Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 234 of 325
Found at i:73683742 original size:67 final size:67
Alignment explanation
Indices: 73683634--73683766 Score: 239
Period size: 67 Copynumber: 2.0 Consensus size: 67
73683624 AATGGATGGT
*
73683634 TATTTATAAGTAAACTATCAGAATTCTAATTGGATTCGTTGATGGAGTTTTACTTGATAGTAGAT
1 TATTTATAAGTAAACTATCAGAATTCTAATTGGATTCGTTGATGGAATTTTACTTGATAGTAGAT
73683699 AA
66 AA
* *
73683701 TATTTATAAGTAAACTATCAGAATTCTAATTGGATTTGTTGATGTAATTTTACTTGATAGTAGAT
1 TATTTATAAGTAAACTATCAGAATTCTAATTGGATTCGTTGATGGAATTTTACTTGATAGTAGAT
73683766 A
66 A
73683767 GGTAAGATAT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (67 bp):
TATTTATAAGTAAACTATCAGAATTCTAATTGGATTCGTTGATGGAATTTTACTTGATAGTAGAT
AA
Found at i:73687642 original size:28 final size:28
Alignment explanation
Indices: 73687610--73687665 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
73687600 AAAAAGTTTC
73687610 ATTATAATCATAACTTTAAACTTTTTAA
1 ATTATAATCATAACTTTAAACTTTTTAA
73687638 ATTATAATCATAACTTTAAACTTTTTAA
1 ATTATAATCATAACTTTAAACTTTTTAA
73687666 CTATGCATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (28 bp):
ATTATAATCATAACTTTAAACTTTTTAA
Found at i:73687756 original size:28 final size:28
Alignment explanation
Indices: 73687725--73687779 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
73687715 TTTATTTTCT
73687725 ATTTAAAAGTTT-TAAAAAATTATGTTTA
1 ATTTAAAA-TTTATAAAAAATTATGTTTA
* *
73687753 ATTTATAATTTAATAAAAAGTTATGTT
1 ATTTAAAATTT-ATAAAAAATTATGTT
73687780 AATCTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 3 0.13
28 7 0.30
29 13 0.57
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (28 bp):
ATTTAAAATTTATAAAAAATTATGTTTA
Found at i:73689756 original size:25 final size:25
Alignment explanation
Indices: 73689725--73689776 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
73689715 TTGTAAATAG
*
73689725 AAGATTATTCTTATTAA-ATTTTAAT
1 AAGATTATTCTTA-AAATATTTTAAT
*
73689750 AAGATTATTGTTAAAATATTTTAAT
1 AAGATTATTCTTAAAATATTTTAAT
73689775 AA
1 AA
73689777 AAATAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (25 bp):
AAGATTATTCTTAAAATATTTTAAT
Found at i:73689855 original size:12 final size:11
Alignment explanation
Indices: 73689828--73689911 Score: 63
Period size: 12 Copynumber: 7.6 Consensus size: 11
73689818 TATTAAATAC
73689828 AATTTAATAA-
1 AATTTAATAAT
73689838 AA--TAATATAT
1 AATTTAATA-AT
73689848 AATTTAATAAT
1 AATTTAATAAT
*
73689859 ATTTTTAAT-AT
1 A-ATTTAATAAT
73689870 AATTATTAATAAT
1 AA-T-TTAATAAT
73689883 -ATTTAATAAT
1 AATTTAATAAT
73689893 AATTTTAAT-AT
1 AA-TTTAATAAT
73689904 AATATTAA
1 AAT-TTAA
73689912 CAATTTATTT
Statistics
Matches: 61, Mismatches: 2, Indels: 21
0.73 0.02 0.25
Matches are distributed among these distances:
8 5 0.08
9 1 0.02
10 13 0.21
11 17 0.28
12 23 0.38
13 2 0.03
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AATTTAATAAT
Found at i:73689872 original size:22 final size:21
Alignment explanation
Indices: 73689844--73689902 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 21
73689834 ATAAAATAAT
73689844 ATATAA-TTTAATAATATTTTTA
1 ATATAATTTTAATAATA--TTTA
73689866 ATATAATTATTAATAATATTTA
1 ATATAATT-TTAATAATATTTA
73689888 ATAATAATTTTAATA
1 AT-ATAATTTTAATA
73689903 TAATATTAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
22 18 0.53
23 7 0.21
24 9 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATAATTTTAATAATATTTA
Found at i:73689892 original size:34 final size:35
Alignment explanation
Indices: 73689840--73689911 Score: 112
Period size: 34 Copynumber: 2.1 Consensus size: 35
73689830 TTTAATAAAA
*
73689840 TAATATATAATTTAATAATATTTTTAATATAATTAT
1 TAATATATAATTTAATAATAATTTTAATATAA-TAT
73689876 TAATA-AT-ATTTAATAATAATTTTAATATAATAT
1 TAATATATAATTTAATAATAATTTTAATATAATAT
73689909 TAA
1 TAA
73689912 CAATTTATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
33 6 0.17
34 22 0.63
35 2 0.06
36 5 0.14
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (35 bp):
TAATATATAATTTAATAATAATTTTAATATAATAT
Found at i:73689905 original size:24 final size:24
Alignment explanation
Indices: 73689840--73689909 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 24
73689830 TTTAATAAAA
*
73689840 TAATATATAA-TTTAATA-ATATTTT
1 TAATA-ATAATTTTAATATA-ATATT
73689864 TAAT-ATAATTATT-A-ATAATATT
1 TAATAATAATT-TTAATATAATATT
73689886 TAATAATAATTTTAATATAATATT
1 TAATAATAATTTTAATATAATATT
73689910 AACAATTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
22 15 0.38
23 10 0.26
24 14 0.36
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TAATAATAATTTTAATATAATATT
Found at i:73698117 original size:13 final size:13
Alignment explanation
Indices: 73698091--73698189 Score: 62
Period size: 13 Copynumber: 7.5 Consensus size: 13
73698081 ATCGGGTGAA
* *
73698091 AAATGAATAAATG
1 AAATGATTATATG
73698104 AAATGATTATATG
1 AAATGATTATATG
*
73698117 -AATCGGTTATATGG
1 AAAT-GATTATAT-G
*
73698131 AAGTAGA-TATATG
1 AAAT-GATTATATG
*
73698144 AAATGGTTATATG
1 AAATGATTATATG
*
73698157 -AATCAGTTATATG
1 AAATGA-TTATATG
73698170 AAAATAGA-TATATG
1 -AAAT-GATTATATG
73698184 AAATGA
1 AAATGA
73698190 AACATTGGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 17
0.71 0.12 0.18
Matches are distributed among these distances:
12 9 0.13
13 39 0.58
14 12 0.18
15 6 0.09
16 1 0.01
ACGTcount: A:0.46, C:0.02, G:0.19, T:0.32
Consensus pattern (13 bp):
AAATGATTATATG
Found at i:73698145 original size:40 final size:40
Alignment explanation
Indices: 73698101--73698189 Score: 142
Period size: 40 Copynumber: 2.2 Consensus size: 40
73698091 AAATGAATAA
* * *
73698101 ATGAAATGATTATATGAATCGGTTATATGGAAGTAGATAT
1 ATGAAATGATTATATGAATCAGTTATATGAAAATAGATAT
*
73698141 ATGAAATGGTTATATGAATCAGTTATATGAAAATAGATAT
1 ATGAAATGATTATATGAATCAGTTATATGAAAATAGATAT
73698181 ATGAAATGA
1 ATGAAATGA
73698190 AACATTGGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.44, C:0.02, G:0.20, T:0.34
Consensus pattern (40 bp):
ATGAAATGATTATATGAATCAGTTATATGAAAATAGATAT
Found at i:73698174 original size:27 final size:26
Alignment explanation
Indices: 73698111--73698172 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 26
73698101 ATGAAATGAT
73698111 TATATG-AATCGGTTATATGGAAGTAGA
1 TATATGAAAT-GGTTATAT-GAAGTAGA
*
73698138 TATATGAAATGGTTATATGAA-TCAGT
1 TATATGAAATGGTTATATGAAGT-AGA
73698164 TATATGAAA
1 TATATGAAA
73698173 ATAGATATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
25 1 0.03
26 14 0.44
27 14 0.44
28 3 0.09
ACGTcount: A:0.40, C:0.03, G:0.21, T:0.35
Consensus pattern (26 bp):
TATATGAAATGGTTATATGAAGTAGA
Found at i:73699137 original size:30 final size:30
Alignment explanation
Indices: 73699111--73699173 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
73699101 CACATGATCG
73699111 TGTGTCACACACGATTGTTTGGCATGACCA
1 TGTGTCACACACGATTGTTTGGCATGACCA
* *
73699141 TGTGTCACACACGGTTGTTTGGCACGACCA
1 TGTGTCACACACGATTGTTTGGCATGACCA
73699171 TGT
1 TGT
73699174 AGCTTATTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (30 bp):
TGTGTCACACACGATTGTTTGGCATGACCA
Found at i:73700029 original size:15 final size:16
Alignment explanation
Indices: 73700019--73700056 Score: 62
Period size: 14 Copynumber: 2.5 Consensus size: 16
73700009 AAAGTAAGTG
73700019 ATGTTAAAGTAGAGAT
1 ATGTTAAAGTAGAGAT
73700035 ATGTTAAA-TAGA-AT
1 ATGTTAAAGTAGAGAT
73700049 ATGTTAAA
1 ATGTTAAA
73700057 AGAAGGCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 10 0.45
15 4 0.18
16 8 0.36
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.34
Consensus pattern (16 bp):
ATGTTAAAGTAGAGAT
Found at i:73700843 original size:11 final size:11
Alignment explanation
Indices: 73700827--73700858 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
73700817 TAATAAAAAA
73700827 TTTTATTTTTT
1 TTTTATTTTTT
73700838 TTTTATTTTTT
1 TTTTATTTTTT
*
73700849 TTTAATTTTT
1 TTTTATTTTT
73700859 CACAATTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTATTTTTT
Found at i:73714026 original size:15 final size:15
Alignment explanation
Indices: 73714006--73714035 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
73713996 AAGATGATTG
73714006 CCTTAACATTTTTAA
1 CCTTAACATTTTTAA
73714021 CCTTAACATTTTTAA
1 CCTTAACATTTTTAA
73714036 ACATTACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (15 bp):
CCTTAACATTTTTAA
Found at i:73714044 original size:15 final size:16
Alignment explanation
Indices: 73714008--73714050 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
73713998 GATGATTGCC
*
73714008 TTAACATTTTT-AACC
1 TTAACATTTTTAAACA
73714023 TTAACATTTTTAAACA
1 TTAACATTTTTAAACA
73714039 TT-ACATTGTTTA
1 TTAACATT-TTTA
73714051 TTCATTTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (16 bp):
TTAACATTTTTAAACA
Found at i:73716370 original size:74 final size:74
Alignment explanation
Indices: 73716222--73716418 Score: 216
Period size: 74 Copynumber: 2.7 Consensus size: 74
73716212 AGACCCAAAA
* * * * * *
73716222 AAATGATATTATTGTAAGAGAGCCACAAACCCTGAATACATTAATTTTCGTAAACCGTAATTCAA
1 AAATGACATTATTGTGAGACAACCACAAACCCTGAAAACATTAATTTTCATAAACCGTAATTCAA
73716287 ACATGAAAG
66 ACATGAAAG
* * ** * * **
73716296 AAATTACATTGTTG-GTAGACAACCATGAACCCTAAAAACATTAATTTTCATATATTGTAATTCA
1 AAATGACATTATTGTG-AGACAACCACAAACCCTGAAAACATTAATTTTCATAAACCGTAATTCA
*
73716360 GACATGAAAG
65 AACATGAAAG
* * *
73716370 AGATGATATTATTGTGAGACAACCACAAACCCTGAAAACATTAGTTTTC
1 AAATGACATTATTGTGAGACAACCACAAACCCTGAAAACATTAATTTTC
73716419 GTGGACTTTA
Statistics
Matches: 98, Mismatches: 23, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
74 97 0.99
75 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (74 bp):
AAATGACATTATTGTGAGACAACCACAAACCCTGAAAACATTAATTTTCATAAACCGTAATTCAA
ACATGAAAG
Found at i:73716476 original size:63 final size:63
Alignment explanation
Indices: 73716377--73716502 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
73716367 AAGAGATGAT
* * *
73716377 ATTATTGTGAGACAACCACAAACCCTGAAAACATTAGTTTTCGTGGACTTTAAAATGAATATA
1 ATTATTGTGAAACAACCACAAACCCTGAAAACATTAGTTTCCATGGACTTTAAAATGAATATA
*
73716440 ATTATTGTGAAACAATCACAAACCCTGAAAACATTAGTTTCCATGGACTTTAAAATGAATATA
1 ATTATTGTGAAACAACCACAAACCCTGAAAACATTAGTTTCCATGGACTTTAAAATGAATATA
73716503 GAGGAATGGC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (63 bp):
ATTATTGTGAAACAACCACAAACCCTGAAAACATTAGTTTCCATGGACTTTAAAATGAATATA
Found at i:73719516 original size:30 final size:30
Alignment explanation
Indices: 73719450--73719516 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 30
73719440 GTTATTGCTT
73719450 TAATATAAATATATATAATTATTATTTAACA
1 TAATAT-AATATATATAATTATTATTTAACA
*
73719481 T-ATATAATA-ATATAA-TATTTTTTATAACA
1 TAATATAATATATATAATTA-TTATT-TAACA
73719510 TAATATA
1 TAATATA
73719517 TTTGAGTCGG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
27 2 0.06
28 10 0.31
29 10 0.31
30 9 0.28
31 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (30 bp):
TAATATAATATATATAATTATTATTTAACA
Found at i:73722911 original size:99 final size:99
Alignment explanation
Indices: 73722740--73722940 Score: 339
Period size: 99 Copynumber: 2.0 Consensus size: 99
73722730 CTCAAATATA
* *
73722740 AATTATATTATTTTAAATTTTAAATTTATATTTCCCAAGCCCAAACCCATTTAAGCTTTTACTTT
1 AATTATATTATTTTAAAATTTAAATTTATATTCCCCAAGCCCAAACCCATTTAAGCTTTTACTTT
*
73722805 ACCTCATTTCCCCCCAAAGCCTGTTTGCCTCACC
66 ACCTCATTTCCCCCCAAAGCCTGTTTGCCCCACC
* * * *
73722839 AATTATATTATTTTAAAATTTAAATTTATATTCCCCAAGCTCAAACGCTTTTAGGCTTTTACTTT
1 AATTATATTATTTTAAAATTTAAATTTATATTCCCCAAGCCCAAACCCATTTAAGCTTTTACTTT
73722904 ACCTCATTTCCCCCCAAAGCCTGTTTGCCCCACC
66 ACCTCATTTCCCCCCAAAGCCTGTTTGCCCCACC
73722938 AAT
1 AAT
73722941 CCACTTTCCC
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 95 1.00
ACGTcount: A:0.28, C:0.27, G:0.06, T:0.39
Consensus pattern (99 bp):
AATTATATTATTTTAAAATTTAAATTTATATTCCCCAAGCCCAAACCCATTTAAGCTTTTACTTT
ACCTCATTTCCCCCCAAAGCCTGTTTGCCCCACC
Found at i:73723070 original size:38 final size:39
Alignment explanation
Indices: 73722997--73723086 Score: 119
Period size: 38 Copynumber: 2.3 Consensus size: 39
73722987 TCATCCATTC
* *
73722997 AATTCAAACCCCAAATCTATTCTTTTTCTTCAAAAAACCTTA
1 AATT-AAACCCCAAATCTA-T-TTTTTCTTAAAAAAACCCTA
*
73723039 AATTAAACCCCAAATCTA-TTTTTCTTAAAAAATCCCTA
1 AATTAAACCCCAAATCTATTTTTTCTTAAAAAAACCCTA
73723077 AATTAAACCC
1 AATTAAACCC
73723087 TCTATTTATC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
38 27 0.60
41 14 0.31
42 4 0.09
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.33
Consensus pattern (39 bp):
AATTAAACCCCAAATCTATTTTTTCTTAAAAAAACCCTA
Found at i:73725435 original size:56 final size:56
Alignment explanation
Indices: 73725349--73725462 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
73725339 CGAATCAGGT
* *
73725349 ATGTTTCAAGCCCTAGCTAAACAACATGCTTTCGAATTAGTATGGTTGATTGATTA
1 ATGTTTCAAGCCCTAGCTAAACAACATGCTTCCGAATTAGTATGGTTGACTGATTA
73725405 ATGTTTCAAGCCCTAGCTAAACAACATGCTTCCGAATTAGTATGGTTGACTGATTA
1 ATGTTTCAAGCCCTAGCTAAACAACATGCTTCCGAATTAGTATGGTTGACTGATTA
73725461 AT
1 AT
73725463 TGTATGGTTG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (56 bp):
ATGTTTCAAGCCCTAGCTAAACAACATGCTTCCGAATTAGTATGGTTGACTGATTA
Found at i:73726874 original size:40 final size:39
Alignment explanation
Indices: 73726782--73726876 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 39
73726772 ACCAACTTTG
* *
73726782 TCCAACCCTACACACC-ATGTAGGGATAAAATCGACTCA
1 TCCAACCCTACACACCAATATAGGGATAAAATCGACCCA
* * *
73726820 -CTCATCCCTGCACACCAAATATGGGGATAAAATCGACCCA
1 TC-CAACCCTACACACC-AATATAGGGATAAAATCGACCCA
*
73726860 TCCAACCATACACACCA
1 TCCAACCCTACACACCA
73726877 TAAAGTATCG
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
37 1 0.02
38 12 0.27
39 1 0.02
40 30 0.67
41 1 0.02
ACGTcount: A:0.37, C:0.35, G:0.12, T:0.17
Consensus pattern (39 bp):
TCCAACCCTACACACCAATATAGGGATAAAATCGACCCA
Found at i:73736341 original size:78 final size:81
Alignment explanation
Indices: 73736190--73736349 Score: 229
Period size: 78 Copynumber: 2.0 Consensus size: 81
73736180 TGTATTTTAT
* * *
73736190 ACTTTTGCTTATGTTTTTTTATTTATTATAATCTTGTTATGTTGTTGTTGTTGTTTACTTAGACT
1 ACTTTTACTTATGTTTTTTTATTTATTATAATCCTGTTATGTTGTTATTGTTGTTTACTTAGACT
* *
73736255 CGTGTTGTTTACTTGG
66 CATATTGTTTACTTGG
*
73736271 ACTTTTACTTATGTTTTTATTA-TTATTATAATCCTG-T-TG-TGTTATTGTTGTTTACTTGGAC
1 ACTTTTACTTATGTTTTT-TTATTTATTATAATCCTGTTATGTTGTTATTGTTGTTTACTTAGAC
73736332 TCATATTGTTTACTTGG
65 TCATATTGTTTACTTGG
73736349 A
1 A
73736350 TTGATGTTAT
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
78 36 0.50
79 2 0.03
80 1 0.01
81 30 0.42
82 3 0.04
ACGTcount: A:0.17, C:0.09, G:0.16, T:0.57
Consensus pattern (81 bp):
ACTTTTACTTATGTTTTTTTATTTATTATAATCCTGTTATGTTGTTATTGTTGTTTACTTAGACT
CATATTGTTTACTTGG
Found at i:73741173 original size:27 final size:27
Alignment explanation
Indices: 73741117--73741192 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
73741107 GTCATACATA
*
73741117 TCATAGGGGTAT-ATTGTCATTTTACC
1 TCATAGGGGTATAATAGTCATTTTACC
*
73741143 TCATAGGGGTATAATAGTTATTTTACC
1 TCATAGGGGTATAATAGTCATTTTACC
* *
73741170 TCATAGAGGTATAACAGTCATTT
1 TCATAGGGGTATAATAGTCATTT
73741193 CATCAAATCG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 12 0.27
27 32 0.73
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (27 bp):
TCATAGGGGTATAATAGTCATTTTACC
Found at i:73743756 original size:46 final size:45
Alignment explanation
Indices: 73743703--73743869 Score: 133
Period size: 46 Copynumber: 3.6 Consensus size: 45
73743693 CTATTTGTGT
* *
73743703 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCACATT-G-TAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTAGACAAGA
* * *
73743749 GCTAGTGTAAGACCACGTCAGGGACATGGCATCGGCATTGAGACAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATT-AGACAAGA
* * * * * *
73743797 GCTAGTGTAAGACATGTCTGGGCCATGCATTGCCCTT-GAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTAGACAAG--A
*
73743843 GCCAGTGTAAGACATGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
73743870 TATTGGCTAC
Statistics
Matches: 99, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 46 0.46
47 24 0.24
48 21 0.21
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTAGACAAGA
Found at i:73743910 original size:45 final size:45
Alignment explanation
Indices: 73743800--73743916 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 45
73743790 GACAAGAGCT
* *
73743800 AGTGTAAGACATGTCTGGGCCATGCATTGCCCTTGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGCCCTCGAGATGT-AGCC
* * *
73743846 AGTGTAAGACATGTCTGGGACATGTATTG-GCTACGAGATGT-GTC
1 AGTGTAAGACATGTCTGGGACATGCATTGCCCT-CGAGATGTAGCC
73743890 AGTGTAAGACCATGTCTGGGACATGCA
1 AGTGTAAGA-CATGTCTGGGACATGCA
73743917 ATCGGCACTA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
44 11 0.17
45 18 0.29
46 34 0.54
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATTGCCCTCGAGATGTAGCC
Found at i:73744056 original size:47 final size:48
Alignment explanation
Indices: 73743942--73744067 Score: 148
Period size: 47 Copynumber: 2.6 Consensus size: 48
73743932 TGAGAGATAA
* *
73743942 TGTAAGACCATGTCTGGGACATGGCATCGGTCTCGATTTCAATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGACTCGA-TTCAATAGCCAG
* * **
73743991 TGTAAGACCATGGCTGGGACATGGCATC-GACTTGA-TGGATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGACTCGATTCAAT-AGCCAG
* *
73744038 TGTAAGACCATGTTTGGGACATGGCGTCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
73744068 TATTATACCC
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
46 3 0.05
47 30 0.45
48 6 0.09
49 27 0.41
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGACTCGATTCAATAGCCAG
Found at i:73745899 original size:35 final size:35
Alignment explanation
Indices: 73745823--73745899 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
73745813 TTATAATCAC
* * * *
73745823 TGTCATATGGTATGAAAACATGCCCATATATTTAT
1 TGTCACATGGAATGAAAACATACCCATATATCTAT
*
73745858 TGTCACATGGAATGAATAACATACCCATATATCTCT
1 TGTCACATGGAATGAA-AACATACCCATATATCTAT
73745894 T-TCACA
1 TGTCACA
73745900 ACAGTCATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
35 19 0.53
36 17 0.47
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (35 bp):
TGTCACATGGAATGAAAACATACCCATATATCTAT
Found at i:73749660 original size:46 final size:46
Alignment explanation
Indices: 73749604--73749779 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
73749594 TATTTGGGCA
73749604 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * *
73749650 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATATAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GAT-GCGA-ACG
*
73749697 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
73749743 CCCGAGCTCATTAAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73749780 GTGGGTTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
44 1 0.01
45 4 0.04
46 63 0.60
47 31 0.30
48 5 0.05
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:73749760 original size:93 final size:93
Alignment explanation
Indices: 73749600--73749772 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
73749590 CGGATATTTG
* * *
73749600 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAG
73749665 TTGAGTCCGAGTTCGTGAGATATAACTA
66 TTGAGTCCGAGTTCGTGAGATATAACTA
* *
73749693 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACGCCCGAGCTCATTAAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAG
73749758 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
73749773 CTTATGGGTG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAG
TTGAGTCCGAGTTCGTGAGATATAACTA
Found at i:73751942 original size:12 final size:13
Alignment explanation
Indices: 73751925--73751954 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
73751915 TGTTGATGCA
73751925 TAATTAAAAT-AT
1 TAATTAAAATAAT
73751937 TAATTAAAATAAT
1 TAATTAAAATAAT
73751950 TAATT
1 TAATT
73751955 TAATAACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TAATTAAAATAAT
Found at i:73757512 original size:34 final size:34
Alignment explanation
Indices: 73757460--73757557 Score: 114
Period size: 34 Copynumber: 2.9 Consensus size: 34
73757450 TATGCATTTT
*
73757460 TGATACTG-TACTGAATTGGGGTAAGGCCCACAA
1 TGATACTGCTACTGAATTGGGCTAAGGCCCACAA
* *
73757493 TGATACTGCTACTGTATTGGGCTAAGGCCCACAC
1 TGATACTGCTACTGAATTGGGCTAAGGCCCACAA
73757527 TGATA-TCGCTACTG-ATATGGGCTTAA-GCCCA
1 TGATACT-GCTACTGAAT-TGGGC-TAAGGCCCA
73757558 GACTATTCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
33 11 0.19
34 44 0.76
35 3 0.05
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (34 bp):
TGATACTGCTACTGAATTGGGCTAAGGCCCACAA
Found at i:73762446 original size:42 final size:42
Alignment explanation
Indices: 73762400--73762509 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 42
73762390 TCGCAGACAG
* *
73762400 GGTCTTACACAAAGTCACATA-CGATGCCGATATCCCAAACAT
1 GGTCTTACACAAA-TCACATATCGATGCCAATATCCCAAAAAT
* * *
73762442 GGTCTTACACGTAAATCTCAAATCGATGCCAATGTCCCAAAAAT
1 GGTCTTACAC--AAATCACATATCGATGCCAATATCCCAAAAAT
*
73762486 GTTCTTACACAAAATCACATATCG
1 GGTCTTACAC-AAATCACATATCG
73762510 GAATCCTATG
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 10 0.18
43 16 0.29
44 30 0.54
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (42 bp):
GGTCTTACACAAATCACATATCGATGCCAATATCCCAAAAAT
Found at i:73762504 original size:86 final size:85
Alignment explanation
Indices: 73762332--73762506 Score: 199
Period size: 86 Copynumber: 2.0 Consensus size: 85
73762322 TCAGAAAGCT
* * * * * * *
73762332 CATACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCGCAGA
1 CATACAATGCCAATATCCCAAACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAAA
* *
73762397 CAGGGTCTTACACAAAGTCA
66 AAGGGTCTTACACAAAATCA
* * *
73762417 CATACGATGCCGATATCCCAAACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAATGTCCCA
1 CATACAATGCCAATATCCCAAACATGGTCTTACACGT-AATC-AAATATCGATGCCAATGTCCCA
* *
73762481 AAAATGTTCTTACACAAAATCA
64 AAAAGGGTCTTACACAAAATCA
73762503 CATA
1 CATA
73762507 TCGGAATCCT
Statistics
Matches: 74, Mismatches: 14, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
85 31 0.42
86 41 0.55
87 2 0.03
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (85 bp):
CATACAATGCCAATATCCCAAACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAAA
AAGGGTCTTACACAAAATCA
Found at i:73766825 original size:65 final size:65
Alignment explanation
Indices: 73766752--73766879 Score: 202
Period size: 65 Copynumber: 2.0 Consensus size: 65
73766742 CTTATGCATC
* ** *
73766752 AGATAATAATAACATGGCATGCAGTAAATAGTAACTGTCAAACATGCATTCAGGTCAAGCTTATT
1 AGATAATAATAACATGGCATACAGTAAATAGTAACAATCAAACATGCATTCAGGTCAACCTTATT
* *
73766817 AGATAATAATAACATGGCATATAGTAAATAGTAGCAATCAAACATGCATTCAGGTCAACCTTA
1 AGATAATAATAACATGGCATACAGTAAATAGTAACAATCAAACATGCATTCAGGTCAACCTTA
73766880 ACCCTAGGGG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.27
Consensus pattern (65 bp):
AGATAATAATAACATGGCATACAGTAAATAGTAACAATCAAACATGCATTCAGGTCAACCTTATT
Found at i:73766938 original size:27 final size:26
Alignment explanation
Indices: 73766882--73766938 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
73766872 CAACCTTAAC
* * *
73766882 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
**
73766908 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
73766935 CCTA
1 CCTA
73766939 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:73776666 original size:86 final size:86
Alignment explanation
Indices: 73776520--73776679 Score: 232
Period size: 86 Copynumber: 1.9 Consensus size: 86
73776510 ATATCATATA
* * * *
73776520 ATGCCAACGTCCCAGACATGGTCTTACTTGTAATCATATGTCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACTCGAAATCACATATCGATGCCACTGTCCCAGACAGGGT
73776585 CTTACACGAATCACAATTACG
66 CTTACACGAATCACAATTACG
* * * *
73776606 ATGCCAATGTCCTAGACATGGTCTTACTCGAAATCACATATCGATGCCAAC-GTCCTAGACATGG
1 ATGCCAACGTCCCAGACATGGTCTTACTCGAAATCACATATCGATGCC-ACTGTCCCAGACAGGG
73776670 TCTTACACGA
65 TCTTACACGA
73776680 GAACACATAT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
86 63 0.97
87 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (86 bp):
ATGCCAACGTCCCAGACATGGTCTTACTCGAAATCACATATCGATGCCACTGTCCCAGACAGGGT
CTTACACGAATCACAATTACG
Found at i:73776687 original size:43 final size:42
Alignment explanation
Indices: 73776520--73776690 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 42
73776510 ATATCATATA
** * * *
73776520 ATGCCAACGTCCCAGACATGGTCTTACTTGTAATCATATGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAACACATATCG
* *
73776563 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAATCACA-ATTACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAACACATA-T-CG
* * *
73776606 ATGCCAATGTCCTAGACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAA-CACATATCG
*
73776649 ATGCCAACGTCCTAGACATGGTCTTACACGAGAACACATATC
1 ATGCCAACGTCCCAGACATGGTCTTACACGA-AACACATATC
73776691 AGAAATCATA
Statistics
Matches: 109, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
42 9 0.08
43 91 0.83
44 8 0.07
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAACACATATCG
Found at i:73777995 original size:28 final size:28
Alignment explanation
Indices: 73777955--73778010 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
73777945 CGTCCGCGAA
73777955 AACCTTACCAGAAAGTAGATTAAGGATT
1 AACCTTACCAGAAAGTAGATTAAGGATT
73777983 AACCTTACCAGAAAGTAGATTAAGGATT
1 AACCTTACCAGAAAGTAGATTAAGGATT
73778011 TTCTTCCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (28 bp):
AACCTTACCAGAAAGTAGATTAAGGATT
Found at i:73783733 original size:43 final size:42
Alignment explanation
Indices: 73783566--73783738 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 42
73783556 ATATCATACA
* * * *
73783566 ATGCCAACGTTCC-AGACATGGTCTTACATGTAATCATATGTCG
1 ATGCCAACG-TCCTAGACATGGTCTTACACG-AAACACATATCG
* * * *
73783609 ATGCC-ACTGTCCCAGACAGGGTCTTACATGAATCACAATTAT-G
1 ATGCCAAC-GTCCTAGACATGGTCTTACACGAAACAC-A-TATCG
* *
73783652 ATGCCAATGTCCTAGACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAACGTCCTAGACATGGTCTTACACGAAA-CACATATCG
*
73783695 ATGCCAACGTCCTAGACGTGGTCTTACACGAGAACACATATCG
1 ATGCCAACGTCCTAGACATGGTCTTACACGA-AACACATATCG
73783738 A
1 A
73783739 AAATCCTATG
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
42 13 0.12
43 89 0.81
44 8 0.07
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCTAGACATGGTCTTACACGAAACACATATCG
Found at i:73784882 original size:14 final size:15
Alignment explanation
Indices: 73784865--73784893 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73784855 GCATGAAAAT
73784865 TTCACACAT-ATAAA
1 TTCACACATAATAAA
73784879 TTCACACATAATAAA
1 TTCACACATAATAAA
73784894 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:73788178 original size:27 final size:26
Alignment explanation
Indices: 73788134--73788185 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73788124 CTCGCTGCAA
*
73788134 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
73788161 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
73788186 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:73796324 original size:27 final size:26
Alignment explanation
Indices: 73796276--73796406 Score: 142
Period size: 27 Copynumber: 4.9 Consensus size: 26
73796266 GCGAGGCTGC
* *
73796276 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
73796302 ACAGATATTGTGGCAGAGCCACCAGAT
1 -CAGATATTGTGGCAGAGCCACCAGAT
*
73796329 CAGATAATTGT-GCATAGCCACCAGGA-
1 CAGAT-ATTGTGGCAGAGCCACCA-GAT
73796355 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* *
73796382 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
73796407 GACGCTTCCT
Statistics
Matches: 91, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
25 2 0.02
26 26 0.29
27 60 0.66
28 3 0.03
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:73796351 original size:53 final size:54
Alignment explanation
Indices: 73796302--73796409 Score: 193
Period size: 53 Copynumber: 2.0 Consensus size: 54
73796292 GTCACCAGAT
73796302 ACAGATAT-TGTGGCAGAGCCACCAGATCAGATAATTGT-GCATAGCCACCAGG
1 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGG
*
73796354 ACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCACCAGG
1 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGG
73796408 AC
1 AC
73796410 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
52 8 0.15
53 29 0.55
54 16 0.30
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGG
Found at i:73798677 original size:27 final size:26
Alignment explanation
Indices: 73798639--73798698 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
73798629 CCACATATAT
* *
73798639 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
73798665 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
73798692 ATATCTG
1 ATATCTG
73798699 GCAGCCTCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:73804834 original size:29 final size:29
Alignment explanation
Indices: 73804801--73804861 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
73804791 TAGTGTAGAG
73804801 AAAGAAAATAAGAGTGTTATAAACATGGT
1 AAAGAAAATAAGAGTGTTATAAACATGGT
73804830 AAAGAAAATAAGAGTGTTATAAACATGGT
1 AAAGAAAATAAGAGTGTTATAAACATGGT
73804859 AAA
1 AAA
73804862 TAAACATCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.54, C:0.03, G:0.20, T:0.23
Consensus pattern (29 bp):
AAAGAAAATAAGAGTGTTATAAACATGGT
Found at i:73809858 original size:44 final size:46
Alignment explanation
Indices: 73809801--73809919 Score: 127
Period size: 44 Copynumber: 2.6 Consensus size: 46
73809791 ATACATGCAT
*
73809801 GCTGATACATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-A-
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-CAACTCTGTCAG
* * * * * *
73809845 GCTGATGCGTGTCCTAGACACGTCTTACACTGGCTATCTCTGTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGTC-AG
*
73809892 GCCGATGCATGTCCCAGACATGTCTTAC
1 GCTGATGCATGTCCCAGACATGTCTTAC
73809920 TCTGGCACTC
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
43 5 0.08
44 30 0.50
46 1 0.02
47 24 0.40
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGTCAG
Found at i:73809911 original size:47 final size:45
Alignment explanation
Indices: 73809753--73810015 Score: 178
Period size: 47 Copynumber: 5.6 Consensus size: 45
73809743 GATAAATTGT
*
73809753 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATG-CATGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-C-TGTCA-GC
* * * * *
73809803 TGATACATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-AGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTCAGC
* * * *
73809847 TGATGCGTGTCCTAGACACGTCTTACACTGGCTATCTCTGTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTC-A-GC
* *
73809894 CGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGT--TC
1 CGATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTCAGC
* * * * *
73809940 TGATGCCATGTCCCAGACATGGCCTTACACTGGCTTTCATAATGTGA-C
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTCAGC
*
73809988 CGAAGCATGTCCCAGACATGTCTTACAC
1 CGATGCATGTCCCAGACATGTCTTACAC
73810016 AGGCACACAA
Statistics
Matches: 171, Mismatches: 27, Indels: 34
0.74 0.12 0.15
Matches are distributed among these distances:
43 5 0.03
44 30 0.18
45 3 0.02
46 18 0.11
47 60 0.35
48 27 0.16
49 17 0.10
50 11 0.06
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTCAGC
Found at i:73810021 original size:94 final size:93
Alignment explanation
Indices: 73809754--73810028 Score: 271
Period size: 94 Copynumber: 2.9 Consensus size: 93
73809744 ATAAATTGTC
* *
73809754 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATGCATG-CTGATA-CATGTCCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATA-ATG--TGACCGA-AGCATGTCCCA
73809817 GACATGTCTTACACTA-GCA-CAACTCTTAGCT
62 GACATGTCTTACAC-AGGCACCAACTCTTAGCT
* * * * *
73809848 GATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATC-T-CTGTCGAGGCCGATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGT-GA--CCGAAGCATGTCCCAG
* * * *
73809909 ACATGTCTTACTCTGGCACTCATCTCTGT-TCT
63 ACATGTCTTACACAGGCAC-CAACTCT-TAGCT
* *
73809941 GATGCCATGTCCCAGACATGGCCTTACACTGGCTTTCATAATGTGACCGAAGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGACCGAAGCATGTCCCAGACA
73810006 TGTCTTACACAGGCACACAACTC
66 TGTCTTACACAGGCAC-CAACTC
73810029 ACCCAATGTC
Statistics
Matches: 146, Mismatches: 22, Indels: 26
0.75 0.11 0.13
Matches are distributed among these distances:
87 1 0.01
88 1 0.01
89 2 0.01
91 29 0.20
92 16 0.11
93 23 0.16
94 53 0.36
95 15 0.10
96 3 0.02
97 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGACCGAAGCATGTCCCAGACA
TGTCTTACACAGGCACCAACTCTTAGCT
Found at i:73811436 original size:20 final size:21
Alignment explanation
Indices: 73811413--73811451 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
73811403 TAATTTATAA
73811413 AAAAATTTAA-TAAAAATTTT
1 AAAAATTTAATTAAAAATTTT
*
73811433 AAAATTTTAATTAAAAATT
1 AAAAATTTAATTAAAAATT
73811452 AATAACGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAAATTTAATTAAAAATTTT
Found at i:73811927 original size:19 final size:18
Alignment explanation
Indices: 73811893--73811928 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
73811883 TCGAAAAAAA
73811893 ATTAATTTACTAATATCC
1 ATTAATTTACTAATATCC
*
73811911 ATTAATTATATTAATATC
1 ATTAATT-TACTAATATC
73811929 TTTTGTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTAATTTACTAATATCC
Found at i:73812898 original size:14 final size:14
Alignment explanation
Indices: 73812879--73812905 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73812869 AGTAATATCT
73812879 TGTCTGACTATTCA
1 TGTCTGACTATTCA
73812893 TGTCTGACTATTC
1 TGTCTGACTATTC
73812906 CGTTAACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (14 bp):
TGTCTGACTATTCA
Found at i:73826393 original size:52 final size:52
Alignment explanation
Indices: 73826315--73826417 Score: 206
Period size: 52 Copynumber: 2.0 Consensus size: 52
73826305 GTGGCTTGTC
73826315 GAGGGTTTCTCTCTGATTGCAACTCATTTGACTAAGCTTCTGTGTAAGGGTT
1 GAGGGTTTCTCTCTGATTGCAACTCATTTGACTAAGCTTCTGTGTAAGGGTT
73826367 GAGGGTTTCTCTCTGATTGCAACTCATTTGACTAAGCTTCTGTGTAAGGGT
1 GAGGGTTTCTCTCTGATTGCAACTCATTTGACTAAGCTTCTGTGTAAGGGT
73826418 GTTCCTTTTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.38
Consensus pattern (52 bp):
GAGGGTTTCTCTCTGATTGCAACTCATTTGACTAAGCTTCTGTGTAAGGGTT
Found at i:73843716 original size:40 final size:40
Alignment explanation
Indices: 73843642--73843886 Score: 404
Period size: 40 Copynumber: 6.2 Consensus size: 40
73843632 AACCCAAGTA
* * *
73843642 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
73843681 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
73843721 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
73843761 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
73843801 CCTTCTGGGA-TTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTC-GGGACTTAGCCCGGATATAGTAACTAGCACAAATG
73843841 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
73843881 CCTTCG
1 CCTTCG
73843887 AATTTTAGTC
Statistics
Matches: 196, Mismatches: 7, Indels: 5
0.94 0.03 0.02
Matches are distributed among these distances:
39 17 0.09
40 175 0.89
41 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:73845280 original size:13 final size:13
Alignment explanation
Indices: 73845262--73845287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73845252 ATTTTTATTT
73845262 TTAACATAAAATA
1 TTAACATAAAATA
73845275 TTAACATAAAATA
1 TTAACATAAAATA
73845288 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:73849205 original size:48 final size:48
Alignment explanation
Indices: 73849143--73849311 Score: 202
Period size: 48 Copynumber: 3.6 Consensus size: 48
73849133 ACATTTTGAG
*
73849143 AGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGGTATACC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGGTATACA
* *
73849191 AGCCAGTGTAAGACATGTCTGGGACATGCATCGACATTGA-G---ACGA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGGTATAC-A
** * * *
73849236 GAGATAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTACA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGGTATACA
* *
73849285 AGCTAGTGTAAGACCTGTCTGGGACAT
1 AGCCAGTGTAAGACATGTCTGGGACAT
73849312 AGCGTCAGCT
Statistics
Matches: 104, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
44 2 0.02
46 35 0.34
47 1 0.01
48 63 0.61
49 1 0.01
50 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGGTATACA
Found at i:73849420 original size:49 final size:49
Alignment explanation
Indices: 73849143--73849502 Score: 146
Period size: 48 Copynumber: 7.6 Consensus size: 49
73849133 ACATTTTGAG
* * *
73849143 AGCCAGTGTAAGACATGTCTGGGACATG-CATCGAC-CTCGA-GGTAT-ACC
1 AGCCAGTGTAAGACCTGTCTGGGACATGACATCGACAC-CGATAG-ATGA-A
* ** * *
73849191 AGCCAGTGTAAGACATGTCTGGGACATG-CATCGACATTG--AGACGAG
1 AGCCAGTGTAAGACCTGTCTGGGACATGACATCGACACCGATAGATGAA
** * *
73849237 AGATAGTGTAAGACATGTCTGGGACATG-CATCGGC-CTCG--AGATGTACA
1 AGCCAGTGTAAGACCTGTCTGGGACATGACATCGACAC-CGATAGATG-A-A
* * * * * * **
73849285 AGCTAGTGTAAGACCTGTCTGGGACAT---AGCGTCA--GCTTGTTGTG
1 AGCCAGTGTAAGACCTGTCTGGGACATGACATCGACACCGATAGATGAA
* * * * *
73849329 TGTCAGTGTAAGACCTGTCTGGGATATGGCATCGACACCGATAGATGAG
1 AGCCAGTGTAAGACCTGTCTGGGACATGACATCGACACCGATAGATGAA
* * * * *
73849378 TGCCAGTGTAAGACCTGTTTGGGACATGACATCAGGC-TCGATATATGAA
1 AGCCAGTGTAAGACCTGTCTGGGACATGACATC-GACACCGATAGATGAA
* * * * * *** **
73849427 AGTCAGTGTAAGAGCTGTCTAGGACATGGCATTGACTTTGAT-G-TGTT
1 AGCCAGTGTAAGACCTGTCTGGGACATGACATCGACACCGATAGATGAA
*
73849474 AGCCAGTGTAAGACCATGTCTAGGACATG
1 AGCCAGTGTAAGACC-TGTCTGGGACATG
73849503 GCATTGGCAT
Statistics
Matches: 244, Mismatches: 52, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
44 24 0.10
46 45 0.18
47 23 0.09
48 76 0.31
49 74 0.30
50 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
AGCCAGTGTAAGACCTGTCTGGGACATGACATCGACACCGATAGATGAA
Found at i:73850959 original size:15 final size:15
Alignment explanation
Indices: 73850939--73850971 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
73850929 GTGTGTTTTA
73850939 AATTTCTAGATTAAG
1 AATTTCTAGATTAAG
73850954 AATTTCTAGATTAAG
1 AATTTCTAGATTAAG
73850969 AAT
1 AAT
73850972 GAAAAGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (15 bp):
AATTTCTAGATTAAG
Found at i:73853627 original size:28 final size:27
Alignment explanation
Indices: 73853579--73853631 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 27
73853569 TTGTTTAACT
73853579 AACATCAAATATTCATAATATATCATTA
1 AACATCAAATATTCATAATAT-TCATTA
73853607 AACATCAAA-ATGCTCAT-ATATTCAT
1 AACATCAAATAT--TCATAATATTCAT
73853632 CAATGGTAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
27 6 0.26
28 13 0.57
29 4 0.17
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.34
Consensus pattern (27 bp):
AACATCAAATATTCATAATATTCATTA
Found at i:73854638 original size:2 final size:2
Alignment explanation
Indices: 73854631--73854659 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
73854621 CTGTTAAATG
73854631 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73854660 TAAATAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73855029 original size:37 final size:37
Alignment explanation
Indices: 73854979--73855056 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
73854969 ATTAGATATA
* **
73854979 TTGTATTAAAAATATGTTTCAAATTTATGAAATTTAT
1 TTGTATGAAAAATATGACTCAAATTTATGAAATTTAT
*
73855016 TTGTATGAAAAATATGACTCAAATTTATTAAATTTAT
1 TTGTATGAAAAATATGACTCAAATTTATGAAATTTAT
73855053 TTGT
1 TTGT
73855057 CTATGATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (37 bp):
TTGTATGAAAAATATGACTCAAATTTATGAAATTTAT
Found at i:73855790 original size:21 final size:21
Alignment explanation
Indices: 73855765--73855819 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
73855755 TATGTTTAAA
73855765 CAATTAATTACATTATTTTTT
1 CAATTAATTACATTATTTTTT
* *
73855786 CAATTTATTA-ATGATTTTTT
1 CAATTAATTACATTATTTTTT
* *
73855806 AAATAAATT-CATTA
1 CAATTAATTACATTA
73855820 AAAATTTTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (21 bp):
CAATTAATTACATTATTTTTT
Found at i:73863866 original size:13 final size:13
Alignment explanation
Indices: 73863839--73863872 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
73863829 TTTAATTTAG
73863839 TTTAATTTGATTT
1 TTTAATTTGATTT
73863852 TTTATATTTGA-TT
1 TTTA-ATTTGATTT
73863865 TTTAATTT
1 TTTAATTT
73863873 AAAAGTGGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 10 0.50
14 6 0.30
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (13 bp):
TTTAATTTGATTT
Found at i:73864440 original size:15 final size:16
Alignment explanation
Indices: 73864420--73864454 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
73864410 TTACAAATCT
73864420 AAATA-TCAAATGAGA
1 AAATAGTCAAATGAGA
73864435 AAATATGTCAAATGAGA
1 AAATA-GTCAAATGAGA
73864452 AAA
1 AAA
73864455 ATAGAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
17 13 0.72
ACGTcount: A:0.60, C:0.06, G:0.14, T:0.20
Consensus pattern (16 bp):
AAATAGTCAAATGAGA
Found at i:73867643 original size:14 final size:14
Alignment explanation
Indices: 73867613--73867657 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
73867603 AGGCTCCATT
*
73867613 TGTTTGCCAGTAAAA
1 TGTTTTCCAG-AAAA
73867628 TGTTTTCCAGAAAA
1 TGTTTTCCAGAAAA
* *
73867642 TGATTTCTAGAAAA
1 TGTTTTCCAGAAAA
73867656 TG
1 TG
73867658 ATTTACTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 18 0.67
15 9 0.33
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (14 bp):
TGTTTTCCAGAAAA
Found at i:73867658 original size:14 final size:14
Alignment explanation
Indices: 73867619--73867661 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
73867609 CATTTGTTTG
*
73867619 CCAGTAAAATGTTTT
1 CCAG-AAAATGATTT
73867634 CCAGAAAATGATTT
1 CCAGAAAATGATTT
*
73867648 CTAGAAAATGATTT
1 CCAGAAAATGATTT
73867662 ACTTTTTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 22 0.85
15 4 0.15
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (14 bp):
CCAGAAAATGATTT
Found at i:73871444 original size:48 final size:48
Alignment explanation
Indices: 73871382--73871489 Score: 144
Period size: 48 Copynumber: 2.2 Consensus size: 48
73871372 ATATCTAGAT
* * ** *
73871382 ATGGTCTTATACTGGCACACATATCGATGCTGATGCCATGTCCCAAAC
1 ATGGTCTTACACTGGCACACATATCAACACAGATGCCATGTCCCAAAC
* **
73871430 ATGGTCTTACACTGGCTCTTATATCAACACAGATGCCATGTCCCAAAC
1 ATGGTCTTACACTGGCACACATATCAACACAGATGCCATGTCCCAAAC
73871478 ATGGTCTTACAC
1 ATGGTCTTACAC
73871490 AGGATCTCAT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACACTGGCACACATATCAACACAGATGCCATGTCCCAAAC
Found at i:73876316 original size:37 final size:37
Alignment explanation
Indices: 73876266--73876344 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
73876256 TTATTACGAA
* * *
73876266 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
73876303 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
73876340 GTCTT
1 GTCTT
73876345 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:73876539 original size:49 final size:47
Alignment explanation
Indices: 73876462--73876570 Score: 182
Period size: 49 Copynumber: 2.3 Consensus size: 47
73876452 GCCCTTCGGG
73876462 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATAT--AC
*
73876512 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
73876559 ACTTTCACATTC
1 ACTTTCACATTC
73876571 TCAAAGTAAG
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
47 14 0.24
49 40 0.69
50 4 0.07
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
Found at i:73879521 original size:19 final size:20
Alignment explanation
Indices: 73879484--73879521 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
73879474 CATAACAACG
* *
73879484 ATCACAAAAAGATAGAAATC
1 ATCACAAAAAGAGAAAAATC
73879504 ATCA-AAAAAGAGAAAAAT
1 ATCACAAAAAGAGAAAAAT
73879522 ACATACCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.66, C:0.11, G:0.11, T:0.13
Consensus pattern (20 bp):
ATCACAAAAAGAGAAAAATC
Found at i:73889881 original size:21 final size:21
Alignment explanation
Indices: 73889840--73889881 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73889830 TCCCCCACCT
* *
73889840 CCCCCGATTCCTCAACTTGTA
1 CCCCCGATGCCTCAACGTGTA
*
73889861 CCCCCGATGCCTCAAGGTGTA
1 CCCCCGATGCCTCAACGTGTA
73889882 GATCTGATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.40, G:0.17, T:0.24
Consensus pattern (21 bp):
CCCCCGATGCCTCAACGTGTA
Found at i:73895157 original size:30 final size:30
Alignment explanation
Indices: 73895121--73895180 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
73895111 TTCCCGAGCC
*
73895121 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
73895151 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
73895181 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:73897482 original size:18 final size:18
Alignment explanation
Indices: 73897459--73897495 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
73897449 AAGCAAAGAA
73897459 AGGCATAAAATTTCAGGC
1 AGGCATAAAATTTCAGGC
*
73897477 AGGCATAAAATTTTAGGC
1 AGGCATAAAATTTCAGGC
73897495 A
1 A
73897496 TAAAATCGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.24
Consensus pattern (18 bp):
AGGCATAAAATTTCAGGC
Found at i:73906494 original size:13 final size:13
Alignment explanation
Indices: 73906476--73906500 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73906466 GAGTAATCAC
73906476 ACACGGGCGTGTT
1 ACACGGGCGTGTT
73906489 ACACGGGCGTGT
1 ACACGGGCGTGT
73906501 CCCTGCCGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:73910065 original size:51 final size:50
Alignment explanation
Indices: 73909999--73910182 Score: 174
Period size: 50 Copynumber: 3.7 Consensus size: 50
73909989 TGAGGTCGCA
* *
73909999 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCG-AAACTGTGGTCACG
* *** *** * *
73910050 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAACTGTGGTCACG
* * * * * *
73910100 TGTGTAGTACTAAGTGCAGGTTATTACGTGTA-CCG-GACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAACTG-TGGTCACG
*
73910149 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
73910183 AGATAGCTTC
Statistics
Matches: 105, Mismatches: 26, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
48 2 0.02
49 33 0.31
50 39 0.37
51 31 0.30
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAACTGTGGTCACG
Found at i:73910130 original size:26 final size:26
Alignment explanation
Indices: 73910051--73910131 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
73910041 GTGATCACGT
* *
73910051 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAGTGCAGGTTATTAC
* * * *
73910077 GTGTATTA-GATGGTG-AGGTCATGT--
1 GTGTAGTACTA-AGTGCAGGTTAT-TAC
73910101 GTGTAGTACTAAGTGCAGGTTATTAC
1 GTGTAGTACTAAGTGCAGGTTATTAC
73910127 GTGTA
1 GTGTA
73910132 CCGGACTGTT
Statistics
Matches: 39, Mismatches: 10, Indels: 12
0.64 0.16 0.20
Matches are distributed among these distances:
24 11 0.28
25 12 0.31
26 16 0.41
ACGTcount: A:0.25, C:0.11, G:0.31, T:0.33
Consensus pattern (26 bp):
GTGTAGTACTAAGTGCAGGTTATTAC
Found at i:73929964 original size:48 final size:48
Alignment explanation
Indices: 73929894--73930064 Score: 173
Period size: 48 Copynumber: 3.5 Consensus size: 48
73929884 AGCCAGTGAG
* *
73929894 AGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTA
1 AGACCATGTCTGGAACATGGCATCGGCATATATATGAGAGCTAGTGTA
* * * * * * * *
73929942 AGGCCATGTCTGGGACAAGGCATTGGCCTCA-ACATGTGGGCTAGTGTA
1 AGACCATGTCTGGAACATGGCATCGGCAT-ATATATGAGAGCTAGTGTA
* * * *
73929990 AGACCATGTTTGGAACATGGCATCGACACCGATATATGAGAGCCAGTGTA
1 AGACCATGTCTGGAACATGGCATCGGCA--TATATATGAGAGCTAGTGTA
*
73930040 AGACCATGTCTGGGACATGGCATCG
1 AGACCATGTCTGGAACATGGCATCG
73930065 ACATCTTACC
Statistics
Matches: 95, Mismatches: 24, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
48 58 0.61
49 1 0.01
50 36 0.38
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGACCATGTCTGGAACATGGCATCGGCATATATATGAGAGCTAGTGTA
Found at i:73939120 original size:120 final size:122
Alignment explanation
Indices: 73938966--73939256 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
73938956 TAGTATGATG
* **
73938966 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
73939031 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
73939087 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* *
73939150 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
73939208 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
73939257 ATATGATTAA
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.01
120 106 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:73939153 original size:59 final size:58
Alignment explanation
Indices: 73938973--73939256 Score: 150
Period size: 59 Copynumber: 4.7 Consensus size: 58
73938963 ATGATAAATT
* ** * *
73938973 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
73939032 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
73939093 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
* * ** * * * *
73939152 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-T-TATTATA-AAT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATATTTTATAGTAT
*
73939214 T
58 C
*
73939215 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAA
73939257 ATATGATTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 45
0.67 0.15 0.18
Matches are distributed among these distances:
56 12 0.07
57 6 0.04
58 13 0.08
59 39 0.23
60 11 0.07
61 30 0.18
62 15 0.09
63 12 0.07
64 7 0.04
65 6 0.04
66 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Found at i:73939235 original size:18 final size:19
Alignment explanation
Indices: 73939200--73939236 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
73939190 ATTATTAAGA
73939200 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
73939219 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
73939237 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:73939466 original size:44 final size:45
Alignment explanation
Indices: 73939401--73939491 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
73939391 ACCTCTATTC
* * *
73939401 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
73939445 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
73939490 CA
1 CA
73939492 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:73939493 original size:16 final size:16
Alignment explanation
Indices: 73939472--73939540 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
73939462 GATTAGCTAT
73939472 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
73939488 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
73939505 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
73939521 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
73939537 TACA
1 TACA
73939541 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:73939514 original size:33 final size:32
Alignment explanation
Indices: 73939472--73939540 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
73939462 GATTAGCTAT
73939472 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
73939505 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
73939537 TACA
1 TACA
73939541 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:73943307 original size:48 final size:48
Alignment explanation
Indices: 73943242--73943709 Score: 623
Period size: 48 Copynumber: 9.8 Consensus size: 48
73943232 ATAACGATGT
* * *
73943242 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCATGTAACAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACGTAACAATGCC
* *
73943290 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCACGTAACAATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACGTAACAATGCC
* ** *
73943338 GATGCCATGTCCCAAACATGGCCTTACTTTGGCTTACGTAACAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACGTAACAATGCC
* * * *
73943386 GATGCCATGTCCCAGACATGGTCTTCCACTGGCTTACGTAACAATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACGTAACAATGCC
* * *
73943434 GATGCCATGT-CCAAGACATGGTCTTACACTGGCTTACGCAACAATGCT
1 GATGCCATGTCCCAA-ACATGGTCTTACACTGGCTCACGTAACAATGCC
* * **
73943482 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCGTGTAACAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACGTAACAATGCC
* * * * * *
73943530 AATGCCATGTACCAGACATGGTCTTACATTGGCTCACATAACAATACC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACGTAACAATGCC
* *
73943578 GATGCCATGTCCCAAACATAGTCTTACACTGGCTCACGTAACAATACC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACGTAACAATGCC
* * * *
73943626 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATAACAATACC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACGTAACAATGCC
*
73943674 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCA
73943710 GATATTGCCA
Statistics
Matches: 374, Mismatches: 44, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
47 3 0.01
48 368 0.98
49 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACGTAACAATGCC
Found at i:73960249 original size:45 final size:45
Alignment explanation
Indices: 73960190--73960314 Score: 180
Period size: 45 Copynumber: 2.8 Consensus size: 45
73960180 CGATACCGAT
*
73960190 GTCCTAGACATGGTCTTACACATAACCACATATATCGATGCCAAC
1 GTCCTAGACGTGGTCTTACACATAACCACATATATCGATGCCAAC
** *
73960235 GTCCTAGACGTGGTCTTACATGTAACCACATATATCGATGCCAAT
1 GTCCTAGACGTGGTCTTACACATAACCACATATATCGATGCCAAC
* *
73960280 GTCCCAGACGTGGTCTTACACGAGAA-CACATATAT
1 GTCCTAGACGTGGTCTTACAC-ATAACCACATATAT
73960315 TGGAAATCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 69 0.97
46 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (45 bp):
GTCCTAGACGTGGTCTTACACATAACCACATATATCGATGCCAAC
Found at i:73965530 original size:20 final size:20
Alignment explanation
Indices: 73965497--73965541 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
73965487 AGCACATGTA
* *
73965497 TTCATAAAAGTTTAGAATTT
1 TTCATAAAAGTTTACAACTT
* *
73965517 TTCATCAAATTTTACAACTT
1 TTCATAAAAGTTTACAACTT
73965537 TTCAT
1 TTCAT
73965542 TTTAGTCCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (20 bp):
TTCATAAAAGTTTACAACTT
Found at i:73990644 original size:87 final size:87
Alignment explanation
Indices: 73990505--73990676 Score: 263
Period size: 87 Copynumber: 2.0 Consensus size: 87
73990495 GGGACACGCT
* * * *
73990505 CGTGTAACCCTGGGACACGCCCGTGCTAGAGGTCGTGTTAGACCCTATGTAACTCTCTGACTTGC
1 CGTGTAACCCTAGGACACACCCGTACTAGAGGTCGTGTTAGACCCTATGTAACTCTCTAACTTGC
* *
73990570 ACACACGGCCCTGCCACACGTC
66 ACACACGACCATGCCACACGTC
* * *
73990592 CGTGTGACCCTAGGACACACCCGTACTAGAGGTCGTGTTTGACCCTGTGTAACTCTCTAACTTGC
1 CGTGTAACCCTAGGACACACCCGTACTAGAGGTCGTGTTAGACCCTATGTAACTCTCTAACTTGC
73990657 ACACACGACCATGCCACACG
66 ACACACGACCATGCCACACG
73990677 CACGTCTACA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.22, C:0.34, G:0.23, T:0.22
Consensus pattern (87 bp):
CGTGTAACCCTAGGACACACCCGTACTAGAGGTCGTGTTAGACCCTATGTAACTCTCTAACTTGC
ACACACGACCATGCCACACGTC
Found at i:73995590 original size:20 final size:20
Alignment explanation
Indices: 73995556--73995605 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
73995546 TTTCCAGCAC
*
73995556 ATTTATTCATAAAATTTTAGA
1 ATTT-TTCATAAAATTTTACA
*
73995577 ATTTTTCATCAAATTTTACA
1 ATTTTTCATAAAATTTTACA
*
73995597 ACTTTTCAT
1 ATTTTTCAT
73995606 TTTAGTCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTTTTCATAAAATTTTACA
Found at i:73997243 original size:15 final size:16
Alignment explanation
Indices: 73997213--73997246 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
73997203 TTTGGTTTGG
73997213 TTATTTTAGTATTTAAT
1 TTATTTTAG-ATTTAAT
73997230 TTATTTTA-ATTTAAT
1 TTATTTTAGATTTAAT
73997245 TT
1 TT
73997247 TTACAGGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
TTATTTTAGATTTAAT
Found at i:73999200 original size:13 final size:13
Alignment explanation
Indices: 73999184--73999210 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73999174 AATTTAGCAA
73999184 TTTTTCTTTTAAT
1 TTTTTCTTTTAAT
73999197 TTTTTCTTTTAAT
1 TTTTTCTTTTAAT
73999210 T
1 T
73999211 AATAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTCTTTTAAT
Found at i:74002749 original size:41 final size:41
Alignment explanation
Indices: 74002698--74002798 Score: 193
Period size: 41 Copynumber: 2.5 Consensus size: 41
74002688 TGTGAATACT
*
74002698 TGACAGCTTGTGTGAGCAGCACCGCGTAGCTACATCTTGAC
1 TGACAGCTTGTGTGAGCAGCACCGCGTAGCTACATCTTAAC
74002739 TGACAGCTTGTGTGAGCAGCACCGCGTAGCTACATCTTAAC
1 TGACAGCTTGTGTGAGCAGCACCGCGTAGCTACATCTTAAC
74002780 TGACAGCTTGTGTGAGCAG
1 TGACAGCTTGTGTGAGCAG
74002799 GCCCGTCGAT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (41 bp):
TGACAGCTTGTGTGAGCAGCACCGCGTAGCTACATCTTAAC
Found at i:74003618 original size:15 final size:17
Alignment explanation
Indices: 74003586--74003618 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
74003576 TGTTGAAACT
74003586 TGTGAATGTGAGTTTGG
1 TGTGAATGTGAGTTTGG
74003603 TGTGAAT-TGA-TTTGG
1 TGTGAATGTGAGTTTGG
74003618 T
1 T
74003619 AAATTATGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (17 bp):
TGTGAATGTGAGTTTGG
Found at i:74005097 original size:24 final size:24
Alignment explanation
Indices: 74005044--74005102 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 24
74005034 CAATATATAT
74005044 ATCAATTCAATCAATATAAATTAA
1 ATCAATTCAATCAATATAAATTAA
*
74005068 AT-AATTC-ATCACATACTAAA-TCA
1 ATCAATTCAATCA-ATA-TAAATTAA
74005091 ATCAATTTCAAT
1 ATCAA-TTCAAT
74005103 TGCAAAACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
22 4 0.14
23 12 0.41
24 8 0.28
25 3 0.10
26 2 0.07
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (24 bp):
ATCAATTCAATCAATATAAATTAA
Found at i:74005875 original size:5 final size:5
Alignment explanation
Indices: 74005867--74005897 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
74005857 CTTTATATTT
74005867 TAATA TAATAA TAATA TAATA TAATA TAATA
1 TAATA TAAT-A TAATA TAATA TAATA TAATA
74005898 ATATATTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
TAATA
Found at i:74008748 original size:10 final size:10
Alignment explanation
Indices: 74008730--74008781 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
74008720 ATTATTAACA
*
74008730 TAATGAATTT
1 TAATTAATTT
74008740 TAATTAATTTT
1 TAATTAA-TTT
74008751 ATAATTAATTT
1 -TAATTAATTT
*
74008762 TGATTAATTT
1 TAATTAATTT
*
74008772 TGATT-ATTT
1 TAATTAATTT
74008781 T
1 T
74008782 CGACAGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 5 0.13
10 20 0.53
11 6 0.16
12 7 0.18
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (10 bp):
TAATTAATTT
Found at i:74008754 original size:22 final size:22
Alignment explanation
Indices: 74008729--74008772 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
74008719 AATTATTAAC
74008729 ATAATGAATTTTAATTAATTTT
1 ATAATGAATTTTAATTAATTTT
* *
74008751 ATAATTAATTTTGATTAATTTT
1 ATAATGAATTTTAATTAATTTT
74008773 GATTATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATGAATTTTAATTAATTTT
Found at i:74012533 original size:41 final size:43
Alignment explanation
Indices: 74012430--74012533 Score: 131
Period size: 43 Copynumber: 2.5 Consensus size: 43
74012420 TCGATGTGTG
* *
74012430 ATTTGTGTAAGATCATGTCTAGGACATTGGCATCGAAGTGAGA
1 ATTTGTGTAAGACCATGTCTAGAACATTGGCATCGAAGTGAGA
** * *
74012473 AAATGTGTAAGACCATGTCTAGAACATTGGCATCGCA-T-ATA
1 ATTTGTGTAAGACCATGTCTAGAACATTGGCATCGAAGTGAGA
*
74012514 ATTTGTGTAAGACCCTGTCT
1 ATTTGTGTAAGACCATGTCT
74012534 GGGTCAATGG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 19 0.37
42 1 0.02
43 32 0.62
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (43 bp):
ATTTGTGTAAGACCATGTCTAGAACATTGGCATCGAAGTGAGA
Found at i:74012545 original size:41 final size:40
Alignment explanation
Indices: 74012430--74012552 Score: 111
Period size: 43 Copynumber: 3.0 Consensus size: 40
74012420 TCGATGTGTG
* * * *
74012430 ATTTGTGTAAGATCATGTCTAGGACATTGGCATCGAAGTGAGA
1 ATTTGTGTAAGACCATGTCTAGAACAATGGCATCG-A-T-ATA
** *
74012473 AAATGTGTAAGACCATGTCTAGAACATTGGCATCGCATATA
1 ATTTGTGTAAGACCATGTCTAGAACAATGGCATCG-ATATA
* * **
74012514 ATTTGTGTAAGACCCTGTCTGGGTCAATGGCATCGATAT
1 ATTTGTGTAAGACCATGTCTAGAACAATGGCATCGATAT
74012553 GTGATAACAT
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
40 4 0.06
41 30 0.45
42 1 0.01
43 32 0.48
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (40 bp):
ATTTGTGTAAGACCATGTCTAGAACAATGGCATCGATATA
Found at i:74023397 original size:21 final size:20
Alignment explanation
Indices: 74023353--74023401 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
74023343 TCAGCTCCCA
* *
74023353 TCAGCTCACTTGAGCTCGAT
1 TCAGCTCGCTTGAGCTAGAT
*
74023373 TCAGCTCGTTTGAGCTAGAAT
1 TCAGCTCGCTTGAGCTAG-AT
74023394 TCAGCTCG
1 TCAGCTCG
74023402 ATCTAGCTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (20 bp):
TCAGCTCGCTTGAGCTAGAT
Found at i:74051981 original size:15 final size:15
Alignment explanation
Indices: 74051961--74052004 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
74051951 AAGATCTTAT
74051961 AATCATAACTTACTC
1 AATCATAACTTACTC
*
74051976 AATCATAACCTACTC
1 AATCATAACTTACTC
74051991 AATCATAACCTTAC
1 AATCATAA-CTTAC
74052005 CAAGGGTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.41, C:0.30, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCATAACTTACTC
Found at i:74052290 original size:42 final size:42
Alignment explanation
Indices: 74052178--74052341 Score: 197
Period size: 42 Copynumber: 3.9 Consensus size: 42
74052168 TACTATACCA
* * *
74052178 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATTG
* *
74052220 ATGCCAATAGCCCA-ACTATAGTCTTACACGAAGTCTCATATTG
1 ATGCC-ATATCCCAGA-TATGGTCTTACACGAAGTCTCATATTG
* * *
74052263 ATGCCATATCCTAGATATGGTCTTACACGTAGTCTCATACTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
* *
74052305 ATGTCATATCCCAGATATGGTCTTACACGTAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCA
74052342 GTAACCCTAA
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
42 73 0.69
43 33 0.31
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
Found at i:74066627 original size:11 final size:11
Alignment explanation
Indices: 74066611--74066645 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
74066601 TATCCTACTC
74066611 TTATTAAATTG
1 TTATTAAATTG
74066622 TTATTAAATTG
1 TTATTAAATTG
* *
74066633 TTGTTAAAATG
1 TTATTAAATTG
74066644 TT
1 TT
74066646 TCATGGGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.54
Consensus pattern (11 bp):
TTATTAAATTG
Found at i:74072178 original size:19 final size:18
Alignment explanation
Indices: 74072143--74072178 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74072133 GAAGCAAGCA
*
74072143 ATGATTGAAGAAATCAGG
1 ATGATTGAAAAAATCAGG
74072161 ATGATTGAAAAGAATCAG
1 ATGATTGAAAA-AATCAG
74072179 ACCTGGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.06, G:0.25, T:0.22
Consensus pattern (18 bp):
ATGATTGAAAAAATCAGG
Found at i:74078442 original size:23 final size:23
Alignment explanation
Indices: 74078416--74078461 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
74078406 AATTATAAAT
74078416 TTAAATTCGTAAGAAAAATCATA
1 TTAAATTCGTAAGAAAAATCATA
74078439 TTAAATTCGTAAGAAAAATCATA
1 TTAAATTCGTAAGAAAAATCATA
74078462 CTTTTAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (23 bp):
TTAAATTCGTAAGAAAAATCATA
Found at i:74085594 original size:47 final size:47
Alignment explanation
Indices: 74085518--74085782 Score: 170
Period size: 47 Copynumber: 5.6 Consensus size: 47
74085508 GGTACGATGC
* *
74085518 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACACATCTAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCACACATCTAAGT
* * ***
74085566 CGATGTCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCACA-C-ATCTAAGT
* * * * *
74085615 CGATGCCATGTCCCAGATAGGGCTTGCACT-G---ACACATGTCAAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCACACATCT-AAGT
* * * * **
74085659 CGATGCCATGTCCCAAACATGTTTTACACTAGCT--TTCATCTTAA-T
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCACACATC-TAAGT
* * * * *
74085704 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GGC
1 -C-GATGCCATGTCCCAGACA-GGTCTTACACTGGCTCACA-CATCTAAGT
*
74085754 CGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
74085783 AGCATACATC
Statistics
Matches: 165, Mismatches: 38, Indels: 30
0.71 0.16 0.13
Matches are distributed among these distances:
43 2 0.01
44 26 0.16
45 3 0.02
46 16 0.10
47 49 0.30
48 34 0.21
49 32 0.19
50 1 0.01
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCACACATCTAAGT
Found at i:74088438 original size:39 final size:39
Alignment explanation
Indices: 74088338--74088522 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 39
74088328 TTGAATGATG
* * *
74088338 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* * *
74088378 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
74088417 TCCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
74088457 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
74088497 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74088523 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 82 0.66
41 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:74088477 original size:79 final size:81
Alignment explanation
Indices: 74088339--74088522 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
74088329 TGAATGATGT
* *
74088339 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCTGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
74088403 GTGCGAGATACTA-ATC
66 GTGCGAGATACTATA-A
* * * **
74088419 CCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
74088481 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
74088498 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74088523 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:74088544 original size:79 final size:79
Alignment explanation
Indices: 74088391--74088555 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
74088381 GGACTAAGAT
* **
74088391 CCGAAGGCATTTGTGCGAGATACTAATCCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
74088456 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74088470 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
74088533 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74088549 CCGAAGG
1 CCGAAGG
74088556 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74091466 original size:27 final size:27
Alignment explanation
Indices: 74091428--74091549 Score: 172
Period size: 27 Copynumber: 4.5 Consensus size: 27
74091418 GGCTGCTGGC
*
74091428 TTTATAGAATTACTGTTTTACCCTTGA
1 TTTATAGAATTACTGTTTTACCCTCGA
* *
74091455 TTTATAGAATTACCGTTTTACCCTCAA
1 TTTATAGAATTACTGTTTTACCCTCGA
* *
74091482 TTTATAGAATTATTGTTTTACCCTTGA
1 TTTATAGAATTACTGTTTTACCCTCGA
*
74091509 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTATAGAATTACTGTTTTACCCTCGA
* *
74091536 TTTACAAAATTACT
1 TTTATAGAATTACT
74091550 AAAATACCAT
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.29, C:0.17, G:0.09, T:0.45
Consensus pattern (27 bp):
TTTATAGAATTACTGTTTTACCCTCGA
Found at i:74091510 original size:54 final size:54
Alignment explanation
Indices: 74091428--74091549 Score: 190
Period size: 54 Copynumber: 2.3 Consensus size: 54
74091418 GGCTGCTGGC
*
74091428 TTTATAGAATTACTGTTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCAA
1 TTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAA
* * *
74091482 TTTATAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGA
1 TTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAA
* *
74091536 TTTACAAAATTACT
1 TTTATAGAATTACT
74091550 AAAATACCAT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.29, C:0.17, G:0.09, T:0.45
Consensus pattern (54 bp):
TTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAA
Found at i:74091557 original size:27 final size:27
Alignment explanation
Indices: 74091527--74091801 Score: 229
Period size: 27 Copynumber: 10.2 Consensus size: 27
74091517 ATTACTGTTT
* *
74091527 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
74091554 TACCATCGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
74091581 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * * *
74091608 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
74091634 TACCCTTGGTTTATAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
74091661 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
74091688 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * **
74091715 TACCACT-GGTTTGTGAAATTACTGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
*
74091742 TACCCTCAATTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
74091769 TATCCCT-GATTTACAAAGTTA-CAGAAA
1 TA-CCCTCGATTTATAAAATTACCA-AAA
74091796 TACCCT
1 TACCCT
74091802 TGACTTTCTA
Statistics
Matches: 200, Mismatches: 39, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
26 31 0.16
27 164 0.82
28 5 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:74091585 original size:54 final size:54
Alignment explanation
Indices: 74091527--74091858 Score: 217
Period size: 54 Copynumber: 6.1 Consensus size: 54
74091517 ATTACTGTTT
* *
74091527 TACCCTCGATTTACAAAATTACTAAAATACCATCGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCATCGGTTTACAAAATTACCAAAA
* * * * ** * *
74091581 TACCCTCGA-TCAGTAAAATTACCAAAATACCCT-AGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCATCGGTTTACAAAATTACCAAAA
* * * * ** **
74091634 TACCCTTGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCATCGGTTTACAAAATTACCAAAA
* * *** **
74091688 TACCC-CTAGTTTGTAAAATTACCAAAATACCA-CTGGTTTGTGAAATTACTGAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCATC-GGTTTACAAAATTACCAAAA
* * * *
74091742 TACCCTCAATTTATAAAATTACCAAAATATCCCT-GATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTATAAAATTACCAAAATA-CCATCGGTTTACAAAATTACCA-AAA
* * *** * **
74091796 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTAACAAAATTACTGAAA
1 TACCCTCGA-TTTAT-AAAATTACCAAAATACCATCGGTTT-ACAAAATTACCAAAA
74091853 TACCCT
1 TACCCT
74091859 TGGTTTGTAG
Statistics
Matches: 214, Mismatches: 50, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
53 43 0.20
54 127 0.59
55 11 0.05
56 16 0.07
57 17 0.08
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCATCGGTTTACAAAATTACCAAAA
Found at i:74091736 original size:81 final size:80
Alignment explanation
Indices: 74091541--74091775 Score: 312
Period size: 81 Copynumber: 2.9 Consensus size: 80
74091531 CTCGATTTAC
* * * **
74091541 AAAATTACTAAAATACCA-TCGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCACT-GGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
74091605 AAATACCCTAGTCTGT
65 AAATACCCTAGTCTGT
*
74091621 AAAATTGCTAAAATACC-CTTGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
1 AAAATTACTAAAATACCAC-TGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
*
74091685 AAATACCCCTAGTTTGT
65 AAATA-CCCTAGTCTGT
* * * * *
74091702 AAAATTACCAAAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAATTTATAAAATTACCAA
1 AAAATTACTAAAATACCACTGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
74091767 AATATCCCT
66 AATA-CCCT
74091776 GATTTACAAA
Statistics
Matches: 137, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
80 60 0.44
81 76 0.55
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCACTGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCTAGTCTGT
Found at i:74091797 original size:81 final size:81
Alignment explanation
Indices: 74091541--74091803 Score: 288
Period size: 81 Copynumber: 3.3 Consensus size: 81
74091531 CTCGATTTAC
* * * * * * *
74091541 AAAATTACTAAAATACCATCGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCGAAATACCCTCAATTTA-TAAAATTACCA
74091605 AAATA-CCCTAG-TCTGT
65 AAATACCCCTAGAT-TGT
* * *
74091621 AAAATTGCTAAAATACCCTTGGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCGAAATACCCTCAATTTATAAAATTACCAA
*
74091686 AATACCCCTAGTTTGT
66 AATACCCCTAGATTGT
* * *
74091702 AAAATTACCAAAATACCAC-TGGTTTGTGAAATTACTGAAATACCCTCAATTTATAAAATTACCA
1 AAAATTACCAAAATACC-CTTGGTTTATAAAATTACCGAAATACCCTCAATTTATAAAATTACCA
*
74091766 AAATATCCCT-GATT-T
65 AAATACCCCTAGATTGT
74091781 ACAAAGTTA-CAGAAATACCCTTG
1 A-AAA-TTACCA-AAATACCCTTG
74091804 ACTTTCTAAA
Statistics
Matches: 159, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
79 2 0.01
80 68 0.43
81 87 0.55
82 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGGTTTATAAAATTACCGAAATACCCTCAATTTATAAAATTACCAA
AATACCCCTAGATTGT
Found at i:74092009 original size:27 final size:27
Alignment explanation
Indices: 74091918--74092009 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
74091908 ACCCCTATTA
*
74091918 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
74091945 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
74091972 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
74091999 GGTAAAATGAC
1 GGTAAAATGAC
74092010 GAATGTGCCC
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
27 57 0.97
28 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:74092881 original size:54 final size:51
Alignment explanation
Indices: 74092799--74092936 Score: 210
Period size: 54 Copynumber: 2.7 Consensus size: 51
74092789 GAGGAAGTGC
*
74092799 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
74092851 AAAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 --AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
74092904 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
74092937 AGGCCTCCAG
Statistics
Matches: 82, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 10 0.12
53 15 0.18
54 35 0.43
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:74092898 original size:25 final size:26
Alignment explanation
Indices: 74092799--74092936 Score: 176
Period size: 26 Copynumber: 5.3 Consensus size: 26
74092789 GAGGAAGTGC
*
74092799 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
74092825 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
74092851 AAAAAAGGGCTTATGCCCCAGTTTATTG
1 --AAAAGGGCTTATGCCCCAGTTTATTG
**
74092879 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
74092904 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
74092927 AAAAGAGGCT
1 AAAAG-GGCT
74092937 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.31
26 33 0.33
28 24 0.24
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:74099402 original size:31 final size:31
Alignment explanation
Indices: 74099367--74099430 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
74099357 TTATGTAATG
74099367 CTCCTACTAATTTTCAGCGTTGCATGTTGGC
1 CTCCTACTAATTTTCAGCGTTGCATGTTGGC
*
74099398 CTCCTACTACTTTTCAGCGTTGCATGTTGGC
1 CTCCTACTAATTTTCAGCGTTGCATGTTGGC
74099429 CT
1 CT
74099431 TTTTGATGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.14, C:0.28, G:0.19, T:0.39
Consensus pattern (31 bp):
CTCCTACTAATTTTCAGCGTTGCATGTTGGC
Found at i:74102281 original size:14 final size:14
Alignment explanation
Indices: 74102262--74102292 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
74102252 ACCTCGTTTG
74102262 ATCCCTCATCAATC
1 ATCCCTCATCAATC
*
74102276 ATCCCTCATCCATC
1 ATCCCTCATCAATC
74102290 ATC
1 ATC
74102293 ATTCTCTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.45, G:0.00, T:0.29
Consensus pattern (14 bp):
ATCCCTCATCAATC
Done.