: 73488460--73488589 Score: 99
Period size: 26 Copynumber: 5.0 Consensus size: 26
73488450 TTTCACAAAT
73488460 CAGGGGTATTTTGGTAA-TTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTTA-AA-C
* *
73488487 CA-GGATATATTTGGTAATTTTACAAAC
1 CAGGGGTAT-TTTGGTAATTTT-TAAAC
* *
73488514 CAGTGGT-TTTTAGTAA-TTTTAAAC
1 CAGGGGTATTTTGGTAATTTTTAAAC
*
73488538 CAGGGGTATTTT-GTAATTTTGTACAC
1 CAGGGGTATTTTGGTAATTTT-TAAAC
* **
73488564 CAAGGGTATTTCAGTAATTTTGTAAA
1 CAGGGGTATTTTGGTAATTTT-TAAA
73488590 TCGAGGGTAA
Statistics
Matches: 84, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
24 14 0.17
25 10 0.12
26 26 0.31
27 26 0.31
28 7 0.08
29 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTTAAAC
Found at i:73488743 original size:27 final size:27
Alignment explanation
Indices: 73488577--73488732 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
73488567 GGGTATTTCA
* *
73488577 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
73488604 GTAATTCTGTAAATCGAGAGAAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
73488631 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
73488658 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
73488685 GTAACTCTGT-AATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
73488711 GTAATTCTATAAATTGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
73488733 CTTTGGTAAT
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.21
27 89 0.79
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:73490727 original size:22 final size:23
Alignment explanation
Indices: 73490701--73490751 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
73490691 AAATGATATC
* *
73490701 AAAATAGGGA-GAAAACAACAAG
1 AAAATAGGCATGAAAACAAAAAG
*
73490723 AAAATA-GCATTAAAACAAAAAG
1 AAAATAGGCATGAAAACAAAAAG
73490745 AAAATAG
1 AAAATAG
73490752 CATATTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.67, C:0.08, G:0.16, T:0.10
Consensus pattern (23 bp):
AAAATAGGCATGAAAACAAAAAG
Found at i:73490752 original size:22 final size:22
Alignment explanation
Indices: 73490712--73490754 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
73490702 AAATAGGGAG
*
73490712 AAAACAACAAGAAAATAGCATT
1 AAAACAAAAAGAAAATAGCATT
73490734 AAAACAAAAAGAAAATAGCAT
1 AAAACAAAAAGAAAATAGCAT
73490755 ATTTTTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.67, C:0.12, G:0.09, T:0.12
Consensus pattern (22 bp):
AAAACAAAAAGAAAATAGCATT
Found at i:73506603 original size:29 final size:29
Alignment explanation
Indices: 73506541--73506607 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
73506531 AATCAACCAT
73506541 GCACACTTAGTGCCATGCACTTTAAACTC
1 GCACACTTAGTGCCATGCACTTTAAACTC
* **
73506570 ACACACTTAGTGCCATGCA-TTTCAAGTTC
1 GCACACTTAGTGCCATGCACTTT-AAACTC
73506599 GCACACTTA
1 GCACACTTA
73506608 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCACTTTAAACTC
Found at i:73506748 original size:29 final size:30
Alignment explanation
Indices: 73506709--73506787 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
73506699 CTTAATAATC
73506709 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
73506739 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
73506768 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73506788 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:73519804 original size:22 final size:20
Alignment explanation
Indices: 73519755--73519810 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
73519745 AAAACTATAT
73519755 AAATATATTATTTAATTATAAA
1 AAATATA-TA-TTAATTATAAA
**
73519777 GTATATGATATTAATTTATAAA
1 AAATAT-ATATTAA-TTATAAA
73519799 AAATATATATTA
1 AAATATATATTA
73519811 TAACATTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
21 10 0.36
22 17 0.61
23 1 0.04
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
AAATATATATTAATTATAAA
Found at i:73520405 original size:17 final size:17
Alignment explanation
Indices: 73520383--73520415 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73520373 AAGTATGATT
73520383 ATATGTGATT-ATTTGAA
1 ATATGT-ATTGATTTGAA
73520400 ATATGTATTGATTTGA
1 ATATGTATTGATTTGA
73520416 TGTTGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (17 bp):
ATATGTATTGATTTGAA
Found at i:73524442 original size:26 final size:25
Alignment explanation
Indices: 73524407--73524461 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
73524397 ACTATATAAA
* *
73524407 TATATTATTTAGTTATAAAT-TATAT
1 TATATTATTTA-TAAAAAATATATAT
73524432 TATATTAATTTATAAAAAATATATAT
1 TATATT-ATTTATAAAAAATATATAT
73524458 TATA
1 TATA
73524462 ACATTATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
TATATTATTTATAAAAAATATATAT
Found at i:73524453 original size:22 final size:21
Alignment explanation
Indices: 73524404--73524459 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
73524394 AAAACTATAT
* *
73524404 AAATATATTATTTAGTTATAAA
1 AAATATA-TATTAATTTATAAA
**
73524426 TTATATTATATTAATTTATAAA
1 AAATA-TATATTAATTTATAAA
73524448 AAATATATATTA
1 AAATATATATTA
73524460 TAACATTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
21 7 0.26
22 18 0.67
23 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
AAATATATATTAATTTATAAA
Found at i:73525059 original size:17 final size:17
Alignment explanation
Indices: 73525037--73525069 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73525027 AAGTATGATT
73525037 ATATGTGATT-ATTTGAA
1 ATATGT-ATTGATTTGAA
73525054 ATATGTATTGATTTGA
1 ATATGTATTGATTTGA
73525070 TGTTGAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (17 bp):
ATATGTATTGATTTGAA
Found at i:73528952 original size:451 final size:451
Alignment explanation
Indices: 73528110--73529013 Score: 1745
Period size: 451 Copynumber: 2.0 Consensus size: 451
73528100 TGAACATGGC
* *
73528110 CTGCAGCACGGGCATATCTTAGGGTCACACAGGCATGTCCCTAGACCACATAGGCATGTGAGCCC
1 CTGCAGCACGGGCATATCTTAAGGTCACACAGGCATGTCCCTAGACCACACAGGCATGTGAGCCC
73528175 TATACCTAGGAAAAATTTTAGAAATTTTGCGAAAAATTCTTCGAGTTCTTAATTAAGTCCCGACT
66 TATACCTAGGAAAAATTTTAGAAATTTTGCGAAAAATTCTTCGAGTTCTTAATTAAGTCCCGACT
73528240 TGATTCTAATACTCGTTTTGGGCTTCAAGGGTCCATTTAAGGGACGTTGTGAATATTTCGATAAA
131 TGATTCTAATACTCGTTTTGGGCTTCAAGGGTCCATTTAAGGGACGTTGTGAATATTTCGATAAA
73528305 TGAATAGTAATTAACGTGAATTATTTGTAAATATTCTAAAAGTTTTGGTAATGCTCTGTAATCGT
196 TGAATAGTAATTAACGTGAATTATTTGTAAATATTCTAAAAGTTTTGGTAATGCTCTGTAATCGT
73528370 GTTCTAGCGACAGATACAGGTTAAAGGTGTTACAGGTGGTACGTTTTTACCTTTCACTCGGTTGT
261 GTTCTAGCGACAGATACAGGTTAAAGGTGTTACAGGTGGTACGTTTTTACCTTTCACTCGGTTGT
73528435 TCAAACAACCCCATATGAAGCCATCTATGGTCAGGCCCCTCTCAGCACTTACCTTACTTAGCAGG
326 TCAAACAACCCCATATGAAGCCATCTATGGTCAGGCCCCTCTCAGCACTTACCTTACTTAGCAGG
73528500 ATTCTCAACTATTGATTGTGTGAATTGTAGCTTGCAACAACGAGAAGCAACTAGATACCTT
391 ATTCTCAACTATTGATTGTGTGAATTGTAGCTTGCAACAACGAGAAGCAACTAGATACCTT
* *
73528561 CTGCAGCGCGGGCATATCTTAAGGTCACACAGGCATGTCCCTAGACTACACAGGCATGTGAGCCC
1 CTGCAGCACGGGCATATCTTAAGGTCACACAGGCATGTCCCTAGACCACACAGGCATGTGAGCCC
*
73528626 TGTACCTAGGAAAAATTTTAGAAATTTTGCGAAAAATTCTTCGAGTTCTTAATTAAGTCCCGACT
66 TATACCTAGGAAAAATTTTAGAAATTTTGCGAAAAATTCTTCGAGTTCTTAATTAAGTCCCGACT
*
73528691 TGATTCTAATACTCGTTTTGGGCTTCAAGGTTCCATTTAAGGGACGTTGTGAATATTTCGATAAA
131 TGATTCTAATACTCGTTTTGGGCTTCAAGGGTCCATTTAAGGGACGTTGTGAATATTTCGATAAA
73528756 TGAATAGTAATTAACGTGAATTATTTGTAAATATTCTAAAAGTTTTGGTAATGCTCTGTAATCGT
196 TGAATAGTAATTAACGTGAATTATTTGTAAATATTCTAAAAGTTTTGGTAATGCTCTGTAATCGT
*
73528821 GTTCTAGTGACAGATACAGGTTAAAGGTGTTACAGGTGGTACGTTTTTACCTTTCACTCGGTTGT
261 GTTCTAGCGACAGATACAGGTTAAAGGTGTTACAGGTGGTACGTTTTTACCTTTCACTCGGTTGT
73528886 TCAAACAACCCCATATGAAGCCATCTATGGTCAGGCCCCTCTCAGCACTTACCTTACTTAGCAGG
326 TCAAACAACCCCATATGAAGCCATCTATGGTCAGGCCCCTCTCAGCACTTACCTTACTTAGCAGG
73528951 ATTCTCAACTATTGATTGTGTGAATTGTAGCTTGCAACAACGAGAAGCAACTAGATACCTT
391 ATTCTCAACTATTGATTGTGTGAATTGTAGCTTGCAACAACGAGAAGCAACTAGATACCTT
73529012 CT
1 CT
73529014 TCAGTTTCGT
Statistics
Matches: 446, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
451 446 1.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (451 bp):
CTGCAGCACGGGCATATCTTAAGGTCACACAGGCATGTCCCTAGACCACACAGGCATGTGAGCCC
TATACCTAGGAAAAATTTTAGAAATTTTGCGAAAAATTCTTCGAGTTCTTAATTAAGTCCCGACT
TGATTCTAATACTCGTTTTGGGCTTCAAGGGTCCATTTAAGGGACGTTGTGAATATTTCGATAAA
TGAATAGTAATTAACGTGAATTATTTGTAAATATTCTAAAAGTTTTGGTAATGCTCTGTAATCGT
GTTCTAGCGACAGATACAGGTTAAAGGTGTTACAGGTGGTACGTTTTTACCTTTCACTCGGTTGT
TCAAACAACCCCATATGAAGCCATCTATGGTCAGGCCCCTCTCAGCACTTACCTTACTTAGCAGG
ATTCTCAACTATTGATTGTGTGAATTGTAGCTTGCAACAACGAGAAGCAACTAGATACCTT
Found at i:73536118 original size:15 final size:15
Alignment explanation
Indices: 73536013--73536120 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
73536003 CCAATATCTC
73536013 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
73536028 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
*
73536043 GATACCCGTATCTTT
1 GATACCCATATCTTT
** *
73536058 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
73536073 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
73536088 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
73536103 GATACCCATATCTTT
1 GATACCCATATCTTT
73536118 GAT
1 GAT
73536121 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.25, C:0.23, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:73536127 original size:30 final size:30
Alignment explanation
Indices: 73536003--73536126 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
73535993 TTTTATTATG
*
73536003 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
73536034 CCAATATTTGATACCCGTATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
73536064 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
73536094 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
73536124 CCA
1 CCA
73536127 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.25, C:0.25, G:0.07, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:73540777 original size:15 final size:15
Alignment explanation
Indices: 73540703--73540810 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
73540693 CCAATATCTC
*
73540703 GATACCCATATCTTT
1 GATACCCATATATTT
**
73540718 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
* *
73540733 GATACCCGTATCTTT
1 GATACCCATATATTT
* **
73540748 TACTTTCCA-ATATTT
1 GA-TACCCATATATTT
73540763 GATACCCATATATTT
1 GATACCCATATATTT
**
73540778 GACTTTCCAT-TATTT
1 GA-TACCCATATATTT
*
73540793 GATACCCATATCTTT
1 GATACCCATATATTT
73540808 GAT
1 GAT
73540811 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:73540817 original size:30 final size:30
Alignment explanation
Indices: 73540693--73540816 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
73540683 TTTTATTATG
*
73540693 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
* *
73540724 CCAATATTTGATACCCGTATCTTTTACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
73540754 CCAATATTTGATACCCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
73540784 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
73540814 CCA
1 CCA
73540817 TAAATATGGA
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
30 77 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:73541858 original size:20 final size:20
Alignment explanation
Indices: 73541832--73541889 Score: 91
Period size: 21 Copynumber: 2.9 Consensus size: 20
73541822 GTTTTGAGTC
73541832 TTTTTTTATATATTTTTTAAG
1 TTTTTTTATATATTTTTT-AG
*
73541853 TTTTTTTATATATTCTTTAG
1 TTTTTTTATATATTTTTTAG
73541873 TTTTTTTATA-ATTTTTT
1 TTTTTTTATATATTTTTT
73541890 GAGATGTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.17
20 12 0.34
21 17 0.49
ACGTcount: A:0.21, C:0.02, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTTTTATATATTTTTTAG
Found at i:73541858 original size:23 final size:21
Alignment explanation
Indices: 73541823--73541889 Score: 77
Period size: 21 Copynumber: 3.2 Consensus size: 21
73541813 TTGTGTAGGG
*
73541823 TTTTGAGTCTTTTTTTATATAT
1 TTTTTAGT-TTTTTTTATATAT
73541845 TTTTTAAG-TTTTTTTATATAT
1 TTTTT-AGTTTTTTTTATATAT
*
73541866 TCTTTAG-TTTTTTTATA-AT
1 TTTTTAGTTTTTTTTATATAT
73541885 TTTTT
1 TTTTT
73541890 GAGATGTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
19 6 0.15
20 12 0.29
21 17 0.41
22 4 0.10
23 2 0.05
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.72
Consensus pattern (21 bp):
TTTTTAGTTTTTTTTATATAT
Found at i:73542464 original size:19 final size:19
Alignment explanation
Indices: 73542436--73542475 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
73542426 CAACACCTCA
73542436 TTAACAGATTTATTAATTT
1 TTAACAGATTTATTAATTT
*
73542455 TTAACTGATTTATTAATTT
1 TTAACAGATTTATTAATTT
73542474 TT
1 TT
73542476 TAACCACAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (19 bp):
TTAACAGATTTATTAATTT
Found at i:73543467 original size:15 final size:15
Alignment explanation
Indices: 73543447--73543476 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73543437 CATTTTATTT
*
73543447 ATATTAGGATAATTA
1 ATATTAAGATAATTA
73543462 ATATTAAGATAATTA
1 ATATTAAGATAATTA
73543477 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:73549904 original size:6 final size:5
Alignment explanation
Indices: 73549891--73549983 Score: 73
Period size: 5 Copynumber: 17.6 Consensus size: 5
73549881 TTAATTTTAA
*
73549891 ATTTT ATTTCT ATTATT ATTAT ATTATT -TTATT ATTTT ATTTATT ATTTT
1 ATTTT ATTT-T ATT-TT ATTTT ATT-TT ATT-TT ATTTT A-TT-TT ATTTT
* * *
73549941 ATTTT ATTTT AATTT ATTTT ATTTT -TAATT ATTTT ATTAT ATT
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT-TTT ATTTT ATTTT ATT
73549984 AATAAAATTA
Statistics
Matches: 73, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
4 1 0.01
5 52 0.71
6 16 0.22
7 4 0.05
ACGTcount: A:0.27, C:0.01, G:0.00, T:0.72
Consensus pattern (5 bp):
ATTTT
Found at i:73549928 original size:40 final size:40
Alignment explanation
Indices: 73549884--73549973 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 40
73549874 TCAATCTTTA
73549884 ATTTTAAATT-TTATTTCTATTATTATTAT-A-TTATTTTATT
1 ATTTT-AATTATTATTT-TATT-TTATTATAATTTATTTTATT
* *
73549924 ATTTTATTTATTATTTTATTTTATTTTAATTTATTTTA-T
1 ATTTTAATTATTATTTTATTTTATTATAATTTATTTTATT
73549963 -TTTTAATTATT
1 ATTTTAATTATT
73549974 TTATTATATT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
38 16 0.36
39 9 0.20
40 19 0.43
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (40 bp):
ATTTTAATTATTATTTTATTTTATTATAATTTATTTTATT
Found at i:73549934 original size:25 final size:25
Alignment explanation
Indices: 73549906--73549984 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
73549896 ATTTCTATTA
73549906 TTATTATATTATTTTATTATTTTAT
1 TTATTATATTATTTTATTATTTTAT
* *
73549931 TTATTATTTTATTTTA-T-TTTAAT
1 TTATTATATTATTTTATTATTTTAT
* *
73549954 TTATTTTATT-TTTAATTATTTTAT
1 TTATTATATTATTTTATTATTTTAT
73549978 TATATTA
1 T-TATTA
73549985 ATAAAATTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
22 4 0.09
23 14 0.32
24 7 0.16
25 19 0.43
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (25 bp):
TTATTATATTATTTTATTATTTTAT
Found at i:73553299 original size:15 final size:15
Alignment explanation
Indices: 73553279--73553330 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
73553269 CATTTTATTT
73553279 ATATTAGGATAATTA
1 ATATTAGGATAATTA
*
73553294 ATATTAAGATAA-T-
1 ATATTAGGATAATTA
*
73553307 -TATTAGGATATTTA
1 ATATTAGGATAATTA
*
73553321 ATTTTAGGAT
1 ATATTAGGAT
73553331 TTTATTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
12 9 0.30
13 1 0.03
14 1 0.03
15 19 0.63
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.44
Consensus pattern (15 bp):
ATATTAGGATAATTA
Found at i:73553337 original size:13 final size:15
Alignment explanation
Indices: 73553303--73553339 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
73553293 AATATTAAGA
73553303 TAATTATTAGGATATT
1 TAATT-TTAGGATATT
73553319 TAATTTTAGGAT-TT
1 TAATTTTAGGATATT
73553333 T-ATTTTA
1 TAATTTTA
73553340 ATTATCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.29
14 3 0.14
15 7 0.33
16 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (15 bp):
TAATTTTAGGATATT
Found at i:73556273 original size:15 final size:15
Alignment explanation
Indices: 73556248--73556305 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
73556238 TCATATATAT
73556248 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
73556264 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
73556279 AATAATTTCAATCAA
1 TATAAATTCAATCAA
73556294 TATAAATTCAAT
1 TATAAATTCAAT
73556306 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:73557257 original size:31 final size:32
Alignment explanation
Indices: 73557199--73557262 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
73557189 CATACATTTG
*
73557199 TCATAATTTAATATATTTATTACATAAAAATC
1 TCATAATATAATATATTTATTACATAAAAATC
*
73557231 TCATAATATAAT-TATTTAATTA-ATAAATATC
1 TCATAATATAATATATTT-ATTACATAAAAATC
73557262 T
1 T
73557263 TATTTAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 14 0.48
32 15 0.52
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (32 bp):
TCATAATATAATATATTTATTACATAAAAATC
Found at i:73557413 original size:143 final size:143
Alignment explanation
Indices: 73557191--73558549 Score: 2598
Period size: 143 Copynumber: 9.5 Consensus size: 143
73557181 AATTTTACCA
* * * * * *
73557191 TACATTTGTCATAATTTAATATATTTAT--TACATAAAAATCTCATAATATAATTATTTAATTAA
1 TACAATTGTCATTATTTAATTTATTTATCAAACA-AAAAATCTCATTATTTAATTATTTAATTAA
73557254 TAAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGT
65 TAAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGT
73557319 ACCAATAAATTTAT
130 ACCAATAAATTTAT
73557333 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
1 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
73557398 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
66 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
73557463 CCAATAAATTTAT
131 CCAATAAATTTAT
*
73557476 TACAATTGCCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
1 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
73557541 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
66 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
73557606 CCAATAAATTTAT
131 CCAATAAATTTAT
73557619 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
1 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
73557684 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
66 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
73557749 CCAATAAATTTAT
131 CCAATAAATTTAT
*
73557762 TACAATTGCCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
1 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
73557827 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
66 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
73557892 CCAATAAATTTAT
131 CCAATAAATTTAT
73557905 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
1 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
73557970 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
66 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
73558035 CCAATAAATTTAT
131 CCAATAAATTTAT
*
73558048 TACAATTGCCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
1 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
73558113 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
66 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
73558178 CCAATAAATTTAT
131 CCAATAAATTTAT
73558191 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
1 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
73558256 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
66 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
73558321 CCAATAAATTTAT
131 CCAATAAATTTAT
73558334 TACAATTGTCATTATTTAATTTATTTATCAAAC-AAAAATCTCATTATTTAATTATTTAATTAAT
1 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
73558398 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
66 AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
73558463 CCAATAAATTTAT
131 CCAATAAATTTAT
*
73558476 TACAATTGCCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
1 TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
73558541 AAATATCTT
66 AAATATCTT
73558550 TTTTTTTCTA
Statistics
Matches: 1201, Mismatches: 13, Indels: 5
0.99 0.01 0.00
Matches are distributed among these distances:
142 166 0.14
143 1032 0.86
144 3 0.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (143 bp):
TACAATTGTCATTATTTAATTTATTTATCAAACAAAAAATCTCATTATTTAATTATTTAATTAAT
AAATATCTTATTTAATATCAAATACTAATATTACAATTGTACACACTTATATTTTCACATTTGTA
CCAATAAATTTAT
Found at i:73558666 original size:3 final size:3
Alignment explanation
Indices: 73558658--73558721 Score: 51
Period size: 3 Copynumber: 20.7 Consensus size: 3
73558648 TCAATTTATT
**
73558658 TAA TAA TAA TAA TAA T-A TAA TAA TTAA TAA CTAA T-A TATA TAAA TCG
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA -TAA TAA TA-A T-AA TAA
*
73558705 TAA TAA TAA TTA TAA TA
1 TAA TAA TAA TAA TAA TA
73558722 TATTTATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
2 4 0.08
3 34 0.69
4 10 0.20
5 1 0.02
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:73558708 original size:23 final size:19
Alignment explanation
Indices: 73558660--73558718 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
73558650 AATTTATTTA
73558660 ATAA-TAATAATAATATA-
1 ATAATTAATAATAATATAT
73558677 ATAATTAATAACTAATATAT
1 ATAATTAATAA-TAATATAT
73558697 ATAAATCGTAATAATAAT-TAT
1 AT-AAT--TAATAATAATATAT
73558718 A
1 A
73558719 ATATATTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.11
18 6 0.17
19 7 0.19
20 2 0.06
21 7 0.19
22 4 0.11
23 6 0.17
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (19 bp):
ATAATTAATAATAATATAT
Found at i:73560532 original size:22 final size:21
Alignment explanation
Indices: 73560496--73560539 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
73560486 AATTTGAGTA
73560496 AGAAATTAAGAGAGAATTGAG
1 AGAAATTAAGAGAGAATTGAG
* *
73560517 AGAAATTTGAGAGAGATTTGAG
1 AGAAA-TTAAGAGAGAATTGAG
73560539 A
1 A
73560540 ATGTGTGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.23
Consensus pattern (21 bp):
AGAAATTAAGAGAGAATTGAG
Found at i:73561461 original size:15 final size:16
Alignment explanation
Indices: 73561431--73561463 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
73561421 ATTCATGTCT
73561431 TTTTTTAAAATATTTA
1 TTTTTTAAAATATTTA
*
73561447 TTTTTTAATAT-TTTA
1 TTTTTTAAAATATTTA
73561462 TT
1 TT
73561464 CTATGTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTTTAAAATATTTA
Found at i:73563447 original size:29 final size:30
Alignment explanation
Indices: 73563387--73563455 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 30
73563377 TTATTAAATT
*
73563387 TAAATTTTAAAATTTAAAAAATAAAGAGAC
1 TAAATTTTAAAAGTTAAAAAATAAAGAGAC
* *
73563417 TAAATTTTTAAAGTT-AAAAATACAATA-AC
1 TAAATTTTAAAAGTTAAAAAATA-AAGAGAC
73563446 TAAATTTTAA
1 TAAATTTTAA
73563456 TAAGAATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 18 0.53
30 16 0.47
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (30 bp):
TAAATTTTAAAAGTTAAAAAATAAAGAGAC
Found at i:73564929 original size:16 final size:15
Alignment explanation
Indices: 73564903--73564952 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
73564893 ACATTATTAT
*
73564903 AAAACTAAAAATAAA
1 AAAATTAAAAATAAA
*
73564918 AAGAATTAAAAATATAT
1 AA-AATTAAAAATA-AA
73564935 AAAATTAAAAATAAA
1 AAAATTAAAAATAAA
73564950 AAA
1 AAA
73564953 TCTTAACGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 6 0.20
16 21 0.70
17 3 0.10
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (15 bp):
AAAATTAAAAATAAA
Found at i:73565762 original size:23 final size:25
Alignment explanation
Indices: 73565728--73565773 Score: 62
Period size: 23 Copynumber: 1.9 Consensus size: 25
73565718 TTAAATATAC
73565728 TTAACTATAAACT-TAA-ATTTTAA
1 TTAACTATAAACTCTAATATTTTAA
73565751 TTAA-TATAAAACTCTAATATTTT
1 TTAACTAT-AAACTCTAATATTTT
73565774 TTTATATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.15
23 9 0.45
24 3 0.15
25 5 0.25
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (25 bp):
TTAACTATAAACTCTAATATTTTAA
Found at i:73566562 original size:20 final size:21
Alignment explanation
Indices: 73566539--73566590 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
73566529 AAATCCGAAT
73566539 TAAAATAC-TAAAATTCAGGA
1 TAAAATACTTAAAATTCAGGA
*
73566559 TAAAAT-CTTAAAATTCATGA
1 TAAAATACTTAAAATTCAGGA
73566579 TAATAATA-TTAA
1 TAA-AATACTTAA
73566591 TGTGACATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.04
20 20 0.71
21 7 0.25
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.33
Consensus pattern (21 bp):
TAAAATACTTAAAATTCAGGA
Found at i:73569412 original size:15 final size:14
Alignment explanation
Indices: 73569375--73569404 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73569365 ATTTCTAAAA
*
73569375 TTAACTATTATTTC
1 TTAAATATTATTTC
73569389 TTAAATATTATTTC
1 TTAAATATTATTTC
73569403 TT
1 TT
73569405 TGAATATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (14 bp):
TTAAATATTATTTC
Found at i:73569794 original size:30 final size:30
Alignment explanation
Indices: 73569736--73569795 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73569726 AAGTATAAGG
* * *
73569736 ATTAAAATTGATCAATTCAATTAGTAAAAA
1 ATTAAAATTAATCAATTAAAGTAGTAAAAA
73569766 ATTAAAATTAATCAAATTAAAGTA-TAAAAA
1 ATTAAAATTAATC-AATTAAAGTAGTAAAAA
73569796 CTAAATTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (30 bp):
ATTAAAATTAATCAATTAAAGTAGTAAAAA
Found at i:73572130 original size:15 final size:15
Alignment explanation
Indices: 73572110--73572141 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
73572100 CATTTCACTA
*
73572110 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
73572125 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
73572140 TT
1 TT
73572142 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:73573809 original size:19 final size:17
Alignment explanation
Indices: 73573794--73573887 Score: 54
Period size: 17 Copynumber: 5.5 Consensus size: 17
73573784 ATTTTAATAG
73573794 TTTAATATTAAATTAAA
1 TTTAATATTAAATTAAA
73573811 TTTAATACTT--ATCTAAA
1 TTTAATA-TTAAAT-TAAA
* **
73573828 --TAGTATTTGATT-AA
1 TTTAATATTAAATTAAA
* *
73573842 TTTAATATTAAAGTGATTA
1 TTTAATATTAAA-TTA-AA
73573861 TCTTAATATTAAATTAAA
1 T-TTAATATTAAATTAAA
*
73573879 TTAAATATT
1 TTTAATATT
73573888 TATTTTGTCG
Statistics
Matches: 58, Mismatches: 9, Indels: 20
0.67 0.10 0.23
Matches are distributed among these distances:
14 4 0.07
15 5 0.09
16 11 0.19
17 19 0.33
18 4 0.07
19 4 0.07
20 11 0.19
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (17 bp):
TTTAATATTAAATTAAA
Found at i:73576979 original size:92 final size:92
Alignment explanation
Indices: 73576822--73576991 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 92
73576812 GGATGGTTGA
* *
73576822 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGTT
73576887 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
73576914 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG-AGTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAACTCGTTGAGT
73576978 TGAGTCCGAGTTCG
65 TGAGTCCGAGTTCG
73576992 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 57 0.77
93 17 0.23
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73576996 original size:45 final size:46
Alignment explanation
Indices: 73576826--73576998 Score: 196
Period size: 45 Copynumber: 3.8 Consensus size: 46
73576816 GGTTGAGCAT
* * *
73576826 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ATTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGC
* *
73576871 CCGAACTCGTTGAGTTGAGTCCGAGTTCG-TGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAAC---GC
*
73576916 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGC
*
73576964 CCG-AGTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
73576999 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 61 0.56
46 3 0.03
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGC
Found at i:73584410 original size:45 final size:45
Alignment explanation
Indices: 73584357--73584523 Score: 178
Period size: 45 Copynumber: 3.6 Consensus size: 45
73584347 TGGTTGAGCA
73584357 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAATG
* * *
73584402 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAA-T--G
* *
73584447 CATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAATG
* ** *
73584495 CCCGAGTTTGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
73584524 GCTTATGGGC
Statistics
Matches: 100, Mismatches: 13, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 32 0.32
46 24 0.24
47 28 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAATG
Found at i:73584522 original size:93 final size:92
Alignment explanation
Indices: 73584354--73584524 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 92
73584344 GGATGGTTGA
* * *
73584354 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGTT
73584419 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
** *
73584446 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGTTTGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAACTCGTTGAGT
73584511 TGAGTCCGAGTTCG
65 TGAGTCCGAGTTCG
73584525 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 32 0.44
93 40 0.56
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (92 bp):
GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73587642 original size:26 final size:26
Alignment explanation
Indices: 73587608--73587709 Score: 186
Period size: 26 Copynumber: 3.9 Consensus size: 26
73587598 TCCCATAATA
73587608 GAACATTTACCTAACCCATTATCATG
1 GAACATTTACCTAACCCATTATCATG
*
73587634 GAATATTTACCTAACCCATTATCATG
1 GAACATTTACCTAACCCATTATCATG
*
73587660 AAACATTTACCTAACCCATTATCATG
1 GAACATTTACCTAACCCATTATCATG
73587686 GAACATTTACCTAACCCATTATCA
1 GAACATTTACCTAACCCATTATCA
73587710 ATTTGTATCA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
GAACATTTACCTAACCCATTATCATG
Found at i:73593561 original size:18 final size:18
Alignment explanation
Indices: 73593535--73593569 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73593525 TCGTAACATT
*
73593535 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
73593553 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
73593570 CGTCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:73594240 original size:26 final size:26
Alignment explanation
Indices: 73594174--73594310 Score: 161
Period size: 26 Copynumber: 5.3 Consensus size: 26
73594164 CTGGAGGCCT
* * * *
73594174 AGCCTTTTTTAAT-AACCGGGGCAAA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
73594199 AGCCC-TTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
73594224 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
73594250 AGCCCTTTTTAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
73594276 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
73594302 AGCCCTTTT
1 AGCCCTTTT
73594311 GCTTCCTCCA
Statistics
Matches: 96, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
24 4 0.04
25 19 0.20
26 73 0.76
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:73594383 original size:20 final size:20
Alignment explanation
Indices: 73594358--73594414 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
73594348 TTATGAATAC
73594358 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
73594378 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73594398 GTCATGTGCATATCATA
1 ATCATGTGCATATCATA
73594415 TCAATATTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73594389 original size:11 final size:11
Alignment explanation
Indices: 73594358--73594413 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
73594348 TTATGAATAC
73594358 ATCATGTGCAT
1 ATCATGTGCAT
*
73594369 ATCA--TACAT
1 ATCATGTGCAT
73594378 ATCATGTGCAT
1 ATCATGTGCAT
*
73594389 ATCA--TACAT
1 ATCATGTGCAT
*
73594398 GTCATGTGCAT
1 ATCATGTGCAT
73594409 ATCAT
1 ATCAT
73594414 ATCAATATTG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:73594489 original size:25 final size:25
Alignment explanation
Indices: 73594461--73594508 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73594451 ATAATTAAAC
* * *
73594461 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
73594486 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
73594509 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:73607458 original size:30 final size:30
Alignment explanation
Indices: 73607422--73607478 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
73607412 TACCTTCCTG
*
73607422 CATCAAAAAATAGCCTAAACCATTCAACTA
1 CATCAAAAAACAGCCTAAACCATTCAACTA
* *
73607452 CATCAAAACACATCCTAAACCATTCAA
1 CATCAAAAAACAGCCTAAACCATTCAA
73607479 AGATGTATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.49, C:0.30, G:0.02, T:0.19
Consensus pattern (30 bp):
CATCAAAAAACAGCCTAAACCATTCAACTA
Found at i:73610481 original size:43 final size:43
Alignment explanation
Indices: 73610427--73610626 Score: 163
Period size: 43 Copynumber: 4.7 Consensus size: 43
73610417 AACATATACA
* *
73610427 ATGCCAATGTCCTAGACGTGATCTTATATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACGTGATCTTACATGTAATCAAACATCG
*
73610470 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACGTGATCTTACATGTAATCAAACATCG
* * * * * * * * *
73610513 ATGCCACTGTCCGAAACAG-GGTATTACACGAAATCAGATA-CG
1 ATGCCAATGTCCCAGAC-GTGATCTTACATGTAATCAAACATCG
* * * * * * *
73610555 ATGCCGATGTCCTAGACGTGGTCTTACACGTAAAACAGAA-TTTG
1 ATGCCAATGTCCCAGACGTGATCTTACATGT-AATCA-AACATCG
* *
73610599 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGATCTTACA
73610627 CGAAAAACAT
Statistics
Matches: 128, Mismatches: 24, Indels: 9
0.80 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 25 0.20
43 74 0.58
44 28 0.22
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGATCTTACATGTAATCAAACATCG
Found at i:73613694 original size:52 final size:50
Alignment explanation
Indices: 73613616--73613749 Score: 173
Period size: 50 Copynumber: 2.6 Consensus size: 50
73613606 ATTGTGAGAA
* *
73613616 CACATGTGTAGTACTATGTGCAGGCTACTATGAGTTTAA-A-ATGGTTTTAATT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGAG--TAACAGATGG--TTAAGT
* *
73613668 CACATGTGTAGTTCTAAGTGCAGGCTACTACGAGTAACAGATGGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGAGTAACAGATGGTTAAGT
*
73613718 CGCATGTGTAGTACTAAGTGCAGGCTACTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
73613750 CGTACCCGAT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
50 37 0.51
51 1 0.01
52 35 0.48
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGAGTAACAGATGGTTAAGT
Found at i:73614964 original size:30 final size:29
Alignment explanation
Indices: 73614928--73614988 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
73614918 AAAAGGAAGT
73614928 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
73614958 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
73614987 TT
1 TT
73614989 CGGTTACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:73633928 original size:28 final size:28
Alignment explanation
Indices: 73633888--73633949 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
73633878 ATAATTGTAT
* *
73633888 TGTTGATGATGAAGTTATTAGAGGATAA
1 TGTTGATGATGAAGCTATTACAGGATAA
73633916 TGTTGATGATGAAGCTATTACAGGATAA
1 TGTTGATGATGAAGCTATTACAGGATAA
*
73633944 TATTGA
1 TGTTGA
73633950 ATTTGTTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35
Consensus pattern (28 bp):
TGTTGATGATGAAGCTATTACAGGATAA
Found at i:73638983 original size:115 final size:115
Alignment explanation
Indices: 73638771--73638983 Score: 320
Period size: 115 Copynumber: 1.9 Consensus size: 115
73638761 GAAAAAATTA
*
73638771 AGCACAACGCCGTCGTTTTATGTTGAGCTTTAGTGGCATTAACGCGCTTTTTGAAAAACACCACT
1 AGCACAACGCCGTCGTTTTATGTTGAGCTTCAGTGGCATTAACGCGCTTTTTGAAAAACACCACT
* * * * *
73638836 ATAGGTCGAGCATTAGCGGCGTTTTTTTAAAAAAACGCCGCTATAGATCG
66 ATAGATCGAGCATTAACAGCGTCTTTTAAAAAAAACGCCGCTATAGATCG
* ** *
73638886 AGCACAACGCCGTCGTTTTATGTTGAGCTTCAGTGGCATTAGCAGCGCTTTTTGAAAAATGCCGC
1 AGCACAACGCCGTCGTTTTATGTTGAGCTTCAGTGGCATTAAC-GCGCTTTTTGAAAAACACCAC
73638951 TATAGATCGAGCATTAACAGCG-CTTTTAAAAAA
65 TATAGATCGAGCATTAACAGCGTCTTTTAAAAAA
73638984 CCACCGTCAT
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
115 50 0.57
116 37 0.43
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (115 bp):
AGCACAACGCCGTCGTTTTATGTTGAGCTTCAGTGGCATTAACGCGCTTTTTGAAAAACACCACT
ATAGATCGAGCATTAACAGCGTCTTTTAAAAAAAACGCCGCTATAGATCG
Found at i:73639057 original size:39 final size:40
Alignment explanation
Indices: 73638921--73639066 Score: 181
Period size: 40 Copynumber: 3.7 Consensus size: 40
73638911 AGCTTCAGTG
*
73638921 GCATTAGCAGCGCTTTTTGAAAAATGCCGCTATAGATCGA
1 GCATTAGCAGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * *
73638961 GCATTAACAGCGC-TTTTAAAAAACCACCG-TCATAGATCGA
1 GCATTAGCAGCGCTTTTTGAAAAA-CGCCGCT-ATAGATCGA
* * *
73639001 GCAGTAGCGGCGCTTTTT-AAAAACGCCGCTATAGGTCGA
1 GCATTAGCAGCGCTTTTTGAAAAACGCCGCTATAGATCGA
*
73639040 CCATTAGCAGCGCTTTTTGAAAAACGC
1 GCATTAGCAGCGCTTTTTGAAAAACGC
73639067 TGCAAAAAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 37 0.42
40 48 0.54
41 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (40 bp):
GCATTAGCAGCGCTTTTTGAAAAACGCCGCTATAGATCGA
Found at i:73639279 original size:29 final size:29
Alignment explanation
Indices: 73639247--73639515 Score: 130
Period size: 29 Copynumber: 9.2 Consensus size: 29
73639237 ATATAAAATC
73639247 CTAAATCTATAAA-CCTTAAACCCT-AAACA
1 CTAAA-CTATAAATCC-TAAACCCTAAAACA
* *
73639276 CTAAACCATAAATCCTAAACCCTAAAACT
1 CTAAACTATAAATCCTAAACCCTAAAACA
* * * *
73639305 CTAAACTAT-AGTCACTAAACTCTTAAACC
1 CTAAACTATAAATC-CTAAACCCTAAAACA
* *
73639334 CTTAAA-TATAAAATCCTAAATCCTAAAACT
1 C-TAAACTAT-AAATCCTAAACCCTAAAACA
* * * * *
73639364 TTAAA-TCTGAATCACTAAACCCTTAAACC
1 CTAAACTATAAATC-CTAAACCCTAAAACA
* *
73639393 CTTAAA-TACAAATCTTAAACCCT-AAAC-
1 C-TAAACTATAAATCCTAAACCCTAAAACA
* *
73639420 CTTAAA-TCATAAATCCTAAACCATAAAACC
1 C-TAAACT-ATAAATCCTAAACCCTAAAACA
* * * *
73639450 CTAAACTATAGA-CAGTAAACCCTTAAACC
1 CTAAACTATAAATC-CTAAACCCTAAAACA
* *
73639479 CTTAAA-TACAAAATCCTAAATCCTAAAACTA
1 C-TAAACTA-TAAATCCTAAACCCTAAAAC-A
73639510 -TAAACT
1 CTAAACT
73639516 GTAAGAATAA
Statistics
Matches: 186, Mismatches: 36, Indels: 35
0.72 0.14 0.14
Matches are distributed among these distances:
27 7 0.04
28 39 0.21
29 92 0.49
30 44 0.24
31 4 0.02
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.25
Consensus pattern (29 bp):
CTAAACTATAAATCCTAAACCCTAAAACA
Found at i:73639280 original size:14 final size:14
Alignment explanation
Indices: 73639263--73639301 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
73639253 CTATAAACCT
73639263 TAAACCCTAAA-CAC
1 TAAACCCTAAATC-C
*
73639277 TAAACCATAAATCC
1 TAAACCCTAAATCC
73639291 TAAACCCTAAA
1 TAAACCCTAAA
73639302 ACTCTAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 21 0.95
15 1 0.05
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (14 bp):
TAAACCCTAAATCC
Found at i:73639360 original size:59 final size:58
Alignment explanation
Indices: 73639285--73639451 Score: 189
Period size: 59 Copynumber: 2.9 Consensus size: 58
73639275 ACTAAACCAT
*
73639285 AAATCCTAAACCCTAAAACTCTAAA-CT-ATAGTCACTAAACTCTTAAACCCTTAAATATA
1 AAATCCTAAACCCTAAAACTCTAAATCTGA-A-TCACTAAACCCTTAAACCCTTAAATA-A
* * *
73639344 AAATCCTAAATCCTAAAACTTTAAATCTGAATCACTAAACCCTTAAACCCTTAAATAC
1 AAATCCTAAACCCTAAAACTCTAAATCTGAATCACTAAACCCTTAAACCCTTAAATAA
* * * * *
73639402 AAATCTTAAACCCTAAACCT-TAAATCATAAATC-CTAAACCATAAAACCCT
1 AAATCCTAAACCCTAAAACTCTAAATC-TGAATCACTAAACCCTTAAACCCT
73639452 AAACTATAGA
Statistics
Matches: 95, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
57 21 0.22
58 22 0.23
59 48 0.51
60 3 0.03
61 1 0.01
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.26
Consensus pattern (58 bp):
AAATCCTAAACCCTAAAACTCTAAATCTGAATCACTAAACCCTTAAACCCTTAAATAA
Found at i:73639426 original size:21 final size:21
Alignment explanation
Indices: 73639402--73639446 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
73639392 CCTTAAATAC
* *
73639402 AAATCTTAAACCCTAAACCTT
1 AAATCATAAACCCTAAACCAT
*
73639423 AAATCATAAATCCTAAACCAT
1 AAATCATAAACCCTAAACCAT
73639444 AAA
1 AAA
73639447 ACCCTAAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATCATAAACCCTAAACCAT
Found at i:73639438 original size:86 final size:88
Alignment explanation
Indices: 73639319--73639505 Score: 224
Period size: 86 Copynumber: 2.1 Consensus size: 88
73639309 ACTATAGTCA
* ** *
73639319 CTAAACTCTTAAACCCTTAAATATAAAATCCTAAATCC-TAAAACTTTAAATCTGA-A-TCACTA
1 CTAAAC-CCTAAACCCTTAAATATAAAATCCTAAA-CCATAAAACCCTAAA-CT-ATAGACACTA
73639381 AACCCTTAAACCCTTAAATAC-AAATC
62 AACCCTTAAACCCTTAAATACAAAATC
* *
73639407 TTAAACCCTAAA-CCTTAAATCAT-AAATCCTAAACCATAAAACCCTAAACTATAGACAGTAAAC
1 CTAAACCCTAAACCCTTAAAT-ATAAAATCCTAAACCATAAAACCCTAAACTATAGACACTAAAC
73639470 CCTTAAACCCTTAAATACAAAATC
65 CCTTAAACCCTTAAATACAAAATC
*
73639494 CTAAATCCTAAA
1 CTAAACCCTAAA
73639506 ACTATAAACT
Statistics
Matches: 86, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
84 1 0.01
85 5 0.06
86 53 0.62
87 22 0.26
88 5 0.06
ACGTcount: A:0.47, C:0.26, G:0.02, T:0.26
Consensus pattern (88 bp):
CTAAACCCTAAACCCTTAAATATAAAATCCTAAACCATAAAACCCTAAACTATAGACACTAAACC
CTTAAACCCTTAAATACAAAATC
Found at i:73639454 original size:15 final size:14
Alignment explanation
Indices: 73639408--73639455 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
73639398 ATACAAATCT
* *
73639408 TAAACCCTAAACCT
1 TAAACCATAAACCC
* *
73639422 TAAATCATAAATCC
1 TAAACCATAAACCC
73639436 TAAACCATAAAACCC
1 TAAACCAT-AAACCC
73639451 TAAAC
1 TAAAC
73639456 TATAGACAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:73642665 original size:14 final size:14
Alignment explanation
Indices: 73642646--73642708 Score: 90
Period size: 14 Copynumber: 4.2 Consensus size: 14
73642636 GTGTTAGTCG
73642646 ATAATGCCATTACC
1 ATAATGCCATTACC
73642660 ATAATGCCATTACCATC
1 ATAATGCCATTA-C--C
73642677 GATAATGCCATTACC
1 -ATAATGCCATTACC
73642692 ATAATGCCATTACC
1 ATAATGCCATTACC
73642706 ATA
1 ATA
73642709 TGAAAACAAG
Statistics
Matches: 45, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
14 29 0.64
15 2 0.04
17 2 0.04
18 12 0.27
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.29
Consensus pattern (14 bp):
ATAATGCCATTACC
Found at i:73642683 original size:18 final size:18
Alignment explanation
Indices: 73642643--73642693 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
73642633 ATAGTGTTAG
73642643 TCGATAATGCCATTA-C-
1 TCGATAATGCCATTACCA
73642659 -C-ATAATGCCATTACCA
1 TCGATAATGCCATTACCA
73642675 TCGATAATGCCATTACCA
1 TCGATAATGCCATTACCA
73642693 T
1 T
73642694 AATGCCATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 12 0.39
15 2 0.06
17 1 0.03
18 16 0.52
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.29
Consensus pattern (18 bp):
TCGATAATGCCATTACCA
Found at i:73642684 original size:32 final size:32
Alignment explanation
Indices: 73642643--73642707 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
73642633 ATAGTGTTAG
73642643 TCGATAATGCCATTACCATAATGCCATTACCA
1 TCGATAATGCCATTACCATAATGCCATTACCA
73642675 TCGATAATGCCATTACCATAATGCCATTACCA
1 TCGATAATGCCATTACCATAATGCCATTACCA
73642707 T
1 T
73642708 ATGAAAACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.29
Consensus pattern (32 bp):
TCGATAATGCCATTACCATAATGCCATTACCA
Found at i:73643014 original size:15 final size:15
Alignment explanation
Indices: 73642996--73643043 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
73642986 TTAATTTATT
73642996 TAAATATTATTTAAC
1 TAAATATTATTTAAC
* **
73643011 TAAA-ATAATTTATT
1 TAAATATTATTTAAC
*
73643025 TAAATATTATTTAAG
1 TAAATATTATTTAAC
73643040 TAAA
1 TAAA
73643044 ATAATTTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (15 bp):
TAAATATTATTTAAC
Found at i:73643019 original size:29 final size:29
Alignment explanation
Indices: 73642987--73643050 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
73642977 TAATTTGGAT
73642987 TAATTTATTTAAATATTATTTAACTAAAA
1 TAATTTATTTAAATATTATTTAACTAAAA
*
73643016 TAATTTATTTAAATATTATTTAAGTAAAA
1 TAATTTATTTAAATATTATTTAACTAAAA
73643045 TAATTT
1 TAATTT
73643051 TTTTCCATGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (29 bp):
TAATTTATTTAAATATTATTTAACTAAAA
Found at i:73643158 original size:195 final size:193
Alignment explanation
Indices: 73642823--73643186 Score: 613
Period size: 195 Copynumber: 1.9 Consensus size: 193
73642813 TAATTTGGAT
*
73642823 TAATGTATTTAAATATTATTTAATTAAAATAATTTTTTTTCCATATGATTTACCACATCGTCAAA
1 TAATGTATTTAAATATTATTTAAGTAAAATAATTTTTTTTCCATATGATTTACCACATCGTCAAA
* * *
73642888 TTTTTTTTATTATTTCTTTTTCATGGAACAAAGTTGACATTTCATCTTATAAGGTTTTCAACTTT
66 TTTTTTTTATTATTTATTTTTCATAGAACAAAGTTGACATTTCATCTTATAAGGCTTTCAACTTT
73642953 TTATACACAATTTTTAAAATTACATAATTTGGATTAATTTATTTAAATATTATTTAACTAAAA
131 TTATACACAATTTTTAAAATTACATAATTTGGATTAATTTATTTAAATATTATTTAACTAAAA
* * *
73643016 TAATTTATTTAAATATTATTTAAGTAAAATAA-TTTTTTTCCATGTGATTTTTCCACATCGTCAA
1 TAATGTATTTAAATATTATTTAAGTAAAATAATTTTTTTTCCATATGA-TTTACCACATCGTCAA
*
73643080 ATTTTATTTTTATTATTTATTTTTCATAGAACAAAGTTGACATTTCATCTTATACGGCTTTCAAC
65 A-TTT-TTTTTATTATTTATTTTTCATAGAACAAAGTTGACATTTCATCTTATAAGGCTTTCAAC
*
73643145 TTTTTATACACAATTTTTTAAATTACATAATTTGGATTAATT
128 TTTTTATACACAATTTTTAAAATTACATAATTTGGATTAATT
73643187 ATGTAATAAC
Statistics
Matches: 159, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
192 14 0.09
193 46 0.29
194 3 0.02
195 96 0.60
ACGTcount: A:0.34, C:0.10, G:0.06, T:0.49
Consensus pattern (193 bp):
TAATGTATTTAAATATTATTTAAGTAAAATAATTTTTTTTCCATATGATTTACCACATCGTCAAA
TTTTTTTTATTATTTATTTTTCATAGAACAAAGTTGACATTTCATCTTATAAGGCTTTCAACTTT
TTATACACAATTTTTAAAATTACATAATTTGGATTAATTTATTTAAATATTATTTAACTAAAA
Found at i:73643206 original size:9 final size:9
Alignment explanation
Indices: 73643192--73643256 Score: 55
Period size: 9 Copynumber: 7.4 Consensus size: 9
73643182 TAATTATGTA
73643192 ATAACTTAC
1 ATAACTTAC
73643201 ATAACTTAC
1 ATAACTTAC
*
73643210 AAAACTTAC
1 ATAACTTAC
73643219 ATAA--TAC
1 ATAACTTAC
* *
73643226 ATAA-ATAT
1 ATAACTTAC
* *
73643234 ATATCATATC
1 ATAACTTA-C
73643244 ATAACTTAC
1 ATAACTTAC
73643253 ATAA
1 ATAA
73643257 TACATAAATA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
7 7 0.15
8 5 0.11
9 28 0.61
10 6 0.13
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (9 bp):
ATAACTTAC
Found at i:73643250 original size:34 final size:34
Alignment explanation
Indices: 73643212--73643326 Score: 176
Period size: 34 Copynumber: 3.3 Consensus size: 34
73643202 TAACTTACAA
73643212 AACTTACATAATACATAAATATATATCATATCAT
1 AACTTACATAATACATAAATATATATCATATCAT
*
73643246 AACTTACATAATACATAAATATATATCAGATCAT
1 AACTTACATAATACATAAATATATATCATATCAT
* * *
73643280 AACATACATACCTTACATAAATGTATATCATATCAT
1 AACTTACATA--ATACATAAATATATATCATATCAT
73643316 AACTTACATAA
1 AACTTACATAA
73643327 CTTACAAAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
34 42 0.58
36 30 0.42
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.33
Consensus pattern (34 bp):
AACTTACATAATACATAAATATATATCATATCAT
Found at i:73648460 original size:14 final size:14
Alignment explanation
Indices: 73648436--73648470 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
73648426 TTAAATATTT
73648436 ATAAT-GTTTAATC
1 ATAATGGTTTAATC
*
73648449 ATAATGGTTTAATT
1 ATAATGGTTTAATC
73648463 ATAATGGT
1 ATAATGGT
73648471 ATATTCATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (14 bp):
ATAATGGTTTAATC
Found at i:73649240 original size:43 final size:43
Alignment explanation
Indices: 73649167--73649564 Score: 381
Period size: 43 Copynumber: 9.3 Consensus size: 43
73649157 TCTGCTAAAG
* * * *
73649167 TTAGTGGTGTTTTTAAT-AAAAGCGCTGCTAAAGGTCATGTTCT
1 TTAGCGGTGTTTGT-ATGAAAAGCGCCGCTAAAGGTCACGTTCT
*
73649210 TTAGCGGTGTTTGTATGAAAAGCTCCGCTAAAGGTCACGTTCT
1 TTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCACGTTCT
* * ** * * * *
73649253 TTAACAGCATTTGTATGCAAGGCGCCACTAAAGGTCACATTCT
1 TTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCACGTTCT
*
73649296 TTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCAAGTTCT
1 TTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCACGTTCT
* * * *
73649339 GTAGCGGCATTTTTG-A-GAAAAGTGCCGCTATAGGTCACGTTCT
1 TTAGCGG--TGTTTGTATGAAAAGCGCCGCTAAAGGTCACGTTCT
* * * * *
73649382 ATAGCGGCGTTTGAATGAAAAGCGCCACTAAATGTCACGTTCT
1 TTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCACGTTCT
* ** * *
73649425 TTAGCAGCATTTGTCTGAAAAGTGCCGCTAAAGGTCACGTTCT
1 TTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCACGTTCT
* * *
73649468 TTAGCGGTGTTTGTGTGAAAAGCGTCACTAAAGGTCACGTTCT
1 TTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCACGTTCT
* * * * ** ** *
73649511 TTAGCGGCGCTT-TCTCAAAAATGCCGCTAAAAATCAAGTTCT
1 TTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCACGTTCT
73649553 TTAGCGGTGTTT
1 TTAGCGGTGTTT
73649565 TTTTACATAA
Statistics
Matches: 287, Mismatches: 63, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
41 4 0.01
42 34 0.12
43 243 0.85
44 1 0.00
45 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCACGTTCT
Found at i:73649296 original size:86 final size:86
Alignment explanation
Indices: 73649184--73649564 Score: 442
Period size: 86 Copynumber: 4.4 Consensus size: 86
73649174 TGTTTTTAAT
* * * * *
73649184 AAAAGCGCTGCTAAAGGTCATGTTCTTTAGCGGTGTTTGTATGAAAAGCTCCGCTAAAGGTCACG
1 AAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTTGTATGAAAAGCGCCACTAAAGGTCACG
*
73649249 TTCTTTAACAGCATTTGTATG
66 TTCTTTAGCAGCATTTGTATG
* * * * * * *
73649270 CAAGGCGCCACTAAAGGTCACATTCTTTAGCGGTGTTTGTATGAAAAGCGCCGCTAAAGGTCAAG
1 AAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTTGTATGAAAAGCGCCACTAAAGGTCACG
* * *
73649335 TTCTGTAGCGGCATTTTTGA-G
66 TTCTTTAGCAGCATTTGT-ATG
* * * * *
73649356 AAAAGTGCCGCTATAGGTCACGTTCTATAGCGGCGTTTGAATGAAAAGCGCCACTAAATGTCACG
1 AAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTTGTATGAAAAGCGCCACTAAAGGTCACG
*
73649421 TTCTTTAGCAGCATTTGTCTG
66 TTCTTTAGCAGCATTTGTATG
* *
73649442 AAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTTGTGTGAAAAGCGTCACTAAAGGTCACG
1 AAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTTGTATGAAAAGCGCCACTAAAGGTCACG
* ** * *
73649507 TTCTTTAGCGGCGCTT-TCTC
66 TTCTTTAGCAGCATTTGTATG
* ** *
73649527 AAAAATGCCGCTAAAAATCAAGTTCTTTAGCGGTGTTT
1 AAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTT
73649565 TTTTACATAA
Statistics
Matches: 250, Mismatches: 43, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
85 37 0.15
86 212 0.85
87 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (86 bp):
AAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGTGTTTGTATGAAAAGCGCCACTAAAGGTCACG
TTCTTTAGCAGCATTTGTATG
Found at i:73650056 original size:12 final size:12
Alignment explanation
Indices: 73650039--73650063 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73650029 GTTATATTTA
73650039 TTAGGTACTTTG
1 TTAGGTACTTTG
73650051 TTAGGTACTTTG
1 TTAGGTACTTTG
73650063 T
1 T
73650064 ATAGTGTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (12 bp):
TTAGGTACTTTG
Found at i:73655408 original size:25 final size:23
Alignment explanation
Indices: 73655348--73655410 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 23
73655338 ATCATTTTCC
73655348 GCTCTTTTGAGCTATGAACAGTAA
1 GCTC-TTTGAGCTATGAACAGTAA
73655372 GCTCTTCCTGAGCTGAT-AGACAGTAA
1 GCTCTT--TGAGCT-ATGA-ACAGTAA
73655398 GCTCTATTGAGCT
1 GCTCT-TTGAGCT
73655411 TAAATGATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
23 2 0.06
24 4 0.12
25 13 0.38
26 14 0.41
27 1 0.03
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (23 bp):
GCTCTTTGAGCTATGAACAGTAA
Found at i:73655432 original size:23 final size:24
Alignment explanation
Indices: 73655406--73655497 Score: 82
Period size: 24 Copynumber: 3.8 Consensus size: 24
73655396 AAGCTCTATT
*
73655406 GAGCTTAAATGA-TAAGCTCAGAC
1 GAGCTTAAATCAGTAAGCTCAGAC
*
73655429 GAGC-TAAATCAGTAAGCTCATAC
1 GAGCTTAAATCAGTAAGCTCAGAC
* **
73655452 GAGCTGAGAA-CAGTAAGCTCTTAC
1 GAGCTTA-AATCAGTAAGCTCAGAC
*
73655476 GAGCTGATATATCAGTAAGCTC
1 GAGCT--TAAATCAGTAAGCTC
73655498 TTATGAGCTG
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
22 6 0.11
23 18 0.32
24 19 0.33
25 3 0.05
26 11 0.19
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.23
Consensus pattern (24 bp):
GAGCTTAAATCAGTAAGCTCAGAC
Found at i:73655497 original size:26 final size:25
Alignment explanation
Indices: 73655366--73655507 Score: 118
Period size: 26 Copynumber: 5.8 Consensus size: 25
73655356 GAGCTATGAA
*
73655366 CAGTAAGCTCTTCCTGAGCTGATAGA-
1 CAGTAAGCTCTTAC-GAGCTGATA-AT
* *
73655392 CAGTAAGCTC-TATTGAGCTTA-AAT
1 CAGTAAGCTCTTA-CGAGCTGATAAT
* **
73655416 GA-TAAGCTCAGACGAGCT-A-AAT
1 CAGTAAGCTCTTACGAGCTGATAAT
* *
73655438 CAGTAAGCTCATACGAGCTGAGAA-
1 CAGTAAGCTCTTACGAGCTGATAAT
73655462 CAGTAAGCTCTTACGAGCTGATATAT
1 CAGTAAGCTCTTACGAGCTGATA-AT
*
73655488 CAGTAAGCTCTTATGAGCTG
1 CAGTAAGCTCTTACGAGCTG
73655508 CGGTGAGTCC
Statistics
Matches: 97, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
22 5 0.05
23 28 0.29
24 25 0.26
25 10 0.10
26 29 0.30
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (25 bp):
CAGTAAGCTCTTACGAGCTGATAAT
Found at i:73655506 original size:50 final size:49
Alignment explanation
Indices: 73655348--73655507 Score: 145
Period size: 50 Copynumber: 3.3 Consensus size: 49
73655338 ATCATTTTCC
* *
73655348 GCTCTTTTGAGCT-ATGAACAGTAAGCTCTTCCTGAGCTGATAGA-CAGTAA
1 GCTCTTATGAGCTGA-GAACAGTAAGCTCTTAC-GAGCTGATA-ATCAGTAA
* * **
73655398 GCTC-TATTGAGCTTA-AA-TGATAAGCTCAGACGAGCT-A-AATCAGTAA
1 GCTCTTA-TGAGCTGAGAACAG-TAAGCTCTTACGAGCTGATAATCAGTAA
* *
73655444 GCTCATACGAGCTGAGAACAGTAAGCTCTTACGAGCTGATATATCAGTAA
1 GCTCTTATGAGCTGAGAACAGTAAGCTCTTACGAGCTGATA-ATCAGTAA
73655494 GCTCTTATGAGCTG
1 GCTCTTATGAGCTG
73655508 CGGTGAGTCC
Statistics
Matches: 88, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
45 1 0.01
46 17 0.19
47 19 0.22
48 8 0.09
49 12 0.14
50 30 0.34
51 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (49 bp):
GCTCTTATGAGCTGAGAACAGTAAGCTCTTACGAGCTGATAATCAGTAA
Found at i:73660079 original size:31 final size:31
Alignment explanation
Indices: 73660041--73660102 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
73660031 CTTTAGTATA
73660041 TTGTTAAATAAGGTAATGCAATTCATGATTT
1 TTGTTAAATAAGGTAATGCAATTCATGATTT
*
73660072 TTGTTAAATAAGGTAATGTAATTCATGATTT
1 TTGTTAAATAAGGTAATGCAATTCATGATTT
73660103 GTGTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (31 bp):
TTGTTAAATAAGGTAATGCAATTCATGATTT
Found at i:73667363 original size:21 final size:22
Alignment explanation
Indices: 73667324--73667371 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
73667314 CTATCCGCTA
*
73667324 TATGCACTACCAATGATAAATC
1 TATGTACTACCAATGATAAATC
*
73667346 TATGTACTA-CAATTATAAATC
1 TATGTACTACCAATGATAAATC
*
73667367 CATGT
1 TATGT
73667372 TCCATATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (22 bp):
TATGTACTACCAATGATAAATC
Found at i:73669286 original size:110 final size:110
Alignment explanation
Indices: 73669088--73669307 Score: 413
Period size: 110 Copynumber: 2.0 Consensus size: 110
73669078 TGCGCAAAAA
73669088 TTCTATATAAGCTTCCTCCTAGAAAAATGCCTCAAATTCGATCAAACCATTAAAATGGTGGAAAT
1 TTCTATATAAGCTTCCTCCTAGAAAAATGCCTCAAATTCGATCAAACCATTAAAATGGTGGAAAT
73669153 AAACACAGTGATCTACATTAAAATTCCAAATCAGAAATTAAAACT
66 AAACACAGTGATCTACATTAAAATTCCAAATCAGAAATTAAAACT
* *
73669198 TTCTGTATAAGCTTCCTCCTAGAAAAATGCCTCAAATTTGATCAAACCATTAAAATGGTGGAAAT
1 TTCTATATAAGCTTCCTCCTAGAAAAATGCCTCAAATTCGATCAAACCATTAAAATGGTGGAAAT
*
73669263 AAACACAGTGATCTACATTAAAATTCCAGATCAGAAATTAAAACT
66 AAACACAGTGATCTACATTAAAATTCCAAATCAGAAATTAAAACT
73669308 ACAAAAACCA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 107 1.00
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.28
Consensus pattern (110 bp):
TTCTATATAAGCTTCCTCCTAGAAAAATGCCTCAAATTCGATCAAACCATTAAAATGGTGGAAAT
AAACACAGTGATCTACATTAAAATTCCAAATCAGAAATTAAAACT
Found at i:73672234 original size:19 final size:18
Alignment explanation
Indices: 73672212--73672275 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
73672202 AAATTACAAA
73672212 AAAAATTAAAATATTTTT
1 AAAAATTAAAATATTTTT
* *
73672230 CAAAATTTTAATATATTTTT
1 -AAAA-ATTAAAATATTTTT
* **
73672250 TAAAATTCAAAATATTAAT
1 AAAAATT-AAAATATTTTT
73672269 AAAAATT
1 AAAAATT
73672276 TCACATTTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
18 2 0.06
19 21 0.60
20 12 0.34
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAAATTAAAATATTTTT
Found at i:73672240 original size:20 final size:19
Alignment explanation
Indices: 73672212--73672265 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
73672202 AAATTACAAA
*
73672212 AAAAATTAAAATATTTTTC
1 AAAATTTAAAATATTTTTC
* *
73672231 AAAATTTTAATATATTTTTT
1 AAAA-TTTAAAATATTTTTC
*
73672251 AAAATTCAAAATATT
1 AAAATTTAAAATATT
73672266 AATAAAAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (19 bp):
AAAATTTAAAATATTTTTC
Found at i:73672366 original size:40 final size:40
Alignment explanation
Indices: 73672293--73672371 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
73672283 TATATTGTTA
*
73672293 AAAAAATTATAAAATTTTAATAAATTCTAAAAATATATAAT
1 AAAAAAGTATAAAATTTTAATAAATTCTAAAAATA-ATAAT
73672334 AAAAAAGT-TAAAATTTTAA-AAATTTGCT-AAAATAATAA
1 AAAAAAGTATAAAATTTTAATAAA-TT-CTAAAAATAATAA
73672372 CTTTGGGTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
39 7 0.20
40 19 0.54
41 9 0.26
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (40 bp):
AAAAAAGTATAAAATTTTAATAAATTCTAAAAATAATAAT
Found at i:73673160 original size:16 final size:16
Alignment explanation
Indices: 73673141--73673192 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
73673131 TTAAATTATA
73673141 ATATTTTTGAATTCAT
1 ATATTTTTGAATTCAT
*
73673157 ATA--TTTAAATT-AT
1 ATATTTTTGAATTCAT
73673170 AATATTTTTGAATTCAT
1 -ATATTTTTGAATTCAT
73673187 ATATTT
1 ATATTT
73673193 AAATGTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 2 0.07
14 10 0.33
16 16 0.53
17 2 0.07
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (16 bp):
ATATTTTTGAATTCAT
Found at i:73673165 original size:30 final size:30
Alignment explanation
Indices: 73673131--73673202 Score: 135
Period size: 30 Copynumber: 2.4 Consensus size: 30
73673121 CCCATTAATG
73673131 TTAAATTATAATATTTTTGAATTCATATAT
1 TTAAATTATAATATTTTTGAATTCATATAT
73673161 TTAAATTATAATATTTTTGAATTCATATAT
1 TTAAATTATAATATTTTTGAATTCATATAT
73673191 TTAAATGTATAA
1 TTAAAT-TATAA
73673203 ACATGTTACT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 36 0.88
31 5 0.12
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (30 bp):
TTAAATTATAATATTTTTGAATTCATATAT
Found at i:73673167 original size:14 final size:14
Alignment explanation
Indices: 73673150--73673196 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
73673140 AATATTTTTG
73673150 AATTCATATATTTA
1 AATTCATATATTTA
*
73673164 AATT-ATAATATTTTTG
1 AATTCAT-ATA--TTTA
73673180 AATTCATATATTTA
1 AATTCATATATTTA
73673194 AAT
1 AAT
73673197 GTATAAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 2 0.07
14 13 0.48
16 10 0.37
17 2 0.07
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (14 bp):
AATTCATATATTTA
Done.