Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 236 of 325
Found at i:74458783 original size:43 final size:43
Alignment explanation
Indices: 74458620--74458786 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
74458610 TAGCTCATAA
* * * * * *
74458620 AATGCC-ATATCCCAGATATGGTCTTACATGTTATTAC-ATATC
1 AATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATA-C
* * * * *
74458662 GATGCCACTGTCCCAGACAGGGTCTTACACGAAATC-GATTAAC
1 AATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAAT-AC
* *
74458705 GATGCCAATGTCCCAGACAGGGTCTTACACATAATCACAATAC
1 AATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATAC
* **
74458748 AATGCCAATGTCCCAGACATGGTCTTACTTGTAATCACA
1 AATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACA
74458787 TCTCGATAAC
Statistics
Matches: 100, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
42 5 0.05
43 92 0.92
44 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
AATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATAC
Found at i:74460674 original size:90 final size:90
Alignment explanation
Indices: 74460580--74460824 Score: 225
Period size: 90 Copynumber: 2.8 Consensus size: 90
74460570 GCCAAAGCTT
*** * *
74460580 TCCCTTTTCATAATTTTATGGTCATCACCATCCCTTTTCATTGTTCGATGGTC-ATTA-CCATCT
1 TCCCTTTTCATAATTTTATGGTCATCACCATCCCTTTTCATAAATCGATAGCCGA--AGCCATC-
*
74460643 C-CTTTCATTGTTCGATGGCTGTCACCA
63 CACTTTCATAGTTCGATGGCTGTCACCA
* * * ** * * *
74460670 TCCCTTTTCATAATTTGATAGCCAAAACTATCCCTTTTCATAAATCGATAGCCGAAGCTATCCAT
1 TCCCTTTTCATAATTTTATGGTCATCACCATCCCTTTTCATAAATCGATAGCCGAAGCCATCCAC
* *
74460735 TTTCATAGTTTGATGGTTGTCACCA
66 TTTCATAGTTCGATGGCTGTCACCA
* * * *
74460760 TCCCTTTTCAT--TGTTTATGGTCGTCACCATCCCTTTTCAT-AATTGATAGTCGAAGCTATCC-
1 TCCCTTTTCATAAT-TTTATGGTCATCACCATCCCTTTTCATAAATCGATAGCCGAAGCCATCCA
74460821 CTTT
65 CTTT
74460825 TCCTATTCGT
Statistics
Matches: 125, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
87 3 0.02
88 20 0.16
89 22 0.18
90 79 0.63
91 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (90 bp):
TCCCTTTTCATAATTTTATGGTCATCACCATCCCTTTTCATAAATCGATAGCCGAAGCCATCCAC
TTTCATAGTTCGATGGCTGTCACCA
Found at i:74460709 original size:60 final size:60
Alignment explanation
Indices: 74460645--74460826 Score: 156
Period size: 60 Copynumber: 3.1 Consensus size: 60
74460635 TACCATCTCC
* *
74460645 TTTCATTGTTCGATGGCTGTCACCATCCCTTTTCATAATTTGATAGCCAAAACTATCCCT
1 TTTCATTGTTCGATGGCTGTCACCATCCCTTTTCATAATTTGATAGTCGAAACTATCCCT
*** * * * * * * * * ** *
74460705 TTTCATAAATCGATAGCCG-AAGCTATCCATTTTCATAGTTTGATGGTTGTCACCATCCCT
1 TTTCATTGTTCGATGGCTGTCA-CCATCCCTTTTCATAATTTGATAGTCGAAACTATCCCT
* *
74460765 TTTCATTGTT-TATGG-TCGTCACCATCCCTTTTCATAA-TTGATAGTCGAAGCTATCCCT
1 TTTCATTGTTCGATGGCT-GTCACCATCCCTTTTCATAATTTGATAGTCGAAACTATCCCT
74460823 TTTC
1 TTTC
74460827 CTATTCGTTA
Statistics
Matches: 87, Mismatches: 32, Indels: 8
0.69 0.25 0.06
Matches are distributed among these distances:
58 19 0.22
59 18 0.21
60 50 0.57
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.40
Consensus pattern (60 bp):
TTTCATTGTTCGATGGCTGTCACCATCCCTTTTCATAATTTGATAGTCGAAACTATCCCT
Found at i:74460785 original size:29 final size:30
Alignment explanation
Indices: 74460580--74460800 Score: 153
Period size: 30 Copynumber: 7.4 Consensus size: 30
74460570 GCCAAAGCTT
* * *
74460580 TCCCTTTTCATAATTTTATGGTCATCACCA
1 TCCCTTTTCATAGTTTGATGGTCGTCACCA
* * * *
74460610 TCCCTTTTCATTGTTCGATGGTCATTACCA
1 TCCCTTTTCATAGTTTGATGGTCGTCACCA
* *
74460640 TCTCC-TTTCATTGTTCGATGG-CTGTCACCA
1 TC-CCTTTTCATAGTTTGATGGTC-GTCACCA
* * * *** *
74460670 TCCCTTTTCATAATTTGATAGCCAAAACTA
1 TCCCTTTTCATAGTTTGATGGTCGTCACCA
** * * * * *
74460700 TCCCTTTTCATAAATCGATAGCCG-AAGCTA
1 TCCCTTTTCATAGTTTGATGGTCGTCA-CCA
* *
74460730 TCCATTTTCATAGTTTGATGGTTGTCACCA
1 TCCCTTTTCATAGTTTGATGGTCGTCACCA
*
74460760 TCCCTTTTCATTGTTT-ATGGTCGTCACCA
1 TCCCTTTTCATAGTTTGATGGTCGTCACCA
74460789 TCCCTTTTCATA
1 TCCCTTTTCATA
74460801 ATTGATAGTC
Statistics
Matches: 154, Mismatches: 31, Indels: 13
0.78 0.16 0.07
Matches are distributed among these distances:
29 28 0.18
30 122 0.79
31 4 0.03
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.41
Consensus pattern (30 bp):
TCCCTTTTCATAGTTTGATGGTCGTCACCA
Found at i:74460820 original size:29 final size:28
Alignment explanation
Indices: 74460669--74460826 Score: 100
Period size: 30 Copynumber: 5.4 Consensus size: 28
74460659 GGCTGTCACC
* *
74460669 ATCCCTTTTCATAATTTGATAGCCAAAACT
1 ATCCCTTTTCATAA-TTGATAGTC-GAACT
* *
74460699 ATCCCTTTTCATAAATCGATAGCCGAAGCT
1 ATCCCTTTTCAT-AATTGATAGTCGAA-CT
* * * * * *
74460729 ATCCATTTTCATAGTTTGATGGTTGTCACC
1 ATCCCTTTTCATA-ATTGATAGTCG-AACT
** * * * *
74460759 ATCCCTTTTCATTGTTTATGGTCGTCACC
1 ATCCCTTTTCATAATTGATAGTCG-AACT
74460788 ATCCCTTTTCATAATTGATAGTCGAAGCT
1 ATCCCTTTTCATAATTGATAGTCGAA-CT
74460817 ATCCCTTTTC
1 ATCCCTTTTC
74460827 CTATTCGTTA
Statistics
Matches: 102, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
28 1 0.01
29 47 0.46
30 51 0.50
31 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (28 bp):
ATCCCTTTTCATAATTGATAGTCGAACT
Found at i:74480779 original size:24 final size:27
Alignment explanation
Indices: 74480725--74480780 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 27
74480715 TCGAATGAAC
*
74480725 AATATACAAGAAAACTTAAAATGAATG
1 AATATACAAGAAAACTTAAAATAAATG
*
74480752 AATATA-AA-AAAATTTAAAATAAAT-
1 AATATACAAGAAAACTTAAAATAAATG
74480776 AATAT
1 AATAT
74480781 TATATATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 5 0.19
25 14 0.52
26 2 0.07
27 6 0.22
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.27
Consensus pattern (27 bp):
AATATACAAGAAAACTTAAAATAAATG
Found at i:74482907 original size:132 final size:132
Alignment explanation
Indices: 74482710--74483590 Score: 1539
Period size: 132 Copynumber: 6.7 Consensus size: 132
74482700 AAGATAGGAC
* * * *** * *
74482710 CTGCTATCTTCGATCTACTTCG-CGCCAATACATGAAGACAAGATCTGCGTCGTCGATCCACTTC
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
* * * *
74482774 CTACCCATATAGAAAGGTAGGACCTGCTATCTTCGATCTACTTCACGCTAATACATGAAGACAAG
66 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
74482839 AT
131 AT
* * *
74482841 CTACTTTCTGTGATCTACTTCGCCACCAATATGGGAAGATAAGATCTGCATCTTCGATCCACTTC
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
74482906 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
66 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
74482971 AT
131 AT
* *
74482973 TTGCTTTCTGTGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
74483038 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
66 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
74483103 AT
131 AT
*
74483105 CTGTTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
*
74483170 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAAG
66 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
74483235 AT
131 AT
74483237 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
74483302 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
66 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
74483367 AT
131 AT
* *
74483369 CTGTTTTCTGCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
74483434 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
66 CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
74483499 AT
131 AT
* * *
74483501 CTGTTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAATATCTGCATCTTTGATCCACTTC
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
74483566 CTACCAATATAGGAAGATAGGACCT
66 CTACCAATATAGGAAGATAGGACCT
74483591 ATTTACGCCT
Statistics
Matches: 720, Mismatches: 29, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
131 18 0.03
132 702 0.98
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (132 bp):
CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
AT
Found at i:74495481 original size:24 final size:27
Alignment explanation
Indices: 74495427--74495482 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 27
74495417 TCGAATGAAC
*
74495427 AATATACAAGAAAACTTAAAATGAATG
1 AATATACAAGAAAACTTAAAATAAATG
*
74495454 AATATA-AA-AAAATTTAAAATAAAT-
1 AATATACAAGAAAACTTAAAATAAATG
74495478 AATAT
1 AATAT
74495483 TATATATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 5 0.19
25 14 0.52
26 2 0.07
27 6 0.22
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.27
Consensus pattern (27 bp):
AATATACAAGAAAACTTAAAATAAATG
Found at i:74501151 original size:56 final size:56
Alignment explanation
Indices: 74501063--74501176 Score: 149
Period size: 56 Copynumber: 2.0 Consensus size: 56
74501053 TATTTCCACT
** *
74501063 ATTTATTTTCCTGCCACTTTAGGTATGCAATCTAC-ATAAAGTATAATTGAACATGG
1 ATTTATTTTCCCACCACTTTAGGTATGAAATCT-CGATAAAGTATAATTGAACATGG
* * * *
74501119 ATTTATTTTCCCACCACTTTATGTTTGAAATCTCGATATAGTATCATTGAACATGG
1 ATTTATTTTCCCACCACTTTAGGTATGAAATCTCGATAAAGTATAATTGAACATGG
74501175 AT
1 AT
74501177 CATAGTCTAG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 1 0.02
56 49 0.98
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (56 bp):
ATTTATTTTCCCACCACTTTAGGTATGAAATCTCGATAAAGTATAATTGAACATGG
Found at i:74511569 original size:3 final size:3
Alignment explanation
Indices: 74511561--74511594 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
74511551 ATGAAAAAAT
74511561 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
74511595 CCAGAAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:74514848 original size:17 final size:17
Alignment explanation
Indices: 74514826--74514861 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
74514816 ATTAGATTAT
74514826 ATTTAAAATAA-ATTAAA
1 ATTTAAAA-AATATTAAA
74514843 ATTTAAAAAATATTAAA
1 ATTTAAAAAATATTAAA
74514860 AT
1 AT
74514862 AAACATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTTAAAAAATATTAAA
Found at i:74515591 original size:21 final size:21
Alignment explanation
Indices: 74515565--74515616 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
74515555 TAAAAGTTAT
74515565 CGATACTTTTTCTACAGGTAC
1 CGATACTTTTTCTACAGGTAC
*
74515586 CGATACTTTTTCTATAGGTAC
1 CGATACTTTTTCTACAGGTAC
74515607 CGATACTTTT
1 CGATACTTTT
74515617 AGCATTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.42
Consensus pattern (21 bp):
CGATACTTTTTCTACAGGTAC
Found at i:74515723 original size:21 final size:22
Alignment explanation
Indices: 74515690--74515732 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
74515680 TTGATACCTG
74515690 GTAAAAGGTATCGATACTTTTT
1 GTAAAAGGTATCGATACTTTTT
*
74515712 GTAAAA-GTATCGATATTTTTT
1 GTAAAAGGTATCGATACTTTTT
74515733 ATCCTGGAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (22 bp):
GTAAAAGGTATCGATACTTTTT
Found at i:74518326 original size:6 final size:7
Alignment explanation
Indices: 74518310--74518334 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
74518300 TTTATAGCCG
74518310 AAAAATA
1 AAAAATA
74518317 AAAAATA
1 AAAAATA
74518324 AAAAATA
1 AAAAATA
74518331 AAAA
1 AAAA
74518335 GAAATACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:74518575 original size:25 final size:23
Alignment explanation
Indices: 74518530--74518576 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
74518520 TATTTTATTT
*
74518530 TGGGCTAATAATTTGCTTGTAAG
1 TGGGCTAATAATTGGCTTGTAAG
74518553 TGGGCTAGATAATTAGGCTTGTAA
1 TGGGCTA-ATAATT-GGCTTGTAA
74518577 CAGCGACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 6 0.29
25 8 0.38
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.36
Consensus pattern (23 bp):
TGGGCTAATAATTGGCTTGTAAG
Found at i:74521793 original size:42 final size:41
Alignment explanation
Indices: 74521746--74521825 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 41
74521736 CCTTGGGGCC
74521746 AACCTGTGGGCAGA-TCTGACTTT-CTCACACGGCCGTGGGACT
1 AACCTGTGGGCA-ATTCTGACTTTGC-CACACGGCC-TGGGACT
74521788 AACCTGTGGGCAATTCTGACTTTGCCACACGGCCTGGG
1 AACCTGTGGGCAATTCTGACTTTGCCACACGGCCTGGG
74521826 CACACGCCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
41 5 0.14
42 30 0.83
43 1 0.03
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (41 bp):
AACCTGTGGGCAATTCTGACTTTGCCACACGGCCTGGGACT
Found at i:74523495 original size:21 final size:22
Alignment explanation
Indices: 74523427--74523490 Score: 110
Period size: 22 Copynumber: 2.9 Consensus size: 22
74523417 CAATCATTTA
74523427 ATCAATTTAAATCAAAATTTTT
1 ATCAATTTAAATCAAAATTTTT
74523449 ATCAATTTAAATCAAAATTTTT
1 ATCAATTTAAATCAAAATTTTT
* *
74523471 ATCAATTAAAATCATAATTT
1 ATCAATTTAAATCAAAATTT
74523491 CATCATTAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (22 bp):
ATCAATTTAAATCAAAATTTTT
Found at i:74523901 original size:3 final size:3
Alignment explanation
Indices: 74523893--74523941 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
74523883 TTGATAAAAT
74523893 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
74523941 A
1 A
74523942 GTAAATAACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:74524681 original size:188 final size:185
Alignment explanation
Indices: 74524293--74524731 Score: 567
Period size: 188 Copynumber: 2.3 Consensus size: 185
74524283 GGTCATTACA
* * *
74524293 TTTTTAGTACTTTTGCTGAC-AGTGCATCCTGCTTGGAGCGTTTTGTCGTCTAGAAACCTCAAAC
1 TTTTCAGTACTTTTGCTGACAAG-GCATCCTGCTTGGAGCGTTTT-TCCTCTAAAAACCTC-AAC
*
74524357 CCCACTATCCAGGGTATTTTTCACAAACTTCATCCCGGGAATCCCGAGATATTTTTTAGAACCAT
63 CCCACTATCCAGGGTATTTTTCACAAACCTCATCCCGGGAATCCCGAGATATTTTTTAGAACCAT
* * **
74524422 CTCATGAAATTTTTTTCACAGAAGAAACAGTATTGAAAAGGGCATTTAATTGGAAGCG
128 CTCATCAAATTTTTTTCACAGAAGAAACAGTACTGAAAAGGGCATCCAATTGGAAGCG
* * *
74524480 TTTTCAGTACTTTTACTAACAAGGCATCCTGCTTGGAACGTTTTTCCTCTAAAAACCTCAACCCC
1 TTTTCAGTACTTTTGCTGACAAGGCATCCTGCTTGGAGCGTTTTTCCTCTAAAAACCTCAACCCC
* * * *
74524545 TACTATTCGGGGTATTTTTCACAAACCTCATCCTGGGAATCCCGTGATATTTTTTTAGAACCATC
66 -ACTATCCAGGGTATTTTTCACAAACCTCATCCCGGGAATCCCGAGATA-TTTTTTAGAACCATC
* * ** * *
74524610 TCGTCAAATTTATTTTCACAGAAGCAGTAGTACTGAAAAGGGCGTCCAATTGGAAGTG
129 TCATCAAATTT-TTTTCACAGAAGAAACAGTACTGAAAAGGGCATCCAATTGGAAGCG
* ** * *
74524668 TTTTCAGTACTTTTGCTGATAATACATTCTACTTGGAGCGTTTTTCCTCTACAAAA-CTCAACCC
1 TTTTCAGTACTTTTGCTGACAAGGCATCCTGCTTGGAGCGTTTTTCCTCTA-AAAACCTCAACCC
74524732 ATCTCGTCAA
Statistics
Matches: 218, Mismatches: 29, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
185 6 0.03
186 56 0.26
187 61 0.28
188 91 0.42
189 4 0.02
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (185 bp):
TTTTCAGTACTTTTGCTGACAAGGCATCCTGCTTGGAGCGTTTTTCCTCTAAAAACCTCAACCCC
ACTATCCAGGGTATTTTTCACAAACCTCATCCCGGGAATCCCGAGATATTTTTTAGAACCATCTC
ATCAAATTTTTTTCACAGAAGAAACAGTACTGAAAAGGGCATCCAATTGGAAGCG
Found at i:74524770 original size:29 final size:29
Alignment explanation
Indices: 74524727--74524792 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
74524717 TACAAAACTC
* *
74524727 AACCCATCTCGTCAAAACTATTTCTTCAG
1 AACCCATCCCCTCAAAACTATTTCTTCAG
* *
74524756 AACCCATCCCCTCAAAACTATTTTTTCAT
1 AACCCATCCCCTCAAAACTATTTCTTCAG
*
74524785 AATCCATC
1 AACCCATC
74524793 TATACAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.32, C:0.33, G:0.03, T:0.32
Consensus pattern (29 bp):
AACCCATCCCCTCAAAACTATTTCTTCAG
Found at i:74529928 original size:41 final size:41
Alignment explanation
Indices: 74529506--74529928 Score: 555
Period size: 41 Copynumber: 10.3 Consensus size: 41
74529496 AGTCGTGAAA
** * *
74529506 TAGCGGCGTTTTCAGAAAAATGCCGCCAAAAGTCTGAGAAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * *
74529547 TAGCTGCGTTTTT-CAAGAAACGCCGCCAAAAGTCTGAGAAT
1 TAGCGGCGTTTTTGGAA-AAACGCCGCCAAAAGTCTGAGCAT
* * ** *
74529588 TCGCGGCATTTTTCCAAAAATGCCGCCAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
*
74529629 TAGCGGCATTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * *
74529670 TAGCGGCGTTGTTGGAAAAGCGCCGCTAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * * *
74529711 TAGCGGCGTTGTTGGAAAAACGCCGCTAAAAGTTTGAGAAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* *
74529752 TAGCGGCGTTTTT-CAGAAAACGCCGCCAAAA-TACTTAGCAT
1 TAGCGGCGTTTTTGGA-AAAACGCCGCCAAAAGT-CTGAGCAT
* *
74529793 TAGCGGCGTTTTTGGGAAAACGCCGCCAAAAGTCTGAGTAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
*
74529834 TAGCGGCGTTTTTGGGAAAACGCCGCCAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* *
74529875 TAGCGGCGTTTTTGAAAAAACGCCGCCGAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
74529916 TAGCGGCGTTTTT
1 TAGCGGCGTTTTT
74529929 TATTCGCGGC
Statistics
Matches: 342, Mismatches: 34, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
40 4 0.01
41 334 0.98
42 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (41 bp):
TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
Found at i:74529965 original size:57 final size:57
Alignment explanation
Indices: 74529877--74529985 Score: 191
Period size: 57 Copynumber: 1.9 Consensus size: 57
74529867 CTGAGCATTA
* *
74529877 GCGGCGTTTTTGAAAAAACGCCGCCGAAAGTCTGAGCATTAGCGGCGTTTTTTATTC
1 GCGGCGTTTTTGAAAAAACGCCGCCAAAAGTCTAAGCATTAGCGGCGTTTTTTATTC
*
74529934 GCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTAAGCATTAGCGGCGTTTTT
1 GCGGCGTTTTTGAAAAAACGCCGCCAAAAGTCTAAGCATTAGCGGCGTTTTT
74529986 GGAGAAACGC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (57 bp):
GCGGCGTTTTTGAAAAAACGCCGCCAAAAGTCTAAGCATTAGCGGCGTTTTTTATTC
Found at i:74530228 original size:22 final size:22
Alignment explanation
Indices: 74530201--74530276 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
74530191 TTTAGCGGTA
74530201 TTAAGGGTTTATGGGTTTAGGT
1 TTAAGGGTTTATGGGTTTAGGT
* * *
74530223 TTAAGGGTTCAT-GCTTTATGT
1 TTAAGGGTTTATGGGTTTAGGT
**
74530244 TTTTGTGGTTTA-GGGTTTAAGGGT
1 TTAAG-GGTTTATGGGTTT-A-GGT
74530268 TTAAGGGTT
1 TTAAGGGTT
74530277 AGTGGTTAGG
Statistics
Matches: 40, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
21 10 0.25
22 20 0.50
23 5 0.12
24 5 0.12
ACGTcount: A:0.17, C:0.03, G:0.33, T:0.47
Consensus pattern (22 bp):
TTAAGGGTTTATGGGTTTAGGT
Found at i:74531572 original size:22 final size:22
Alignment explanation
Indices: 74531547--74531601 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
74531537 TATTCAGAAT
74531547 TTAGGGTTTAAT-GTTTATAAGG
1 TTAGGGTTTAATGGTTTA-AAGG
* *
74531569 TTAGGGGTTT-ATGGTTTAGAGT
1 TTA-GGGTTTAATGGTTTAAAGG
74531591 TTAGGGTTTAA
1 TTAGGGTTTAA
74531602 GATTTAGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 6 0.21
22 11 0.39
23 11 0.39
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (22 bp):
TTAGGGTTTAATGGTTTAAAGG
Found at i:74531584 original size:7 final size:7
Alignment explanation
Indices: 74531573--74531618 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
74531563 ATAAGGTTAG
74531573 GGGTTTA
1 GGGTTTA
*
74531580 TGGTTTA
1 GGGTTTA
*
74531587 GAGTTTA
1 GGGTTTA
74531594 GGGTTTA
1 GGGTTTA
* *
74531601 AGATTTA
1 GGGTTTA
74531608 GGGTTTA
1 GGGTTTA
74531615 GGGT
1 GGGT
74531619 CTGATTTTGT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Found at i:74531599 original size:21 final size:21
Alignment explanation
Indices: 74531546--74531618 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
74531536 GTATTCAGAA
*
74531546 TTTAGGGTTTAAT-GTTTATAAG
1 TTTAGGGTTT-ATGGTTTA-GAG
*
74531568 GTTAGGGGTTTATGGTTTAGAG
1 TTTA-GGGTTTATGGTTTAGAG
* * *
74531590 TTTAGGGTTTAAGATTTAGGG
1 TTTAGGGTTTATGGTTTAGAG
74531611 TTTAGGGT
1 TTTAGGGT
74531619 CTGATTTTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
21 22 0.51
22 10 0.23
23 11 0.26
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.45
Consensus pattern (21 bp):
TTTAGGGTTTATGGTTTAGAG
Found at i:74533045 original size:24 final size:26
Alignment explanation
Indices: 74533018--74533072 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 26
74533008 AATTTTTTTA
*
74533018 ATTAAT-CGAAATTTTT-TATCTAAT
1 ATTAATCCGAAATTTTTATATATAAT
* *
74533042 ATT-ATCCTAAATTTTTATATATTAT
1 ATTAATCCGAAATTTTTATATATAAT
74533067 ATTAAT
1 ATTAAT
74533073 TTAATTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 2 0.08
24 12 0.48
25 9 0.36
26 2 0.08
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (26 bp):
ATTAATCCGAAATTTTTATATATAAT
Found at i:74535018 original size:9 final size:9
Alignment explanation
Indices: 74534977--74535113 Score: 112
Period size: 9 Copynumber: 14.6 Consensus size: 9
74534967 ATTGATCATT
*
74534977 ACTTAAATA
1 ACTTACATA
*
74534986 AGTTACATA
1 ACTTACATA
* *
74534995 ACTCACGTA
1 ACTTACATA
74535004 ACTTACATA
1 ACTTACATA
*
74535013 ATTTACATAACA
1 ACTTACAT---A
*
74535025 ACCTACATA
1 ACTTACATA
74535034 ACTTACATA
1 ACTTACATA
74535043 ACTTACATA
1 ACTTACATA
* *
74535052 ATTTATATA
1 ACTTACATA
*
74535061 ACTCACATA
1 ACTTACATA
* *
74535070 ACGTATATAACA
1 AC-T-TA-CATA
74535082 ACTTACATA
1 ACTTACATA
*
74535091 ACTCACATA
1 ACTTACATA
74535100 ACTTACATA
1 ACTTACATA
74535109 ACTTA
1 ACTTA
74535114 ACTAATACAT
Statistics
Matches: 99, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
9 83 0.84
10 3 0.03
11 2 0.02
12 11 0.11
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:74535051 original size:57 final size:57
Alignment explanation
Indices: 74534977--74535111 Score: 162
Period size: 57 Copynumber: 2.4 Consensus size: 57
74534967 ATTGATCATT
* * * * **
74534977 ACTTAAATAAGTTACATAACTCACGTAACTTACATAATTTACATAACAACCTACATA
1 ACTTACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACCTACATA
* * * * *
74535034 ACTTACATAACTTACATAATTTATATAACTCACATAACGTATATAACAACTTACATA
1 ACTTACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACCTACATA
*
74535091 ACTCACATAACTTACATAACT
1 ACTTACATAACTTACATAACT
74535112 TAACTAATAC
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.31
Consensus pattern (57 bp):
ACTTACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACCTACATA
Found at i:74535069 original size:48 final size:48
Alignment explanation
Indices: 74534982--74535111 Score: 145
Period size: 48 Copynumber: 2.7 Consensus size: 48
74534972 TCATTACTTA
* * * * *
74534982 AATAAGTTACATAACTCACGTAACTTACATAATTTACATAAC-AACCT
1 AATAACTTACATAACTCACATAACTTACATAACTCACATAACGAACAT
* * * * *
74535029 ACATAACTTACATAACTTACATAATTTATATAACTCACATAACGTATAT
1 A-ATAACTTACATAACTCACATAACTTACATAACTCACATAACGAACAT
*
74535078 AACAACTTACATAACTCACATAACTTACATAACT
1 AATAACTTACATAACTCACATAACTTACATAACT
74535112 TAACTAATAC
Statistics
Matches: 67, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
47 1 0.01
48 63 0.94
49 3 0.04
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.31
Consensus pattern (48 bp):
AATAACTTACATAACTCACATAACTTACATAACTCACATAACGAACAT
Found at i:74540708 original size:21 final size:21
Alignment explanation
Indices: 74540683--74540741 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
74540673 TCTAGCCGAT
*
74540683 GCAGCAGAGAGGGAGGCAGCG
1 GCAGCAGCGAGGGAGGCAGCG
*
74540704 GCAGCAGCGAGGGAGGTAGCG
1 GCAGCAGCGAGGGAGGCAGCG
*
74540725 GCAGCAGCGAGAGAGGC
1 GCAGCAGCGAGGGAGGC
74540742 GGAGCAGAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.27, C:0.20, G:0.51, T:0.02
Consensus pattern (21 bp):
GCAGCAGCGAGGGAGGCAGCG
Found at i:74541126 original size:43 final size:43
Alignment explanation
Indices: 74541068--74541186 Score: 148
Period size: 44 Copynumber: 2.7 Consensus size: 43
74541058 CAATCTGTAA
* *
74541068 ATTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGGACTCTAC
1 ATTTGGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGGACTCTAC
* * *
74541111 ATTTGGCGGCATTTGTGGAGAAAGCGCCGCTAAAAGGTCTGTAC
1 ATTTGGCGGCGTTTGTGGAGAAAGCGCCGCT-AAAGGACTCTAC
* * * *
74541155 TTTTGGCGGCGTTTTTGGTGTAAGCGCCGCTA
1 ATTTGGCGGCGTTTGTGGAGAAAGCGCCGCTA
74541187 TAGGTCTGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 29 0.45
44 36 0.55
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (43 bp):
ATTTGGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGGACTCTAC
Found at i:74541162 original size:44 final size:42
Alignment explanation
Indices: 74541061--74541426 Score: 198
Period size: 43 Copynumber: 8.5 Consensus size: 42
74541051 ACGATTTCAA
* *
74541061 TCTGTAAATTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGG
1 TCTGTACATTTGGCGGCGTTTGT-GGGAAAGCGCCGCTAAAGG
* * *
74541104 ACTCTACATTTGGCGGCATTTGTGGAGAAAGCGCCGCTAAAAGG
1 TCTGTACATTTGGCGGCGTTTGTGG-GAAAGCGCCGCT-AAAGG
* * * *
74541148 TCTGTACTTTTGGCGGCGTTTTTGGTGTAAGCGCCGCTATAGG
1 TCTGTACATTTGGCGGCGTTTGTGG-GAAAGCGCCGCTAAAGG
* * * * * *
74541191 TCTGTAAATTTAGCGTCTTTTTTGGGCAAAAGCTCCGCTAAAGG
1 TCTGTACATTTGGCGGCGTTTGTGGG--AAAGCGCCGCTAAAGG
* * * ** *
74541235 TCTGTACTTTTAGCTGCGCTTT-TCCCAGAAA-CGCCGCGAAAGG
1 TCTGTACATTTGGCGGCG-TTTGT--GGGAAAGCGCCGCTAAAGG
** * * * *
74541278 TCTACACCTTTAGTGGCGTTTGTGGGTAAAACGCCGCTAAAGG
1 TCTGTACATTTGGCGGCGTTTGTGGG-AAAGCGCCGCTAAAGG
* * * * * * **
74541321 TATGTGCTTTTAGCGGTGTTTGTTTGCTAAGCGCCGCTAAAGG
1 TCTGTACATTTGGCGGCGTTTG-TGGGAAAGCGCCGCTAAAGG
* * * ** *
74541364 TCTATAC-TATTAGCGGCGTTTATGATAAAGTGCCGCTAAAGG
1 TCTGTACAT-TTGGCGGCGTTTGTGGGAAAGCGCCGCTAAAGG
* * * *
74541406 TATCTACTTTTAGCGGCGTTT
1 TCTGTACATTTGGCGGCGTTT
74541427 TCCGTTCAAA
Statistics
Matches: 249, Mismatches: 61, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
41 1 0.00
42 42 0.17
43 134 0.54
44 68 0.27
45 3 0.01
46 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (42 bp):
TCTGTACATTTGGCGGCGTTTGTGGGAAAGCGCCGCTAAAGG
Found at i:74541419 original size:42 final size:41
Alignment explanation
Indices: 74541309--74541426 Score: 128
Period size: 42 Copynumber: 2.8 Consensus size: 41
74541299 GTGGGTAAAA
* * * * *
74541309 CGCCGCTAAAGGTATGTGCTTTTAGCGGTGTTTGTTTGCTAAG
1 CGCCGCTAAAGGTATATACTTTTAGCGGCG-TT-TATGATAAG
* *
74541352 CGCCGCTAAAGGTCTATACTATTAGCGGCGTTTATGATAAAG
1 CGCCGCTAAAGGTATATACTTTTAGCGGCGTTTATGAT-AAG
* *
74541394 TGCCGCTAAAGGTATCTACTTTTAGCGGCGTTT
1 CGCCGCTAAAGGTATATACTTTTAGCGGCGTTT
74541427 TCCGTTCAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 4 0.06
42 34 0.54
43 25 0.40
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (41 bp):
CGCCGCTAAAGGTATATACTTTTAGCGGCGTTTATGATAAG
Found at i:74541420 original size:85 final size:86
Alignment explanation
Indices: 74541266--74541426 Score: 209
Period size: 85 Copynumber: 1.9 Consensus size: 86
74541256 TTCCCAGAAA
* * * * *
74541266 CGCCGCGAAAGGTCTACACCTTTAGTGGCGTTTGTGGGTAAAACGCCGCTAAAGGTATGTGCTTT
1 CGCCGCGAAAGGTCTACACCTTTAGCGGCGTTTATGGATAAAACGCCGCTAAAGGTATCTACTTT
*
74541331 TAGCGGTGTTTGTTTGCTAAG
66 TAGCGGCGTTTGTTTGCTAAG
* * **
74541352 CGCCGCTAAAGGTCTATA-CTATTAGCGGCGTTTAT-GATAAAGTGCCGCTAAAGGTATCTACTT
1 CGCCGCGAAAGGTCTACACCT-TTAGCGGCGTTTATGGATAAAACGCCGCTAAAGGTATCTACTT
74541415 TTAGCGGCGTTT
65 TTAGCGGCGTTT
74541427 TCCGTTCAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 36 0.56
86 28 0.44
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (86 bp):
CGCCGCGAAAGGTCTACACCTTTAGCGGCGTTTATGGATAAAACGCCGCTAAAGGTATCTACTTT
TAGCGGCGTTTGTTTGCTAAG
Found at i:74541441 original size:85 final size:85
Alignment explanation
Indices: 74541092--74541446 Score: 234
Period size: 87 Copynumber: 4.1 Consensus size: 85
74541082 GTGGGGAAAG
* * * * * *
74541092 CGCCGCTAAAGGACTCTACA--TTTGGCGGCATTTGTGGAGAAAGCGCCGCTAAAAGGTCTGTAC
1 CGCCGCTAAAGG--TCTACACCTTTAGCGGCGTTTATGGATAAAACGCCGCT-AAAGGTATGTAC
* ** * *
74541155 TTTTGGCGGCGTTTTTGGTGTAAG
63 TTTTAGCGGCGTTTTCCG-CTAAA
* ** ** * * * ** * *
74541179 CGCCGCTATAGGTCTGTAAATTTAGCGTCTTTTTTGGGCAAAAGCTCCGCTAAAGGTCTGTACTT
1 CGCCGCTAAAGGTCTACACCTTTAGCGGCGTTTATGGATAAAA-CGCCGCTAAAGGTATGTACTT
* *
74541244 TTAGCTGCGCTTTTCC-CAGAAA
65 TTAGCGGCG-TTTTCCGC-TAAA
* * * * *
74541266 CGCCGCGAAAGGTCTACACCTTTAGTGGCGTTTGTGGGTAAAACGCCGCTAAAGGTATGTGCTTT
1 CGCCGCTAAAGGTCTACACCTTTAGCGGCGTTTATGGATAAAACGCCGCTAAAGGTATGTACTTT
* ** *
74541331 TAGCGGTGTTTGTTTGCTAAG
66 TAGCGGCGTTT-TCCGCTAAA
* ** *
74541352 CGCCGCTAAAGGTCTATA-CTATTAGCGGCGTTTAT-GATAAAGTGCCGCTAAAGGTATCTACTT
1 CGCCGCTAAAGGTCTACACCT-TTAGCGGCGTTTATGGATAAAACGCCGCTAAAGGTATGTACTT
*
74541415 TTAGCGGCGTTTTCCGTTCAAA
65 TTAGCGGCGTTTTCCGCT-AAA
74541437 CGCCGCTAAA
1 CGCCGCTAAA
74541447 AGTGATGACT
Statistics
Matches: 207, Mismatches: 52, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
84 3 0.01
85 55 0.27
86 56 0.27
87 83 0.40
88 10 0.05
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (85 bp):
CGCCGCTAAAGGTCTACACCTTTAGCGGCGTTTATGGATAAAACGCCGCTAAAGGTATGTACTTT
TAGCGGCGTTTTCCGCTAAA
Found at i:74541467 original size:85 final size:86
Alignment explanation
Indices: 74541225--74541469 Score: 203
Period size: 85 Copynumber: 2.9 Consensus size: 86
74541215 GGCAAAAGCT
* * * * * * * * *
74541225 CCGCTAAAGGTCTGTACTTTTAGCTGCGCTTT-TCC-CAGAAACGCCGCGAAAGGTCTACACCTT
1 CCGCTAAAGGTATCTACTTTTAGCGGCG-TTTGTCCGC-TAAACGCCGCTAAAAGTCGATACTTT
* *
74541288 TAGTGGCGTTTGTGGGTAAAACG
64 TAGTGGCGTTTATGGATAAAACG
* * * ** * * * *
74541311 CCGCTAAAGGTATGTGCTTTTAGCGGTGTTTGTTTGCTAAGCGCCGCTAAAGGTCTATACTATTA
1 CCGCTAAAGGTATCTACTTTTAGCGGCGTTTGTCCGCTAAACGCCGCTAAAAGTCGATACTTTTA
* **
74541376 GCGGCGTTTAT-GATAAAGTG
66 GTGGCGTTTATGGATAAAACG
*
74541396 CCGCTAAAGGTATCTACTTTTAGCGGCGTTT-TCCGTTCAAACGCCGCTAAAAGT-GATGACTTT
1 CCGCTAAAGGTATCTACTTTTAGCGGCGTTTGTCCGCT-AAACGCCGCTAAAAGTCGAT-ACTTT
74541459 TAGTGGCGTTT
64 TAGTGGCGTTT
74541470 TTTTCACATA
Statistics
Matches: 127, Mismatches: 28, Indels: 9
0.77 0.17 0.05
Matches are distributed among these distances:
84 5 0.04
85 65 0.51
86 56 0.44
87 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (86 bp):
CCGCTAAAGGTATCTACTTTTAGCGGCGTTTGTCCGCTAAACGCCGCTAAAAGTCGATACTTTTA
GTGGCGTTTATGGATAAAACG
Found at i:74542410 original size:18 final size:18
Alignment explanation
Indices: 74542372--74542410 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
74542362 ATGAAGCATT
**
74542372 AAATTTTAAAATTAATCA
1 AAATTTTAAAATTAAGAA
*
74542390 AAATTTTTAAATTAAGAA
1 AAATTTTAAAATTAAGAA
74542408 AAA
1 AAA
74542411 AAGGCAAACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (18 bp):
AAATTTTAAAATTAAGAA
Found at i:74544427 original size:22 final size:24
Alignment explanation
Indices: 74544369--74544436 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
74544359 AGATATAAAA
* *
74544369 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
74544393 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
74544417 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
74544437 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:74544903 original size:16 final size:16
Alignment explanation
Indices: 74544865--74544903 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
74544855 TCCAAAAAGA
*
74544865 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
74544881 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
74544897 AATAACT
1 AAAAACT
74544904 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:74545098 original size:30 final size:30
Alignment explanation
Indices: 74545062--74545185 Score: 202
Period size: 30 Copynumber: 4.3 Consensus size: 30
74545052 AGGTACAAGT
*
74545062 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
74545092 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
74545122 ---GGT-GAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
74545148 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
74545178 GGTGGTGG
1 GGTGGTGG
74545186 CAAAGGCTAG
Statistics
Matches: 88, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
26 23 0.26
27 3 0.03
29 3 0.03
30 59 0.67
ACGTcount: A:0.19, C:0.06, G:0.50, T:0.24
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:74545145 original size:56 final size:56
Alignment explanation
Indices: 74545069--74545181 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
74545059 AGTGGTGGTG
74545069 GAGCAAGTGTGGCTAATGGAGTAGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGT
1 GAGCAAGTGTGGCTAATGGAGTAGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGT
* *
74545125 GAGCAAGTGTGGCTAGTGGAGTAGGTGGTGGAGCAAGTGTGGCTAGTGGAGTTGGT
1 GAGCAAGTGTGGCTAATGGAGTAGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGT
74545181 G
1 G
74545182 GTGGCAAAGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.21, C:0.07, G:0.48, T:0.24
Consensus pattern (56 bp):
GAGCAAGTGTGGCTAATGGAGTAGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGT
Found at i:74546517 original size:13 final size:13
Alignment explanation
Indices: 74546501--74546572 Score: 58
Period size: 13 Copynumber: 5.5 Consensus size: 13
74546491 TAAACTTTTT
74546501 AAAAGTACTTCTC
1 AAAAGTACTTCTC
* *
74546514 AAAA-TAATTTTTC
1 AAAAGT-ACTTCTC
74546527 AAAAGTACTTCTC
1 AAAAGTACTTCTC
*
74546540 AAAA-TAACTTTTC
1 AAAAGT-ACTTCTC
* * *
74546553 CACAGCACTTCTC
1 AAAAGTACTTCTC
74546566 AAAAGTA
1 AAAAGTA
74546573 ATGCTAAATT
Statistics
Matches: 43, Mismatches: 12, Indels: 8
0.68 0.19 0.13
Matches are distributed among these distances:
12 2 0.05
13 40 0.93
14 1 0.02
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.32
Consensus pattern (13 bp):
AAAAGTACTTCTC
Found at i:74546530 original size:26 final size:26
Alignment explanation
Indices: 74546496--74546574 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
74546486 TAAACTAAAC
74546496 TTTTT-AAAAGTACTTCTCAAAATAA
1 TTTTTCAAAAGTACTTCTCAAAATAA
74546521 TTTTTCAAAAGTACTTCTCAAAATAA
1 TTTTTCAAAAGTACTTCTCAAAATAA
* * * *
74546547 CTTTTCCACAGCACTTCTCAAAAGTAA
1 TTTTTCAAAAGTACTTCTCAAAA-TAA
74546574 T
1 T
74546575 GCTAAATTAG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 5 0.11
26 39 0.83
27 3 0.06
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.37
Consensus pattern (26 bp):
TTTTTCAAAAGTACTTCTCAAAATAA
Found at i:74548041 original size:12 final size:12
Alignment explanation
Indices: 74548024--74548057 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
74548014 TTCCCTTTAA
74548024 AATAGTAAAAAT
1 AATAGTAAAAAT
74548036 AATAGTAAAAAT
1 AATAGTAAAAAT
74548048 AATAGTAAAA
1 AATAGTAAAA
74548058 GGGAAGTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (12 bp):
AATAGTAAAAAT
Found at i:74548983 original size:10 final size:10
Alignment explanation
Indices: 74548964--74549023 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
74548954 TGAAATTCTA
74548964 AAAGATAAAT
1 AAAGATAAAT
74548974 ACAA-ATAAAT
1 A-AAGATAAAT
*
74548984 AAAGATAATT
1 AAAGATAAAT
74548994 AAAGATAAAT
1 AAAGATAAAT
74549004 AAAGATAAAT
1 AAAGATAAAT
74549014 GAAA-ATAAAT
1 -AAAGATAAAT
74549024 CCTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:74550617 original size:19 final size:19
Alignment explanation
Indices: 74550589--74550679 Score: 114
Period size: 19 Copynumber: 4.6 Consensus size: 19
74550579 ATAATAAAAT
*
74550589 AATAAGATAAAATAAATAA
1 AATAAAATAAAATAAATAA
74550608 AATAAAATAAAATAAATAA
1 AATAAAATAAAATAAATAA
74550627 AATAAAATAAAATAAAATAAA
1 AATAAAATAAAAT-AAAT-AA
74550648 AATAAAAATAAAAATAAA-AA
1 AAT-AAAAT-AAAATAAATAA
74550668 TAA-AAAATAAAA
1 -AATAAAATAAAA
74550680 AATAGGTTGC
Statistics
Matches: 66, Mismatches: 1, Indels: 11
0.85 0.01 0.14
Matches are distributed among these distances:
18 4 0.06
19 36 0.55
20 6 0.09
21 7 0.11
22 8 0.12
23 5 0.08
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.19
Consensus pattern (19 bp):
AATAAAATAAAATAAATAA
Found at i:74550622 original size:24 final size:23
Alignment explanation
Indices: 74550581--74550679 Score: 116
Period size: 24 Copynumber: 4.3 Consensus size: 23
74550571 AATAATAGAT
*
74550581 AATAAAAT--AATAAGATAAAATA
1 AATAAAATAAAATAAAATAAAA-A
74550603 AATAAAATAAAATAAAATAAATAA
1 AATAAAATAAAATAAAATAAA-AA
74550627 AATAAAATAAAATAAAATAAAAA
1 AATAAAATAAAATAAAATAAAAA
*
74550650 TA-AAAATAAAAATAAAA-ATAAAA
1 AATAAAAT-AAAATAAAATA-AAAA
74550673 AATAAAA
1 AATAAAA
74550680 AATAGGTTGC
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
22 14 0.21
23 17 0.25
24 36 0.53
25 1 0.01
ACGTcount: A:0.80, C:0.00, G:0.01, T:0.19
Consensus pattern (23 bp):
AATAAAATAAAATAAAATAAAAA
Found at i:74550679 original size:5 final size:5
Alignment explanation
Indices: 74550581--74550672 Score: 111
Period size: 5 Copynumber: 18.4 Consensus size: 5
74550571 AATAATAGAT
*
74550581 AATAA AAT-- AATAA GATAA AAT-A AATAA AATAA AATAA AAT-A AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
74550627 AATAA AATAA AATAA AATAAA AATAAA AATAAA AATAAA AATAA AA
1 AATAA AATAA AATAA AAT-AA AAT-AA AAT-AA AAT-AA AATAA AA
74550673 AATAAAAAAT
Statistics
Matches: 80, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
3 3 0.04
4 8 0.10
5 46 0.57
6 23 0.29
ACGTcount: A:0.79, C:0.00, G:0.01, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:74550680 original size:19 final size:19
Alignment explanation
Indices: 74550569--74550672 Score: 90
Period size: 19 Copynumber: 5.2 Consensus size: 19
74550559 TTAATATATG
74550569 AAAATAATAGATAATAAAATAAT
1 AAAATAA-A-ATAAT-AAA-AAT
*
74550592 AAGATAAAATAA-ATAAAAT
1 AAAATAAAATAATA-AAAAT
74550611 AAAATAAAATAA-ATAAAAT
1 AAAATAAAATAATA-AAAAT
74550630 AAAATAAAATAAAATAAAAAT
1 AAAATAAAAT--AATAAAAAT
74550651 AAAA-ATAAA-AATAAAAAT
1 AAAATA-AAATAATAAAAAT
74550669 AAAA
1 AAAA
74550673 AATAAAAAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 15
0.81 0.02 0.16
Matches are distributed among these distances:
18 13 0.18
19 32 0.43
20 3 0.04
21 18 0.24
22 2 0.03
23 6 0.08
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (19 bp):
AAAATAAAATAATAAAAAT
Found at i:74556106 original size:12 final size:12
Alignment explanation
Indices: 74556089--74556121 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
74556079 TTCCCTGTAA
74556089 AATAGTAAAAAT
1 AATAGTAAAAAT
74556101 AATAGTAAAAAT
1 AATAGTAAAAAT
74556113 AATAGTAAA
1 AATAGTAAA
74556122 GGGGAAGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (12 bp):
AATAGTAAAAAT
Found at i:74557050 original size:10 final size:10
Alignment explanation
Indices: 74557031--74557090 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
74557021 TGAAATTCTA
74557031 AAAGATAAAT
1 AAAGATAAAT
74557041 ACAA-ATAAAT
1 A-AAGATAAAT
*
74557051 AAAGATAATT
1 AAAGATAAAT
74557061 AAAGATAAAT
1 AAAGATAAAT
74557071 AAAGATAAAT
1 AAAGATAAAT
74557081 GAAA-ATAAAT
1 -AAAGATAAAT
74557091 CCTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:74567144 original size:21 final size:18
Alignment explanation
Indices: 74567095--74567130 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
74567085 CTTAGATTAG
74567095 AGTTTATTTTTCTGCATT
1 AGTTTATTTTTCTGCATT
74567113 AGTTTATTTTTCTGCATT
1 AGTTTATTTTTCTGCATT
74567131 TACTTCTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.11, T:0.61
Consensus pattern (18 bp):
AGTTTATTTTTCTGCATT
Found at i:74571102 original size:133 final size:130
Alignment explanation
Indices: 74570723--74571114 Score: 471
Period size: 133 Copynumber: 2.9 Consensus size: 130
74570713 AGATTTTTAA
* * * * * *
74570723 CTTCGATCTACTCCGCTGGAACTTTAGGGAGAATAGATCTGCTAATTTCAGTTTGCTCCACTGCA
1 CTTCGATCTACTCCACTGCAACTTCAGGGAGAA-AGATCTGCT-ATTTCAGTCTACTCCACTACA
* * * * * * *
74570788 ACTTTAGGGATATTAGACTTGGGTAATTTTATCCTGCTTTATTGTAACTTCAGAGAGATAAGGAT
64 AC-TTAGGGAGATAAGACTT-GCT-ACTTTAACCCGCTCTATTGTAACTTCAGAGAGATAAGGAT
74570853 TGTGG
126 TGTGG
* * *
74570858 CTTCGAT-TGCTCCACTGCAACTTCAGGGAGACAAGATCTACTATCTTCAGTCTTCTCCACTACA
1 CTTCGATCTACTCCACTGCAACTTCAGGGAGA-AAGATCTGCTAT-TTCAGTCTACTCCACTACA
*
74570922 ACTTAGGGAGATAATACTTGCTACTTTAACCCGCTCTATTGTAACTTCAGAGAGATAAGGATTGT
64 ACTTAGGGAGATAAGACTTGCTACTTTAACCCGCTCTATTGTAACTTCAGAGAGATAAGGATTGT
74570987 GG
129 GG
* ** *
74570989 TTTCGATCTTTTCCACTGTAACTTCAGGGAGATAAGATCTGCTACTTTCAGTCTACTCCACTACA
1 CTTCGATCTACTCCACTGCAACTTCAGGGAGA-AAGATCTGCTA-TTTCAGTCTACTCCACTACA
* * *
74571054 TCTTCAGGGAGATAAGACTTGCTACTTTAACCCGCTCTACTATAACTTCAGAGAGATAAGG
64 ACTT-AGGGAGATAAGACTTGCTACTTTAACCCGCTCTATTGTAACTTCAGAGAGATAAGG
74571115 TTTGCTAAGA
Statistics
Matches: 225, Mismatches: 27, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
131 47 0.21
132 54 0.24
133 70 0.31
134 46 0.20
135 8 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (130 bp):
CTTCGATCTACTCCACTGCAACTTCAGGGAGAAAGATCTGCTATTTCAGTCTACTCCACTACAAC
TTAGGGAGATAAGACTTGCTACTTTAACCCGCTCTATTGTAACTTCAGAGAGATAAGGATTGTGG
Found at i:74571120 original size:44 final size:45
Alignment explanation
Indices: 74570912--74571121 Score: 133
Period size: 44 Copynumber: 4.8 Consensus size: 45
74570902 CTTCAGTCTT
* * * *
74570912 CTCCACTACAACTT-AGGGAGATAATACTTGCTACTTT-AACCCG
1 CTCCACTATAACTTCAGAGAGATAAGATTTGCTACTTTCAACCCG
* * * ** * * **
74570955 CTCTATTGTAACTTCAGAGAGATAAGGA-TTG-TGGTTTCGATCTT
1 CTCCACTATAACTTCAGAGAGATAA-GATTTGCTACTTTCAACCCG
* * * * ** **
74570999 TTCCACTGTAACTTCAGGGAGATAAGATCTGCTACTTTCAGTCTA
1 CTCCACTATAACTTCAGAGAGATAAGATTTGCTACTTTCAACCCG
* * * *
74571044 CTCCACTACATCTTCAGGGAGATAAGACTTGCTACTTT-AACCCG
1 CTCCACTATAACTTCAGAGAGATAAGATTTGCTACTTTCAACCCG
* *
74571088 CTCTACTATAACTTCAGAGAGATAAGGTTTGCTA
1 CTCCACTATAACTTCAGAGAGATAAGATTTGCTA
74571122 AGATGACTTA
Statistics
Matches: 124, Mismatches: 38, Indels: 9
0.73 0.22 0.05
Matches are distributed among these distances:
43 16 0.13
44 67 0.54
45 41 0.33
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (45 bp):
CTCCACTATAACTTCAGAGAGATAAGATTTGCTACTTTCAACCCG
Found at i:74576772 original size:19 final size:19
Alignment explanation
Indices: 74576748--74576786 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
74576738 GCATTTATCG
74576748 TTATCAACCGACCCTCTGA
1 TTATCAACCGACCCTCTGA
*
74576767 TTATCAACCGACTCTCTGA
1 TTATCAACCGACCCTCTGA
74576786 T
1 T
74576787 ACTAACTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.33, G:0.10, T:0.31
Consensus pattern (19 bp):
TTATCAACCGACCCTCTGA
Found at i:74586874 original size:11 final size:11
Alignment explanation
Indices: 74586860--74586901 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
74586850 TAAATATTAC
74586860 TTTATTAATAT
1 TTTATTAATAT
*
74586871 TTTAATGAGATAT
1 TTT-ATTA-ATAT
74586884 TTTATTAATAT
1 TTTATTAATAT
74586895 TTTATTA
1 TTTATTA
74586902 TAAATAGCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 14 0.52
12 6 0.22
13 7 0.26
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TTTATTAATAT
Found at i:74587964 original size:44 final size:44
Alignment explanation
Indices: 74587908--74587996 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
74587898 CTCACGATAT
74587908 AAATAATTTAGTGACTATGACTCAAGTGGACAGCTTTGATATAA
1 AAATAATTTAGTGACTATGACTCAAGTGGACAGCTTTGATATAA
* *
74587952 AAATAATTTAGTGACTATGACTTAAGTTGACAGCTTTGATATAA
1 AAATAATTTAGTGACTATGACTCAAGTGGACAGCTTTGATATAA
74587996 A
1 A
74587997 CATATAAGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (44 bp):
AAATAATTTAGTGACTATGACTCAAGTGGACAGCTTTGATATAA
Found at i:74588130 original size:2 final size:2
Alignment explanation
Indices: 74588125--74588158 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
74588115 AAATATATGA
74588125 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74588159 GGTAGATGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74593641 original size:201 final size:201
Alignment explanation
Indices: 74593296--74593694 Score: 755
Period size: 201 Copynumber: 2.0 Consensus size: 201
74593286 AGAGTTATGA
* *
74593296 TGTATCTTCAGAGAATAAAATATTACATGCTCACATATTGGAGGTTTGATAAGTTAAAGATATCA
1 TGTATCTTCAGAGAATAAAATATTACATGCTCACATATTGGAGGTCTGATAAATTAAAGATATCA
*
74593361 AGTATACAAACTTCGATTTTGATGGAATATGGATTCAAGATTTTGTCACTATGGTGTAAATTGTG
66 AGTATACAAACTTCGATTTTGATGGAATATGGATTCAAGATTTTGTCACTAAGGTGTAAATTGTG
74593426 GAAACAAATTACAGCCTTTTATTCCAATAAATATAGGAGCACATCAAAGTCAAAGCACATAGACT
131 GAAACAAATTACAGCCTTTTATTCCAATAAATATAGGAGCACATCAAAGTCAAAGCACATAGACT
74593491 TTAAAT
196 TTAAAT
74593497 TGTATCTTCAGAGAATAAAATATTACATGCTCACATATTGGAGGTCTGATAAATTAAAGATATC-
1 TGTATCTTCAGAGAATAAAATATTACATGCTCACATATTGGAGGTCTGATAAATTAAAGATATCA
74593561 AGATATACAAACTTCGATTTTGATGGAATATGGATTCAAGATTTTGTCACTAAGGTGTAAATTGT
66 AG-TATACAAACTTCGATTTTGATGGAATATGGATTCAAGATTTTGTCACTAAGGTGTAAATTGT
74593626 GGAAACAAATTACAGCCTTTTATTCCAATAAATATAGGAGCACATCAAAGTCAAAGCACATAGAC
130 GGAAACAAATTACAGCCTTTTATTCCAATAAATATAGGAGCACATCAAAGTCAAAGCACATAGAC
74593691 TTTA
195 TTTA
74593695 CATTCTTGGT
Statistics
Matches: 194, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
200 2 0.01
201 192 0.99
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (201 bp):
TGTATCTTCAGAGAATAAAATATTACATGCTCACATATTGGAGGTCTGATAAATTAAAGATATCA
AGTATACAAACTTCGATTTTGATGGAATATGGATTCAAGATTTTGTCACTAAGGTGTAAATTGTG
GAAACAAATTACAGCCTTTTATTCCAATAAATATAGGAGCACATCAAAGTCAAAGCACATAGACT
TTAAAT
Found at i:74597574 original size:41 final size:41
Alignment explanation
Indices: 74597506--74597643 Score: 224
Period size: 41 Copynumber: 3.4 Consensus size: 41
74597496 CGTTTTACCA
* **
74597506 AAAACACCGCT-AAAATCGGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
*
74597546 AAAGCGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
74597587 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
*
74597628 AAAACACCGCTAAAAA
1 AAAACGCCGCTAAAAA
74597644 GTTTAGGGTT
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 9 0.10
41 82 0.90
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
Found at i:74597741 original size:21 final size:21
Alignment explanation
Indices: 74597717--74597764 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
74597707 GGTTTATGTA
74597717 TTATGGTTTAAGGGTT-GGGG
1 TTATGGTTTAAGGGTTAGGGG
*
74597737 TTTATGATTTAAGGGTTAGGGG
1 -TTATGGTTTAAGGGTTAGGGG
74597759 TTATGG
1 TTATGG
74597765 GGTTAATACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.42
Consensus pattern (21 bp):
TTATGGTTTAAGGGTTAGGGG
Found at i:74598018 original size:21 final size:21
Alignment explanation
Indices: 74597992--74598035 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
74597982 TTATGGTTAG
* *
74597992 GGGATATAGTTTAGGGTTTAA
1 GGGATATACTTTAGGGATTAA
74598013 GGGATATACTTTAGGGATTAA
1 GGGATATACTTTAGGGATTAA
74598034 GG
1 GG
74598036 TTATAGGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.34, T:0.34
Consensus pattern (21 bp):
GGGATATACTTTAGGGATTAA
Found at i:74598370 original size:15 final size:15
Alignment explanation
Indices: 74598350--74598395 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
74598340 TTCCCCGATT
74598350 TCCCCCAACTTCTTC
1 TCCCCCAACTTCTTC
*
74598365 TCCCCCAA---ATT-
1 TCCCCCAACTTCTTC
74598376 TCCCCCAACTTCTTC
1 TCCCCCAACTTCTTC
74598391 TCCCC
1 TCCCC
74598396 TAAAATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
11 8 0.32
12 2 0.08
14 2 0.08
15 13 0.52
ACGTcount: A:0.15, C:0.54, G:0.00, T:0.30
Consensus pattern (15 bp):
TCCCCCAACTTCTTC
Found at i:74601628 original size:183 final size:183
Alignment explanation
Indices: 74601320--74601871 Score: 1023
Period size: 183 Copynumber: 3.0 Consensus size: 183
74601310 GATATAGTTC
* * * *
74601320 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
*
74601385 ACTATTGGTTCAACTAAAGCTGCCATTTAATATTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTAAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
74601450 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
74601503 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
74601568 ACTATTGGTTCAACTAAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTAAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
74601633 GTTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
*
74601686 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTACA
1 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
*
74601751 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTAAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
74601816 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
74601869 CAT
1 CAT
74601872 CTGTTCTAGG
Statistics
Matches: 359, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 359 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (183 bp):
CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTAAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:74602092 original size:15 final size:15
Alignment explanation
Indices: 74602072--74602100 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74602062 GGAGTAGACC
74602072 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
74602087 AGGTACGTTTTATT
1 AGGTACGTTTTATT
74602101 TCAAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:74602603 original size:30 final size:30
Alignment explanation
Indices: 74602568--74602681 Score: 93
Period size: 30 Copynumber: 3.4 Consensus size: 30
74602558 ACTACGATTC
74602568 TTTTTTATATTATTATATTCAAATTACTAT
1 TTTTTTATATTATTATATTCAAATTACTAT
* * *
74602598 TTTTTTATATTAATAATGTTTGATTTTAATATTTACGATTCT
1 TTTTTTATA-T--T-AT-TAT-A-TTCAA-A-TTAC---TAT
74602640 TTTTTTATATTATTATATTCAAATTACTAT
1 TTTTTTATATTATTATATTCAAATTACTAT
74602670 TTTTTTATATTA
1 TTTTTTATATTA
74602682 ATAATGTTTG
Statistics
Matches: 66, Mismatches: 6, Indels: 24
0.69 0.06 0.25
Matches are distributed among these distances:
30 23 0.35
31 1 0.02
33 5 0.08
34 3 0.05
35 6 0.09
36 2 0.03
37 6 0.09
38 3 0.05
39 5 0.08
41 1 0.02
42 11 0.17
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTTTTATATTATTATATTCAAATTACTAT
Found at i:74602648 original size:72 final size:71
Alignment explanation
Indices: 74602560--74602722 Score: 292
Period size: 72 Copynumber: 2.3 Consensus size: 71
74602550 AAAATTAAAC
74602560 TACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
1 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
74602624 TAATATT
66 TAATA-T
74602631 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
1 TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
**
74602696 TTTTAT
66 TAATAT
74602702 TACGATTCTTTTTTTATATTA
1 TACGATTCTTTTTTTATATTA
74602723 ATATGTACTT
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
71 30 0.34
72 59 0.66
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (71 bp):
TACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTGATTT
TAATAT
Found at i:74602868 original size:15 final size:15
Alignment explanation
Indices: 74602850--74602879 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
74602840 ATAATTTTTA
74602850 TAAATATTATTTAAT
1 TAAATATTATTTAAT
74602865 TAAATATTATTTAAT
1 TAAATATTATTTAAT
74602880 CCCGCTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAAATATTATTTAAT
Found at i:74603024 original size:9 final size:9
Alignment explanation
Indices: 74602985--74603357 Score: 113
Period size: 9 Copynumber: 41.4 Consensus size: 9
74602975 ATTTGATATC
*
74602985 ATAATTTAT
1 ATAACTTAT
*
74602994 ATAACTTAC
1 ATAACTTAT
* * *
74603003 AAAACGTAC
1 ATAACTTAT
74603012 ATAACTTAT
1 ATAACTTAT
*
74603021 ATAACTTAG
1 ATAACTTAT
*
74603030 ATAA-ATAT
1 ATAACTTAT
*
74603038 ATAACTTAC
1 ATAACTTAT
*
74603047 ATAACTTAC
1 ATAACTTAT
74603056 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
74603069 ATATTTATAT
1 ATAACT-TAT
* *
74603079 CATAATTTAC
1 -ATAACTTAT
74603089 ATAACTTAT
1 ATAACTTAT
*
74603098 ATAACTTAG
1 ATAACTTAT
*
74603107 ATAA-ATAT
1 ATAACTTAT
* *
74603115 ATAATTTAC
1 ATAACTTAT
*
74603124 ATAA-ATAT
1 ATAACTTAT
* *
74603132 ATATCATAT
1 ATAACTTAT
*
74603141 CATAACTTAC
1 -ATAACTTAT
*
74603151 ATAACTTAC
1 ATAACTTAT
*
74603160 ATAAATATAT
1 ATAACT-TAT
* *
74603170 TTGA--TAT
1 ATAACTTAT
*
74603177 CATAATTTAT
1 -ATAACTTAT
*
74603187 ATAACTTAC
1 ATAACTTAT
* * *
74603196 AAAACGTAC
1 ATAACTTAT
74603205 ATAACTTAT
1 ATAACTTAT
*
74603214 ATAACTTAG
1 ATAACTTAT
*
74603223 ATAA-ATAT
1 ATAACTTAT
*
74603231 ATAACTTAC
1 ATAACTTAT
*
74603240 ATAACTTAC
1 ATAACTTAT
74603249 ATAA--TAT
1 ATAACTTAT
* *
74603256 TTAA-ATAT
1 ATAACTTAT
**
74603264 AT-TTTATAT
1 ATAACT-TAT
* *
74603273 CATAATTTAC
1 -ATAACTTAT
*
74603283 ATAACTTAC
1 ATAACTTAT
74603292 ATAACTTAT
1 ATAACTTAT
*
74603301 ATAACTTAG
1 ATAACTTAT
*
74603310 ATAA-ATAT
1 ATAACTTAT
* *
74603318 ATAATTTAC
1 ATAACTTAT
*
74603327 ATAA-ATAT
1 ATAACTTAT
* *
74603335 ATATCATAT
1 ATAACTTAT
*
74603344 CATAACTTAC
1 -ATAACTTAT
74603354 ATAA
1 ATAA
74603358 TACTTAAATA
Statistics
Matches: 273, Mismatches: 68, Indels: 46
0.71 0.18 0.12
Matches are distributed among these distances:
7 8 0.03
8 40 0.15
9 180 0.66
10 28 0.10
11 12 0.04
12 2 0.01
13 3 0.01
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (9 bp):
ATAACTTAT
Found at i:74603040 original size:17 final size:18
Alignment explanation
Indices: 74603009--74603337 Score: 103
Period size: 17 Copynumber: 17.8 Consensus size: 18
74602999 TTACAAAACG
74603009 TACATAACT-TATATAACT
1 TACATAA-TATATATAACT
*
74603027 TAGATAA-ATATATAACT
1 TACATAATATATATAACT
*
74603044 TACATAACT-TACATAATACT
1 TACATAA-TATATAT-A-ACT
* *
74603064 TAAATATATTTATATCATAATT
1 TACATA-A--TATAT-ATAACT
74603086 TACATAACT-TATATAACT
1 TACATAA-TATATATAACT
* *
74603104 TAGATAA-ATATATAATT
1 TACATAATATATATAACT
* *
74603121 TACATAA-ATATATATCA
1 TACATAATATATATAACT
*
74603138 TATCATAACT-TACATAACT
1 TA-CATAA-TATATATAACT
* *
74603157 TACATAAATATATTTGA--
1 TACAT-AATATATATAACT
*
74603174 TATCATAATTTATATAACT
1 TA-CATAATATATATAACT
* ** *
74603193 TACAAAACGTACATAACT
1 TACATAATATATATAACT
* * *
74603211 TATATAACT-TAGATAA-A
1 TACATAA-TATATATAACT
* *
74603228 TATATAACT-TACATAACT
1 TACATAA-TATATATAACT
**
74603246 TACATAATATTTAAATATATTTT
1 TACATAATA--T--ATATA-ACT
* *
74603269 ATATCATAATTTACATAACT
1 -TA-CATAATATATATAACT
74603289 TACATAACT-TATATAACT
1 TACATAA-TATATATAACT
* *
74603307 TAGATAA-ATATATAATT
1 TACATAATATATATAACT
74603324 TACATAA-ATATATA
1 TACATAATATATATA
74603338 TCATATCATA
Statistics
Matches: 233, Mismatches: 48, Indels: 61
0.68 0.14 0.18
Matches are distributed among these distances:
17 85 0.36
18 81 0.35
19 23 0.10
20 11 0.05
21 6 0.03
22 12 0.05
23 5 0.02
24 4 0.02
25 6 0.03
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (18 bp):
TACATAATATATATAACT
Found at i:74603041 original size:44 final size:44
Alignment explanation
Indices: 74602991--74603330 Score: 256
Period size: 44 Copynumber: 7.4 Consensus size: 44
74602981 TATCATAATT
* *
74602991 TATATAACTTACAAAACGTACATAACTTATATAACTTAGATAAA
1 TATATAACTTACATAACTTACATAACTTATATAACTTAGATAAA
* * *
74603035 TATATAACTTACATAACTTACATAATACTTAAATATATTTATATCATAA
1 TATATAACTTACATAACTTACAT-A-ACTTATATA-ACTTAGAT-A-AA
* * * * * *
74603084 TTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA
1 --TATATAACTTACATAACTTACATAACTTATATAACTTAGATAAA
* * * *
74603129 TATATATCATATCATAACTTACATAACTTACATAAATATATTTGATATCATAA
1 TATATAACTTA-CATAACTTACATAACTT--AT--ATA-ACTT-AGAT-A-AA
* *
74603182 TTTATATAACTTACAAAACGTACATAACTTATATAACTTAGATAAA
1 --TATATAACTTACATAACTTACATAACTTATATAACTTAGATAAA
* * * **
74603228 TATATAACTTACATAACTTACATAA--TATTTAAATATA-TTTTA
1 TATATAACTTACATAACTTACATAACTTATATAACT-TAGATAAA
*
74603270 TATCATAATTTACATAACTTACATAACTTATATAACTTAGATAAA
1 TAT-ATAACTTACATAACTTACATAACTTATATAACTTAGATAAA
*
74603315 TATATAATTTACATAA
1 TATATAACTTACATAA
74603331 ATATATATCA
Statistics
Matches: 235, Mismatches: 37, Indels: 48
0.73 0.12 0.15
Matches are distributed among these distances:
42 12 0.05
43 31 0.13
44 71 0.30
45 16 0.07
46 11 0.05
47 16 0.07
48 9 0.04
49 9 0.04
50 8 0.03
51 23 0.10
52 3 0.01
53 2 0.01
54 15 0.06
55 9 0.04
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (44 bp):
TATATAACTTACATAACTTACATAACTTATATAACTTAGATAAA
Found at i:74603305 original size:87 final size:89
Alignment explanation
Indices: 74603137--74603330 Score: 270
Period size: 87 Copynumber: 2.2 Consensus size: 89
74603127 AATATATATC
**
74603137 ATATCATAACTTACATAACTTACATAAATATATTTGATATCATAATTTATATAACTTACAAAACG
1 ATAT-ATAACTTACATAACTTACATAAATATATTAAATATCATAATTTATATAACTTACAAAACG
74603202 TACATAACTTATATAACTTAGATAA
65 TACATAACTTATATAACTTAGATAA
* * *
74603227 ATATATAACTTACATAACTTACAT-AATAT-TTAAATAT-AT-TTTATATCATAATTTACATAAC
1 ATATATAACTTACATAACTTACATAAATATATTAAATATCATAATT-TAT-ATAACTTACAAAAC
*
74603288 TTACATAACTTATATAACTTAGATAA
64 GTACATAACTTATATAACTTAGATAA
*
74603314 ATATATAATTTACATAA
1 ATATATAACTTACATAA
74603331 ATATATATCA
Statistics
Matches: 95, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
85 2 0.02
86 5 0.05
87 59 0.62
88 5 0.05
89 20 0.21
90 4 0.04
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (89 bp):
ATATATAACTTACATAACTTACATAAATATATTAAATATCATAATTTATATAACTTACAAAACGT
ACATAACTTATATAACTTAGATAA
Found at i:74603349 original size:44 final size:45
Alignment explanation
Indices: 74603137--74603357 Score: 134
Period size: 44 Copynumber: 5.0 Consensus size: 45
74603127 AATATATATC
* * ****
74603137 ATATCATAACTTACATAACTTACATAA-ATATATTTGATATCATAA
1 ATATCATAATTTACATAACATACATAACATATATAACTTA-CATAA
* * * * * *
74603182 TTTAT-ATAACTTACAAAACGTACATAACTTATATAACTTAGATAA
1 -ATATCATAATTTACATAACATACATAACATATATAACTTACATAA
* * * * * **
74603227 ATAT-ATAACTTACATAACTTACAT-A-ATATTTAAATATA-TTTT
1 ATATCATAATTTACATAACATACATAACATATATAACT-TACATAA
* * *
74603269 ATATCATAATTTACATAACTTACATAACTTATATAACTTAGATAA
1 ATATCATAATTTACATAACATACATAACATATATAACTTACATAA
* *
74603314 ATAT-ATAATTTACATAA-ATATATATCATATCATAACTTACATAA
1 ATATCATAATTTACATAACATACATAACATAT-ATAACTTACATAA
74603358 TACTTAAATA
Statistics
Matches: 138, Mismatches: 30, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
42 12 0.09
43 31 0.22
44 49 0.36
45 36 0.26
46 10 0.07
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (45 bp):
ATATCATAATTTACATAACATACATAACATATATAACTTACATAA
Found at i:74609306 original size:31 final size:31
Alignment explanation
Indices: 74609260--74609326 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
74609250 TGGTTGTATT
* *
74609260 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
74609291 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
74609322 TTTTA
1 TTTTA
74609327 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:74609496 original size:42 final size:42
Alignment explanation
Indices: 74609401--74609569 Score: 293
Period size: 43 Copynumber: 4.0 Consensus size: 42
74609391 GTAAAAAAAG
*
74609401 CGCCGCTAAACGCCTTGACCTTTAGCGGCGCTTTTCCCCCAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT-CCCCAAA
74609444 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCCAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCCAAA
74609486 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCC-CAAA
* *
74609529 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTTCCCAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCCAA
74609570 TAAACGCCAA
Statistics
Matches: 122, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
42 48 0.39
43 74 0.61
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.25
Consensus pattern (42 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCCAAA
Found at i:74609544 original size:85 final size:85
Alignment explanation
Indices: 74609401--74609569 Score: 302
Period size: 85 Copynumber: 2.0 Consensus size: 85
74609391 GTAAAAAAAG
* *
74609401 CGCCGCTAAACGCCTTGACCTTTAGCGGCGCTTTTCCCCCAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
74609466 TAGCGGCGCTTTTCCCCAAA
66 TAGCGGCGCTTTTCCCCAAA
74609486 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
* *
74609551 TAGCGGCGTTTTTTCCCAA
66 TAGCGGCGCTTTTCCCCAA
74609570 TAAACGCCAA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.25
Consensus pattern (85 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
TAGCGGCGCTTTTCCCCAAA
Found at i:74610009 original size:19 final size:18
Alignment explanation
Indices: 74609967--74610011 Score: 60
Period size: 16 Copynumber: 2.6 Consensus size: 18
74609957 TTATGTTTTG
74609967 TCATGTA-TTTTTTTATA
1 TCATGTATTTTTTTTATA
74609984 TCA--TATTTTTTTTATTA
1 TCATGTATTTTTTTTA-TA
74610001 TCATGTATTTT
1 TCATGTATTTT
74610012 GTTAACTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 2 0.08
16 8 0.33
17 8 0.33
19 6 0.25
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (18 bp):
TCATGTATTTTTTTTATA
Found at i:74610011 original size:17 final size:17
Alignment explanation
Indices: 74609967--74610011 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
74609957 TTATGTTTTG
74609967 TCATGTATTTTTTTATA
1 TCATGTATTTTTTTATA
*
74609984 TCATAT-TTTTTTTATTA
1 TCATGTATTTTTTTA-TA
74610001 TCATGTATTTT
1 TCATGTATTTT
74610012 GTTAACTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 8 0.33
17 12 0.50
18 4 0.17
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (17 bp):
TCATGTATTTTTTTATA
Found at i:74610794 original size:132 final size:133
Alignment explanation
Indices: 74610557--74610848 Score: 489
Period size: 132 Copynumber: 2.2 Consensus size: 133
74610547 TAAGTATTCA
* * * * *
74610557 TTTAAAAATTCTCTAAAACGAAGACGA-GATTCGATATTTGGCAATTCGCGGAATAGTTCCCTAA
1 TTTAAAAATTCTTTAAAACGAAGGCGATGATGCGATATTTGGCAATTCGCGGAATAATGCCCTAA
*
74610621 CGTGTTGGGTTGCAATTTCGCGGTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATG
66 CGTGTTGGGTTGCAATCTCGCGGTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATG
*
74610686 CCT
131 CAT
*
74610689 TTTAAAAATTCTTTTAAACGAAGGCGATG-TGCGATATTTGGCAATTCGCGGAATAATGCCCTAA
1 TTTAAAAATTCTTTAAAACGAAGGCGATGATGCGATATTTGGCAATTCGCGGAATAATGCCCTAA
*
74610753 CGTGTTGGGTTGCAATCTCGCGGTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATG
66 CGTGTTGGGTTGCAATCTCGCGGTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATG
74610818 CAT
131 CAT
74610821 TTTAAAAATTCTTTAAAACGAAGGCGAT
1 TTTAAAAATTCTTTAAAACGAAGGCGAT
74610849 ACTTGATGTT
Statistics
Matches: 149, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
132 148 0.99
133 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (133 bp):
TTTAAAAATTCTTTAAAACGAAGGCGATGATGCGATATTTGGCAATTCGCGGAATAATGCCCTAA
CGTGTTGGGTTGCAATCTCGCGGTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATG
CAT
Found at i:74610938 original size:71 final size:71
Alignment explanation
Indices: 74610822--74610965 Score: 270
Period size: 71 Copynumber: 2.0 Consensus size: 71
74610812 TTCATGCATT
*
74610822 TTAAAAATTCTTTAAAACGAAGGCGATACTTGATGTTTGGCAATTCAAGAATTGTGCCCTATCGT
1 TTAAAAATTCTTTAAAACGAAGGCAATACTTGATGTTTGGCAATTCAAGAATTGTGCCCTATCGT
74610887 GCTGGG
66 GCTGGG
*
74610893 TTAAAAATTCTTTTAAACGAAGGCAATACTTGATGTTTGGCAATTCAAGAATTGTGCCCTATCGT
1 TTAAAAATTCTTTAAAACGAAGGCAATACTTGATGTTTGGCAATTCAAGAATTGTGCCCTATCGT
74610958 GCTGGG
66 GCTGGG
74610964 TT
1 TT
74610966 GCGATTTCTC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (71 bp):
TTAAAAATTCTTTAAAACGAAGGCAATACTTGATGTTTGGCAATTCAAGAATTGTGCCCTATCGT
GCTGGG
Found at i:74611901 original size:19 final size:19
Alignment explanation
Indices: 74611877--74611932 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
74611867 AGAAAAAAAC
74611877 CTCAAATATCGATA-TTTT
1 CTCAAATATCGATACTTTT
*
74611895 GCTCAAATATCTATACTTTT
1 -CTCAAATATCGATACTTTT
*
74611915 TTCAAAGTATCGATACTT
1 CTCAAA-TATCGATACTT
74611933 GACCTTTGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.43
Consensus pattern (19 bp):
CTCAAATATCGATACTTTT
Found at i:74618553 original size:9 final size:9
Alignment explanation
Indices: 74618539--74618563 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
74618529 AAAATTACGA
74618539 TTTTAATAT
1 TTTTAATAT
74618548 TTTTAATAT
1 TTTTAATAT
74618557 TTTTAAT
1 TTTTAAT
74618564 TAAGTTGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTAATAT
Found at i:74622680 original size:29 final size:29
Alignment explanation
Indices: 74622631--74622703 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 29
74622621 TACCCATAAT
* *
74622631 TATATATATTGTATAGAATAAAACCATGCA
1 TATATATA-TATATAAAATAAAACCATGCA
*
74622661 TATATATATATATAAAATAAAGCCATGCA
1 TATATATATATATAAAATAAAACCATGCA
74622690 TATATATTATATAT
1 TATATA-TATATAT
74622704 GTATAATTAC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
29 24 0.62
30 15 0.38
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.37
Consensus pattern (29 bp):
TATATATATATATAAAATAAAACCATGCA
Found at i:74625397 original size:22 final size:21
Alignment explanation
Indices: 74625372--74625489 Score: 110
Period size: 22 Copynumber: 5.4 Consensus size: 21
74625362 TGCTAAATAG
*
74625372 AGAGTACCATAGTATTGAACAA
1 AGAGTACCA-AGTACTGAACAA
* *
74625394 AGAGTCCCAAAGAACTGAACAA
1 AGAGTACC-AAGTACTGAACAA
* *
74625416 AGAGTATCAAAGTACTGAACAG
1 AGAGTA-CCAAGTACTGAACAA
* *
74625438 AGAGTATCGAAGTACTGAACAG
1 AGAGTA-CCAAGTACTGAACAA
* *
74625460 AGAGTATCGAAGTACTTAACAA
1 AGAGTA-CCAAGTACTGAACAA
74625482 AGAGTACC
1 AGAGTACC
74625490 TATGTTTTTT
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
21 1 0.01
22 80 0.96
23 2 0.02
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.18
Consensus pattern (21 bp):
AGAGTACCAAGTACTGAACAA
Found at i:74626178 original size:30 final size:27
Alignment explanation
Indices: 74626137--74626199 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 27
74626127 TAGCCCAAAA
74626137 AAAAAACTAGTTTTGTTTTCAAAAATAGCAC
1 AAAAAACTAGTTTT-TTTT-AAAAA-A-CAC
*
74626168 AAAAAA-TAGTTTTTTTTAAAGAACAC
1 AAAAAACTAGTTTTTTTTAAAAAACAC
74626194 AAAAAA
1 AAAAAA
74626200 AAATAGTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 9 0.29
27 1 0.03
28 4 0.13
29 4 0.13
30 7 0.23
31 6 0.19
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAAAACTAGTTTTTTTTAAAAAACAC
Found at i:74626201 original size:29 final size:31
Alignment explanation
Indices: 74626134--74626207 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 31
74626124 CTTTAGCCCA
*
74626134 AAAAAAAAACTAGTTTTGTTTTCAAAAATAGC
1 AAAAAAAAA-TAGTTTTGTTTTCAAAAACAGC
*
74626166 -ACAAAAAATAGTTTT-TTTT-AAAGAACA-C
1 AAAAAAAAATAGTTTTGTTTTCAAA-AACAGC
74626194 AAAAAAAAATAGTT
1 AAAAAAAAATAGTT
74626208 GTTGAGTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 4 0.11
29 19 0.51
30 7 0.19
31 7 0.19
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.30
Consensus pattern (31 bp):
AAAAAAAAATAGTTTTGTTTTCAAAAACAGC
Found at i:74628404 original size:21 final size:20
Alignment explanation
Indices: 74628380--74628425 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
74628370 CGAAATGCAA
74628380 TCAACCTAACA-CGAATTAAAT
1 TCAACCTAA-ATCG-ATTAAAT
*
74628401 TCAAGCTAAATCGATTAAAT
1 TCAACCTAAATCGATTAAAT
74628421 T-AACC
1 TCAACC
74628426 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.26
Consensus pattern (20 bp):
TCAACCTAAATCGATTAAAT
Found at i:74631360 original size:21 final size:21
Alignment explanation
Indices: 74631334--74631377 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
74631324 AAAAGTAACA
74631334 TTAAATTTCTATAGATTTGGG
1 TTAAATTTCTATAGATTTGGG
74631355 TTAAATTTCTATAGATTTGGG
1 TTAAATTTCTATAGATTTGGG
74631376 TT
1 TT
74631378 TATGAGGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.05, G:0.18, T:0.50
Consensus pattern (21 bp):
TTAAATTTCTATAGATTTGGG
Found at i:74632050 original size:46 final size:46
Alignment explanation
Indices: 74631954--74632134 Score: 168
Period size: 46 Copynumber: 3.9 Consensus size: 46
74631944 CTATTCGTTA
* * *** *
74631954 TGTAGGTTCAACCTTAACGGGTGACCAGGCACTATTATCCGATTTT
1 TGTAGGTTCAACCTTAACGGGTGACTAGACACTATTATTTTATTTG
* * *
74632000 TGTAGGTTTAACCTTAACGAGTGACTAGACACTATTATTTTATTCG
1 TGTAGGTTCAACCTTAACGGGTGACTAGACACTATTATTTTATTTG
* * *
74632046 TGTAGGTTCAACCCTT-ACGTGTGACTAGAAACTATGATTCATTATTTG
1 TGTAGGTTCAA-CCTTAACGGGTGACTAGACACTATTATT--TTATTTG
* ** *
74632094 TGTAGGTTTAACCCAAACGGGT-AATCAGACACTATTATTTT
1 TGTAGGTTCAACCTTAACGGGTGACT-AGACACTATTATTTT
74632135 CACCTGTGTA
Statistics
Matches: 109, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
46 69 0.63
47 8 0.07
48 32 0.29
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (46 bp):
TGTAGGTTCAACCTTAACGGGTGACTAGACACTATTATTTTATTTG
Found at i:74632454 original size:2 final size:2
Alignment explanation
Indices: 74632449--74632492 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
74632439 AAACTATATA
74632449 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
74632491 TG
1 TG
74632493 GATTTGGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:74635053 original size:41 final size:41
Alignment explanation
Indices: 74635008--74635091 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
74634998 TGAAAGTATA
74635008 GATAGTGCGAAATAAGAGTAGTCCACATTATGAACAAATGC
1 GATAGTGCGAAATAAGAGTAGTCCACATTATGAACAAATGC
74635049 GATAGTGCGAAATAAGAGTAGTCCACATTATGAACAAATGC
1 GATAGTGCGAAATAAGAGTAGTCCACATTATGAACAAATGC
74635090 GA
1 GA
74635092 CAACATTAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (41 bp):
GATAGTGCGAAATAAGAGTAGTCCACATTATGAACAAATGC
Found at i:74636358 original size:21 final size:21
Alignment explanation
Indices: 74636328--74636389 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
74636318 GTTATAATGA
*
74636328 CCACACGGGCGTGTTGCCCTT
1 CCACATGGGCGTGTTGCCCTT
* *
74636349 CCACATGGGCATGTTGCCTTT
1 CCACATGGGCGTGTTGCCCTT
74636370 CCACATGGGCGTGTTGCCCT
1 CCACATGGGCGTGTTGCCCT
74636390 GTTTCAAGAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.11, C:0.34, G:0.27, T:0.27
Consensus pattern (21 bp):
CCACATGGGCGTGTTGCCCTT
Found at i:74645371 original size:5 final size:5
Alignment explanation
Indices: 74645361--74645392 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
74645351 TTCTGTGTTC
74645361 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
74645393 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:74645375 original size:9 final size:9
Alignment explanation
Indices: 74645361--74645391 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
74645351 TTCTGTGTTC
74645361 TTTATTTTA
1 TTTATTTTA
74645370 TTTATTTTA
1 TTTATTTTA
74645379 TTTTATTTTA
1 -TTTATTTTA
74645389 TTT
1 TTT
74645392 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:74650819 original size:43 final size:43
Alignment explanation
Indices: 74650766--74650850 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
74650756 TTATGTAAAA
*
74650766 AAACACCGCTAAAGAACATGACCTTTAGCGGCTCTTTCCCCAC
1 AAACACCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
*
74650809 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCA
1 AAACACCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCA
74650851 AAAATGCTAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.29, C:0.34, G:0.16, T:0.20
Consensus pattern (43 bp):
AAACACCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
Found at i:74650864 original size:43 final size:43
Alignment explanation
Indices: 74650764--74650865 Score: 141
Period size: 43 Copynumber: 2.4 Consensus size: 43
74650754 ATTTATGTAA
* * *
74650764 AAAAACACCGCTAAAGAACATGACCTTTAGCGGCTCTTTCCCC
1 AAAAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTCCCC
* *
74650807 ACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCC
1 AAAAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTCCCC
* *
74650850 AAAAATGCTACTAAAG
1 AAAAACGCCACTAAAG
74650866 GTCATTTTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (43 bp):
AAAAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTCCCC
Found at i:74654491 original size:14 final size:14
Alignment explanation
Indices: 74654472--74654501 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
74654462 AAATCAAAGG
74654472 GATGGAGATTTAGA
1 GATGGAGATTTAGA
74654486 GATGGAGATTTAGA
1 GATGGAGATTTAGA
74654500 GA
1 GA
74654502 AGCAGGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.27
Consensus pattern (14 bp):
GATGGAGATTTAGA
Found at i:74654813 original size:33 final size:33
Alignment explanation
Indices: 74654745--74654813 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
74654735 AGTTTTGTTT
* *
74654745 AAAGTAAAATGATTTTTTGCAGCGTTTTTATCA
1 AAAGTAAAATGATTTTTTGCAGCGTTTTAAACA
74654778 AAAGTAAAATGATTTTTTGCAGCGTTTTAAACA
1 AAAGTAAAATGATTTTTTGCAGCGTTTTAAACA
74654811 AAA
1 AAA
74654814 CGTCACCGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (33 bp):
AAAGTAAAATGATTTTTTGCAGCGTTTTAAACA
Found at i:74655453 original size:14 final size:14
Alignment explanation
Indices: 74655432--74655494 Score: 74
Period size: 14 Copynumber: 4.4 Consensus size: 14
74655422 GATTTAGACC
74655432 TAAACCCCTAACCTT
1 TAAA-CCCTAACCTT
* *
74655447 TAACCCCTAACCCT
1 TAAACCCTAACCTT
*
74655461 TAAACCTTAAACC-T
1 TAAACCCT-AACCTT
74655475 TAAACCCTAACCTT
1 TAAACCCTAACCTT
74655489 TAAACC
1 TAAACC
74655495 ATAAATCATA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.10
14 30 0.73
15 7 0.17
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAACCCTAACCTT
Found at i:74655486 original size:28 final size:28
Alignment explanation
Indices: 74655441--74655526 Score: 82
Period size: 28 Copynumber: 3.0 Consensus size: 28
74655431 CTAAACCCCT
* *
74655441 AACCTTTAACCCCTAACCCTTAAACCTTA
1 AACC-TTAAACCCTAACCCTTAAACCATA
*
74655470 AACCTTAAACCCTAACCTTTAAACCATA
1 AACCTTAAACCCTAACCCTTAAACCATA
* * * * * *
74655498 AATCATAAACCATAAACCATAAATCATA
1 AACCTTAAACCCTAACCCTTAAACCATA
74655526 A
1 A
74655527 TCCATATACC
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 43 0.91
29 4 0.09
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.24
Consensus pattern (28 bp):
AACCTTAAACCCTAACCCTTAAACCATA
Found at i:74655493 original size:21 final size:20
Alignment explanation
Indices: 74655424--74655499 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 20
74655414 ATTTGAGGGA
*
74655424 TTTAGACCTAAACCCCTAACC
1 TTTAAACCTAAA-CCCTAACC
*
74655445 TTTAACCCCT-AACCCTTAAACC
1 TTTAA-ACCTAAACCC-T-AACC
74655467 -TTAAACCTTAAACCCTAACC
1 TTTAAACC-TAAACCCTAACC
74655487 TTTAAACCATAAA
1 TTTAAACC-TAAA
74655500 TCATAAACCA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
20 9 0.20
21 24 0.53
22 12 0.27
ACGTcount: A:0.38, C:0.34, G:0.01, T:0.26
Consensus pattern (20 bp):
TTTAAACCTAAACCCTAACC
Found at i:74655499 original size:7 final size:7
Alignment explanation
Indices: 74655461--74655607 Score: 84
Period size: 7 Copynumber: 20.7 Consensus size: 7
74655451 CCCTAACCCT
*
74655461 TAAACCT
1 TAAACCA
*
74655468 TAAACCT
1 TAAACCA
*
74655475 TAAACCC
1 TAAACCA
*
74655482 T-AACCTT
1 TAAACC-A
74655489 TAAACCA
1 TAAACCA
*
74655496 TAAATCA
1 TAAACCA
74655503 TAAACCA
1 TAAACCA
74655510 TAAACCA
1 TAAACCA
*
74655517 TAAATCA
1 TAAACCA
*
74655524 TAATCCA
1 TAAACCA
*
74655531 TATACCCA
1 TA-AACCA
*
74655539 TAATCCA
1 TAAACCA
*
74655546 TAAACCT
1 TAAACCA
74655553 TAAA--A
1 TAAACCA
*
74655558 TAGTAACTCC
1 TA--AAC-CA
*
74655568 TAAACCT
1 TAAACCA
*
74655575 TAAACCC
1 TAAACCA
*
74655582 TAAATCA
1 TAAACCA
* *
74655589 TATACCC
1 TAAACCA
74655596 TAAACCA
1 TAAACCA
74655603 TAAAC
1 TAAAC
74655608 ACTAAACTGT
Statistics
Matches: 109, Mismatches: 23, Indels: 16
0.74 0.16 0.11
Matches are distributed among these distances:
5 2 0.02
6 4 0.04
7 88 0.81
8 13 0.12
10 2 0.02
ACGTcount: A:0.47, C:0.28, G:0.01, T:0.24
Consensus pattern (7 bp):
TAAACCA
Found at i:74655513 original size:21 final size:21
Alignment explanation
Indices: 74655489--74655614 Score: 103
Period size: 21 Copynumber: 5.9 Consensus size: 21
74655479 CCCTAACCTT
74655489 TAAACCATAAATCATAAACCA
1 TAAACCATAAATCATAAACCA
*
74655510 TAAACCATAAATCATAATCCA
1 TAAACCATAAATCATAAACCA
* *
74655531 TATACCCAT-AATCCATAAACCT
1 TA-AACCATAAAT-CATAAACCA
** * * *
74655553 TAAAATAGTAACTCCTAAACCT
1 TAAACCA-TAAATCATAAACCA
* * *
74655575 TAAACCCTAAATCATATACCC
1 TAAACCATAAATCATAAACCA
74655596 TAAACCATAAA-CACTAAAC
1 TAAACCATAAATCA-TAAAC
74655615 TGTAATGATA
Statistics
Matches: 82, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
20 2 0.02
21 51 0.62
22 27 0.33
23 2 0.02
ACGTcount: A:0.49, C:0.27, G:0.01, T:0.23
Consensus pattern (21 bp):
TAAACCATAAATCATAAACCA
Found at i:74655585 original size:14 final size:14
Alignment explanation
Indices: 74655451--74655614 Score: 100
Period size: 14 Copynumber: 11.6 Consensus size: 14
74655441 AACCTTTAAC
* *
74655451 CCCTAACCCTTAAA
1 CCCTAAACCATAAA
* *
74655465 CCTTAAACCTTAAA
1 CCCTAAACCATAAA
*
74655479 CCCT-AACCTTTAAA
1 CCCTAAACC-ATAAA
* *
74655493 CCATAAATCATAAA
1 CCCTAAACCATAAA
*
74655507 CCATAAACCATAAA
1 CCCTAAACCATAAA
* * * *
74655521 TCATAATCCATATA
1 CCCTAAACCATAAA
*
74655535 CCCATAATCCATAAA
1 CCC-TAAACCATAAA
*
74655550 CCTTAAA--ATAGTAA
1 CCCTAAACCATA--AA
*
74655564 CTCCTAAACCTTAAA
1 C-CCTAAACCATAAA
* *
74655579 CCCTAAATCATATA
1 CCCTAAACCATAAA
74655593 CCCTAAACCATAAA
1 CCCTAAACCATAAA
*
74655607 CACTAAAC
1 CCCTAAAC
74655615 TGTAATGATA
Statistics
Matches: 119, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
12 3 0.03
13 4 0.03
14 87 0.73
15 23 0.19
17 2 0.02
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.24
Consensus pattern (14 bp):
CCCTAAACCATAAA
Found at i:74656085 original size:41 final size:40
Alignment explanation
Indices: 74656037--74656183 Score: 186
Period size: 40 Copynumber: 3.6 Consensus size: 40
74656027 TTTTTACATC
* * * * *
74656037 GTTTTTTATAAAGCACTGCTAATGCTCGATCTATAGTGGT
1 GTTTTTTAAAAAGCGCCGCTAATGCTAGACCTATAGTGGT
* * *
74656077 GTTTTTTTAAGAATCGCCGCTAATGGTAGACCTATAGTGGT
1 G-TTTTTTAAAAAGCGCCGCTAATGCTAGACCTATAGTGGT
* * *
74656118 GTTTTTTAAAAAGCGCCGCTAATGTTAGACCTATAGCGGC
1 GTTTTTTAAAAAGCGCCGCTAATGCTAGACCTATAGTGGT
74656158 GTTTTTTAAAAAGCGCCGCTAATGCT
1 GTTTTTTAAAAAGCGCCGCTAATGCT
74656184 CGATTTACAT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 60 0.65
41 32 0.35
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (40 bp):
GTTTTTTAAAAAGCGCCGCTAATGCTAGACCTATAGTGGT
Found at i:74661532 original size:60 final size:60
Alignment explanation
Indices: 74661454--74661590 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 60
74661444 CAGTGTTAAC
* *
74661454 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGT-TCAGA-TATAT
* *** *
74661515 TGGGCCTAGCCCATATCAGTATCAATCTGGGTTGTAGCCCTATTACAAGTTGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTCAGATATAT
*
74661575 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
74661591 TAACATAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
60 49 0.74
61 14 0.21
62 3 0.05
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTCAGATATAT
Found at i:74661968 original size:27 final size:26
Alignment explanation
Indices: 74661910--74661971 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
74661900 CAAAATTAAC
* * **
74661910 CCTAGGGGTATAACGGTCTTTTTGTA
1 CCTAGGGGTAAAACGGTATTTTCATA
74661936 CCTAGGGGTAAAACGGTAATTTTCATA
1 CCTAGGGGTAAAACGGT-ATTTTCATA
*
74661963 CTTAGGGGT
1 CCTAGGGGT
74661972 GTTTTAGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 16 0.53
27 14 0.47
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (26 bp):
CCTAGGGGTAAAACGGTATTTTCATA
Found at i:74665700 original size:19 final size:20
Alignment explanation
Indices: 74665663--74665700 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
74665653 ATAAGGTGGT
74665663 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
74665683 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
74665701 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:74672988 original size:93 final size:92
Alignment explanation
Indices: 74672830--74672999 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
74672820 GGATGGTTGA
* *
74672830 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
74672895 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* * *
74672922 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
74672987 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
74673000 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 24 0.33
93 48 0.67
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74672998 original size:46 final size:46
Alignment explanation
Indices: 74672834--74673004 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
74672824 GGTTGAGCAT
* *
74672834 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * *
74672879 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
* *
74672924 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
74672972 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74673005 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 24 0.23
46 38 0.36
47 28 0.26
48 5 0.05
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:74677761 original size:2 final size:2
Alignment explanation
Indices: 74677754--74677782 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
74677744 TGTTTTTATC
74677754 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
74677783 ACTATACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:74678498 original size:54 final size:54
Alignment explanation
Indices: 74678350--74678483 Score: 232
Period size: 54 Copynumber: 2.5 Consensus size: 54
74678340 ATATACGCTA
* * *
74678350 ACCGTGTAACTAACTGTGCCCGTGTAATATAATGTCACACGACTATATGGATAG
1 ACCGTGTAACTCATTGTGCCCGTGTAATATAAGGTCACACGACTATATGGATAG
74678404 ACCGTGTAACTCATTGTGCCCGTGTAATATAAGGTCACACGACTATATGGATAG
1 ACCGTGTAACTCATTGTGCCCGTGTAATATAAGGTCACACGACTATATGGATAG
*
74678458 ACCGTGTAACTCATTGTGCCTGTGTA
1 ACCGTGTAACTCATTGTGCCCGTGTA
74678484 GCTTAGGGTC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (54 bp):
ACCGTGTAACTCATTGTGCCCGTGTAATATAAGGTCACACGACTATATGGATAG
Found at i:74680226 original size:39 final size:39
Alignment explanation
Indices: 74680172--74680312 Score: 210
Period size: 39 Copynumber: 3.6 Consensus size: 39
74680162 AACATGTTTT
* *
74680172 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTACA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
74680211 TGAGTATTGTGATATATGCTTAAATGTTATGTAATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
74680250 TGAGTATTGTGATATATGCTTAAATTTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * * *
74680289 TGTGTAATGTAATATATGTTTAAA
1 TGAGTATTGTGATATATGCTTAAA
74680313 AGTGAATATG
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.32, C:0.03, G:0.19, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:74691379 original size:21 final size:21
Alignment explanation
Indices: 74691346--74691424 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 21
74691336 AAAAAGCTCG
* * *
74691346 TAAGAGCTGAACAGAAACCCA
1 TAAGAGTTAAACAGAAACTCA
* *
74691367 TAAGGGTTAAACAGAAGCTCA
1 TAAGAGTTAAACAGAAACTCA
*
74691388 AAAGAGTTAAAC-GAAAACTCA
1 TAAGAGTTAAACAG-AAACTCA
*
74691409 TATGAGTTAAACAGAA
1 TAAGAGTTAAACAGAA
74691425 GCTCGTGAGA
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
20 1 0.02
21 44 0.96
22 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.16
Consensus pattern (21 bp):
TAAGAGTTAAACAGAAACTCA
Found at i:74691385 original size:42 final size:41
Alignment explanation
Indices: 74691295--74691445 Score: 144
Period size: 42 Copynumber: 3.6 Consensus size: 41
74691285 AACGCTGAAT
*
74691295 AGAAGCTCATAAGAGCTAAACAGAAACACATAAGGGTTGGGAA-
1 AGAAGCTCATAAGAGCTAAAC-GAAACACATAAGGGTT--AAAC
* * *
74691338 A-AAGCTCGTAAGAGCTGAACAGAAACCCATAAGGGTTAAAC
1 AGAAGCTCATAAGAGCTAAAC-GAAACACATAAGGGTTAAAC
* * * * *
74691379 AGAAGCTCAAAAGAGTTAAACGAAAACTCATATGAGTTAAAC
1 AGAAGCTCATAAGAGCTAAACG-AAACACATAAGGGTTAAAC
* *
74691421 AGAAGCTCGTGAGAGCTAAACGAAA
1 AGAAGCTCATAAGAGCTAAACGAAA
74691446 AGTAAACATG
Statistics
Matches: 90, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
40 2 0.02
41 5 0.06
42 82 0.91
43 1 0.01
ACGTcount: A:0.46, C:0.16, G:0.23, T:0.15
Consensus pattern (41 bp):
AGAAGCTCATAAGAGCTAAACGAAACACATAAGGGTTAAAC
Found at i:74703860 original size:5 final size:5
Alignment explanation
Indices: 74703852--74703881 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
74703842 TAACCTGAAG
74703852 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
74703882 AGGCAAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:74710318 original size:31 final size:31
Alignment explanation
Indices: 74710269--74710344 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
74710259 ATTTAATGGT
* * *
74710269 AGAGTGATTAGAACTGATAACTTATCTAACG
1 AGAGTGACTAAAATTGATAACTTATCTAACG
*
74710300 AGAGTGACTAAAATTGATAACTTATCTAACT
1 AGAGTGACTAAAATTGATAACTTATCTAACG
* *
74710331 AAAGTAACTAAAAT
1 AGAGTGACTAAAAT
74710345 AACAATTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (31 bp):
AGAGTGACTAAAATTGATAACTTATCTAACG
Found at i:74714411 original size:25 final size:24
Alignment explanation
Indices: 74714354--74714412 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
74714344 TCTGTTTTAT
* *
74714354 TTTATTTATTATTTCATCATTTTC
1 TTTATTTATTATTTCATCATATTA
* *
74714378 TTTCCTTTATTATTGTTATCATATTA
1 TTT-ATTTATTATT-TCATCATATTA
74714404 TTTATTTAT
1 TTTATTTAT
74714413 CCATTTATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 3 0.11
25 14 0.50
26 11 0.39
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (24 bp):
TTTATTTATTATTTCATCATATTA
Found at i:74722269 original size:18 final size:18
Alignment explanation
Indices: 74722230--74722284 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
74722220 CTTGGCCCAT
*
74722230 TACAGTAACAGTAAATAG
1 TACAGTAACAGTAAACAG
*
74722248 TACAATAACAGTAAACCA-
1 TACAGTAACAGTAAA-CAG
*
74722266 TACAGTATCAGT-AACAG
1 TACAGTAACAGTAAACAG
74722283 TA
1 TA
74722285 TGCAGATCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
16 2 0.06
17 4 0.13
18 24 0.77
19 1 0.03
ACGTcount: A:0.49, C:0.16, G:0.13, T:0.22
Consensus pattern (18 bp):
TACAGTAACAGTAAACAG
Done.