Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 237 of 325
Found at i:74722663 original size:27 final size:27
Alignment explanation
Indices: 74722633--74722699 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
74722623 TAAGGCAAAT
*
74722633 CAGTCAGTTTATCTTACAGGGGTATTA
1 CAGTCAGTTTACCTTACAGGGGTATTA
* * *
74722660 CAGTCATTTTACCTTATAGGGGTATTT
1 CAGTCAGTTTACCTTACAGGGGTATTA
* *
74722687 CGGTCATTTTACC
1 CAGTCAGTTTACC
74722700 CTATAAGGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40
Consensus pattern (27 bp):
CAGTCAGTTTACCTTACAGGGGTATTA
Found at i:74722704 original size:27 final size:27
Alignment explanation
Indices: 74722650--74722724 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
74722640 TTTATCTTAC
* * *
74722650 AGGGGTATTACAGTCATTTTACCTTAT
1 AGGGGTATTTCGGTCATTTTACCCTAT
74722677 AGGGGTATTTCGGTCATTTTACCCTAT
1 AGGGGTATTTCGGTCATTTTACCCTAT
* * *
74722704 AAGGGTACTTCGGCCATTTTA
1 AGGGGTATTTCGGTCATTTTA
74722725 TCACATAAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTCGGTCATTTTACCCTAT
Found at i:74722732 original size:27 final size:27
Alignment explanation
Indices: 74722664--74722735 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
74722654 GTATTACAGT
* * *
74722664 CATTTTAC-CTTATAGGGGTATTTCGGT
1 CATTTTACAC-TATAAGGGTACTTCGGC
*
74722691 CATTTTACCCTATAAGGGTACTTCGGC
1 CATTTTACACTATAAGGGTACTTCGGC
74722718 CATTTTATCAC-ATAAGGG
1 CATTTTA-CACTATAAGGG
74722736 AAAAATAGTC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 36 0.92
28 3 0.08
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
CATTTTACACTATAAGGGTACTTCGGC
Found at i:74729066 original size:9 final size:10
Alignment explanation
Indices: 74729032--74729070 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
74729022 AATTGTCTAA
74729032 TTTTTGCTCCG
1 TTTTTGCT-CG
*
74729043 TTTTTGCTTG
1 TTTTTGCTCG
74729053 TTTTTGCTCG
1 TTTTTGCTCG
74729063 -TTTTGCTC
1 TTTTTGCTC
74729071 CCAAATGCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 8 0.31
10 10 0.38
11 8 0.31
ACGTcount: A:0.00, C:0.21, G:0.18, T:0.62
Consensus pattern (10 bp):
TTTTTGCTCG
Found at i:74732057 original size:58 final size:57
Alignment explanation
Indices: 74731989--74732101 Score: 165
Period size: 57 Copynumber: 2.0 Consensus size: 57
74731979 AAAAATGGTG
*
74731989 AAATGGAGAAATAGTAAA-CATTTGGAAATGATTAAGGTTTTCTCCAAAATGAAAATGA
1 AAATGGAGAAATA--AAATCATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATGA
** *
74732047 AAATGGAGAAATAAAATCATTTGGAAATGAATGTGGTTTTCTCCGAAATGAAAAT
1 AAATGGAGAAATAAAATCATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAAT
74732102 AACTTGAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
56 3 0.06
57 34 0.68
58 13 0.26
ACGTcount: A:0.45, C:0.07, G:0.19, T:0.28
Consensus pattern (57 bp):
AAATGGAGAAATAAAATCATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATGA
Found at i:74733695 original size:16 final size:16
Alignment explanation
Indices: 74733674--74733704 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74733664 AATTGGATGG
*
74733674 TTTTTAGTTTAATTAA
1 TTTTTAGGTTAATTAA
74733690 TTTTTAGGTTAATTA
1 TTTTTAGGTTAATTA
74733705 GATTAATTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (16 bp):
TTTTTAGGTTAATTAA
Found at i:74738173 original size:39 final size:39
Alignment explanation
Indices: 74738130--74738206 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
74738120 CTACAGTATC
*
74738130 TAATCTCACCACCATTATTGTTTTTACACTAATCGCAAA
1 TAATCTCACCACCACTATTGTTTTTACACTAATCGCAAA
* *
74738169 TAATCTCATCGCCACTATTGTTTTTACACTAATCGCAA
1 TAATCTCACCACCACTATTGTTTTTACACTAATCGCAA
74738207 GTAAACACAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (39 bp):
TAATCTCACCACCACTATTGTTTTTACACTAATCGCAAA
Found at i:74740846 original size:16 final size:16
Alignment explanation
Indices: 74740825--74740875 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
74740815 GGTTCACTTG
74740825 AATGGAATAAGACTGT
1 AATGGAATAAGACTGT
74740841 AATGGAAT-AGAGCTGT
1 AATGGAATAAGA-CTGT
*
74740857 AATGGAATAGGACTGT
1 AATGGAATAAGACTGT
74740873 AAT
1 AAT
74740876 CAGTAATTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 3 0.09
16 27 0.84
17 2 0.06
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.25
Consensus pattern (16 bp):
AATGGAATAAGACTGT
Found at i:74747852 original size:31 final size:31
Alignment explanation
Indices: 74747817--74747944 Score: 139
Period size: 31 Copynumber: 4.1 Consensus size: 31
74747807 ACCGATGATC
*
74747817 ATATTATATCAGGTACTACGTACTAATGACT
1 ATATTATATCAGGTACTACATACTAATGACT
**
74747848 ATATTATATCAGGTACTACATACTGGTGACT
1 ATATTATATCAGGTACTACATACTAATGACT
* * * * **
74747879 ATGTTATATCAAGTACTACGTATTGGTGACT
1 ATATTATATCAGGTACTACATACTAATGACT
* * * *
74747910 ATATTATATTAGGTGCTACATACAAATTACT
1 ATATTATATCAGGTACTACATACTAATGACT
74747941 ATAT
1 ATAT
74747945 ACCAGTGTTT
Statistics
Matches: 80, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 80 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (31 bp):
ATATTATATCAGGTACTACATACTAATGACT
Found at i:74747942 original size:62 final size:62
Alignment explanation
Indices: 74747820--74747942 Score: 156
Period size: 62 Copynumber: 2.0 Consensus size: 62
74747810 GATGATCATA
* ***
74747820 TTATATCAGGTACTACGTACTAATGACTATATTATATCAGGTACTACATACTGGTGACTATG
1 TTATATCAAGTACTACGTACTAATGACTATATTATATCAGGTACTACATACAAATGACTATG
* ** * * *
74747882 TTATATCAAGTACTACGTATTGGTGACTATATTATATTAGGTGCTACATACAAATTACTAT
1 TTATATCAAGTACTACGTACTAATGACTATATTATATCAGGTACTACATACAAATGACTAT
74747943 ATACCAGTGT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 51 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (62 bp):
TTATATCAAGTACTACGTACTAATGACTATATTATATCAGGTACTACATACAAATGACTATG
Found at i:74759041 original size:18 final size:18
Alignment explanation
Indices: 74758993--74759041 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
74758983 TGTTGCAATC
*
74758993 TCTAGTAGTTACTATAGTT
1 TCTAGTA-TTACTACAGTT
74759012 T-TAGT-TTAACTACAGTT
1 TCTAGTATT-ACTACAGTT
74759029 TCTAGTATTACTA
1 TCTAGTATTACTA
74759042 ACCAGAGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 2 0.08
17 9 0.35
18 12 0.46
19 3 0.12
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (18 bp):
TCTAGTATTACTACAGTT
Found at i:74760061 original size:17 final size:18
Alignment explanation
Indices: 74760035--74760070 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
74760025 AAATTTAGGC
74760035 CGTGTAGGCC-ACACGGG
1 CGTGTAGGCCAACACGGG
*
74760052 CGTGTGGGCCAACACGGG
1 CGTGTAGGCCAACACGGG
74760070 C
1 C
74760071 AGGCCACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.31, G:0.42, T:0.11
Consensus pattern (18 bp):
CGTGTAGGCCAACACGGG
Found at i:74771802 original size:48 final size:49
Alignment explanation
Indices: 74771678--74771816 Score: 163
Period size: 49 Copynumber: 2.9 Consensus size: 49
74771668 ACCACAATTA
* * * *
74771678 ATGAGATCCTGTGTAAGACCATGTTTGGGACATGGCATCGACGTTCGAG
1 ATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGACGTTCGAG
* * ** *
74771727 ATGAGAGCTAGTGTAAGACCATTTCTGGGACATGGCATCGGTGTT-GAT
1 ATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGACGTTCGAG
* * *
74771775 ATGTGGGCCAGTGTAAGACCATATCTGGGATATGGCATCGAC
1 ATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGAC
74771817 ATTGGTATGT
Statistics
Matches: 75, Mismatches: 15, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
48 37 0.49
49 38 0.51
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (49 bp):
ATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGACGTTCGAG
Found at i:74771826 original size:48 final size:48
Alignment explanation
Indices: 74771688--74771857 Score: 173
Period size: 48 Copynumber: 3.5 Consensus size: 48
74771678 ATGAGATCCT
* * * *
74771688 GTGTAAGACCATGTTTGGGACATGGCATCGACGTTCGAG-ATGAGAGCTA
1 GTGTAAGACCATATCTGGGACATGGCATCGACGTT-G-GTATGTGAGCCA
* ** * *
74771737 GTGTAAGACCATTTCTGGGACATGGCATCGGTGTTGATATGTGGGCCA
1 GTGTAAGACCATATCTGGGACATGGCATCGACGTTGGTATGTGAGCCA
* * **
74771785 GTGTAAGACCATATCTGGGATATGGCATCGACATTGGTATGTGATTTCA
1 GTGTAAGACCATATCTGGGACATGGCATCGACGTTGGTATGTGA-GCCA
*
74771834 -TGTAAGACCATATCTGGGATATGG
1 GTGTAAGACCATATCTGGGACATGG
74771858 TGTTGATATG
Statistics
Matches: 102, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
48 69 0.68
49 33 0.32
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATATCTGGGACATGGCATCGACGTTGGTATGTGAGCCA
Found at i:74771886 original size:42 final size:45
Alignment explanation
Indices: 74771785--74771886 Score: 120
Period size: 48 Copynumber: 2.3 Consensus size: 45
74771775 ATGTGGGCCA
* *
74771785 GTGTAAGACCATATCTGGGATATGGCATCGACATTGGTATGTGATTTC
1 GTGTAAGACCATATCTGGGATATGG-ATCG--ATTGATATGAGATTTC
* *
74771833 ATGTAAGACCATATCTGGGATATGG-T-G-TTGATATGAGATTTT
1 GTGTAAGACCATATCTGGGATATGGATCGATTGATATGAGATTTC
74771875 GTGTAAGACCAT
1 GTGTAAGACCAT
74771887 GTTTGGGACA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
42 23 0.47
45 1 0.02
46 1 0.02
48 24 0.49
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.34
Consensus pattern (45 bp):
GTGTAAGACCATATCTGGGATATGGATCGATTGATATGAGATTTC
Found at i:74771900 original size:90 final size:94
Alignment explanation
Indices: 74771678--74771903 Score: 239
Period size: 90 Copynumber: 2.4 Consensus size: 94
74771668 ACCACAATTA
*
74771678 ATGAGATCCTGTGTAAGACCATGTTTGGGACATGGCATCGACGTTCGAGATGAGAGCTAGTGTAA
1 ATGAGATCCTGTGTAAGACCATGTTTGGGACATGGCATCGACATTCGAGATGAGAGCTAGTGTAA
*
74771743 GACCATTTCTGGGACATGGCATCGGTGTTGAT
66 GACCATATCTGGGA-AT-G-ATCGGTGTTGAT
* ** * * * * * **
74771775 ATGTGGGCCAGTGTAAGACCATATCTGGGATATGGCATCGACATT-G-GTATGTGATTTCA-TGT
1 ATGAGATCCTGTGTAAGACCATGTTTGGGACATGGCATCGACATTCGAG-ATGAGAGCT-AGTGT
74771837 AAGACCATATCTGGG-AT-AT-GGTGTTGAT
64 AAGACCATATCTGGGAATGATCGGTGTTGAT
**
74771865 ATGAGATTTTGTGTAAGACCATGTTTGGGACATGGCATC
1 ATGAGATCCTGTGTAAGACCATGTTTGGGACATGGCATC
74771904 AGCACCGATA
Statistics
Matches: 106, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
90 39 0.37
91 2 0.02
94 2 0.02
95 1 0.01
96 24 0.23
97 38 0.36
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.31
Consensus pattern (94 bp):
ATGAGATCCTGTGTAAGACCATGTTTGGGACATGGCATCGACATTCGAGATGAGAGCTAGTGTAA
GACCATATCTGGGAATGATCGGTGTTGAT
Found at i:74773643 original size:32 final size:27
Alignment explanation
Indices: 74773607--74773678 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 27
74773597 GGTGGATCTC
74773607 GCACTTAGCACCACCACTTAATCGGGGAATCA
1 GCACTTAGCA--ACCACTT-A--GGGGAATCA
*
74773639 GCACTTAGCAACCCCTTAGGGGAATCA
1 GCACTTAGCAACCACTTAGGGGAATCA
*
74773666 GCACATAGCAACC
1 GCACTTAGCAACC
74773679 CCCTTTTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
27 21 0.55
29 1 0.03
30 6 0.16
32 10 0.26
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.17
Consensus pattern (27 bp):
GCACTTAGCAACCACTTAGGGGAATCA
Found at i:74773776 original size:103 final size:104
Alignment explanation
Indices: 74773597--74773861 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 104
74773587 AACCGTTATT
* * * *
74773597 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTAGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCAGGGGA
** *
74773662 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
*
74773700 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCAGGGG
74773764 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
74773804 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
74773862 TTATGTACAA
Statistics
Matches: 148, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
102 1 0.01
103 81 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCAGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:74774223 original size:30 final size:29
Alignment explanation
Indices: 74774189--74774253 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
74774179 TAATCCACCA
74774189 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
74774219 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
74774249 CCCAA
1 CCCAA
74774254 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:74774227 original size:31 final size:30
Alignment explanation
Indices: 74774196--74774253 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
74774186 CCACCCAACT
74774196 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
74774226 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
74774254 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:74781273 original size:103 final size:104
Alignment explanation
Indices: 74781094--74781358 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
74781084 AACCGTTATT
* * * *
74781094 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
74781159 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
74781197 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
74781261 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
74781301 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
74781359 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:74781720 original size:30 final size:29
Alignment explanation
Indices: 74781686--74781750 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
74781676 TAATCCACCA
74781686 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
74781716 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
74781746 CCCAA
1 CCCAA
74781751 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:74781724 original size:31 final size:30
Alignment explanation
Indices: 74781693--74781750 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
74781683 CCACCCAACT
74781693 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
74781723 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
74781751 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:74783074 original size:20 final size:18
Alignment explanation
Indices: 74783051--74783097 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 18
74783041 TTATTTTGTT
74783051 TTATTTAGTTTTATTATTTA
1 TTATTTAGTTTTA-T-TTTA
*
74783071 TTATTTATTTTTATTTTA
1 TTATTTAGTTTTATTTTA
74783089 TTAATTTAG
1 TT-ATTTAG
74783098 AATAGGCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 6 0.25
19 6 0.25
20 12 0.50
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (18 bp):
TTATTTAGTTTTATTTTA
Found at i:74785153 original size:94 final size:92
Alignment explanation
Indices: 74785009--74785179 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 92
74784999 GCTCATAGCC
* *
74785009 GATGCATGTCCCAGACATGTCTTACACTGGCTTCCATCTTGAGGCCGATGCATGTCCCAAACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTCCATATTGAGGCCGATGCACGTCCCAAACATG
74785074 TCTTACACTAGCACTCGTCTCAATACT
66 TCTTACACTAGCACTCGTCTCAATACT
* * * * *
74785101 GATGCCATGTCCC-GAACATGGTCTTACACTGGC-TCTTATATTGTGGCCGATGCACGTTCTAGA
1 GATG-CATGTCCCAG-ACAT-GTCTTACACTGGCTTC-CATATTGAGGCCGATGCACGTCCCAAA
74785164 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
74785180 TCACAGTAAC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 5 0.07
93 14 0.21
94 49 0.72
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCCATATTGAGGCCGATGCACGTCCCAAACATG
TCTTACACTAGCACTCGTCTCAATACT
Found at i:74790400 original size:47 final size:47
Alignment explanation
Indices: 74790346--74790681 Score: 456
Period size: 47 Copynumber: 7.1 Consensus size: 47
74790336 TTAGGATTTT
** * * *
74790346 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74790393 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* **
74790444 ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* ** *
74790491 ATGTGATGAATGTGAACATGCGTATGCGTGATAATGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74790538 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
74790585 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
74790632 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74790679 ATG
1 ATG
74790682 CGAAATGTGT
Statistics
Matches: 266, Mismatches: 19, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 219 0.82
49 10 0.04
51 37 0.14
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:74790791 original size:46 final size:46
Alignment explanation
Indices: 74790655--74790791 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
74790645 GAACATGTAT
* *
74790655 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
74790701 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
74790747 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
74790792 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:74793177 original size:27 final size:27
Alignment explanation
Indices: 74793146--74793199 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
74793136 TTTCTTATCC
74793146 ATCAACGTTAGAAATTATTATAATTTT
1 ATCAACGTTAGAAATTATTATAATTTT
*
74793173 ATCAATGTTAGAAATTATTATAATTTT
1 ATCAACGTTAGAAATTATTATAATTTT
74793200 CATCTACAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.06, G:0.07, T:0.46
Consensus pattern (27 bp):
ATCAACGTTAGAAATTATTATAATTTT
Found at i:74793975 original size:23 final size:23
Alignment explanation
Indices: 74793945--74793990 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
74793935 TACAAATAGA
74793945 AAATCTTTTGATGGTAGAATCAC
1 AAATCTTTTGATGGTAGAATCAC
74793968 AAATCTTTTGATGGTAGAATCAC
1 AAATCTTTTGATGGTAGAATCAC
74793991 CCATTGCGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (23 bp):
AAATCTTTTGATGGTAGAATCAC
Found at i:74795041 original size:15 final size:15
Alignment explanation
Indices: 74795017--74795046 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74795007 TTGCCTGTAC
*
74795017 TTAGGTAATTGCATT
1 TTAGGAAATTGCATT
74795032 TTAGGAAATTGCATT
1 TTAGGAAATTGCATT
74795047 AAAAGGTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (15 bp):
TTAGGAAATTGCATT
Found at i:74796247 original size:10 final size:10
Alignment explanation
Indices: 74796234--74796261 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
74796224 GAGGATTGGT
74796234 AATTTGGTGA
1 AATTTGGTGA
74796244 AATTTGGTGA
1 AATTTGGTGA
74796254 AATTTGGT
1 AATTTGGT
74796262 TTGGTTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (10 bp):
AATTTGGTGA
Found at i:74809614 original size:22 final size:21
Alignment explanation
Indices: 74809581--74809622 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
74809571 AGAATCTACA
*
74809581 AATATTGATATTTAATATTTAC
1 AATATTGATATTAAAT-TTTAC
74809603 AATATT-AGTATTAAATTTTA
1 AATATTGA-TATTAAATTTTA
74809623 TTAAAGTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (21 bp):
AATATTGATATTAAATTTTAC
Found at i:74820534 original size:28 final size:29
Alignment explanation
Indices: 74820498--74820562 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 29
74820488 TTAAGTAATT
* *
74820498 TTGACAAAAATGTCAATT-AAGGATTAAA
1 TTGAGAAAAATGTAAATTGAAGGATTAAA
* * *
74820526 TTGAGAAAATTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATTGAAGGATTAAA
*
74820555 TTGTGAAA
1 TTGAGAAA
74820563 TAAATGTGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.45, C:0.03, G:0.22, T:0.31
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTGAAGGATTAAA
Found at i:74824614 original size:33 final size:33
Alignment explanation
Indices: 74824572--74824638 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
74824562 TTTCATTGTT
*
74824572 ATTGGCTTAGAAATATGTGAGAAAGGGTTGCGA
1 ATTGGCTTAGAAATATGCGAGAAAGGGTTGCGA
74824605 ATTGGCTTAGAAATATGCGAGAAAGGGTTGCGA
1 ATTGGCTTAGAAATATGCGAGAAAGGGTTGCGA
74824638 A
1 A
74824639 GCTTACTTGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.07, G:0.33, T:0.25
Consensus pattern (33 bp):
ATTGGCTTAGAAATATGCGAGAAAGGGTTGCGA
Found at i:74828945 original size:43 final size:43
Alignment explanation
Indices: 74828781--74828946 Score: 158
Period size: 43 Copynumber: 3.8 Consensus size: 43
74828771 ACATTAGGTT
* *
74828781 ATCGAGATGTGATTACATGTAAGACCATGTCTAGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * * *
74828824 ATTG-TATTGAGATTACGTGTAAGACCATGTCTGAGACATTGGC
1 ATCGATA-TGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * * * *
74828867 ATCGTTAAT-TCAATTTCGTGTAAGACTC-TGTCTGGGACAATGGC
1 ATCGAT-ATGT-GATTACATGTAAGAC-CATGTCTGGGACATTGGC
* *
74828911 ATCGATATGTGATAACATGTAAGACCATATCTGGGA
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGA
74828947 TATGACATTG
Statistics
Matches: 98, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
42 2 0.02
43 59 0.60
44 35 0.36
45 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
Found at i:74832269 original size:46 final size:45
Alignment explanation
Indices: 74832219--74832467 Score: 160
Period size: 46 Copynumber: 5.2 Consensus size: 45
74832209 ATTGTGGGCT
**
74832219 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGTTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACGACATGAGAGCC
* * *
74832265 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGCATCGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCA-CGACAT---GA-GA--GCC
* * *
74832319 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACGACATG-AGAGCC
* * * * *
74832365 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACGACATGAGAGCC
* * * * * * *
74832411 AGTATAAGGCCATGTCTAGGACATGGCATCGACATGAGAT-ATGAGCT
1 AGTGTAA-GACATGTCTGGGACAT-GCATCGCCACGACATGA-GAGCC
74832458 AGTGTAAGAC
1 AGTGTAAGAC
74832468 CGTTTCTGGA
Statistics
Matches: 161, Mismatches: 27, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
45 1 0.01
46 59 0.37
47 45 0.28
48 15 0.09
49 1 0.01
50 1 0.01
51 2 0.01
52 10 0.06
53 16 0.10
54 11 0.07
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACGACATGAGAGCC
Found at i:74832365 original size:100 final size:98
Alignment explanation
Indices: 74832216--74832395 Score: 272
Period size: 100 Copynumber: 1.8 Consensus size: 98
74832206 GTTATTGTGG
** *
74832216 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACGTTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGAGAGCCAGTGTAAGA-CATGTC
74832281 TGGGACATGGCATCGGCATCGGCATCGAGACGAGT
65 TGGGACAT-GCATCGGCATCGGCATCGAGACGAGT
* * *
74832316 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGCCAGTGTAAGACATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACG-AGAGCCAGTGTAAGACATGTC
74832380 TGGGACATGCATCGGC
65 TGGGACATGCATCGGC
74832396 TACGAGATGA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
98 8 0.11
99 13 0.18
100 51 0.70
101 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (98 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCGGCATCGGCATCGAGACGAGT
Found at i:74834917 original size:22 final size:22
Alignment explanation
Indices: 74834891--74834934 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
74834881 GTTTTCTAAA
*
74834891 GTCCTCGA-ATTAGTCCTAAACT
1 GTCCTC-ATATTAGTCCCAAACT
74834913 GTCCTCATATTAGTCCCAAACT
1 GTCCTCATATTAGTCCCAAACT
74834935 ACTCCCGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (22 bp):
GTCCTCATATTAGTCCCAAACT
Found at i:74844429 original size:18 final size:18
Alignment explanation
Indices: 74844402--74844460 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
74844392 AAAGAGTGAG
74844402 AAGT-AAAAGTTTAGGGA
1 AAGTAAAAAGTTTAGGGA
* *
74844419 AAATAAAAAGTTT-TGGA
1 AAGTAAAAAGTTTAGGGA
74844436 AAGT-AAAAGTTTGAGGGA
1 AAGTAAAAAGTTT-AGGGA
74844454 AAGTAAA
1 AAGTAAA
74844461 TAAATGAGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 8 0.24
17 9 0.26
18 15 0.44
19 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.25, T:0.24
Consensus pattern (18 bp):
AAGTAAAAAGTTTAGGGA
Found at i:74844936 original size:29 final size:30
Alignment explanation
Indices: 74844904--74844964 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
74844894 ACTCCCAAAC
* * *
74844904 CCTTTT-ACTTTTCTCTCAAAATTTTTACT
1 CCTTTTCACTTTTCCCCCAAAACTTTTACT
*
74844933 CCTTTTCATTTTTCCCCCAAAACTTTTACT
1 CCTTTTCACTTTTCCCCCAAAACTTTTACT
74844963 CC
1 CC
74844965 CCTCCCATCC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.20, C:0.31, G:0.00, T:0.49
Consensus pattern (30 bp):
CCTTTTCACTTTTCCCCCAAAACTTTTACT
Found at i:74846154 original size:9 final size:9
Alignment explanation
Indices: 74846135--74846167 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
74846125 ATTCGAGTTG
74846135 ACTCGAATA
1 ACTCGAATA
74846144 ACTC-AATTA
1 ACTCGAA-TA
74846153 ACTCGAATA
1 ACTCGAATA
74846162 ACTCGA
1 ACTCGA
74846168 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 18 0.82
10 2 0.09
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:74851484 original size:10 final size:10
Alignment explanation
Indices: 74851469--74851495 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
74851459 TCGTTAACTC
74851469 GACTCGACTT
1 GACTCGACTT
74851479 GACTCGACTT
1 GACTCGACTT
74851489 GACTCGA
1 GACTCGA
74851496 AACTTTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (10 bp):
GACTCGACTT
Found at i:74853404 original size:20 final size:20
Alignment explanation
Indices: 74853379--74853418 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
74853369 TCTTTGTTTA
74853379 TCTCTCT-TTGTTATATTTTT
1 TCTCTCTATT-TTATATTTTT
*
74853399 TCTCTCTATTTTATCTTTTT
1 TCTCTCTATTTTATATTTTT
74853419 AGAACAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.10, C:0.17, G:0.03, T:0.70
Consensus pattern (20 bp):
TCTCTCTATTTTATATTTTT
Found at i:74854633 original size:16 final size:16
Alignment explanation
Indices: 74854612--74854663 Score: 77
Period size: 16 Copynumber: 3.1 Consensus size: 16
74854602 CAAATGCATC
*
74854612 TTATTTAATAATATTT
1 TTATTTAAAAATATTT
74854628 TTATTTAAAAATATTTT
1 TTATTTAAAAATA-TTT
74854645 TTATCTTAAAAATATTT
1 TTAT-TTAAAAATATTT
74854662 TT
1 TT
74854664 TTAAAAACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
16 12 0.36
17 12 0.36
18 9 0.27
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (16 bp):
TTATTTAAAAATATTT
Found at i:74854653 original size:18 final size:17
Alignment explanation
Indices: 74854612--74854664 Score: 81
Period size: 18 Copynumber: 3.1 Consensus size: 17
74854602 CAAATGCATC
*
74854612 TTATTTAATAATA-TTT
1 TTATTTAAAAATATTTT
74854628 TTATTTAAAAATATTTT
1 TTATTTAAAAATATTTT
74854645 TTATCTTAAAAATATTTT
1 TTAT-TTAAAAATATTTT
74854663 TT
1 TT
74854665 TAAAAACAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
16 12 0.35
17 7 0.21
18 15 0.44
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATTTAAAAATATTTT
Found at i:74857860 original size:96 final size:96
Alignment explanation
Indices: 74857676--74857869 Score: 253
Period size: 96 Copynumber: 2.0 Consensus size: 96
74857666 TCACTTCTTT
* * * *
74857676 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCTTTGCTTGAACCAAGCTTCTTGGGCTCATT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCAGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCAGT
* * * *
74857741 GTCTGCTCCATCGTTCCCTTCGATGACAGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
* * * *
74857772 TTGCTCCTCTTTGCCCTCTTGGCTTCAGCTTTTCCCTTGCTCGAACCAAGTTTCTTGGGCTCCGT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCAGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCAGT
* * *
74857837 ATCTGCTCGATCATTTCCATCGATAACGGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
74857868 TT
1 TT
74857870 CCTCGGACAC
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.13, C:0.32, G:0.18, T:0.37
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCTTGGCTTCAGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCAGT
ATCTGCTCCATCATTCCCATCGATAACAGAC
Found at i:74871500 original size:21 final size:21
Alignment explanation
Indices: 74871471--74871511 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74871461 AAGTTTGTAA
* *
74871471 TATTTTATATTATGTCATTTT
1 TATTATATATTATGCCATTTT
74871492 TATTATATATTATGCCATTT
1 TATTATATATTATGCCATTT
74871512 ATAATACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (21 bp):
TATTATATATTATGCCATTTT
Found at i:74874378 original size:57 final size:57
Alignment explanation
Indices: 74874315--74874427 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 57
74874305 GTGAGGGAGA
*
74874315 GGGAAAGAATCAGAGTAGA-AGGAGGGATGGTGGGGAAGAGGGGGAGAGGGGGAAAGG
1 GGGAAAGAATCAGAGTAGAGA-GAGGGATGGTGGGGAAGAGGAGGAGAGGGGGAAAGG
* *
74874372 GGGAAAGAATCATAGTAGGGAGAGGGATGGTGGGGAAGAGGAGGAGAGGGGGAAAG
1 GGGAAAGAATCAGAGTAGAGAGAGGGATGGTGGGGAAGAGGAGGAGAGGGGGAAAG
74874428 AATCAGAGTA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
57 51 0.98
58 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.55, T:0.08
Consensus pattern (57 bp):
GGGAAAGAATCAGAGTAGAGAGAGGGATGGTGGGGAAGAGGAGGAGAGGGGGAAAGG
Found at i:74874412 original size:49 final size:49
Alignment explanation
Indices: 74874354--74874462 Score: 157
Period size: 49 Copynumber: 2.2 Consensus size: 49
74874344 GTGGGGAAGA
* * *
74874354 GGGGGAGAGGGGGAAAGGGGGAAAGAATCATAGT-AGGGAGAGGGATGGT
1 GGGGAAGAGGGGGAAAGGGGGAAAGAATCAGAGTAAGGG-GAGGGATAGT
* *
74874403 GGGGAAGAGGAGGAGAGGGGGAAAGAATCAGAGTAAGGGGAGGGATAGT
1 GGGGAAGAGGGGGAAAGGGGGAAAGAATCAGAGTAAGGGGAGGGATAGT
74874452 GGGGAAGAGGG
1 GGGGAAGAGGG
74874463 AGAGGAATAG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
49 49 0.92
50 4 0.08
ACGTcount: A:0.34, C:0.02, G:0.56, T:0.08
Consensus pattern (49 bp):
GGGGAAGAGGGGGAAAGGGGGAAAGAATCAGAGTAAGGGGAGGGATAGT
Found at i:74879517 original size:16 final size:16
Alignment explanation
Indices: 74879498--74879534 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
74879488 TCTGCTGAAA
*
74879498 GCGCTTCCAGCTGGAC
1 GCGCTTCCAACTGGAC
74879514 GCGCTTCCAACTGGAC
1 GCGCTTCCAACTGGAC
74879530 GCGCT
1 GCGCT
74879535 ATCAGTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.14, C:0.38, G:0.30, T:0.19
Consensus pattern (16 bp):
GCGCTTCCAACTGGAC
Found at i:74879997 original size:16 final size:16
Alignment explanation
Indices: 74879963--74879996 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
74879953 CATACTTTAT
74879963 AAACCCTATCCTTAAA
1 AAACCCTATCCTTAAA
*
74879979 AAACCCTA-CTTTAAA
1 AAACCCTATCCTTAAA
74879994 AAA
1 AAA
74879997 ATAAAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (16 bp):
AAACCCTATCCTTAAA
Found at i:74880824 original size:27 final size:27
Alignment explanation
Indices: 74880781--74880834 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
74880771 ACCTATTATG
*
74880781 CTCTATTTTTGGATTTCTTGAAACTTC
1 CTCTATATTTGGATTTCTTGAAACTTC
*
74880808 CTCTATATTT-GAGTTTCTTGAAGCTTC
1 CTCTATATTTGGA-TTTCTTGAAACTTC
74880835 GACAACCCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.50
Consensus pattern (27 bp):
CTCTATATTTGGATTTCTTGAAACTTC
Found at i:74883271 original size:19 final size:19
Alignment explanation
Indices: 74883249--74883285 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74883239 TTGTTATTAC
*
74883249 TATTTATTATTATTAATGT
1 TATTTACTATTATTAATGT
*
74883268 TATTTACTATTGTTAATG
1 TATTTACTATTATTAATG
74883286 ACTAAATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (19 bp):
TATTTACTATTATTAATGT
Found at i:74883790 original size:21 final size:21
Alignment explanation
Indices: 74883764--74883806 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
74883754 TAATTTTGAA
*
74883764 AATTAGATATTAAAGTTT-TGC
1 AATTAGAAATTAAA-TTTGTGC
74883785 AATTAGAAATTAAATTTGTGC
1 AATTAGAAATTAAATTTGTGC
74883806 A
1 A
74883807 TAAGTATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.42, C:0.05, G:0.14, T:0.40
Consensus pattern (21 bp):
AATTAGAAATTAAATTTGTGC
Found at i:74888173 original size:20 final size:20
Alignment explanation
Indices: 74888148--74888188 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
74888138 AGACAAGTAA
74888148 TCCATATAAAATGTTTGAAT
1 TCCATATAAAATGTTTGAAT
74888168 TCCATATAAAATGTTTGAAT
1 TCCATATAAAATGTTTGAAT
74888188 T
1 T
74888189 TCTGTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
TCCATATAAAATGTTTGAAT
Found at i:74889112 original size:87 final size:87
Alignment explanation
Indices: 74889003--74889176 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
74888993 AATAAGTCTT
74889003 ACAACTCATAAATAGCAGTAGTAAAGAGACCAAGGTAAACAATAAAACAAGAGTAACAGAAGGTA
1 ACAACTCATAAATAGCAGTAGTAAAGAGACCAAGGTAAACAATAAAACAAGAGTAACAGAAGGTA
74889068 CTAAACTCACAGCTCTATCGAA
66 CTAAACTCACAGCTCTATCGAA
74889090 ACAACTCATAAATAGCAGTAGTAAAGAGACCAAGGTAAACAATAAAACAAGAGTAACAGAAGGTA
1 ACAACTCATAAATAGCAGTAGTAAAGAGACCAAGGTAAACAATAAAACAAGAGTAACAGAAGGTA
74889155 CTAAACTCACAGCTCTATCGAA
66 CTAAACTCACAGCTCTATCGAA
74889177 TTCCAACATG
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.49, C:0.18, G:0.16, T:0.16
Consensus pattern (87 bp):
ACAACTCATAAATAGCAGTAGTAAAGAGACCAAGGTAAACAATAAAACAAGAGTAACAGAAGGTA
CTAAACTCACAGCTCTATCGAA
Found at i:74892759 original size:18 final size:19
Alignment explanation
Indices: 74892736--74892781 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
74892726 CGAACTAGCA
74892736 AGCTGGG-GGAAAGTGGCG
1 AGCTGGGAGGAAAGTGGCG
* *
74892754 AGCTGGGAGTAGAGTGGCG
1 AGCTGGGAGGAAAGTGGCG
*
74892773 AGTTGGGAG
1 AGCTGGGAG
74892782 TAGAGTGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.22, C:0.09, G:0.54, T:0.15
Consensus pattern (19 bp):
AGCTGGGAGGAAAGTGGCG
Found at i:74892771 original size:19 final size:19
Alignment explanation
Indices: 74892747--74892789 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
74892737 GCTGGGGGAA
74892747 AGTGGCGAGCTGGGAGTAG
1 AGTGGCGAGCTGGGAGTAG
*
74892766 AGTGGCGAGTTGGGAGTAG
1 AGTGGCGAGCTGGGAGTAG
74892785 AGTGG
1 AGTGG
74892790 TACGAAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.21, C:0.07, G:0.53, T:0.19
Consensus pattern (19 bp):
AGTGGCGAGCTGGGAGTAG
Found at i:74894102 original size:18 final size:18
Alignment explanation
Indices: 74894079--74894158 Score: 97
Period size: 18 Copynumber: 4.4 Consensus size: 18
74894069 TATCAGTATC
*
74894079 ATTCAGTAACAACCAATT
1 ATTCAGTAACAATCAATT
* *
74894097 ATTCAGTAGCAATCAGTT
1 ATTCAGTAACAATCAATT
*
74894115 ATTCAGTAACAATCAATC
1 ATTCAGTAACAATCAATT
* * *
74894133 ATTCAGTAACAGTCAGTC
1 ATTCAGTAACAATCAATT
74894151 ATTCAGTA
1 ATTCAGTA
74894159 CCTTTATTCA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 54 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (18 bp):
ATTCAGTAACAATCAATT
Found at i:74894120 original size:36 final size:36
Alignment explanation
Indices: 74894070--74894158 Score: 115
Period size: 36 Copynumber: 2.4 Consensus size: 36
74894060 CAATCAATTT
* *
74894070 ATCAGTATCATTCAGTAACAACCAATTATTCAGTAGCA
1 ATCAGT-T-ATTCAGTAACAACCAATCATTCAGTAACA
*
74894108 ATCAGTTATTCAGTAACAATCAATCATTCAGTAACA
1 ATCAGTTATTCAGTAACAACCAATCATTCAGTAACA
* *
74894144 GTCAGTCATTCAGTA
1 ATCAGTTATTCAGTA
74894159 CCTTTATTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 39 0.85
37 1 0.02
38 6 0.13
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (36 bp):
ATCAGTTATTCAGTAACAACCAATCATTCAGTAACA
Found at i:74894364 original size:44 final size:44
Alignment explanation
Indices: 74894311--74894402 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
74894301 CCGAAGTAAC
* * *
74894311 AGTAGCAGTACGACACACATGGTGCCTCATTGACTCGAA-GTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTC-AAGGTCGA
* **
74894355 AGTAACAGTATGACACTTATAGTGCCTCATCGACTCAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAGGTCGA
74894399 AGTA
1 AGTA
74894403 TCTCTGAACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 2 0.05
44 39 0.95
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAGGTCGA
Found at i:74896183 original size:47 final size:44
Alignment explanation
Indices: 74896116--74896380 Score: 121
Period size: 47 Copynumber: 5.7 Consensus size: 44
74896106 ATTTGTGTGC
* *
74896116 CAGTGTCAGACACGTCTGGGACATGCATCGACCACATTATGAGAGT
1 CAGTGTAAGACATGTCTGGGACATGCATCG--CACATTATGAGAGT
* *
74896162 CAGTGTAAGACCATGTCTGGGACATGACATTG-GCATTGA-GACAAGAGT
1 CAGTGTAAGA-CATGTCTGGGACATG-CATCGCACATT-ATG---AGAGT
* * ** *
74896210 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAATGTA-AGC
1 CAGTGTAAGACATGTCTGGGACATGCATC-G-CAC-ATTATG-AGAGT
* * * * *
74896257 CAGTGTAAGATATGTCTGGAACATGCATCG---GTTAGGGATGTGT
1 CAGTGTAAGACATGTCTGGGACATGCATCGCACATTA-TGA-GAGT
* *
74896300 CAGTGTAAGACCATGTCTGGGACATAGCATTGGCACGGATATGTGAGAG-
1 CAGTGTAAGA-CATGTCTGGGACAT-GCA-TCGCAC--AT-TATGAGAGT
*
74896349 CTAGTGTAAGACCATGTTTGGGACATGGCATC
1 C-AGTGTAAGA-CATGTCTGGGACAT-GCATC
74896381 AGCCTTATAC
Statistics
Matches: 165, Mismatches: 30, Indels: 45
0.69 0.12 0.19
Matches are distributed among these distances:
41 2 0.01
42 1 0.01
43 11 0.07
44 12 0.07
45 8 0.05
46 16 0.10
47 58 0.35
48 19 0.12
49 4 0.02
50 30 0.18
51 3 0.02
52 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (44 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGCACATTATGAGAGT
Found at i:74898272 original size:19 final size:19
Alignment explanation
Indices: 74898248--74898296 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
74898238 CGGCCTGAGG
74898248 ACACGGGCGTGCCAAAGGC
1 ACACGGGCGTGCCAAAGGC
74898267 ACACGGGCGTGCCAAAGGC
1 ACACGGGCGTGCCAAAGGC
*
74898286 ACACCGGCGTG
1 ACACGGGCGTG
74898297 TCCCTATGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.24, C:0.33, G:0.37, T:0.06
Consensus pattern (19 bp):
ACACGGGCGTGCCAAAGGC
Found at i:74899477 original size:3 final size:3
Alignment explanation
Indices: 74899462--74899541 Score: 60
Period size: 3 Copynumber: 27.0 Consensus size: 3
74899452 ATATATTAGT
* * *
74899462 TAA TAA TAT TAA TAA TAA TACA TTA TAA TAA TATA TAA TAA TAA T-T
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA TAA
* *
74899508 TAA TAA T-T TAA T-A TAA -AA TTAA TAA TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
74899542 ATATCTATTT
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
2 6 0.10
3 47 0.78
4 7 0.12
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:74899489 original size:13 final size:13
Alignment explanation
Indices: 74899462--74899506 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
74899452 ATATATTAGT
*
74899462 TAATAATA-TTAA
1 TAATAATACATAA
*
74899474 TAATAATACATTA
1 TAATAATACATAA
*
74899487 TAATAATATATAA
1 TAATAATACATAA
74899500 TAATAAT
1 TAATAAT
74899507 TTAATAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 8 0.29
13 20 0.71
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATAATACATAA
Found at i:74900048 original size:20 final size:19
Alignment explanation
Indices: 74900002--74900048 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
74899992 AATCATTTTT
*
74900002 CCTAATTTCTCTTAATTAAG
1 CCTAA-TTCACTTAATTAAG
74900022 -CTAAATTCACTTAATTAAAG
1 CCT-AATTCACTTAATT-AAG
74900042 CCTAATT
1 CCTAATT
74900049 AAACACACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 12 0.52
20 9 0.39
21 2 0.09
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.40
Consensus pattern (19 bp):
CCTAATTCACTTAATTAAG
Found at i:74902336 original size:25 final size:25
Alignment explanation
Indices: 74902303--74902355 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
74902293 AAAGAATAAT
*
74902303 TGTTAAGAGTTGAATTTGTAAGAAA
1 TGTTAAGAGTTGAATTTATAAGAAA
* *
74902328 TGTTGAGAGTTGAATTTATAAGTAA
1 TGTTAAGAGTTGAATTTATAAGAAA
74902353 TGT
1 TGT
74902356 AATCAGATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.40
Consensus pattern (25 bp):
TGTTAAGAGTTGAATTTATAAGAAA
Found at i:74908843 original size:68 final size:67
Alignment explanation
Indices: 74908730--74909245 Score: 267
Period size: 68 Copynumber: 7.6 Consensus size: 67
74908720 AGGTCATGGC
** * * * * * *
74908730 CTTAAATTGACGTGCTACATAGATCAATTGTGATATTAAGTCAGCGGACTATAAAATAAAAATGC
1 CTTAAATTGACGTGCTATGTAGGTTAGTCGTGATCTTAAATCAGCGGACTATAAAATAAAAA-GC
74908795 GAT
65 GAT
* * * **
74908798 CTTAAATTGACGTGCTATGTAGGTCT-GTCGTGATTTTAAACCAGCGGACTGTAAAATAGATGAG
1 CTTAAATTGACGTGCTATGTAGGT-TAGTCGTGATCTTAAATCAGCGGACTATAAAATA-AAAAG
*
74908862 CTAT
64 CGAT
** * ** *
74908866 CTTAAATCAATGTGCTATGTAGGTTAG-CTGTGATCTTAAATCAAAGGACTATAAGAT-AAAAGC
1 CTTAAATTGACGTGCTATGTAGGTTAGTC-GTGATCTTAAATCAGCGGACTATAAAATAAAAAGC
74908929 ATGAT
65 --GAT
* * * * * * *
74908934 CTTAAATTGGCATGCTATGTAGGTTAGCCGAGATCTTAAATCAGGGGACTATAAGATAGAAATGC
1 CTTAAATTGACGTGCTATGTAGGTTAGTCGTGATCTTAAATCAGCGGACTATAAAATA-AAAAGC
*
74908999 TAT
65 GAT
* * * * * * * *
74909002 CTTAAA-TCAGCGTGCTATGTAGGTTAGTTGT-ATCTTAAAGCAACAGACT-GAAGAT-AGAAGC
1 CTTAAATTGA-CGTGCTATGTAGGTTAGTCGTGATCTTAAATCAGCGGACTATAAAATAAAAAGC
74909063 GTGAT
65 --GAT
* * * * ** * * * * * * *
74909068 CTTAAATCGACGTGCTATGCAAGCTAACCGTGATATAAAATCAGTGGGCTGTAAGAT-AGAAGCG
1 CTTAAATTGACGTGCTATGTAGGTTAGTCGTGATCTTAAATCAGCGGACTATAAAATAAAAAGCG
74909132 CAAT
66 --AT
** * * * * * * * *
74909136 CTTAAATCAACGTGCTATGTAGGTTAGCCATGATCTTAAATTAGTGGACTGTAAGAAGAAATA-T
1 CTTAAATTGACGTGCTATGTAGGTTAGTCGTGATCTTAAATCAGCGGACTATAA-AATAAAAAGC
74909200 GAT
65 GAT
* * *** *
74909203 CTTAAGTCGGTATGCTATGTAGGTTAGTTGTGATCTTAAATCA
1 CTTAAATTGACGTGCTATGTAGGTTAGTCGTGATCTTAAATCA
74909246 ACAGATTGTA
Statistics
Matches: 340, Mismatches: 89, Indels: 39
0.73 0.19 0.08
Matches are distributed among these distances:
64 4 0.01
66 33 0.10
67 65 0.19
68 226 0.66
69 5 0.01
70 7 0.02
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (67 bp):
CTTAAATTGACGTGCTATGTAGGTTAGTCGTGATCTTAAATCAGCGGACTATAAAATAAAAAGCG
AT
Found at i:74909123 original size:134 final size:136
Alignment explanation
Indices: 74908861--74909175 Score: 377
Period size: 134 Copynumber: 2.3 Consensus size: 136
74908851 AAATAGATGA
* * *
74908861 GCTATCTTAAATCAATGTGCTATGTAGGTTAGCTGTGATCTTAAATCAAAGGACTATAAGATAAA
1 GCTATCTTAAATCAACGTGCTATGTAGGTTAGCTGTGATCTTAAAGCAAAGGACTAGAAGATAAA
* * * * * * * *
74908926 AGCATGATCTTAAATTGGCATGCTATGTAGGTTAGCCGAGATCTTAAATCAGGGGACTATAAGAT
66 AGCATGATCTTAAATCGACATGCTATGCAAGCTAACCGAGATATAAAATCAGGGGACTATAAGAT
*
74908991 AGAAAT
131 AGAAAC
* * *
74908997 GCTATCTTAAATCAGCGTGCTATGTAGGTTAGTTGT-ATCTTAAAGCAACA-GACT-GAAGATAG
1 GCTATCTTAAATCAACGTGCTATGTAGGTTAGCTGTGATCTTAAAGCAA-AGGACTAGAAGATAA
* * * *
74909059 AAGCGTGATCTTAAATCGACGTGCTATGCAAGCTAACCGTGATATAAAATCAGTGGG-CTGTAAG
65 AAGCATGATCTTAAATCGACATGCTATGCAAGCTAACCGAGATATAAAATCAG-GGGACTATAAG
*
74909123 ATAGAAGC
129 ATAGAAAC
* **
74909131 GCAATCTTAAATCAACGTGCTATGTAGGTTAGCCATGATCTTAAA
1 GCTATCTTAAATCAACGTGCTATGTAGGTTAGCTGTGATCTTAAA
74909176 TTAGTGGACT
Statistics
Matches: 151, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
134 91 0.60
135 26 0.17
136 34 0.23
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (136 bp):
GCTATCTTAAATCAACGTGCTATGTAGGTTAGCTGTGATCTTAAAGCAAAGGACTAGAAGATAAA
AGCATGATCTTAAATCGACATGCTATGCAAGCTAACCGAGATATAAAATCAGGGGACTATAAGAT
AGAAAC
Found at i:74910637 original size:30 final size:30
Alignment explanation
Indices: 74910580--74910637 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
74910570 CACGGGCTGG
* * *
74910580 CACATGGGCTTGTGTCCAGCCCGTGTGGCA
1 CACATAGGCGTGTGTCCAGCCCATGTGGCA
74910610 CACATAGGCGTGTGTCCTA-CCCATGTGG
1 CACATAGGCGTGTGTCC-AGCCCATGTGG
74910638 AAATGCCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.24
Consensus pattern (30 bp):
CACATAGGCGTGTGTCCAGCCCATGTGGCA
Found at i:74911739 original size:20 final size:21
Alignment explanation
Indices: 74911714--74911753 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74911704 TCAAGCTAAT
*
74911714 AAGGGC-ACACGCCTGTGTGG
1 AAGGGCAACACGCCCGTGTGG
74911734 AAGGGCAACACGCCCGTGTG
1 AAGGGCAACACGCCCGTGTG
74911754 TCTTCTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (21 bp):
AAGGGCAACACGCCCGTGTGG
Found at i:74913050 original size:48 final size:47
Alignment explanation
Indices: 74912998--74913311 Score: 225
Period size: 48 Copynumber: 6.6 Consensus size: 47
74912988 CATGTTCCAA
* *
74912998 ACATGGTTTTACACTGGCTCACATGTCGAGGCCGATGCCATATCCCAG
1 ACATGGTCTTACACTGGCTCACATATC-AGGCCGATGCCATATCCCAG
* * ** * * * *
74913046 ACATGGTCTTACAGTAGCTTTCGTCTCAGTGCCAATGCCATATCTCAG
1 ACATGGTCTTACACTGGCTCACATATCAG-GCCGATGCCATATCCCAG
* * * *
74913094 ACATGGTCTTACACTGGCTCTCATAAT-ATGGCGGATGCCATGTCCCAA
1 ACATGGTCTTACACTGGCTCACAT-ATCA-GGCCGATGCCATATCCCAG
* * * * * *
74913142 ACATGGTCTTACACTAGCGCACATATCAATGCCGATTCCATGTCCTAG
1 ACATGGTCTTACACTGGCTCACATATC-AGGCCGATGCCATATCCCAG
* * * *** * * *
74913190 ACATGGTCTTACACTGGCTCTCACAACATTTTCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCACATATCA-GGCCGATGCCATATCCCAG
* ** * * *
74913238 ACATGGTCTTACACTAGCTCTTATATCGTGGCCGACGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTCACATATC-AGGCCGATGCCATATCCCAG
* *
74913286 ACATGGTCTTACACTAGCGCACATAT
1 ACATGGTCTTACACTGGCTCACATAT
74913312 AAGCCAAATG
Statistics
Matches: 207, Mismatches: 52, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
47 5 0.02
48 199 0.96
49 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
ACATGGTCTTACACTGGCTCACATATCAGGCCGATGCCATATCCCAG
Found at i:74913192 original size:96 final size:96
Alignment explanation
Indices: 74913082--74913300 Score: 280
Period size: 96 Copynumber: 2.3 Consensus size: 96
74913072 CAGTGCCAAT
* * * *
74913082 GCCATATCTCAGACATGGTCTTACACTGGCTCTCATAATA-TGGCGGATGCCATGTCCCAAACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATTGGC-GATGCCATGTCCCAAACAT
*
74913146 GGTCTTACACTAGCGCACATATCAAT-GCCGAT
65 GGTCTTACACTAGCGCACATATC-ATGGCCGAC
* * ** *
74913178 TCCATGTCCTAGACATGGTCTTACACTGGCTCTCACAACATTTTCGATGCCATGTTCCAAACATG
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATTGGCGATGCCATGTCCCAAACATG
* ** *
74913243 GTCTTACACTAGCTCTTATATCGTGGCCGAC
66 GTCTTACACTAGCGCACATATCATGGCCGAC
74913274 GCCATGTCCCAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
74913301 AGCGCACATA
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
95 1 0.01
96 102 0.97
97 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATTGGCGATGCCATGTCCCAAACATG
GTCTTACACTAGCGCACATATCATGGCCGAC
Found at i:74922185 original size:113 final size:113
Alignment explanation
Indices: 74921987--74922213 Score: 427
Period size: 113 Copynumber: 2.0 Consensus size: 113
74921977 AGCGAAAGAG
*
74921987 GGTAAGAAAAAATTGAAAATAGTGACAAATGGGTGCTGAAAGAATATAAACCTCTGGTTCCGTAC
1 GGTAAGAAAAAATTGAAAATAGTGACAAATGGGTGCTGAAAGAATATAAACCTCCGGTTCCGTAC
*
74922052 CCAGCATTGCATTGATACGCAATTCGGTAAGTTTCTTGAACTTTTTAA
66 CCAGCATCGCATTGATACGCAATTCGGTAAGTTTCTTGAACTTTTTAA
*
74922100 GGTAAGAAAAAATTGAAAATAGTGACAAATGGGTGTTGAAAGAATATAAACCTCCGGTTCCGTAC
1 GGTAAGAAAAAATTGAAAATAGTGACAAATGGGTGCTGAAAGAATATAAACCTCCGGTTCCGTAC
74922165 CCAGCATCGCATTGATACGCAATTCGGTAAGTTTCTTGAACTTTTTAA
66 CCAGCATCGCATTGATACGCAATTCGGTAAGTTTCTTGAACTTTTTAA
74922213 G
1 G
74922214 CAATTACATA
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (113 bp):
GGTAAGAAAAAATTGAAAATAGTGACAAATGGGTGCTGAAAGAATATAAACCTCCGGTTCCGTAC
CCAGCATCGCATTGATACGCAATTCGGTAAGTTTCTTGAACTTTTTAA
Found at i:74930892 original size:48 final size:48
Alignment explanation
Indices: 74930778--74931051 Score: 275
Period size: 48 Copynumber: 5.7 Consensus size: 48
74930768 GGTGAATTGT
* * * * * *
74930778 CGATGCCATGTTCCAAAAATGGTCTTACACTGGCTCACATGTCGA-GGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGGC
* * * * *
74930826 CAATTCCATATCCCAGACATGGTCTTACACTAGCTTTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCATGGC
* * *
74930874 CGATGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATCAAT-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGGC
* * * * *
74930922 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAGAACATTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGC
* * * *
74930970 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATATCATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGC
* *
74931018 TGACGCCATGTCCCAGACATGGTCTTACACTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC
74931052 ACACAGATCA
Statistics
Matches: 185, Mismatches: 36, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
47 4 0.02
48 179 0.97
49 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGC
Found at i:74930942 original size:96 final size:95
Alignment explanation
Indices: 74930778--74931051 Score: 325
Period size: 96 Copynumber: 2.9 Consensus size: 95
74930768 GGTGAATTGT
* * * * * *
74930778 CGATGCCATGTTCCAAAAATGGTCTTACACTGGCTCACATGTCGAGGCCAATTCCATATCCCAGA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-ATGCCGATGCCATGTCCCAGA
* * **
74930843 CATGGTCTTACACTAGCTTTCATAATGTGGC
65 CATGGTCTTACACTAGCTCTCAGAACATGGC
* * * *
74930874 CGATGCCATG-TCCTAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAA
1 CGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACATATC-ATGCCGATGCCATGTCCCAG
* *
74930938 ACATGGTCTTACACTGGCTCTCAGAACATTGC
64 ACATGGTCTTACACTAGCTCTCAGAACATGGC
** * *
74930970 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATATCATGGCTGACGCCATGTCCCAGA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAT-GCCGATGCCATGTCCCAGA
74931035 CATGGTCTTACACTAGC
65 CATGGTCTTACACTAGC
74931052 ACACAGATCA
Statistics
Matches: 149, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
95 5 0.03
96 141 0.95
97 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (95 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCATGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCAGAACATGGC
Found at i:74931038 original size:144 final size:144
Alignment explanation
Indices: 74930778--74931061 Score: 351
Period size: 144 Copynumber: 2.0 Consensus size: 144
74930768 GGTGAATTGT
* * * *
74930778 CGATGCCATGTTCCAAAAATGGTCTTACACTGGCTCACATGTCGAGGCCAATTCCATATCCCAGA
1 CGATGCCATGTCCCAAAAATGGTCTTACACTGGCTCACATGACGAGGCCAATGCCATATCCCAAA
* * *
74930843 CATGGTCTTACACTAGCTTTCATAATGTGGCCGATGCCATGTCCTAGACATGGTCTTACACTAGC
66 CATGGTCTTACACTAGCTTTCATAATATGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGC
* *
74930908 GCACATATCAATGC
131 ACACAGATCAATGC
* * * * * *
74930922 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCA-GAAC-ATTGCCGATGCCATGTTCCA
1 CGATGCCATGTCCCAAAAATGGTCTTACACTGGCTCACATG-ACGA-GGCCAATGCCATATCCCA
* *
74930985 AACATGGTCTTACACTGGCTCTT-AT-ATCATGGCTGACGCCATGTCCCAGACATGGTCTTACAC
64 AACATGGTCTTACACTAGCT-TTCATAAT-ATGGCCGACGCCATGTCCCAGACATGGTCTTACAC
74931048 TAGCACACAGATCA
127 TAGCACACAGATCA
74931062 GCCAAATGTC
Statistics
Matches: 119, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
143 4 0.03
144 113 0.95
145 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (144 bp):
CGATGCCATGTCCCAAAAATGGTCTTACACTGGCTCACATGACGAGGCCAATGCCATATCCCAAA
CATGGTCTTACACTAGCTTTCATAATATGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGC
ACACAGATCAATGC
Found at i:74935931 original size:16 final size:16
Alignment explanation
Indices: 74935910--74935946 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
74935900 CTGGTCTAAT
74935910 GGGGCTGAGGTATTCA
1 GGGGCTGAGGTATTCA
74935926 GGGGCTGAGGTATTCA
1 GGGGCTGAGGTATTCA
74935942 GGGGC
1 GGGGC
74935947 ATCCTGGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.16, C:0.14, G:0.49, T:0.22
Consensus pattern (16 bp):
GGGGCTGAGGTATTCA
Found at i:74935988 original size:15 final size:15
Alignment explanation
Indices: 74935968--74936000 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
74935958 GCTCCTAATG
74935968 TGGCTGAGTACTGGA
1 TGGCTGAGTACTGGA
74935983 TGGCTGAGTACTGGA
1 TGGCTGAGTACTGGA
74935998 TGG
1 TGG
74936001 AGGCCACGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.42, T:0.27
Consensus pattern (15 bp):
TGGCTGAGTACTGGA
Found at i:74956071 original size:20 final size:20
Alignment explanation
Indices: 74956046--74956086 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
74956036 CTCTAGACTT
74956046 TTAACAGTATTGCAAATTAG
1 TTAACAGTATTGCAAATTAG
74956066 TTAACAGTATTGCAAATTAG
1 TTAACAGTATTGCAAATTAG
74956086 T
1 T
74956087 CCTGAGCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.37
Consensus pattern (20 bp):
TTAACAGTATTGCAAATTAG
Found at i:74973465 original size:29 final size:29
Alignment explanation
Indices: 74973423--74973632 Score: 233
Period size: 29 Copynumber: 7.2 Consensus size: 29
74973413 GTATTGATGC
**
74973423 CCATCGAATATGAAAACAGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* **
74973452 CCATCGAATATGAAAAAGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* *
74973481 CCATCGAATATGAAAAGGGATGGCTTCAA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* * *
74973510 CCATC-AATTAAAGAATAGAGATGGTTTCGA
1 CCATCGAA-T-ATGAAAAGGGATGGTTTCGA
* *
74973540 CCATCAAATATGAAAAGGGATGGCTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* * *
74973569 CCATTGAATATGCAAAGGGATGGTTTCAA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* *
74973598 CCATCGATTAAAGAAAAGGGATGGTTTCGA
1 CCATCGAAT-ATGAAAAGGGATGGTTTCGA
74973628 CCATC
1 CCATC
74973633 ATTTAGCAAA
Statistics
Matches: 149, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
28 2 0.01
29 102 0.68
30 43 0.29
31 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTTTCGA
Found at i:74973571 original size:88 final size:88
Alignment explanation
Indices: 74973434--74973633 Score: 294
Period size: 88 Copynumber: 2.3 Consensus size: 88
74973424 CATCGAATAT
* *
74973434 GAAAACAGATGGTTTCGACCATCGAATATGAAAAAGGATGGTGACGACCATCGAATATGAAAAGG
1 GAAAAGAGATGGTTTCGACCATCAAATATGAAAAAGGATGGTGACGACCATCGAATATGAAAAGG
74973499 GATGGCTTCAACCATCAATTAAA
66 GATGGCTTCAACCATCAATTAAA
* * * * *
74973522 GAATAGAGATGGTTTCGACCATCAAATATGAAAAGGGATGGCT-TCGACCATTGAATATGCAAAG
1 GAAAAGAGATGGTTTCGACCATCAAATATGAAAAAGGATGG-TGACGACCATCGAATATGAAAAG
* *
74973586 GGATGGTTTCAACCATCGATTAAA
65 GGATGGCTTCAACCATCAATTAAA
*
74973610 GAAAAGGGATGGTTTCGACCATCA
1 GAAAAGAGATGGTTTCGACCATCA
74973634 TTTAGCAAAC
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 99 0.99
89 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (88 bp):
GAAAAGAGATGGTTTCGACCATCAAATATGAAAAAGGATGGTGACGACCATCGAATATGAAAAGG
GATGGCTTCAACCATCAATTAAA
Found at i:74973614 original size:59 final size:57
Alignment explanation
Indices: 74973423--74973631 Score: 213
Period size: 59 Copynumber: 3.6 Consensus size: 57
74973413 GTATTGATGC
** * * * **
74973423 CCATCGAATATGAAAACAGATGGTTTCGACCATCGAATATGAAAAAGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGCTTCGACCATTGAATATG-AAAGGGATGGTTTCGA
* * * *
74973481 CCATCGAATATGAAAAGGGATGGCTTCAACCA-TCAATTAAAGAATAGAGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGCTTCGACCATTGAA-T-ATGAA-AGGGATGGTTTCGA
* *
74973540 CCATCAAATATGAAAAGGGATGGCTTCGACCATTGAATATGCAAAGGGATGGTTTCAA
1 CCATCGAATATGAAAAGGGATGGCTTCGACCATTGAATATG-AAAGGGATGGTTTCGA
* * *
74973598 CCATCGATTAAAGAAAAGGGATGGTTTCGACCAT
1 CCATCGAAT-ATGAAAAGGGATGGCTTCGACCAT
74973632 CATTTAGCAA
Statistics
Matches: 124, Mismatches: 21, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
57 2 0.02
58 52 0.42
59 67 0.54
60 3 0.02
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (57 bp):
CCATCGAATATGAAAAGGGATGGCTTCGACCATTGAATATGAAAGGGATGGTTTCGA
Found at i:74978295 original size:63 final size:63
Alignment explanation
Indices: 74978196--74978323 Score: 247
Period size: 63 Copynumber: 2.0 Consensus size: 63
74978186 AGCAAGGAGA
*
74978196 AAACCCAAACAAGCCAAGGGCCTAGTGACATGACCGACATGGAGATAGTCATTCAGTGGATGC
1 AAACCCAAACAAGCCAAAGGCCTAGTGACATGACCGACATGGAGATAGTCATTCAGTGGATGC
74978259 AAACCCAAACAAGCCAAAGGCCTAGTGACATGACCGACATGGAGATAGTCATTCAGTGGATGC
1 AAACCCAAACAAGCCAAAGGCCTAGTGACATGACCGACATGGAGATAGTCATTCAGTGGATGC
74978322 AA
1 AA
74978324 GGAATGACAC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (63 bp):
AAACCCAAACAAGCCAAAGGCCTAGTGACATGACCGACATGGAGATAGTCATTCAGTGGATGC
Found at i:74984963 original size:40 final size:40
Alignment explanation
Indices: 74984908--74985005 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
74984898 TGGATGATAA
* *
74984908 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
*
74984948 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
* *
74984988 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74985006 TACTTGGCTT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 15 0.29
40 36 0.71
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
Found at i:74986394 original size:16 final size:16
Alignment explanation
Indices: 74986373--74986405 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
74986363 AGGAAAATAT
74986373 CGAAATGCTGAAAAGC
1 CGAAATGCTGAAAAGC
74986389 CGAAATGCTGAAAAGC
1 CGAAATGCTGAAAAGC
74986405 C
1 C
74986406 AGAAGTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.21, G:0.24, T:0.12
Consensus pattern (16 bp):
CGAAATGCTGAAAAGC
Found at i:74986663 original size:28 final size:28
Alignment explanation
Indices: 74986630--74986696 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
74986620 GACTATGAGT
* *
74986630 GTGATTGGGCCTGATGGGTCATATGAAA
1 GTGATTGGGCCCGATGGGCCATATGAAA
*
74986658 GTGATTGGGCCCGATGGGCCATATGAAT
1 GTGATTGGGCCCGATGGGCCATATGAAA
*
74986686 GAGATTGGGCC
1 GTGATTGGGCC
74986697 GAAAGGGGCC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.25
Consensus pattern (28 bp):
GTGATTGGGCCCGATGGGCCATATGAAA
Found at i:74987988 original size:17 final size:18
Alignment explanation
Indices: 74987955--74987988 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
74987945 TTCAAAGAAG
74987955 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
74987973 GGTTTTCAAT-AAAACA
1 GGTTTTCAATGAAAACA
74987989 CTTCAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:74994729 original size:17 final size:18
Alignment explanation
Indices: 74994696--74994729 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74994686 TTCAAAGAAG
74994696 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
74994714 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
74994730 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:75002994 original size:17 final size:17
Alignment explanation
Indices: 75002968--75003000 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75002958 TTATTATAAT
*
75002968 TGTGTGTATATATTATG
1 TGTGTATATATATTATG
75002985 TGTGTATATATATTAT
1 TGTGTATATATATTAT
75003001 ATGCGTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (17 bp):
TGTGTATATATATTATG
Found at i:75003008 original size:17 final size:17
Alignment explanation
Indices: 75002974--75003009 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
75002964 TAATTGTGTG
* *
75002974 TATATATTATGTGTGTA
1 TATATATTATATGCGTA
75002991 TATATATTATATGCGTA
1 TATATATTATATGCGTA
75003008 TA
1 TA
75003010 AATAATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.50
Consensus pattern (17 bp):
TATATATTATATGCGTA
Found at i:75007622 original size:43 final size:43
Alignment explanation
Indices: 75007536--75007622 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
75007526 AAATTATATG
****
75007536 ATCTAAACTCATTGAGTTGGTCTGAGTTCATGATATTTGTGAC
1 ATCTAAACTCATTGAGTTGGTCTGAGTTCATGATACACATGAC
* *
75007579 ATCTAAGCTCATTGAGTTGGTCTGAGTTCATGATGCACATGAC
1 ATCTAAACTCATTGAGTTGGTCTGAGTTCATGATACACATGAC
75007622 A
1 A
75007623 CATGTAATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (43 bp):
ATCTAAACTCATTGAGTTGGTCTGAGTTCATGATACACATGAC
Found at i:75024036 original size:18 final size:18
Alignment explanation
Indices: 75023999--75024037 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
75023989 TTCAAAATCA
*
75023999 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
75024017 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
75024035 AAA
1 AAA
75024038 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:75029799 original size:39 final size:39
Alignment explanation
Indices: 75029739--75029837 Score: 137
Period size: 39 Copynumber: 2.5 Consensus size: 39
75029729 ACAAAGCATG
*
75029739 CGGGACTTTAAGCCC-AGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGA-ATATAACACCAGCACGAATGCCTT
*
75029780 CGGGACTTAGCCCGAATATAACGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGAATATAACACCAGCACGAATGCCTT
*
75029819 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGAATAT
75029838 TTTTCCAGCA
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
39 45 0.83
40 3 0.06
41 6 0.11
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGAATATAACACCAGCACGAATGCCTT
Found at i:75029873 original size:39 final size:39
Alignment explanation
Indices: 75029830--75029961 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
75029820 GGGACTTAGC
* * *
75029830 CCGGATATTTTTCCAGCACT-TAGCCTGTGGACTTTAAGT
1 CCGGATATATTTCCAGCA-TAAAGCCTGTGGACTTCAAGT
75029869 CCGGATATATTTCCAGCATAAAGCCTGTGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGTGGACTTCAAGT
*
75029908 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGTGGACTTCAAGT
*
75029947 CCGGATATTTTTCCA
1 CCGGATATATTTCCA
75029962 ATACCATGCA
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 1 0.01
39 86 0.99
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATAAAGCCTGTGGACTTCAAGT
Found at i:75029877 original size:78 final size:77
Alignment explanation
Indices: 75029795--75029954 Score: 164
Period size: 78 Copynumber: 2.1 Consensus size: 77
75029785 CTTAGCCCGA
* * *
75029795 ATATAACGCCAGCACGAATGCCT-TCGGGACTT-AGCCCGGATATTTTTCCAGCACT-TAGCCTG
1 ATATAACGCCAGCA-GAAAGCCTGT--GGACTTAAGCCCGGATATATTTCCAGCA-TAAAGCCTG
* *
75029857 TGGACTTTAAGTCCGG
62 CGGACTTCAAGTCCGG
*** * *
75029873 ATATATTTCCAGCATAAAGCCTGTGGACTTCAAGTCCGGATATATTTCCAGCATAAAGCCTGCGG
1 ATATAACGCCAGCAGAAAGCCTGTGGACTT-AAGCCCGGATATATTTCCAGCATAAAGCCTGCGG
75029938 ACTTCAAGTCCGG
65 ACTTCAAGTCCGG
75029951 ATAT
1 ATAT
75029955 TTTTCCAATA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
76 6 0.09
77 7 0.10
78 55 0.81
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (77 bp):
ATATAACGCCAGCAGAAAGCCTGTGGACTTAAGCCCGGATATATTTCCAGCATAAAGCCTGCGGA
CTTCAAGTCCGG
Found at i:75049471 original size:4 final size:4
Alignment explanation
Indices: 75049462--75049490 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
75049452 TGCTTTCCCT
75049462 CATC CATC CATC CATC CATC CATC CATC C
1 CATC CATC CATC CATC CATC CATC CATC C
75049491 TCGCTCCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.52, G:0.00, T:0.24
Consensus pattern (4 bp):
CATC
Found at i:75060642 original size:47 final size:47
Alignment explanation
Indices: 75060583--75060673 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
75060573 GTGTCCCTAG
* *
75060583 CCGTGTGGTTCTTAAGTACAAACAGTGAGTTATATGGCCTGGGCCCA
1 CCGTGTGATTCTTAAGTACAAACAGTGAGTTACATGGCCTGGGCCCA
75060630 CCGTGTGATTCTTAAGTACAAACAGTGAGTTACATGGCCTGGGC
1 CCGTGTGATTCTTAAGTACAAACAGTGAGTTACATGGCCTGGGC
75060674 ATTTGCCCGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (47 bp):
CCGTGTGATTCTTAAGTACAAACAGTGAGTTACATGGCCTGGGCCCA
Found at i:75060744 original size:62 final size:62
Alignment explanation
Indices: 75060631--75060822 Score: 276
Period size: 62 Copynumber: 3.1 Consensus size: 62
75060621 CTGGGCCCAC
* * * * *** *
75060631 CGTGTGATTCTTAAGTACAAACAGTGAGTTACATGGCCTGGGCATTTGCCCGTGTTCCTGGT
1 CGTGTGGTTCTTAAGTACAAATAGTGAGTTACACGGCCTAGGCACACGCCCGTGTCCCTGGT
*
75060693 CGTGTGGTTCTTAAGTACAAATAGTGAGTTACACGACCTAGGCACACGCCCGTGTCCCTGGT
1 CGTGTGGTTCTTAAGTACAAATAGTGAGTTACACGGCCTAGGCACACGCCCGTGTCCCTGGT
* * *
75060755 CGTGTGGTTCTTAAGTACAAATAGTGAGTTACACGGCCTTGGCACACTCCCGTGTCCCTGGC
1 CGTGTGGTTCTTAAGTACAAATAGTGAGTTACACGGCCTAGGCACACGCCCGTGTCCCTGGT
75060817 CGTGTG
1 CGTGTG
75060823 AACCCTGCAC
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 117 1.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (62 bp):
CGTGTGGTTCTTAAGTACAAATAGTGAGTTACACGGCCTAGGCACACGCCCGTGTCCCTGGT
Found at i:75061448 original size:5 final size:5
Alignment explanation
Indices: 75061438--75061463 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
75061428 TGATTGCATG
75061438 AAGAA AAGAA AAGAA AAGAA AAGAA A
1 AAGAA AAGAA AAGAA AAGAA AAGAA A
75061464 TTTGAGAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:75070537 original size:6 final size:6
Alignment explanation
Indices: 75070515--75070559 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
75070505 ATAAGTTTTC
75070515 AAAAAT AAAAGAT -AAAAT AAAAAAT AAAAAT AAAAAT -AAAAT AAA
1 AAAAAT AAAA-AT AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAA
75070560 TGGACTCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
5 7 0.20
6 21 0.60
7 7 0.20
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:75070539 original size:19 final size:17
Alignment explanation
Indices: 75070515--75070559 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 17
75070505 ATAAGTTTTC
75070515 AAAAATAAAAGATAAAATA
1 AAAAATAAAA-ATAAAA-A
75070534 AAAAATAAAAATAAAAA
1 AAAAATAAAAATAAAAA
*
75070551 TAAAATAAA
1 AAAAATAAA
75070560 TGGACTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 9 0.36
18 6 0.24
19 10 0.40
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (17 bp):
AAAAATAAAAATAAAAA
Found at i:75072353 original size:20 final size:20
Alignment explanation
Indices: 75072330--75072368 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
75072320 GGGGTATTGC
75072330 GAATGGCTGGG-GTGTGGGTG
1 GAATGG-TGGGTGTGTGGGTG
75072350 GAATGGTGGGTGTGTGGGT
1 GAATGGTGGGTGTGTGGGT
75072369 AGGGAGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.10, C:0.03, G:0.59, T:0.28
Consensus pattern (20 bp):
GAATGGTGGGTGTGTGGGTG
Found at i:75077030 original size:30 final size:30
Alignment explanation
Indices: 75076996--75077052 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
75076986 CACGGCCATG
75076996 ACACACGGGCGTGTAG-TCTACCCGTGTGTC
1 ACACACGGGCGTGTAGAT-TACCCGTGTGTC
*
75077026 ACACACGGGCGTGTGGATTACCCGTGT
1 ACACACGGGCGTGTAGATTACCCGTGT
75077053 AGAAGTTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (30 bp):
ACACACGGGCGTGTAGATTACCCGTGTGTC
Found at i:75077492 original size:62 final size:62
Alignment explanation
Indices: 75077370--75077838 Score: 490
Period size: 62 Copynumber: 7.5 Consensus size: 62
75077360 CCTACCACAT
* * * * * *
75077370 GGCCTGGGCATACGTCCGTGTGCCTTGGCCGTGTGGTTTTTAAGCACAAATAGCGAGTTACAC
1 GGCCTGGGCACACGCCCGTGT-CCCTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACAC
* * * ** * * *
75077433 GACCTGGGCACACGTCCGTGTCCCTGACCGTGTAATTGTTAACTACAAACAGTGAGTTACAC
1 GGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACAC
** * * * *
75077495 GGCCTAAGCACACGCTCGTATCCCTGGTCGTGTGGTTCTTAAGTACAAACT-GTGAATTACAC
1 GGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTCTTAAGTACAAA-TAGTGAGTTACAC
* * * *
75077557 GGCCTGGGCATACGCCCGTGTCCTTAGCCATGTGGTTCTTAAGTACAAATAGTGAGTTACAC
1 GGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACAC
* * * *
75077619 AGCCTGGGCACACGCCCGTATCCCTGGCCGTGTGGTTCTTAAGTACAAAAAGTGAGTTACAA
1 GGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACAC
* ** * * *
75077681 GCCCTGAACACACACCCGTGTCCCTGGCCGTGTGGTTCTTAAGTATAAATAATGAGTTACAC
1 GGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACAC
* * * * ** * **
75077743 GGCTTGGGCACATGCTCATGTCCCTGGTTGTATGGTTCTTAAGTACAAGCAGTGAGTTACAC
1 GGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACAC
* * * *
75077805 AGCTTGGGCACACGCTCGTGTCCCTAGCCGTGTG
1 GGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTG
75077839 AACCCTACAC
Statistics
Matches: 329, Mismatches: 75, Indels: 5
0.80 0.18 0.01
Matches are distributed among these distances:
61 1 0.00
62 309 0.94
63 19 0.06
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (62 bp):
GGCCTGGGCACACGCCCGTGTCCCTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACAC
Found at i:75077715 original size:186 final size:186
Alignment explanation
Indices: 75077370--75077839 Score: 550
Period size: 186 Copynumber: 2.5 Consensus size: 186
75077360 CCTACCACAT
* * * *
75077370 GGCCTGGGCATACGTCCGTGTGCCTTGGCCGTGTGGTTTTTAAGCACAAATAGCGAGTTACAC-G
1 GGCCTGGGCATACGCCCGTGT-CCTTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACACAG
* * * * * * *
75077434 ACCTGGGCACACGTCCGTGTCCCTGACCGTGTAATTGTTAACTACAAACAGTGAGTTACACGGCC
65 -CCTGGGCACACGCCCGTGTCCCTGGCCGTGTGATTCTTAACTACAAAAAGTGAGTTACAAGCCC
* * * *
75077499 TAAGCACACGCTCGTATCCCTGGTCGTGTGGTTCTTAAGTACAAACT-GTGAATTACAC
129 TAAGCACACACCCGTATCCCTGGCCGTGTGGTTCTTAAGTACAAA-TAATGAATTACAC
* *
75077557 GGCCTGGGCATACGCCCGTGTCCTTAGCCATGTGGTTCTTAAGTACAAATAGTGAGTTACACAGC
1 GGCCTGGGCATACGCCCGTGTCCTTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACACAGC
* * *
75077622 CTGGGCACACGCCCGTATCCCTGGCCGTGTGGTTCTTAAGTACAAAAAGTGAGTTACAAGCCCTG
66 CTGGGCACACGCCCGTGTCCCTGGCCGTGTGATTCTTAACTACAAAAAGTGAGTTACAAGCCCT-
* * *
75077687 AA-CACACACCCGTGTCCCTGGCCGTGTGGTTCTTAAGTATAAATAATGAGTTACAC
130 AAGCACACACCCGTATCCCTGGCCGTGTGGTTCTTAAGTACAAATAATGAATTACAC
* * * * * * ** * **
75077743 GGCTTGGGCACATGCTCATGTCCCTGGTTGTATGGTTCTTAAGTACAAGCAGTGAGTTACACAGC
1 GGCCTGGGCATACGCCCGTGTCCTTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACACAGC
* * *
75077808 TTGGGCACACGCTCGTGTCCCTAGCCGTGTGA
66 CTGGGCACACGCCCGTGTCCCTGGCCGTGTGA
75077840 ACCCTACACT
Statistics
Matches: 239, Mismatches: 41, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
185 1 0.00
186 215 0.90
187 23 0.10
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (186 bp):
GGCCTGGGCATACGCCCGTGTCCTTGGCCGTGTGGTTCTTAAGTACAAATAGTGAGTTACACAGC
CTGGGCACACGCCCGTGTCCCTGGCCGTGTGATTCTTAACTACAAAAAGTGAGTTACAAGCCCTA
AGCACACACCCGTATCCCTGGCCGTGTGGTTCTTAAGTACAAATAATGAATTACAC
Found at i:75079687 original size:160 final size:160
Alignment explanation
Indices: 75079450--75079741 Score: 383
Period size: 160 Copynumber: 1.8 Consensus size: 160
75079440 TCTAATTCAC
* * * *
75079450 CAATTAAACTTTTTGAGGGAGAAGCTTTTTTTATAAGCTTAAATTAAGAATTATTCCTTATATGA
1 CAATTAAAATTTTAGAGGAAGAAGCTTTTTTTAGAAGCTTAAATTAAGAATTATTCCTTATATGA
* * *
75079515 ATTACTTAATTTAACGAATTTCT-TAATCTCAGTCTTTGATTTGGATAACAAATTTTCAAACTTG
66 ATTACCTAATTTAACGAATTT-TGTAATCTCAGTCCTTGATTTGGACAACAAATTTTCAAACTTG
75079579 ATTTCCACCCCAATTTCCCCCTGTAATTGAT
130 ATTTCCACCCCAATTTCCCCCTGTAATTGAT
* * * * *
75079610 CAATTAAAATTTTAGAGGAAGAAG-TTTTTTTACGATGCTTCAAA-TAAGAATTCTTTCTTTTTT
1 CAATTAAAATTTTAGAGGAAGAAGCTTTTTTTA-GAAGCTT-AAATTAAGAATTATTCCTTATAT
* * * **
75079673 GAATTACCTAATTTAATGAATTTTGTAATCTTAGTCCTTGATTTGGACAATAGTTTTTCAAACTT
64 GAATTACCTAATTTAACGAATTTTGTAATCTCAGTCCTTGATTTGGACAACAAATTTTCAAACTT
75079738 GATT
129 GATT
75079742 CCCATCCTTA
Statistics
Matches: 112, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
159 9 0.08
160 100 0.89
161 3 0.03
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.43
Consensus pattern (160 bp):
CAATTAAAATTTTAGAGGAAGAAGCTTTTTTTAGAAGCTTAAATTAAGAATTATTCCTTATATGA
ATTACCTAATTTAACGAATTTTGTAATCTCAGTCCTTGATTTGGACAACAAATTTTCAAACTTGA
TTTCCACCCCAATTTCCCCCTGTAATTGAT
Found at i:75085100 original size:36 final size:37
Alignment explanation
Indices: 75085044--75085114 Score: 126
Period size: 36 Copynumber: 1.9 Consensus size: 37
75085034 GTTTTTTTTT
75085044 AAAAGGCGAAAAAAGTTAAAATAAACACACAAACTGG
1 AAAAGGCGAAAAAAGTTAAAATAAACACACAAACTGG
*
75085081 AAAAGGTG-AAAAAGTTAAAATAAACACACAAACT
1 AAAAGGCGAAAAAAGTTAAAATAAACACACAAACT
75085115 AACATAAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 26 0.79
37 7 0.21
ACGTcount: A:0.61, C:0.13, G:0.14, T:0.13
Consensus pattern (37 bp):
AAAAGGCGAAAAAAGTTAAAATAAACACACAAACTGG
Found at i:75092281 original size:4 final size:4
Alignment explanation
Indices: 75092272--75092352 Score: 62
Period size: 4 Copynumber: 20.0 Consensus size: 4
75092262 TGTCTTTCTA
*
75092272 CTTT CTTT CTTT CCCTT -TTT C-TT -TTT CTTT CTTT C-TT CTTT CTGTTT
1 CTTT CTTT CTTT -CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C--TTT
* *
75092319 CGTTT CGTTT CTAT CTTT CTTT CTTT ATTT CTTT
1 C-TTT C-TTT CTTT CTTT CTTT CTTT CTTT CTTT
75092353 TTATTAATTA
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
3 9 0.14
4 38 0.59
5 13 0.20
6 4 0.06
ACGTcount: A:0.02, C:0.23, G:0.04, T:0.70
Consensus pattern (4 bp):
CTTT
Found at i:75092324 original size:22 final size:21
Alignment explanation
Indices: 75092264--75092351 Score: 74
Period size: 22 Copynumber: 4.0 Consensus size: 21
75092254 CCTAGCCTTG
75092264 TCTTTCTACTTTCTTTCTTTCCCT
1 TCTTTCT-CTTTCTTTCTTT--CT
*
75092288 T-TTTCTTTTTCTTTCTTTCT
1 TCTTTCTCTTTCTTTCTTTCT
*
75092308 TCTTTCTGTTTCGTTTCGTTTCT
1 TCTTTCTCTTTC-TTTC-TTTCT
*
75092331 ATC-TT-TCTTTCTTTATTTCT
1 -TCTTTCTCTTTCTTTCTTTCT
75092351 T
1 T
75092352 TTTATTAATT
Statistics
Matches: 56, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
19 1 0.02
20 8 0.14
21 12 0.21
22 20 0.36
23 12 0.21
24 3 0.05
ACGTcount: A:0.03, C:0.24, G:0.03, T:0.69
Consensus pattern (21 bp):
TCTTTCTCTTTCTTTCTTTCT
Found at i:75095234 original size:26 final size:26
Alignment explanation
Indices: 75095203--75095310 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
75095193 TGAAATTCCC
*
75095203 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
75095229 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75095255 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
75095281 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75095307 ATCA
1 ATCA
75095311 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75103049 original size:27 final size:27
Alignment explanation
Indices: 75103014--75103065 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
75103004 GCAGAAGGAT
*
75103014 CAACTCCTTTCAATCCTAAAAATTCAC
1 CAACGCCTTTCAATCCTAAAAATTCAC
*
75103041 CAACGCCTTTCAATCCTAAGAATTC
1 CAACGCCTTTCAATCCTAAAAATTC
75103066 TATTGCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.33, G:0.04, T:0.29
Consensus pattern (27 bp):
CAACGCCTTTCAATCCTAAAAATTCAC
Found at i:75104722 original size:40 final size:40
Alignment explanation
Indices: 75104703--75104782 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
75104693 TTCATGAATA
75104703 CATAATTCATGTATTTCATTTGCATATTTCAATTCACTAT
1 CATAATTCATGTATTTCATTTGCATATTTCAATTCACTAT
75104743 CATAATTCATGTATTTCATTTGCATATTTCAATTCACTAT
1 CATAATTCATGTATTTCATTTGCATATTTCAATTCACTAT
75104783 TTCATTTTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.05, T:0.47
Consensus pattern (40 bp):
CATAATTCATGTATTTCATTTGCATATTTCAATTCACTAT
Found at i:75105435 original size:4 final size:4
Alignment explanation
Indices: 75105426--75105516 Score: 55
Period size: 4 Copynumber: 22.0 Consensus size: 4
75105416 TGTCTTTCTA
* *
75105426 CTTT CTTT CTTT CCCTT -TTT C-TT -TTT CTTT TTTT C-TT CTTT CTGTTT
1 CTTT CTTT CTTT -CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C--TTT
* *
75105473 CGTTT CGTTT CGTTT CGTTT CTAT CTTT CTTT CTTT ATTT CTTT
1 C-TTT C-TTT C-TTT C-TTT CTTT CTTT CTTT CTTT CTTT CTTT
75105517 TTATTAATTA
Statistics
Matches: 72, Mismatches: 8, Indels: 14
0.77 0.09 0.15
Matches are distributed among these distances:
3 9 0.12
4 36 0.50
5 23 0.32
6 4 0.06
ACGTcount: A:0.02, C:0.22, G:0.05, T:0.70
Consensus pattern (4 bp):
CTTT
Found at i:75105484 original size:10 final size:10
Alignment explanation
Indices: 75105464--75105493 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
75105454 TTTTTTCTTC
75105464 TTTCTGTTTCG
1 TTTC-GTTTCG
75105475 TTTCGTTTCG
1 TTTCGTTTCG
75105485 TTTCGTTTC
1 TTTCGTTTC
75105494 TATCTTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.00, C:0.20, G:0.17, T:0.63
Consensus pattern (10 bp):
TTTCGTTTCG
Found at i:75105487 original size:15 final size:16
Alignment explanation
Indices: 75105464--75105493 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75105454 TTTTTTCTTC
75105464 TTTCTGTTTCGTTTCG
1 TTTCTGTTTCGTTTCG
75105480 TTTC-GTTTCGTTTC
1 TTTCTGTTTCGTTTC
75105494 TATCTTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.00, C:0.20, G:0.17, T:0.63
Consensus pattern (16 bp):
TTTCTGTTTCGTTTCG
Found at i:75110201 original size:9 final size:9
Alignment explanation
Indices: 75110187--75110214 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
75110177 AAATTAGGGA
75110187 TTTTTTAAT
1 TTTTTTAAT
75110196 TTTTTTAAT
1 TTTTTTAAT
75110205 TTTTTTAAT
1 TTTTTTAAT
75110214 T
1 T
75110215 GGATGTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:75111687 original size:21 final size:21
Alignment explanation
Indices: 75111661--75111771 Score: 62
Period size: 21 Copynumber: 5.3 Consensus size: 21
75111651 CACAAAAGCA
*
75111661 CATAAGTGCTAAACAGAAACC
1 CATAAGAGCTAAACAGAAACC
* * * *
75111682 CATAAGTGTTGAA-AGAAAGCT
1 CATAAGAGCTAAACAGAAA-CC
* * *
75111703 CGTAAAAGCTTAACAGAAACC
1 CATAAGAGCTAAACAGAAACC
* * * * *
75111724 CATAAGGGTTAAACTGAAGCT
1 CATAAGAGCTAAACAGAAACC
* *
75111745 CAAAAGAGCTGAACAGAAACC
1 CATAAGAGCTAAACAGAAACC
*
75111766 TATAAG
1 CATAAG
75111772 GGTTAAACTA
Statistics
Matches: 62, Mismatches: 26, Indels: 4
0.67 0.28 0.04
Matches are distributed among these distances:
20 5 0.08
21 52 0.84
22 5 0.08
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.17
Consensus pattern (21 bp):
CATAAGAGCTAAACAGAAACC
Found at i:75111822 original size:42 final size:42
Alignment explanation
Indices: 75111672--75111825 Score: 181
Period size: 42 Copynumber: 3.7 Consensus size: 42
75111662 ATAAGTGCTA
* * *
75111672 AACAGAAACCCATAAGTGTTGAAA--GAAAGCTCGTAAA-AGCTT
1 AACAGAAACCCATAAGGGTT-AAACTG-AAGCTC-AAAAGAGCTG
75111714 AACAGAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTG
1 AACAGAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTG
* *
75111756 AACAGAAACCTATAAGGGTTAAACT-ACAGCTTAAAAGAGCTG
1 AACAGAAACCCATAAGGGTTAAACTGA-AGCTCAAAAGAGCTG
* *
75111798 AACGGAAACCCATAAGGGCTAAACTGAA
1 AACAGAAACCCATAAGGGTTAAACTGAA
75111826 ATTCATATGA
Statistics
Matches: 99, Mismatches: 8, Indels: 10
0.85 0.07 0.09
Matches are distributed among these distances:
41 7 0.07
42 90 0.91
43 2 0.02
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.16
Consensus pattern (42 bp):
AACAGAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTG
Found at i:75113927 original size:31 final size:29
Alignment explanation
Indices: 75113873--75113941 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 29
75113863 ATATACTAAA
*
75113873 AATAATAATAATATATCTTATTAAA-ATATT
1 AATAA-AATAATATATCTAATTAAATA-ATT
75113903 AATAAAATAATATTTATCTAATTAAATAATT
1 AATAAAATAATA--TATCTAATTAAATAATT
75113934 -ATAAAATA
1 AATAAAATA
75113942 TCACCAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 13 0.37
31 14 0.40
32 1 0.03
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (29 bp):
AATAAAATAATATATCTAATTAAATAATT
Done.