Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 238 of 325
Found at i:75115028 original size:14 final size:14
Alignment explanation
Indices: 75115009--75115035 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75114999 TTTGATTTTT
75115009 ATTAGATTAAAACC
1 ATTAGATTAAAACC
75115023 ATTAGATTAAAAC
1 ATTAGATTAAAAC
75115036 TGCTCTCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (14 bp):
ATTAGATTAAAACC
Found at i:75115462 original size:81 final size:82
Alignment explanation
Indices: 75115279--75115481 Score: 336
Period size: 82 Copynumber: 2.5 Consensus size: 82
75115269 GGTATACATC
**
75115279 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAGTAGT
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAAAAGT
**
75115344 AAGATGTTAACTGACCA
66 AAGATGTTAACAAACCA
* *
75115361 TTTTAACAAATCATTTCAAAAAACAAACAAAATATGTTATGCTAACAAAATGATCCTATAAAAGT
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAAAAGT
75115426 AAGATGTTAA-AAACCA
66 AAGATGTTAACAAACCA
75115442 TTTCAACAAATCATTTCAAAAAAACAAACAAAATATGTTA
1 TTTCAACAAATCATTTC-AAAAAACAAACAAAATATGTTA
75115482 ACCAGCTTAA
Statistics
Matches: 113, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
81 20 0.18
82 93 0.82
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.28
Consensus pattern (82 bp):
TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAAAAGT
AAGATGTTAACAAACCA
Found at i:75115899 original size:159 final size:156
Alignment explanation
Indices: 75115533--75115900 Score: 416
Period size: 159 Copynumber: 2.3 Consensus size: 156
75115523 TTCTTGTGTG
* ** ** * *
75115533 TCTTTTTTTGGCTTCTAGTTCTCATACTCACACTAGACTGAGAAAAAAATCAGAACCCCAAATTA
1 TCTTTTTTGGGCTTCTAGTTCTTGTACTCGTACTAGACTAAGAAAAAAATCAAAACCCCAAATTA
* * * * * *
75115598 GATTTAGATAATTTGGAATTGAAATTTAAAAAGTGTTTATGATATACCTATGATCTAGTTGTGTT
66 GATTAAAATAATTTGGAATTGAAATTTAAAAAGTGTATACGATATACCTATGATCCAGTTGTATT
* *
75115663 AGGCTTAATGCATGGTGTTCTGTTGT
131 AGGCTAAATGCATGGTGTTATGTTGT
* * * * * *
75115689 TCTTTTTTTGTCTTCTAGTTCATGTACTCGTACTATACTAAGACCAAAAAAATCAAAACCCGAAG
1 TCTTTTTTGGGCTTCTAGTTCTTGTACTCGTACTAGACTAAG---AAAAAAATCAAAACCCCAAA
* * *
75115754 TTAGATTAAAATATTTTTGAATTG-AATTTAAAATAGTGTATACGATATATCTATGATCCAGTTG
63 TTAGATTAAAATAATTTGGAATTGAAATTTAAAA-AGTGTATACGATATACCTATGATCCAGTTG
75115818 TATTAGGCTAAATGCATGGTGTTATGTTGT
127 TATTAGGCTAAATGCATGGTGTTATGTTGT
*
75115848 T-TTTTTTGGGGGGGCTTCTAGTTCTTGTACTCGTACTAGAATAAGATAAAAAA
1 TCTTTTTT----GGGCTTCTAGTTCTTGTACTCGTACTAGACTAAGA-AAAAAA
75115901 AATGAGAACT
Statistics
Matches: 176, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
156 34 0.19
158 15 0.09
159 92 0.52
160 6 0.03
162 29 0.16
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.39
Consensus pattern (156 bp):
TCTTTTTTGGGCTTCTAGTTCTTGTACTCGTACTAGACTAAGAAAAAAATCAAAACCCCAAATTA
GATTAAAATAATTTGGAATTGAAATTTAAAAAGTGTATACGATATACCTATGATCCAGTTGTATT
AGGCTAAATGCATGGTGTTATGTTGT
Found at i:75120634 original size:18 final size:18
Alignment explanation
Indices: 75120613--75120648 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
75120603 TCAGCAACCT
*
75120613 CACCACCTTCACCCTCAC
1 CACCACCCTCACCCTCAC
75120631 CACCACCCTCACCCTCAC
1 CACCACCCTCACCCTCAC
75120649 TCTCGCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.64, G:0.00, T:0.14
Consensus pattern (18 bp):
CACCACCCTCACCCTCAC
Found at i:75120789 original size:17 final size:17
Alignment explanation
Indices: 75120767--75120801 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
75120757 TAGCAGTGTC
75120767 AATCTCATACCCTACAT
1 AATCTCATACCCTACAT
75120784 AATCTCATACCCTACAT
1 AATCTCATACCCTACAT
75120801 A
1 A
75120802 TGAGTCTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.34, G:0.00, T:0.29
Consensus pattern (17 bp):
AATCTCATACCCTACAT
Found at i:75123148 original size:10 final size:9
Alignment explanation
Indices: 75123118--75123152 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
75123108 CTAGTTAGTG
75123118 TTTAACTTGT
1 TTTAA-TTGT
*
75123128 TTTAATTTT
1 TTTAATTGT
75123137 TTTAATTGT
1 TTTAATTGT
75123146 TTTAATT
1 TTTAATT
75123153 ATGAGTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.69
Consensus pattern (9 bp):
TTTAATTGT
Found at i:75124619 original size:7 final size:6
Alignment explanation
Indices: 75124604--75124637 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
75124594 TAGGTTTCCA
* *
75124604 AAAATG AAAATG GAAATG AAAGTG AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
75124638 CTTGCAATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.65, C:0.00, G:0.21, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:75125103 original size:30 final size:30
Alignment explanation
Indices: 75125067--75125129 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
75125057 ACTTAACAAG
75125067 CAAATGTCCCTAAAATAATAACAAAATTAA
1 CAAATGTCCCTAAAATAATAACAAAATTAA
** *
75125097 CAAATGTCTTTAAAGTAATAACAAAATTAA
1 CAAATGTCCCTAAAATAATAACAAAATTAA
75125127 CAA
1 CAA
75125130 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGTCCCTAAAATAATAACAAAATTAA
Found at i:75125520 original size:26 final size:25
Alignment explanation
Indices: 75125468--75125530 Score: 90
Period size: 26 Copynumber: 2.5 Consensus size: 25
75125458 ACAAATTTTC
*
75125468 TCAAAATTTTACCGCGGTAAAATTG
1 TCAAAATTTTATCGCGGTAAAATTG
*
75125493 TCAAAATTTTATCGGGAGTAAAATTG
1 TCAAAATTTTATCGCG-GTAAAATTG
*
75125519 TCAAAACTTTAT
1 TCAAAATTTTAT
75125531 TGAGATAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 14 0.41
26 20 0.59
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (25 bp):
TCAAAATTTTATCGCGGTAAAATTG
Found at i:75130223 original size:21 final size:22
Alignment explanation
Indices: 75130199--75130243 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
75130189 ATAAAAAATC
*
75130199 ATTTT-TATAAAATAATATTTT
1 ATTTTCTAAAAAATAATATTTT
75130220 ATTTTCCCTAAAAAATAATATTTT
1 ATTTT--CTAAAAAATAATATTTT
75130244 TTTAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
24 15 0.75
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTTTCTAAAAAATAATATTTT
Found at i:75132020 original size:53 final size:53
Alignment explanation
Indices: 75131879--75132044 Score: 203
Period size: 53 Copynumber: 3.1 Consensus size: 53
75131869 GACGAAAAAT
* * **
75131879 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTAGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
75131931 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * * *
75131984 ATGTGATAATGTGATTCCGTATAAGACTAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
75132038 TATGTGA
1 -ATGTGA
75132045 ACCGTGTAAG
Statistics
Matches: 101, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 79 0.78
54 1 0.01
55 6 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:75133896 original size:28 final size:29
Alignment explanation
Indices: 75133851--75133908 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 29
75133841 CATAAACCCA
* *
75133851 TTTTAAGAATATTCATATTAATTTTTTATT
1 TTTTAAAAATATTCATATT-ATTTTTAATT
75133881 TTTTAAAAATA-T-ATATTATTTTTAATT
1 TTTTAAAAATATTCATATTATTTTTAATT
75133908 T
1 T
75133909 AATATTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 10 0.38
28 5 0.19
29 1 0.04
30 10 0.38
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (29 bp):
TTTTAAAAATATTCATATTATTTTTAATT
Found at i:75134444 original size:25 final size:24
Alignment explanation
Indices: 75134406--75134452 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
75134396 GATTACAATT
*
75134406 TTAAAATTAAAAAAAATAAAAGGA
1 TTAAAAATAAAAAAAATAAAAGGA
*
75134430 TTAAAAATAACAAAAAATTAAAG
1 TTAAAAATAA-AAAAAATAAAAG
75134453 TATAAGGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.21
Consensus pattern (24 bp):
TTAAAAATAAAAAAAATAAAAGGA
Found at i:75143012 original size:25 final size:25
Alignment explanation
Indices: 75142984--75143063 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
75142974 TTACAAAGGG
**
75142984 AAAGTCCTAATCTAATTCCTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
*
75143009 AAAGTCCTAGTAGAATTCCTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
* *
75143034 AAAGTTCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
75143059 AAAGT
1 AAAGT
75143064 TTATAAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCCTAATTT
Found at i:75145119 original size:22 final size:22
Alignment explanation
Indices: 75145094--75145137 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
75145084 TGAAAGCATT
75145094 TTTCTTTAGAAGAGATGTTAAG
1 TTTCTTTAGAAGAGATGTTAAG
75145116 TTTCTTTAGAAGAGATGTTAAG
1 TTTCTTTAGAAGAGATGTTAAG
75145138 GGTTCAGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.41
Consensus pattern (22 bp):
TTTCTTTAGAAGAGATGTTAAG
Found at i:75147719 original size:25 final size:25
Alignment explanation
Indices: 75147704--75147770 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
75147694 GTCCTAATCT
* *
75147704 AATTTCTAATTTAAAGTCCGAGTAG
1 AATTCCTAATTTAAAGTCCGAATAG
75147729 AATTCCTAATTTAAAGTCCGAATAG
1 AATTCCTAATTTAAAGTCCGAATAG
75147754 AATTCCTAATTTAAAGT
1 AATTCCTAATTTAAAGT
75147771 TTATAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (25 bp):
AATTCCTAATTTAAAGTCCGAATAG
Found at i:75149614 original size:17 final size:17
Alignment explanation
Indices: 75149594--75149630 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
75149584 TGATTTAGGA
75149594 TTTTTAGGGTTTAAGGT
1 TTTTTAGGGTTTAAGGT
75149611 TTTTTAGGGTTTAAGGT
1 TTTTTAGGGTTTAAGGT
75149628 TTT
1 TTT
75149631 AGATTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.00, G:0.27, T:0.57
Consensus pattern (17 bp):
TTTTTAGGGTTTAAGGT
Found at i:75149987 original size:125 final size:126
Alignment explanation
Indices: 75149758--75150020 Score: 447
Period size: 125 Copynumber: 2.1 Consensus size: 126
75149748 ATTCACTATT
*
75149758 AATTACGGAAAAAAGCTCCCACGTTGACGCTCTTTTGCTACAATAGTATCTGAAAAAATAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGTATCTGAAAAAATAATTTT
** *
75149823 GAGAAGATGTTTCTGAATAAATAGTGTCAAAAATGCTTCAAAAAGGATGCACTGTCAGCAA
66 GAGAAGATGTTTCTGAATAAATAGTGTCAAAAACACTTCAAAAAGGATGCACTGTCAGAAA
* *
75149884 AATTACGGAAAAAAGCTCCCACGTGGATGCTCTTTTGCTACAGTAGTATCT-AAAAAATAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGTATCTGAAAAAATAATTTT
*
75149948 GAGAAGATGTTTCTGAATAAATAGTGTCAAAAACACTTCAAGAAGGATGCACTGTCAGAAA
66 GAGAAGATGTTTCTGAATAAATAGTGTCAAAAACACTTCAAAAAGGATGCACTGTCAGAAA
*
75150009 AATTACAGAAAA
1 AATTACGGAAAA
75150021 TGTAACACCC
Statistics
Matches: 129, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
125 81 0.63
126 48 0.37
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (126 bp):
AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGTATCTGAAAAAATAATTTT
GAGAAGATGTTTCTGAATAAATAGTGTCAAAAACACTTCAAAAAGGATGCACTGTCAGAAA
Found at i:75151521 original size:29 final size:27
Alignment explanation
Indices: 75151503--75151572 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
75151493 ATATTAAGTC
75151503 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
75151530 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
75151558 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
75151573 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:75151566 original size:28 final size:28
Alignment explanation
Indices: 75151503--75151600 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
75151493 ATATTAAGTC
*
75151503 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
75151530 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75151558 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
75151587 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75151601 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75158195 original size:31 final size:31
Alignment explanation
Indices: 75158157--75158219 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
75158147 ATGCTATCTC
75158157 ATATCGATGCCATTGTCCCAGACAGGGTCTT
1 ATATCGATGCCATTGTCCCAGACAGGGTCTT
75158188 ATATCGATGCCATTGTCCCAGACAGGGTCTT
1 ATATCGATGCCATTGTCCCAGACAGGGTCTT
75158219 A
1 A
75158220 CACAAATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (31 bp):
ATATCGATGCCATTGTCCCAGACAGGGTCTT
Found at i:75158295 original size:44 final size:43
Alignment explanation
Indices: 75158187--75158306 Score: 118
Period size: 41 Copynumber: 2.8 Consensus size: 43
75158177 GACAGGGTCT
* * *
75158187 TATATCGATGCCATTGTCCCAGACAGGGTCTTACACAAATCAA
1 TATATCGATGCCAATGTCCCAGACATGGTCTTACACAAACCAA
* * ***
75158230 -ATA-CGATGTCGATGTCCCAGACATGGTCTTACTTTAACCACA
1 TATATCGATGCCAATGTCCCAGACATGGTCTTACACAAACCA-A
* * *
75158272 TATATCGATGCCAATGTCTCAGACGTGGTATTACA
1 TATATCGATGCCAATGTCCCAGACATGGTCTTACA
75158307 TGAAAACACA
Statistics
Matches: 60, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
41 29 0.48
42 4 0.07
43 3 0.05
44 24 0.40
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (43 bp):
TATATCGATGCCAATGTCCCAGACATGGTCTTACACAAACCAA
Found at i:75159764 original size:130 final size:128
Alignment explanation
Indices: 75159592--75159955 Score: 505
Period size: 130 Copynumber: 2.9 Consensus size: 128
75159582 TTATTTTAAC
* * *
75159592 AAAAATTATTGGCTAATTTAAAAGAACATTTATTGTATTAAAATTAAAAAAAGTAAAGTACAATT
1 AAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATT-AAAAAAG-AAAGTACAATT
* *
75159657 AAAATATAAAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAATAA
64 AAAATAT-TAAAAACAACTTTTATTTTATTAATTGAAACTATATAAAAAATAAATATAAAAATAA
75159722 T
128 T
*
75159723 -AAAAATATTGGCTAATTTAAAAGAATATTTATTTTAATAAAATT-----A-AAA-TA-AATTAA
1 AAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAGAAAGTACAATTAA
* * *
75159779 AATATTAAAAACAATTTTTATTTTATTAATTGAAACTGTATAAAAATTAAATATAAAAATAAT
66 AATATTAAAAACAACTTTTATTTTATTAATTGAAACTATATAAAAAATAAATATAAAAATAAT
*
75159842 AAAAAATATTGCCTAATTTAAAAGAACATTTATTTTAATAAAATTTAAAAAAGATAAGTACAATT
1 AAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAA-TTAAAAAAGA-AAGTACAATT
*
75159907 AAAATATTAAAAACAACTTTTATTTTATT-ATATGAAACTAAATAAAAAA
64 AAAATATTAAAAACAACTTTTATTTTATTAAT-TGAAACTATATAAAAAA
75159956 AGTTTCTACA
Statistics
Matches: 206, Mismatches: 15, Indels: 25
0.84 0.06 0.10
Matches are distributed among these distances:
119 53 0.26
120 51 0.25
121 4 0.02
122 3 0.01
124 1 0.00
126 1 0.00
127 1 0.00
128 2 0.01
129 4 0.02
130 86 0.42
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.35
Consensus pattern (128 bp):
AAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAGAAAGTACAATTAA
AATATTAAAAACAACTTTTATTTTATTAATTGAAACTATATAAAAAATAAATATAAAAATAAT
Found at i:75159801 original size:119 final size:121
Alignment explanation
Indices: 75159635--75159955 Score: 423
Period size: 119 Copynumber: 2.6 Consensus size: 121
75159625 TGTATTAAAA
* * * * *
75159635 TTAAAAAAAGTAAAGTACAATTAAAATATAAAAAAACAACTTTTATTTTATTAATTAAAACTATA
1 TTAATAAAATTAAAATACAATTAAAATAT-TAAAAACAACTTTTATTTTATTAATTGAAACTATA
* *
75159700 TAAAAAATAAATATAAAAATAAT-AAAAATATTGGCTAATTTAAAAGAATATTTATT
65 TAAAAAATAAATATAAAAATAATAAAAAATATTGCCTAATTTAAAAGAACATTTATT
* *
75159756 TTAATAAAATTAAAATA-AATTAAAATATTAAAAACAATTTTTATTTTATTAATTGAAACTGTAT
1 TTAATAAAATTAAAATACAATTAAAATATTAAAAACAACTTTTATTTTATTAATTGAAACTATAT
*
75159820 AAAAATTAAATATAAAAATAATAAAAAATATTGCCTAATTTAAAAGAACATTTATT
66 AAAAAATAAATATAAAAATAATAAAAAATATTGCCTAATTTAAAAGAACATTTATT
75159876 TTAATAAAATTTAAAAAAGATAAGTACAATTAAAATATTAAAAACAACTTTTATTTTATT-ATAT
1 TTAATAAAA-TT-----A-A-AA-TACAATTAAAATATTAAAAACAACTTTTATTTTATTAAT-T
*
75159940 GAAACTAAATAAAAAA
56 GAAACTATATAAAAAA
75159956 AGTTTCTACA
Statistics
Matches: 174, Mismatches: 14, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
119 53 0.30
120 51 0.29
121 16 0.09
126 1 0.01
127 1 0.01
128 2 0.01
129 4 0.02
130 46 0.26
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (121 bp):
TTAATAAAATTAAAATACAATTAAAATATTAAAAACAACTTTTATTTTATTAATTGAAACTATAT
AAAAAATAAATATAAAAATAATAAAAAATATTGCCTAATTTAAAAGAACATTTATT
Found at i:75162241 original size:9 final size:10
Alignment explanation
Indices: 75162214--75162264 Score: 66
Period size: 11 Copynumber: 4.7 Consensus size: 10
75162204 TTAACAAAAA
75162214 TTGAGAGAAAT
1 TTGAGAG-AAT
75162225 TTGAGAGAAT
1 TTGAGAGAAT
75162235 TTGGAGAGAAT
1 TT-GAGAGAAT
75162246 TTAGAGAGAAT
1 TT-GAGAGAAT
75162257 TGTGAGAG
1 T-TGAGAG
75162265 GATTATTGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
10 5 0.14
11 31 0.84
12 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.27
Consensus pattern (10 bp):
TTGAGAGAAT
Found at i:75170195 original size:28 final size:27
Alignment explanation
Indices: 75170145--75170197 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
75170135 TAAAATAATT
75170145 TTAAAATTATAAAAATAAAAGAAAATA
1 TTAAAATTATAAAAATAAAAGAAAATA
* * *
75170172 TTAAATTTAGTAAAAATTATAGAAAA
1 TTAAAATTA-TAAAAATAAAAGAAAA
75170198 AAATAAGGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (27 bp):
TTAAAATTATAAAAATAAAAGAAAATA
Found at i:75191173 original size:20 final size:20
Alignment explanation
Indices: 75191150--75191199 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
75191140 AAATCCAAAT
*
75191150 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAAGA
* *
75191170 TAAAATCCTGAAATTCAAGA
1 TAAAATACTAAAATTCAAGA
75191190 TAAGAATACT
1 TAA-AATACT
75191200 GATGTGGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAATTCAAGA
Found at i:75194342 original size:15 final size:16
Alignment explanation
Indices: 75194315--75194344 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75194305 GGATGGCGTT
75194315 TGTTTGATTTTTATTG
1 TGTTTGATTTTTATTG
75194331 TGTTTG-TTTTTATT
1 TGTTTGATTTTTATT
75194345 TCATAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.10, C:0.00, G:0.17, T:0.73
Consensus pattern (16 bp):
TGTTTGATTTTTATTG
Found at i:75205333 original size:26 final size:25
Alignment explanation
Indices: 75205287--75205335 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
75205277 TCTCATCTCA
* *
75205287 ATTTTACTCTAGTAAAATTTTGACG
1 ATTTTACCCTAGGAAAATTTTGACG
*
75205312 ATTTTACCCCTAGGAAATTTTTGA
1 ATTTTA-CCCTAGGAAAATTTTGA
75205336 GAAAGTTCGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 6 0.30
26 14 0.70
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (25 bp):
ATTTTACCCTAGGAAAATTTTGACG
Found at i:75207803 original size:81 final size:81
Alignment explanation
Indices: 75207668--75207829 Score: 272
Period size: 81 Copynumber: 2.0 Consensus size: 81
75207658 GACTTTAGTA
*
75207668 AGGGTGGTTGGGACTCTGTTTTAGCTTGGACTTATGAGTTATCTATAATCATTGCGC-TAATTTA
1 AGGGTGGTTAGGACTCTGTTTTAGCTTGGACTTATGAGTTATCTATAATCATTGC-CTTAATTTA
75207732 ATGACTTGTTTAAGTGT
65 ATGACTTGTTTAAGTGT
* * *
75207749 AGGGTGGTTAGGACTCTGTTTTAGCTTGGACTTATGAGTTGTTTGTAATCATTGCCTTAATTTAA
1 AGGGTGGTTAGGACTCTGTTTTAGCTTGGACTTATGAGTTATCTATAATCATTGCCTTAATTTAA
75207814 TGACTTGTTTAAGTGT
66 TGACTTGTTTAAGTGT
75207830 TAAGTGATGT
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
80 1 0.01
81 75 0.99
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (81 bp):
AGGGTGGTTAGGACTCTGTTTTAGCTTGGACTTATGAGTTATCTATAATCATTGCCTTAATTTAA
TGACTTGTTTAAGTGT
Found at i:75210130 original size:23 final size:22
Alignment explanation
Indices: 75210081--75210144 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
75210071 CCTAATCAGT
*
75210081 ATACGACACATAAAGTGCCTAA
1 ATACGACACACAAAGTGCCTAA
* *
75210103 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCT-AA
*
75210125 ATACGACACATAAAGTGCCT
1 ATACGACACACAAAGTGCCT
75210145 GATCAGTAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 15 0.44
22 4 0.12
23 15 0.44
ACGTcount: A:0.41, C:0.25, G:0.19, T:0.16
Consensus pattern (22 bp):
ATACGACACACAAAGTGCCTAA
Found at i:75210145 original size:23 final size:23
Alignment explanation
Indices: 75210081--75210146 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
75210071 CCTAATCAGT
75210081 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
75210103 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
75210125 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
75210147 TCAGTAAAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:75217327 original size:18 final size:17
Alignment explanation
Indices: 75217297--75217339 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
75217287 TTTTCAATTT
*
75217297 TCTTTTTCTTCTC-ATAC
1 TCTTTTTCCTCTCGAT-C
75217314 TCTTTTTCGCTCTCGATC
1 TCTTTTTC-CTCTCGATC
75217332 TCTTTTTC
1 TCTTTTTC
75217340 TTTACAAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 8 0.35
18 13 0.57
19 2 0.09
ACGTcount: A:0.07, C:0.30, G:0.05, T:0.58
Consensus pattern (17 bp):
TCTTTTTCCTCTCGATC
Found at i:75223499 original size:31 final size:31
Alignment explanation
Indices: 75223464--75223642 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
75223454 CTTGTCACTT
* *
75223464 GTAGCCGAAGCTTCCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
75223495 GTAGCCGAAGCTA-CATTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
75223525 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
75223556 GTAGCTGAAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
75223587 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
75223618 GTAGTCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
75223643 TGTCATTTGT
Statistics
Matches: 135, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
30 27 0.20
31 108 0.80
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:75223726 original size:52 final size:51
Alignment explanation
Indices: 75223618--75223744 Score: 159
Period size: 52 Copynumber: 2.5 Consensus size: 51
75223608 CACTGATTAG
* * *
75223618 GTAGTCGAAGCTACCACTTT-TCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCA-TTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
*
75223669 GTAGCCGAAGCTATCATTTATCACTT-TCACTTGTTCTTGATCAGAGATAAGT
1 GTAGCCGAAGCTATCATTTATCACTTGTCACTTGTCCTTGATC--AGATAAGT
* *
75223721 GTAGCCAAAGCTATCACTTATCAC
1 GTAGCCGAAGCTATCATTTATCAC
75223745 ATGTTGCCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
50 17 0.25
51 20 0.30
52 30 0.45
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCATTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:75259181 original size:55 final size:55
Alignment explanation
Indices: 75259062--75259202 Score: 149
Period size: 55 Copynumber: 2.6 Consensus size: 55
75259052 CGATATGGTT
* ** *
75259062 GTGGTCGAGCCTGCCAAAACAACACGGGCGTGCCACACGCCCATGTGGACGAACA
1 GTGGTCGAACCTGTTAAAACAACACGGGCGTACCACACGCCCATGTGGACGAACA
* * * * * * *
75259117 ATGGGCGAACCTGTTAAAACAGCACGGGCGTACGACACGCCCGTGTGGAAC-ACCC
1 GTGGTCGAACCTGTTAAAACAACACGGGCGTACCACACGCCCATGTGG-ACGAACA
**
75259172 GTGGTCGAACCTGTTAAATTAACACGGGCGT
1 GTGGTCGAACCTGTTAAAACAACACGGGCGT
75259203 GGGAGAAGCG
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
55 67 0.97
56 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.29, T:0.15
Consensus pattern (55 bp):
GTGGTCGAACCTGTTAAAACAACACGGGCGTACCACACGCCCATGTGGACGAACA
Found at i:75264701 original size:942 final size:939
Alignment explanation
Indices: 75262831--75264713 Score: 3334
Period size: 942 Copynumber: 2.0 Consensus size: 939
75262821 TTATTTTGAT
75262831 TATGAGTTGAGATTTTGCTTGAGGACAAACAAATGCTTAAGTGTGGGGTATTTGATAAACCGTAA
1 TATGAGTTGAGATTTTGCTTGAGGACAAACAAATGCTTAAGTGTGGGGTATTTGATAAACCGTAA
* *
75262896 TTTATACATATTTTTACCCCATGTTTAACGCATTTTATGGATGATTTTCCATTAGAATTGGTGAA
66 TTTATACATATTTTTACCCCATGTCTAACGCATTTTATGGATAATTTTCCATTAGAATTGGTGAA
*
75262961 TTCGATGCTCCTAATGCTTTAATTTCATGTTTTATACTTAGAAGAGCGTAGGAGAGCGAAGGAAC
131 TTCGATGCTCCTAATGCTTTAATTTCATGTTTTATACTTAGAAGAGCATAGGAGAGCGAAGGAAC
*
75263026 GAGAAACGGGCCAAAAATAGAGAAAATGGGCCAAAGTACAAACTTCACACGGCCTGGACTTCCTC
196 GAGAAACGGGCCAAAAATAGAGAAAATGGGCCAAAGTACAAACTTCACACAGCCTGGACTTCCTC
* * * *
75263091 ATACAGGCAAACCACACGGCCGTGTCAATCTGGCAGAATCGAAGCACAACTCACACAGCTATAGC
261 ACACAGGCAAACCACACAGCCGTGTCAATCTAGCAGAATCAAAGCACAACTCACACAGCTATAGC
75263156 ACAAGCCCGTGCCATTCTAACAGGCTCGAGCACGGCCTGAATTAATCAAACACGAGCGTGCGCCA
326 ACAAGCCCGTGCCATTCTAACAGGCTCGAGCACGGCCTGAATTAATCAAACACGAGCGTGCGCCA
* *
75263221 CAGGCGTGTCCCTACCGAGCCCAAGTTAAGTCCAATTCCGAAAGGGCCACTTTTGAGGGCTCATA
391 CAGGCGTGTCCCTACCAAGCCCAAGTTAAGTCCAATTCCGAAAAGGCCACTTTTGAGGGCTCATA
* *
75263286 GGCATTCCAAAGCCTATAAATACACCCTAAAAGAGGAGAAAATAGGGCAAACAGAATAGGGAGTA
456 GGCATTCCAAAGCCTATAAATACACCCTAAAAGAAGAGAAAAGAGGGCAAACAGAATAGGGAGTA
75263351 AGGAATTACTCCAAGAAAGCCGATTGTTTCATCTCAGAAGCCGGATTCATCATCAAGACTGAAGA
521 AGGAATTACTCCAAGAAAGCCGATTGTTTCATCTCAGAAGCCGGATTCATCATCAAGACTGAAGA
75263416 TCTCTCCTCAATTCCCCTTCAGGAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTATTTTTCTG
586 TCTCTCCTCAATTCCCCTTCAGGAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTATTTTTCTG
* *
75263481 AGATGTTTTCTTATTTAGTTATGAGCTAAATCCCCTAAATACCTAAGGGGAATGAAACCTAAGAC
651 AGATGTTTTCTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAAGGGAATGAAACCTAAGAC
*
75263546 AAATCTTGTTATTATTTTCTGAATCATTTGATAAATATTTAACTTGTTCTTAATTATGTGTTCTT
716 AAATCTTGTTATTATTTTCTGAATCATATGATAAATATTTAACTTGTTCTTAATTATGTGTTCTT
* *
75263611 AATTCTTGTTTTGATATCCTAGGATACTGATTCAAGATAAGGTCTTATTTAGAGGAGGAATAGAC
781 AATTCTTGTTTTGATATCCCAGGATACTGATTCAAGATAAGGTCTTATTCAGAGGAGGAATAGAC
* *
75263676 CCTGGCTAAGAGTACATTTATCATAATTAAGCGGAGTTGATTGCATGCCTAGACATAGGGTGACA
846 CCTAGCTAAGAGTACATTTATCATAATTAAGCGGAGTTGATTGCACGCCTAGACATAGGGTGACA
* * *
75263741 AGATTTTGCCAGATTAGGGTGAAATCTAA
911 AGATTTTGCCAAATTAGGGTAAAACCTAA
*
75263770 TATGAGTTGAGGATTTTGCTTGAGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGT
1 TATGAGTTGA-GATTTTGCTTGAGGACAAACAAATGCTTAAGTGT-GGGGTATTTGATAAACCGT
75263835 AATTTATACATATTTTTACCCCATGTCTAACGCATTTTATGGATAATTTTCCATTAGAATTGGTG
64 AATTTATACATATTTTTACCCCATGTCTAACGCATTTTATGGATAATTTTCCATTAGAATTGGTG
75263900 AATTCGATGCTCCTAATGCTTTAATTTCATGTTTTATACTTAGAAGAGCATAGGAGAGCGAAAGG
129 AATTCGATGCTCCTAATGCTTTAATTTCATGTTTTATACTTAGAAGAGCATAGGAGAGCG-AAGG
* * *
75263965 AACGAGAAACGGGCCAAAAATAGAGAACATTGGCCAAAGTACGAACTTCACACAGCCTGGACTTC
193 AACGAGAAACGGGCCAAAAATAGAGAAAATGGGCCAAAGTACAAACTTCACACAGCCTGGACTTC
* * * *
75264030 CTCACACGGGTAAACCACACAGCCGTGTCAATCTAGCAGAATCAAAGCACGACTCACACGGCTAT
258 CTCACACAGGCAAACCACACAGCCGTGTCAATCTAGCAGAATCAAAGCACAACTCACACAGCTAT
* * * *
75264095 AGTACAAGCCCGTGCCATTCTAACAGGCTCGAGCACGGCCTGAATTAATCAAACACGGGCTTGTG
323 AGCACAAGCCCGTGCCATTCTAACAGGCTCGAGCACGGCCTGAATTAATCAAACACGAGCGTGCG
* *
75264160 CCACAGGCGTGTCCCTGCCAAGCCCAAGTTAAGTCCAATTCTGAAAAGGCCACTTTTGAGGGCTC
388 CCACAGGCGTGTCCCTACCAAGCCCAAGTTAAGTCCAATTCCGAAAAGGCCACTTTTGAGGGCTC
* *
75264225 ATAGGCATTCCAAAGCCTATAAATACACCCTAAAAGAAGAGAAAAGGGGGCACACAGAATAGGGA
453 ATAGGCATTCCAAAGCCTATAAATACACCCTAAAAGAAGAGAAAAGAGGGCAAACAGAATAGGGA
* *
75264290 GTAAGGAATTACTCCAAGGAAGCCGATTGTTTCATCTTAGAAGCCGGATTCATCATCAAGACTGA
518 GTAAGGAATTACTCCAAGAAAGCCGATTGTTTCATCTCAGAAGCCGGATTCATCATCAAGACTGA
75264355 AGATCTCTCCTCAATTCCCCTTCAGGAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTATTTTT
583 AGATCTCTCCTCAATTCCCCTTCAGGAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTATTTTT
75264420 CTGAGATGTTTTCTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAAGGGAATGAAACCTAA
648 CTGAGATGTTTTCTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAAGGGAATGAAACCTAA
* *
75264485 GACGAATCTTGTTATTATTTTCTGAATCGTATGATAAATATTTAACTTGTTCTTAATTATGTGTT
713 GACAAATCTTGTTATTATTTTCTGAATCATATGATAAATATTTAACTTGTTCTTAATTATGTGTT
*
75264550 CTTAATTCTTGTTTTGATATCCCAGGATACTGATTCAAGATAAGGTCTTATTCAGATGAGGAATA
778 CTTAATTCTTGTTTTGATATCCCAGGATACTGATTCAAGATAAGGTCTTATTCAGAGGAGGAATA
* *
75264615 GACCCTAGCTAAGAGTACATTTATCATAATTAAGTGGAGTTGATTGCACGCTTAGACATAGGGTG
843 GACCCTAGCTAAGAGTACATTTATCATAATTAAGCGGAGTTGATTGCACGCCTAGACATAGGGTG
75264680 ACAAGATTTTGCCAAATTAGGGTAAAACCTAA
908 ACAAGATTTTGCCAAATTAGGGTAAAACCTAA
75264712 TA
1 TA
75264714 AGGGGATCCA
Statistics
Matches: 896, Mismatches: 45, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
939 10 0.01
940 33 0.04
941 141 0.16
942 712 0.79
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (939 bp):
TATGAGTTGAGATTTTGCTTGAGGACAAACAAATGCTTAAGTGTGGGGTATTTGATAAACCGTAA
TTTATACATATTTTTACCCCATGTCTAACGCATTTTATGGATAATTTTCCATTAGAATTGGTGAA
TTCGATGCTCCTAATGCTTTAATTTCATGTTTTATACTTAGAAGAGCATAGGAGAGCGAAGGAAC
GAGAAACGGGCCAAAAATAGAGAAAATGGGCCAAAGTACAAACTTCACACAGCCTGGACTTCCTC
ACACAGGCAAACCACACAGCCGTGTCAATCTAGCAGAATCAAAGCACAACTCACACAGCTATAGC
ACAAGCCCGTGCCATTCTAACAGGCTCGAGCACGGCCTGAATTAATCAAACACGAGCGTGCGCCA
CAGGCGTGTCCCTACCAAGCCCAAGTTAAGTCCAATTCCGAAAAGGCCACTTTTGAGGGCTCATA
GGCATTCCAAAGCCTATAAATACACCCTAAAAGAAGAGAAAAGAGGGCAAACAGAATAGGGAGTA
AGGAATTACTCCAAGAAAGCCGATTGTTTCATCTCAGAAGCCGGATTCATCATCAAGACTGAAGA
TCTCTCCTCAATTCCCCTTCAGGAGTTTTGGGTTTTCTTTATGTTTTGTATTCTTTATTTTTCTG
AGATGTTTTCTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAAGGGAATGAAACCTAAGAC
AAATCTTGTTATTATTTTCTGAATCATATGATAAATATTTAACTTGTTCTTAATTATGTGTTCTT
AATTCTTGTTTTGATATCCCAGGATACTGATTCAAGATAAGGTCTTATTCAGAGGAGGAATAGAC
CCTAGCTAAGAGTACATTTATCATAATTAAGCGGAGTTGATTGCACGCCTAGACATAGGGTGACA
AGATTTTGCCAAATTAGGGTAAAACCTAA
Found at i:75267764 original size:56 final size:56
Alignment explanation
Indices: 75267698--75267809 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
75267688 CTAAGCATGG
75267698 GATAAAAATATGTATAAATTACGGTTTATCAACCATTAACATGGTTAATGGACATT
1 GATAAAAATATGTATAAATTACGGTTTATCAACCATTAACATGGTTAATGGACATT
75267754 GATAAAAATATGTATAAATTACGGTTTATCAACCATTAACATGGTTAATGGACATT
1 GATAAAAATATGTATAAATTACGGTTTATCAACCATTAACATGGTTAATGGACATT
75267810 AATGACCTTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (56 bp):
GATAAAAATATGTATAAATTACGGTTTATCAACCATTAACATGGTTAATGGACATT
Found at i:75272203 original size:30 final size:30
Alignment explanation
Indices: 75272167--75272308 Score: 189
Period size: 30 Copynumber: 4.8 Consensus size: 30
75272157 GTGTGCTAAA
75272167 CGATGGTCAAAGCCATCCCTTTTGTTTAAT
1 CGATGGTCAAAGCCATCCCTTTTGTTTAAT
*
75272197 CGATGGTCAAAGCCATCCCTTTTTTTTAAT
1 CGATGGTCAAAGCCATCCCTTTTGTTTAAT
*
75272227 TGATGGTCAAAGCCATCCCTTTTGTTTAAT
1 CGATGGTCAAAGCCATCCCTTTTGTTTAAT
* ** *
75272257 TGATGGTCGAAA-CCATCCCTTTT-CATAGT
1 CGATGGTC-AAAGCCATCCCTTTTGTTTAAT
* *
75272286 CTATGGTCGAAGCCATCCCTTTT
1 CGATGGTCAAAGCCATCCCTTTT
75272309 CATATTTGAT
Statistics
Matches: 101, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
28 2 0.02
29 20 0.20
30 76 0.75
31 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (30 bp):
CGATGGTCAAAGCCATCCCTTTTGTTTAAT
Found at i:75272262 original size:60 final size:60
Alignment explanation
Indices: 75272168--75272465 Score: 223
Period size: 58 Copynumber: 5.1 Consensus size: 60
75272158 TGTGCTAAAC
* **
75272168 GATGGTCAAAGCCATCCCTTTTGTTTAATCGATGGTCAAAGCCATCCCTTTTTTTTAAT-T
1 GATGGTCAAAGCCATCCCTTTTGTTTAATTGATGGTCAAA-CCATCCCTTTTTCATAATCT
*
75272228 GATGGTCAAAGCCATCCCTTTTGTTTAATTGATGGTCGAAACCATCCC-TTTTCATAGTCT
1 GATGGTCAAAGCCATCCCTTTTGTTTAATTGATGGTC-AAACCATCCCTTTTTCATAATCT
* ** * *
75272288 -ATGGTCGAAGCCATCCCTTTT-CATATTTGATGGTCAAAACTATCCC-TTTTCAT-ATGCT
1 GATGGTCAAAGCCATCCCTTTTGTTTAATTGATGGTC-AAACCATCCCTTTTTCATAAT-CT
* ** *
75272346 -ATGGTCATCA-CCATCCCTTTT-CAT-ATTCGATGGTCGAAACCATCCC-TTTTCATATTC-
1 GATGGTCA-AAGCCATCCCTTTTGTTTAATT-GATGGTC-AAACCATCCCTTTTTCATAATCT
** ** * * *
75272403 GATGGTCGTCA-CCATCCCTTTT-CATATTTGATGGTCATCACCATCCC-TTTTCATATTC-
1 GATGGTC-AAAGCCATCCCTTTTGTTTAATTGATGGTCA-AACCATCCCTTTTTCATAATCT
75272461 GATGG
1 GATGG
75272466 GCGTCGATAC
Statistics
Matches: 208, Mismatches: 20, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
57 4 0.02
58 126 0.61
59 31 0.15
60 44 0.21
61 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.38
Consensus pattern (60 bp):
GATGGTCAAAGCCATCCCTTTTGTTTAATTGATGGTCAAACCATCCCTTTTTCATAATCT
Found at i:75272301 original size:29 final size:28
Alignment explanation
Indices: 75272169--75272458 Score: 198
Period size: 29 Copynumber: 9.9 Consensus size: 28
75272159 GTGCTAAACG
** *
75272169 ATGGTCAAAGCCATCCCTTTTGTTTAATCG
1 ATGGTCAAAGCCATCCCTTTT-CAT-ATCT
**
75272199 ATGGTCAAAGCCATCCCTTTTTTTTAAT-T
1 ATGGTCAAAGCCATCCC-TTTTCAT-ATCT
**
75272228 GATGGTCAAAGCCATCCCTTTTGTTTAAT-T
1 -ATGGTCAAAGCCATCCCTTTT-CAT-ATCT
75272258 GATGGTCGAAA-CCATCCCTTTTCATAGTCT
1 -ATGGTC-AAAGCCATCCCTTTTCATA-TCT
* *
75272288 ATGGTCGAAGCCATCCCTTTTCATATTT
1 ATGGTCAAAGCCATCCCTTTTCATATCT
* *
75272316 GATGGTCAAAACTATCCCTTTTCATATGCT
1 -ATGGTCAAAGCCATCCCTTTTCATAT-CT
* *
75272346 ATGGTCATCA-CCATCCCTTTTCATATTCG
1 ATGGTCA-AAGCCATCCCTTTTCATA-TCT
*
75272375 ATGGTCGAAA-CCATCCCTTTTCATATTCG
1 ATGGTC-AAAGCCATCCCTTTTCATA-TCT
** *
75272404 ATGGTCGTCA-CCATCCCTTTTCATATTT
1 ATGGTC-AAAGCCATCCCTTTTCATATCT
*
75272432 GATGGTCATCA-CCATCCCTTTTCATAT
1 -ATGGTCA-AAGCCATCCCTTTTCATAT
75272459 TCGATGGGCG
Statistics
Matches: 228, Mismatches: 18, Indels: 29
0.83 0.07 0.11
Matches are distributed among these distances:
28 6 0.03
29 145 0.64
30 70 0.31
31 7 0.03
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (28 bp):
ATGGTCAAAGCCATCCCTTTTCATATCT
Found at i:75272339 original size:58 final size:56
Alignment explanation
Indices: 75272198--75272458 Score: 265
Period size: 58 Copynumber: 4.5 Consensus size: 56
75272188 TTGTTTAATC
* ** * ** *
75272198 GATGGTCAAAGCCATCCCTTTTTTTTAAT-TGATGGTCAAAGCCATCCCTTTTGTTTAATT
1 GATGGTCAAAACCATCCC-TTTTCAT-ATCT-ATGGTCGAA-CCATCCCTTTT-CATATTT
*
75272258 GATGGTCGAAACCATCCCTTTTCATAGTCTATGGTCGAAGCCATCCCTTTTCATATTT
1 GATGGTCAAAACCATCCCTTTTCATA-TCTATGGTCGAA-CCATCCCTTTTCATATTT
* *
75272316 GATGGTCAAAACTATCCCTTTTCATATGCTATGGTC-ATCACCATCCCTTTTCATATTC
1 GATGGTCAAAACCATCCCTTTTCATAT-CTATGGTCGA--ACCATCCCTTTTCATATTT
* * *
75272374 GATGGTCGAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATTT
1 GATGGTCAAAACCATCCCTTTTCATA-TCTATGGTCG-AACCATCCCTTTTCATATTT
**
75272432 GATGGTCATCACCATCCCTTTTCATAT
1 GATGGTCAAAACCATCCCTTTTCATAT
75272459 TCGATGGGCG
Statistics
Matches: 174, Mismatches: 19, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
57 3 0.02
58 126 0.72
59 28 0.16
60 17 0.10
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (56 bp):
GATGGTCAAAACCATCCCTTTTCATATCTATGGTCGAACCATCCCTTTTCATATTT
Found at i:75272369 original size:87 final size:87
Alignment explanation
Indices: 75272196--75272465 Score: 298
Period size: 87 Copynumber: 3.1 Consensus size: 87
75272186 TTTTGTTTAA
** * **
75272196 TCGATGGTC-AAAGCCATCCCTTTTTTTTAATT-GATGGTCAAAGCCATCCCTTTTGTTTAAT-T
1 TCGATGGTCGAAA-CCATCCC-TTTTCAT-ATTCGATGGTCAAAACCATCCCTTTT-CAT-ATCT
*
75272258 GATGGTCGA-AACCATCCCTTTTCATAG
61 GATGGTC-ATCACCATCCCTTTTCATAG
* * * *
75272285 TCTATGGTCGAAGCCATCCCTTTTCATATTTGATGGTCAAAACTATCCCTTTTCATATGCT-ATG
1 TCGATGGTCGAAACCATCCCTTTTCATATTCGATGGTCAAAACCATCCCTTTTCATAT-CTGATG
*
75272349 GTCATCACCATCCCTTTTCATAT
65 GTCATCACCATCCCTTTTCATAG
*** *
75272372 TCGATGGTCGAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATTTGATGG
1 TCGATGGTCGAAACCATCCCTTTTCATATTCGATGGTCAAAACCATCCCTTTTCATATCTGATGG
*
75272437 TCATCACCATCCCTTTTCATAT
66 TCATCACCATCCCTTTTCATAG
75272459 TCGATGG
1 TCGATGG
75272466 GCGTCGATAC
Statistics
Matches: 157, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
86 4 0.03
87 110 0.70
88 26 0.17
89 15 0.10
90 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (87 bp):
TCGATGGTCGAAACCATCCCTTTTCATATTCGATGGTCAAAACCATCCCTTTTCATATCTGATGG
TCATCACCATCCCTTTTCATAG
Found at i:75272459 original size:29 final size:29
Alignment explanation
Indices: 75272268--75272465 Score: 226
Period size: 29 Copynumber: 6.8 Consensus size: 29
75272258 GATGGTCGAA
*
75272268 ACCATCCCTTTTCATAGTCT-ATGGTCGA--
1 ACCATCCCTTTTCATA-TTTGATGGTC-ATC
**
75272296 AGCCATCCCTTTTCATATTTGATGGTCAAA
1 A-CCATCCCTTTTCATATTTGATGGTCATC
* *
75272326 ACTATCCCTTTTCATATGCT-ATGGTCATC
1 ACCATCCCTTTTCATAT-TTGATGGTCATC
* *
75272355 ACCATCCCTTTTCATATTCGATGGTCGA-A
1 ACCATCCCTTTTCATATTTGATGGTC-ATC
* *
75272384 ACCATCCCTTTTCATATTCGATGGTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCATC
75272413 ACCATCCCTTTTCATATTTGATGGTCATC
1 ACCATCCCTTTTCATATTTGATGGTCATC
*
75272442 ACCATCCCTTTTCATATTCGATGG
1 ACCATCCCTTTTCATATTTGATGG
75272466 GCGTCGATAC
Statistics
Matches: 148, Mismatches: 14, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
28 4 0.03
29 141 0.95
30 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.38
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTTGATGGTCATC
Found at i:75272459 original size:58 final size:57
Alignment explanation
Indices: 75272256--75272470 Score: 288
Period size: 58 Copynumber: 3.7 Consensus size: 57
75272246 TTTTGTTTAA
* * *
75272256 TTGATGGTCGAAACCATCCCTTTTCATAGTCTATGGTCG-AAGCCATCCCTTTTCATAT
1 TTGATGGTC-AAACCATCCCTTTTCATATTCGATGGTCGTCA-CCATCCCTTTTCATAT
* * * *
75272314 TTGATGGTCAAAACTATCCCTTTTCATATGCTATGGTCATCACCATCCCTTTTCATAT
1 TTGATGGTC-AAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAT
*
75272372 TCGATGGTCGAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAT
1 TTGATGGTC-AAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAT
* *
75272430 TTGATGGTCATCACCATCCCTTTTCATATTCGATGGGCGTC
1 TTGATGGTCA-AACCATCCCTTTTCATATTCGATGGTCGTC
75272471 GATACTTTGT
Statistics
Matches: 140, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
57 1 0.01
58 138 0.99
59 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.37
Consensus pattern (57 bp):
TTGATGGTCAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAT
Found at i:75277040 original size:20 final size:19
Alignment explanation
Indices: 75277004--75277082 Score: 70
Period size: 20 Copynumber: 4.1 Consensus size: 19
75276994 CAAAGTATAG
*
75277004 ATAGAGGCA-TGATAGTGCA
1 ATAGAGGCACCGA-AGTGCA
75277023 ATTAGAGGCACCGAAGTGCAA
1 A-TAGAGGCACCGAAGTGC-A
* * * *
75277044 ATAGAGACACTGACGTGTA
1 ATAGAGGCACCGAAGTGCA
*
75277063 ACAGAGGCACCGAAGTGCA
1 ATAGAGGCACCGAAGTGCA
75277082 A
1 A
75277083 ACCTATACTA
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
19 17 0.36
20 26 0.55
21 4 0.09
ACGTcount: A:0.38, C:0.18, G:0.29, T:0.15
Consensus pattern (19 bp):
ATAGAGGCACCGAAGTGCA
Found at i:75281602 original size:29 final size:29
Alignment explanation
Indices: 75281568--75281624 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
75281558 TCAGTCTTTC
75281568 TGATCATATCAACCCCGTGAATCTTATTT
1 TGATCATATCAACCCCGTGAATCTTATTT
75281597 TGATCATATCAACCCCGTGAATCTTATT
1 TGATCATATCAACCCCGTGAATCTTATT
75281625 CTTACTAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.37
Consensus pattern (29 bp):
TGATCATATCAACCCCGTGAATCTTATTT
Found at i:75286040 original size:43 final size:42
Alignment explanation
Indices: 75285885--75286044 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 42
75285875 TGGTATTAAT
* * *
75285885 CTGAATTATCGTGTAAGACCGTGTCTGGGACACAGGCATCGAT-
1 CTGAATTA-CATGTAAGACCATGTCTGGGACA-ACGCATCGATA
* * *
75285928 TTGAAATTTACATGTAAGACCATGTTTGGGACATCGACATC-ATA
1 CTG-AA-TTACATGTAAGACCATGTCTGGGACAACG-CATCGATA
* * *
75285972 TCTG-ATTTCGTATAAGACCATGTCTGGGACAGACGCATCGATA
1 -CTGAATTACATGTAAGACCATGTCTGGGACA-ACGCATCGATA
*
75286015 CTGAATTACATGTAAGACCACGTCTGGGAC
1 CTGAATTACATGTAAGACCATGTCTGGGAC
75286045 GTTGGCATTA
Statistics
Matches: 93, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
42 29 0.31
43 33 0.35
44 26 0.28
45 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (42 bp):
CTGAATTACATGTAAGACCATGTCTGGGACAACGCATCGATA
Found at i:75298983 original size:45 final size:45
Alignment explanation
Indices: 75298906--75298991 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
75298896 CCAGACATGG
*
75298906 TCTTACACTGGCTTTCATATAGCGAGGCCGATGCCATGTCCTAGA
1 TCTTACACTGGCTCTCATATAGCGAGGCCGATGCCATGTCCTAGA
* * *
75298951 TCTTACACTGGCTCTCATCTATCG-GTGTCGATGCCATGTCC
1 TCTTACACTGGCTCTCATATAGCGAG-GCCGATGCCATGTCC
75298992 CAAACAGGTC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.31
Consensus pattern (45 bp):
TCTTACACTGGCTCTCATATAGCGAGGCCGATGCCATGTCCTAGA
Found at i:75299185 original size:46 final size:45
Alignment explanation
Indices: 75299084--75299194 Score: 152
Period size: 46 Copynumber: 2.4 Consensus size: 45
75299074 ATGCACATCA
*
75299084 CAGACATGTCTTACACTAGCTCTCGTCTCAATGCGATGCATGTCC
1 CAGACATGTCTTACACTAGCTCTCATCTCAATGCGATGCATGTCC
* * **
75299129 CAAACATGTCTTACACTAGCTCTCATGT-TGTGGCTGATGCATGTCC
1 CAGACATGTCTTACACTAGCTCTCATCTCAAT-GC-GATGCATGTCC
75299175 CAGACATGTCTTACACTAGC
1 CAGACATGTCTTACACTAGC
75299195 ATACATATCA
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
44 1 0.02
45 27 0.47
46 30 0.52
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (45 bp):
CAGACATGTCTTACACTAGCTCTCATCTCAATGCGATGCATGTCC
Found at i:75301057 original size:24 final size:24
Alignment explanation
Indices: 75301022--75301067 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
75301012 CTTCATTTCA
*
75301022 AAACAATTTAAACAAA-AAATTAC
1 AAACAATATAAACAAATAAATTAC
75301045 AAACATATATAAACAAATAAATT
1 AAACA-ATATAAACAAATAAATT
75301068 TAAGATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 10 0.50
25 5 0.25
ACGTcount: A:0.65, C:0.11, G:0.00, T:0.24
Consensus pattern (24 bp):
AAACAATATAAACAAATAAATTAC
Found at i:75302195 original size:172 final size:172
Alignment explanation
Indices: 75301909--75302426 Score: 1036
Period size: 172 Copynumber: 3.0 Consensus size: 172
75301899 TGAAACAAGC
75301909 TAAAGAAGCTTAGTAAGCTCATAGTATAAACATCAAATTAACTTACCTTAATCAAAGTAAACACT
1 TAAAGAAGCTTAGTAAGCTCATAGTATAAACATCAAATTAACTTACCTTAATCAAAGTAAACACT
75301974 TAAAGAGATAATTTATAATTCCTGATCACCAAATACCAATTCACCATTCACATTAGTAATTGCTC
66 TAAAGAGATAATTTATAATTCCTGATCACCAAATACCAATTCACCATTCACATTAGTAATTGCTC
75302039 ACATATTCAAGCATATCAAAACAACTTCCATCTCAAAGAACT
131 ACATATTCAAGCATATCAAAACAACTTCCATCTCAAAGAACT
75302081 TAAAGAAGCTTAGTAAGCTCATAGTATAAACATCAAATTAACTTACCTTAATCAAAGTAAACACT
1 TAAAGAAGCTTAGTAAGCTCATAGTATAAACATCAAATTAACTTACCTTAATCAAAGTAAACACT
75302146 TAAAGAGATAATTTATAATTCCTGATCACCAAATACCAATTCACCATTCACATTAGTAATTGCTC
66 TAAAGAGATAATTTATAATTCCTGATCACCAAATACCAATTCACCATTCACATTAGTAATTGCTC
75302211 ACATATTCAAGCATATCAAAACAACTTCCATCTCAAAGAACT
131 ACATATTCAAGCATATCAAAACAACTTCCATCTCAAAGAACT
75302253 TAAAGAAGCTTAGTAAGCTCATAGTATAAACATCAAATTAACTTACCTTAATCAAAGTAAACACT
1 TAAAGAAGCTTAGTAAGCTCATAGTATAAACATCAAATTAACTTACCTTAATCAAAGTAAACACT
75302318 TAAAGAGATAATTTATAATTCCTGATCACCAAATACCAATTCACCATTCACATTAGTAATTGCTC
66 TAAAGAGATAATTTATAATTCCTGATCACCAAATACCAATTCACCATTCACATTAGTAATTGCTC
75302383 ACATATTCAAGCATATCAAAACAACTTCCATCTCAAAGAACT
131 ACATATTCAAGCATATCAAAACAACTTCCATCTCAAAGAACT
75302425 TA
1 TA
75302427 CTCATACCAT
Statistics
Matches: 346, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
172 346 1.00
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.29
Consensus pattern (172 bp):
TAAAGAAGCTTAGTAAGCTCATAGTATAAACATCAAATTAACTTACCTTAATCAAAGTAAACACT
TAAAGAGATAATTTATAATTCCTGATCACCAAATACCAATTCACCATTCACATTAGTAATTGCTC
ACATATTCAAGCATATCAAAACAACTTCCATCTCAAAGAACT
Found at i:75308616 original size:38 final size:38
Alignment explanation
Indices: 75308574--75308670 Score: 140
Period size: 38 Copynumber: 2.6 Consensus size: 38
75308564 ATAGAGGCTT
* * *
75308574 ACATCTCATGGCAAACCACTACCCTTAAAACTAGGGAC
1 ACATCCCATGACAAACCACTACCCTTAAAACTAGGAAC
* * *
75308612 ACATCCCATGACAAGCCACTACCTTTCAAACTAGGAAC
1 ACATCCCATGACAAACCACTACCCTTAAAACTAGGAAC
75308650 ACATCCCATGACAAACCACTA
1 ACATCCCATGACAAACCACTA
75308671 TGCTAGAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.38, C:0.34, G:0.10, T:0.18
Consensus pattern (38 bp):
ACATCCCATGACAAACCACTACCCTTAAAACTAGGAAC
Found at i:75308688 original size:38 final size:38
Alignment explanation
Indices: 75308574--75308688 Score: 99
Period size: 38 Copynumber: 3.0 Consensus size: 38
75308564 ATAGAGGCTT
* * * * *
75308574 ACATCTCATGGCAAACCACTACCCT-TAAAACTAGGGAC
1 ACATCCCATGACAAACCACTA-CCTAGAAAACTAAGAAC
* *** *
75308612 ACATCCCATGACAAGCCACTACCTTTCAAACTAGGAAC
1 ACATCCCATGACAAACCACTACCTAGAAAACTAAGAAC
*
75308650 ACATCCCATGACAAACCACTATGCTAGAAAAC-AAGAAC
1 ACATCCCATGACAAACCACTA-CCTAGAAAACTAAGAAC
75308688 A
1 A
75308689 ACTGATTAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
37 3 0.05
38 55 0.86
39 6 0.09
ACGTcount: A:0.41, C:0.31, G:0.11, T:0.17
Consensus pattern (38 bp):
ACATCCCATGACAAACCACTACCTAGAAAACTAAGAAC
Found at i:75321583 original size:23 final size:23
Alignment explanation
Indices: 75321553--75321598 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
75321543 AAATGACTTA
75321553 ATTTGTGATTGTGTTAGATTGAT
1 ATTTGTGATTGTGTTAGATTGAT
75321576 ATTTGTGATTGTGTTAGATTGAT
1 ATTTGTGATTGTGTTAGATTGAT
75321599 TGCGTTCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (23 bp):
ATTTGTGATTGTGTTAGATTGAT
Found at i:75325521 original size:22 final size:22
Alignment explanation
Indices: 75325493--75325534 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
75325483 CACATTTGTA
* *
75325493 TTTTTTATTTCATATTTTAAGC
1 TTTTTTAATTAATATTTTAAGC
75325515 TTTTTTAATTAATATTTTAA
1 TTTTTTAATTAATATTTTAA
75325535 ATTAATAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTTTAATTAATATTTTAAGC
Found at i:75326027 original size:49 final size:52
Alignment explanation
Indices: 75325973--75326075 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 52
75325963 TTAATTTTAT
*
75325973 AAATAAAAGAGTTATTAATTAAAAAGATGAATTA-AAATA-AAAAAA-TTGA
1 AAATAAAAGAGTTATTAATTAAAAACATGAATTAGAAATAGAAAAAACTTGA
* * * * *
75326022 AAATAATATATTTTTTAATTAAAAACATTAATTAGAAATAGAAAAAACTTGA
1 AAATAAAAGAGTTATTAATTAAAAACATGAATTAGAAATAGAAAAAACTTGA
75326074 AA
1 AA
75326076 CAATATGAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
49 28 0.62
50 5 0.11
51 6 0.13
52 6 0.13
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (52 bp):
AAATAAAAGAGTTATTAATTAAAAACATGAATTAGAAATAGAAAAAACTTGA
Found at i:75335887 original size:57 final size:59
Alignment explanation
Indices: 75335811--75335927 Score: 152
Period size: 57 Copynumber: 2.0 Consensus size: 59
75335801 AATAAAGAAC
* *
75335811 AGAATTTAAGAAGACTTTTAAAGTTGATTTCAAAATAT-AA-ATAAATATATAAA-ATA
1 AGAATTTAAGAAGACTTTTAAAGTTAAATTCAAAATATAAATATAAATATATAAATATA
* *
75335867 AGAATTTAAAGAGAGA-TTTTAAATTTAAATTGAAAATATAAATATAAATATATAAATATA
1 AGAATTT-AAGA-AGACTTTTAAAGTTAAATTCAAAATATAAATATAAATATATAAATATA
75335927 A
1 A
75335928 TAAAATAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
56 7 0.13
57 23 0.44
58 5 0.10
59 13 0.25
60 4 0.08
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.34
Consensus pattern (59 bp):
AGAATTTAAGAAGACTTTTAAAGTTAAATTCAAAATATAAATATAAATATATAAATATA
Found at i:75336822 original size:26 final size:26
Alignment explanation
Indices: 75336758--75336809 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
75336748 AATTAAAAGC
* *
75336758 TAAATAATTATAAATAGTAATATATGA
1 TAAA-AATCATAAATAGTAATAAATGA
*
75336785 TAAAAATGATAAATAGTAATAAATG
1 TAAAAATCATAAATAGTAATAAATG
75336810 TTTAATAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.33
Consensus pattern (26 bp):
TAAAAATCATAAATAGTAATAAATGA
Found at i:75348239 original size:79 final size:81
Alignment explanation
Indices: 75348136--75348320 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
75348126 GCTACTCGTT
* * * *
75348136 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
75348199 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
75348216 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
75348280 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
75348296 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75348321 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:75348320 original size:40 final size:40
Alignment explanation
Indices: 75348117--75348320 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
75348107 CGGAATTTAA
** * *
75348117 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
75348157 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75348197 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75348236 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
75348276 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75348316 CCGGA
1 CCGGA
75348321 CATCATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75352121 original size:21 final size:20
Alignment explanation
Indices: 75352079--75352123 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
75352069 TTTCCCCTTT
**
75352079 CTTTCTTTTTATTTTTTTTC
1 CTTTCTTTTTATTTTTACTC
*
75352099 CTTTCTTTCTTCTTTTTACTC
1 CTTTCTTT-TTATTTTTACTC
75352120 CTTT
1 CTTT
75352124 GGTTCATCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.73
Consensus pattern (20 bp):
CTTTCTTTTTATTTTTACTC
Found at i:75353450 original size:18 final size:18
Alignment explanation
Indices: 75353416--75353694 Score: 141
Period size: 18 Copynumber: 15.1 Consensus size: 18
75353406 TCATTAACTC
* *
75353416 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAGTTAT
*
75353433 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAGTTAT
* **
75353451 TCGGTAACAATCAAATAT
1 TCAGTAACAATCAGTTAT
* * *
75353469 TCAATAATAACCAGTTAT
1 TCAGTAACAATCAGTTAT
*
75353487 TCAGTATCGATCAATTGATCGATTAT
1 TCAGTA---A-CAA-TCA--G-TTAT
* * *
75353513 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
*
75353531 TCAGTAACAATTAAGTTAT
1 TCAGTAACAA-TCAGTTAT
*
75353550 TCAGTAACAGTCA-TTCAT
1 TCAGTAACAATCAGTT-AT
*
75353568 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAGTTAT
** *
75353586 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAGTTAT
* * * *
75353604 TCAGCAATATTTAGTTAT
1 TCAGTAACAATCAGTTAT
* *
75353622 TCAGTAACAGTCTA-ATAT
1 TCAGTAACAATC-AGTTAT
* * *
75353640 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
* * * *
75353658 CCGGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
*
75353676 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAGTTAT
75353694 T
1 T
75353695 TTATACCTTT
Statistics
Matches: 197, Mismatches: 51, Indels: 27
0.72 0.19 0.10
Matches are distributed among these distances:
17 7 0.04
18 153 0.78
19 18 0.09
21 3 0.02
22 4 0.02
23 2 0.01
25 1 0.01
26 9 0.05
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
TCAGTAACAATCAGTTAT
Found at i:75353672 original size:72 final size:72
Alignment explanation
Indices: 75353508--75353694 Score: 216
Period size: 72 Copynumber: 2.6 Consensus size: 72
75353498 CAATTGATCG
* * *
75353508 ATTATCCAGTAACAGTCAATTATTCAGTAACAATTAAGTTATTCAGTAACAGTCATTCATTCAGT
1 ATTATCCAGTAACAGTCAATTATTCAGTAA-TATTAAGTTATTCAGTAACAGTCAATCATCCAGT
*
75353573 GACAATCA
65 AACAATCA
* * * * *
75353581 GTTATTCAGTAA-TGATCAATTATTCAGCAATATTTAGTTATTCAGTAACAGTCTAAT-ATCCAG
1 ATTATCCAGTAACAG-TCAATTATTCAGTAATATTAAGTTATTCAGTAACAGTC-AATCATCCAG
*
75353644 TAACAGTCA
64 TAACAATCA
* * *
75353653 ATTATCCGGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 ATTATCCAGTAACAGTCAATTATTCAGTAATATTAAGTTATT
75353695 TTATACCTTT
Statistics
Matches: 94, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
72 67 0.71
73 27 0.29
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (72 bp):
ATTATCCAGTAACAGTCAATTATTCAGTAATATTAAGTTATTCAGTAACAGTCAATCATCCAGTA
ACAATCA
Found at i:75353993 original size:45 final size:45
Alignment explanation
Indices: 75353868--75354016 Score: 210
Period size: 45 Copynumber: 3.3 Consensus size: 45
75353858 AACAGTAACA
* * **
75353868 GTAATAGT-ACAGTAACAATATCCGACACACAAAGTACCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGTCGAATCG
75353912 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGTCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGTCGAATCG
* * *
75353957 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGTGGAATTG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGTCGAATCG
* *
75354002 GTAATAGTAGCAGTA
1 GTAACAGTAACAGTA
75354017 GCGGTAACAG
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
44 7 0.07
45 87 0.93
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCGACACACAAAGTGTCGAATCG
Found at i:75355575 original size:5 final size:5
Alignment explanation
Indices: 75355562--75355613 Score: 95
Period size: 5 Copynumber: 10.2 Consensus size: 5
75355552 TTCTTTAGTT
75355562 TATATA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
75355613 T
1 T
75355614 TAAAACATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 42 0.91
6 4 0.09
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:75359058 original size:18 final size:18
Alignment explanation
Indices: 75359035--75359069 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
75359025 TAAAAGAAAC
*
75359035 ATATAAGGGTTAGGATAT
1 ATATAAGGGCTAGGATAT
75359053 ATATAAGGGCTAGGATA
1 ATATAAGGGCTAGGATA
75359070 CGCACTTGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.29, T:0.29
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAT
Found at i:75369383 original size:12 final size:12
Alignment explanation
Indices: 75369346--75369383 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
75369336 TTCACTATCT
75369346 ATTATTATAATA
1 ATTATTATAATA
* *
75369358 AATAATATAATA
1 ATTATTATAATA
75369370 ATTATTATAATA
1 ATTATTATAATA
75369382 AT
1 AT
75369384 GAATTGGCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATTATTATAATA
Found at i:75369866 original size:20 final size:19
Alignment explanation
Indices: 75369830--75369869 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
75369820 TTAAATATAA
* *
75369830 TTAAAAAATATTTTAAAAC
1 TTAAAAAATAATATAAAAC
75369849 TTAAAAAACTAATATAAAAC
1 TTAAAAAA-TAATATAAAAC
75369869 T
1 T
75369870 CTATGTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAAAAAATAATATAAAAC
Found at i:75373416 original size:16 final size:15
Alignment explanation
Indices: 75373387--75373436 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
75373377 TATTTTTTTC
*
75373387 AAATCAAGTCGAGTG
1 AAATCAAATCGAGTG
* *
75373402 AAATGAAATTCGAGTC
1 AAATCAAA-TCGAGTG
*
75373418 TAATCAAATCGAGTG
1 AAATCAAATCGAGTG
75373433 AAAT
1 AAAT
75373437 TGTTCAAGTT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 15 0.56
16 12 0.44
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.24
Consensus pattern (15 bp):
AAATCAAATCGAGTG
Found at i:75373699 original size:19 final size:19
Alignment explanation
Indices: 75373675--75373773 Score: 67
Period size: 19 Copynumber: 4.9 Consensus size: 19
75373665 TTATTTATAT
75373675 ATTATTTAGAATTTTTTAA
1 ATTATTTAGAATTTTTTAA
*
75373694 ATTA-TTATAATTTTTTAAAA
1 ATTATTTAGAATTTTTT--AA
*
75373714 ATATAAATTTTTGAATTTTTATAA
1 AT-T--A-TTTAGAATTTTT-TAA
* **
75373738 A-TATTTTGAATTTTAAAA
1 ATTATTTAGAATTTTTTAA
75373756 ATTATTTAGAACTTTTTT
1 ATTATTTAGAA-TTTTTT
75373774 TTTTGTAATT
Statistics
Matches: 62, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
18 14 0.23
19 23 0.37
20 9 0.15
21 1 0.02
22 1 0.02
23 1 0.02
24 3 0.05
25 9 0.15
26 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (19 bp):
ATTATTTAGAATTTTTTAA
Found at i:75373722 original size:17 final size:18
Alignment explanation
Indices: 75373684--75373725 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
75373674 TATTATTTAG
*
75373684 AATTTTTTAAATTATTAT
1 AATTTTTTAAAATATTAT
75373702 AATTTTTTAAAA-A-TAT
1 AATTTTTTAAAATATTAT
75373718 AAATTTTT
1 -AATTTTT
75373726 GAATTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 8 0.36
18 11 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AATTTTTTAAAATATTAT
Found at i:75383664 original size:18 final size:17
Alignment explanation
Indices: 75383641--75383683 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
75383631 GCAAACGGGA
75383641 TGGTTTATGGAAAACTGC
1 TGGTTTATGG-AAACTGC
*
75383659 TGGTTT-TGGGAACTGC
1 TGGTTTATGGAAACTGC
*
75383675 TGGATTATG
1 TGGTTTATG
75383684 AGAGTGCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 11 0.50
17 5 0.23
18 6 0.27
ACGTcount: A:0.21, C:0.09, G:0.33, T:0.37
Consensus pattern (17 bp):
TGGTTTATGGAAACTGC
Found at i:75384011 original size:21 final size:21
Alignment explanation
Indices: 75383970--75384013 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
75383960 TTTGAAAGAA
* *
75383970 TATTGTTTTAGAAAATTATTT
1 TATTATTTTAGAAAATAATTT
75383991 TATTATTTTA-AAAATAAATTT
1 TATTATTTTAGAAAAT-AATTT
75384012 TA
1 TA
75384014 CTTCTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (21 bp):
TATTATTTTAGAAAATAATTT
Found at i:75394252 original size:19 final size:20
Alignment explanation
Indices: 75394215--75394257 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
75394205 TATAATTCCA
*
75394215 AAAATATGAAAAAGTAAAT-
1 AAAATATGAAAAAGAAAATG
75394234 AAAATAT-AAAAATGAAAATG
1 AAAATATGAAAAA-GAAAATG
75394254 AAAA
1 AAAA
75394258 CAATGATCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 12 0.57
20 4 0.19
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (20 bp):
AAAATATGAAAAAGAAAATG
Found at i:75399477 original size:2 final size:2
Alignment explanation
Indices: 75399470--75399505 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
75399460 AGAATATACT
75399470 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
75399506 AAAGGCTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:75400014 original size:20 final size:20
Alignment explanation
Indices: 75399991--75400035 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
75399981 AATTTGATTG
75399991 TTTGAAACACTATTTGAAAT
1 TTTGAAACACTATTTGAAAT
* *
75400011 TTTGAAACCCTGTTTGAAAT
1 TTTGAAACACTATTTGAAAT
75400031 TTTGA
1 TTTGA
75400036 TTTAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.42
Consensus pattern (20 bp):
TTTGAAACACTATTTGAAAT
Found at i:75414153 original size:27 final size:26
Alignment explanation
Indices: 75414122--75414175 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
75414112 TATCAAATAT
*
75414122 ATTTTATAATTTA-AATTTAATACTTA
1 ATTTTTTAATTTATAA-TTAATACTTA
75414148 ATTTTTTAATTTATTAATTAATACTTA
1 ATTTTTTAATTTA-TAATTAATACTTA
75414175 A
1 A
75414176 ATCCTAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 12 0.48
27 11 0.44
28 2 0.08
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.56
Consensus pattern (26 bp):
ATTTTTTAATTTATAATTAATACTTA
Found at i:75414841 original size:181 final size:181
Alignment explanation
Indices: 75414530--75414890 Score: 488
Period size: 181 Copynumber: 2.0 Consensus size: 181
75414520 TGAGGTTTGT
* * * * *
75414530 AGTTAGGGTCAATGAATAGGTTGAGCTGTTGAATTTATTTTCGCAATTTAGTATTAGAATGAGCC
1 AGTTAGGGTCAATGAATAAGTCGAGCAGTTGAAATTATTTTCGCAATTTAGTACTAGAATGAGCC
** ** * *** *
75414595 TGTTGGTTTGGTGGTTGAATAAGTGTTAGTTTATCATTAGGTCTTGGGTTCAAGTCCTTATGTGT
66 TACTGGTTCAGTGGTTGAATAAGTGTTAGTCTATCATTAGGTCTCAAGTTCAAGTCCTCATGTGT
*
75414660 GTTATTTTAGTTTTGGTTCAAATCTAGTTTTGTTTTAAAGATTAATTATTA
131 GTTATTTTAGTTTCGGTTCAAATCTAGTTTTGTTTTAAAGATTAATTATTA
* * * *
75414711 AGTTAGGGTCAATGAGTAAGTCGAGCAGTTGAAATTATTTTCTCAATTTAGTGCTAGAATGAGTC
1 AGTTAGGGTCAATGAATAAGTCGAGCAGTTGAAATTATTTTCGCAATTTAGTACTAGAATGAGCC
* * **
75414776 TACTGGTTCAGTGGTTGAATGAGTGTTAGTCTATCATTGGGTCTCAAGTTTGAGTCCTCATGTGT
66 TACTGGTTCAGTGGTTGAATAAGTGTTAGTCTATCATTAGGTCTCAAGTTCAAGTCCTCATGTGT
* * *
75414841 GTTATTTTAGTTTCGGTTTAAGTCTAGTTTTGTTTTAAAGGTTAATTATT
131 GTTATTTTAGTTTCGGTTCAAATCTAGTTTTGTTTTAAAGATTAATTATT
75414891 TATTTACTTT
Statistics
Matches: 154, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
181 154 1.00
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.44
Consensus pattern (181 bp):
AGTTAGGGTCAATGAATAAGTCGAGCAGTTGAAATTATTTTCGCAATTTAGTACTAGAATGAGCC
TACTGGTTCAGTGGTTGAATAAGTGTTAGTCTATCATTAGGTCTCAAGTTCAAGTCCTCATGTGT
GTTATTTTAGTTTCGGTTCAAATCTAGTTTTGTTTTAAAGATTAATTATTA
Found at i:75417671 original size:27 final size:27
Alignment explanation
Indices: 75417641--75417696 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
75417631 TTGTAATGTT
*
75417641 TTCAAATTTTAGTGTTGACATCACAAC
1 TTCAAATTTTAGAGTTGACATCACAAC
*
75417668 TTCAAATTTTGGAGTTGACATCACAAC
1 TTCAAATTTTAGAGTTGACATCACAAC
75417695 TT
1 TT
75417697 TAAGGGTTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (27 bp):
TTCAAATTTTAGAGTTGACATCACAAC
Found at i:75427267 original size:59 final size:59
Alignment explanation
Indices: 75427182--75427341 Score: 196
Period size: 59 Copynumber: 2.7 Consensus size: 59
75427172 TAACTTAATA
* * *
75427182 AAAAAAAAGTTTAGGCCTTAAAGTGAGAACAATTGCCAAGTTCACG-GACTAATTTGGAT
1 AAAAAAAAGTTTAGGCCTCAATGTGAGAACAATTGTCAAGTTCA-GAGACTAATTTGGAT
* * * *
75427241 AAAAAAAAGTTTAGGCCCCAATGTGAGAATAATTTTCAAGTTCAGAGCCTAATTTGGAT
1 AAAAAAAAGTTTAGGCCTCAATGTGAGAACAATTGTCAAGTTCAGAGACTAATTTGGAT
* * * * *
75427300 AAAAGAAAGTTCAAGCTTCAATGTGAGAACATTTGTCAAGTT
1 AAAAAAAAGTTTAGGCCTCAATGTGAGAACAATTGTCAAGTT
75427342 AAAAGGCTAA
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
58 1 0.01
59 84 0.99
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (59 bp):
AAAAAAAAGTTTAGGCCTCAATGTGAGAACAATTGTCAAGTTCAGAGACTAATTTGGAT
Found at i:75432668 original size:31 final size:31
Alignment explanation
Indices: 75432625--75432691 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
75432615 AATTATATAT
* *
75432625 ATATATATATGAAACTTTGATTATAATTCAA
1 ATATATACATGAAACTTTCATTATAATTCAA
*
75432656 ATATATACATGAAACTTTCATTTTAATTCAA
1 ATATATACATGAAACTTTCATTATAATTCAA
*
75432687 TTATA
1 ATATA
75432692 CACGTTTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (31 bp):
ATATATACATGAAACTTTCATTATAATTCAA
Found at i:75432980 original size:25 final size:24
Alignment explanation
Indices: 75432926--75432985 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 24
75432916 GCATTAAATA
* * *
75432926 AATAAATAAAATTATTTTTATATT
1 AATAAATATAATTATTTGTACATT
*
75432950 AGATAAATATAATTATTTGTGCATGT
1 A-ATAAATATAATTATTTGTACAT-T
75432976 AAT-AATATAA
1 AATAAATATAA
75432986 ATATAAAATG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 8 0.27
25 20 0.67
26 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (24 bp):
AATAAATATAATTATTTGTACATT
Found at i:75443180 original size:30 final size:28
Alignment explanation
Indices: 75443144--75443200 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 28
75443134 TTCACTCACA
75443144 TCCCTAA-ATTTCAAAATTTTTATAATTTAG
1 TCCCTAATA-TTCAAAA--TTTATAATTTAG
75443174 TCCCTAATATTCAAAATTTATAATTTA
1 TCCCTAATATTCAAAATTTATAATTTA
75443201 TTCCACAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 11 0.42
30 14 0.54
31 1 0.04
ACGTcount: A:0.39, C:0.14, G:0.02, T:0.46
Consensus pattern (28 bp):
TCCCTAATATTCAAAATTTATAATTTAG
Found at i:75443524 original size:5 final size:5
Alignment explanation
Indices: 75443514--75443627 Score: 228
Period size: 5 Copynumber: 22.8 Consensus size: 5
75443504 CTTTTTCCTT
75443514 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
75443564 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
75443614 TATAA TATAA TATA
1 TATAA TATAA TATA
75443628 CACTTAACTT
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 109 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:75446026 original size:26 final size:26
Alignment explanation
Indices: 75445990--75446041 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
75445980 CGATAGAAGA
75445990 CTTGATGATAAGAATCATATGATGTT
1 CTTGATGATAAGAATCATATGATGTT
75446016 CTTGATGATAAGAATCATATGATGTT
1 CTTGATGATAAGAATCATATGATGTT
75446042 ATTTTCTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (26 bp):
CTTGATGATAAGAATCATATGATGTT
Found at i:75448739 original size:31 final size:31
Alignment explanation
Indices: 75448662--75448740 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 31
75448652 GTAAGTTCAT
*
75448662 ATGAA-CTATACTATGTAT-ATTTTTTATTAA
1 ATGAATCTATA-TATATATGATTTTTTATTAA
*
75448692 ATTGAATGT-TAT-TATATGATTTTTT-TTGAA
1 A-TGAATCTATATATATATGATTTTTTATT-AA
75448722 ATGAATCTATATATATATG
1 ATGAATCTATATATATATG
75448741 TTATTATACA
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
29 12 0.30
30 15 0.38
31 12 0.30
32 1 0.03
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (31 bp):
ATGAATCTATATATATATGATTTTTTATTAA
Found at i:75451870 original size:57 final size:57
Alignment explanation
Indices: 75451797--75451910 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
75451787 AAGTTTCTTG
*
75451797 GCACTGATCATTCCAGACGAACTAAAAATTCTTTTGCAACAACTTTGTCATCGGCAA
1 GCACTGATCATCCCAGACGAACTAAAAATTCTTTTGCAACAACTTTGTCATCGGCAA
75451854 GCACTGATCATCCCAGACGAACTAAAAATTCTTTTGCAACAACTTTGTCATCGGCAA
1 GCACTGATCATCCCAGACGAACTAAAAATTCTTTTGCAACAACTTTGTCATCGGCAA
75451911 AACTATCTTC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (57 bp):
GCACTGATCATCCCAGACGAACTAAAAATTCTTTTGCAACAACTTTGTCATCGGCAA
Found at i:75454373 original size:41 final size:42
Alignment explanation
Indices: 75454316--75454395 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
75454306 TTGCAAGGGA
*
75454316 CACACGGCCAAGTCACACA-CCCGTGTGT-TAGCCATGTGTCT
1 CACACGGCCAAGTCACA-AGCCCATGTGTCTAGCCATGTGTCT
* * *
75454357 CACACGGTCGAGTCACAAGCCCATGTGTCTAGCCGTGTG
1 CACACGGCCAAGTCACAAGCCCATGTGTCTAGCCATGTG
75454396 GACTCAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 1 0.03
41 23 0.70
42 9 0.27
ACGTcount: A:0.21, C:0.33, G:0.25, T:0.21
Consensus pattern (42 bp):
CACACGGCCAAGTCACAAGCCCATGTGTCTAGCCATGTGTCT
Found at i:75456200 original size:17 final size:18
Alignment explanation
Indices: 75456173--75456206 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
75456163 AACCTTAGCT
75456173 TTTTCTCTTTTCTTTCTC
1 TTTTCTCTTTTCTTTCTC
75456191 TTTT-TCTTTTCTTTCT
1 TTTTCTCTTTTCTTTCT
75456207 TTCCTTCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTCTCTTTTCTTTCTC
Found at i:75456209 original size:25 final size:24
Alignment explanation
Indices: 75456173--75456259 Score: 63
Period size: 25 Copynumber: 3.6 Consensus size: 24
75456163 AACCTTAGCT
* *
75456173 TTTTCTCTTTTCTTTCTCTTTTTC
1 TTTTCTCTTTTCCTTCTCTGTTTC
*
75456197 TTTTCTTTCTTTCCTTCTCTGTTTC
1 TTTTCTCT-TTTCCTTCTCTGTTTC
* * * *
75456222 ATTTCAACGTTTGCTTCT-T-TTTC
1 TTTTC-TCTTTTCCTTCTCTGTTTC
75456245 TATTTCT-TTTTCCTT
1 T-TTTCTCTTTTCCTT
75456260 TAGTATATAA
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
22 6 0.12
23 4 0.08
24 12 0.25
25 26 0.54
ACGTcount: A:0.05, C:0.24, G:0.03, T:0.68
Consensus pattern (24 bp):
TTTTCTCTTTTCCTTCTCTGTTTC
Found at i:75457145 original size:21 final size:22
Alignment explanation
Indices: 75457096--75457157 Score: 90
Period size: 23 Copynumber: 2.8 Consensus size: 22
75457086 TTACATCATC
* *
75457096 AACAAAAGCTCATAAGAGCTGGT
1 AACAAAAGCTCGTAAGAGCT-GA
75457119 AACAAAAGCTCGTAAGAGCT-A
1 AACAAAAGCTCGTAAGAGCTGA
75457140 AACAAAAGCTCGTAAGAG
1 AACAAAAGCTCGTAAGAG
75457158 TTGATCCACC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 18 0.49
23 19 0.51
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (22 bp):
AACAAAAGCTCGTAAGAGCTGA
Found at i:75461600 original size:30 final size:30
Alignment explanation
Indices: 75461566--75461662 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 30
75461556 AGCTCACTCC
* *
75461566 TAGCTCATCTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * * * *
75461596 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
75461626 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
75461656 TAGCTCA
1 TAGCTCA
75461663 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:75463243 original size:28 final size:29
Alignment explanation
Indices: 75463184--75463247 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
75463174 GGCCAGATGA
**
75463184 GCCATATGAATTTGATTTAGGCCTAATGG
1 GCCATATGAATGAGATTTAGGCCTAATGG
* *
75463213 GCCATATGAATGAGA-TTGGGCCTAGTGG
1 GCCATATGAATGAGATTTAGGCCTAATGG
75463241 GCCATAT
1 GCCATAT
75463248 ACATGTATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (29 bp):
GCCATATGAATGAGATTTAGGCCTAATGG
Found at i:75466800 original size:8 final size:8
Alignment explanation
Indices: 75466784--75466817 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
75466774 CACACGTTAG
75466784 AATGCCGA
1 AATGCCGA
*
75466792 AAAGCCGA
1 AATGCCGA
75466800 AATGCCGA
1 AATGCCGA
75466808 AATGCCGA
1 AATGCCGA
75466816 AA
1 AA
75466818 GTCTGGCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.44, C:0.24, G:0.24, T:0.09
Consensus pattern (8 bp):
AATGCCGA
Found at i:75467075 original size:28 final size:27
Alignment explanation
Indices: 75467039--75467104 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
75467029 GCTTGGAATT
75467039 GATTCGGGCCAGATAGACCATATGAATGA
1 GATT-GGGCCAG-TAGACCATATGAATGA
* * *
75467068 GATTGGGCGTAGTGGGCCATATGAATGA
1 GATTGGGC-CAGTAGACCATATGAATGA
75467096 GATTGGGCC
1 GATTGGGCC
75467105 TAATGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 26 0.81
29 6 0.19
ACGTcount: A:0.27, C:0.15, G:0.35, T:0.23
Consensus pattern (27 bp):
GATTGGGCCAGTAGACCATATGAATGA
Found at i:75467111 original size:28 final size:28
Alignment explanation
Indices: 75467056--75467118 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
75467046 GCCAGATAGA
* *
75467056 CCATATGAATGAGATTGGGCGTAGTGGG
1 CCATATGAATGAGATTGGGCCTAATGGG
75467084 CCATATGAATGAGATTGGGCCTAATGGG
1 CCATATGAATGAGATTGGGCCTAATGGG
75467112 CCATATG
1 CCATATG
75467119 CATGTACGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.25
Consensus pattern (28 bp):
CCATATGAATGAGATTGGGCCTAATGGG
Found at i:75467816 original size:11 final size:11
Alignment explanation
Indices: 75467800--75467824 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
75467790 TTGCATGTAT
75467800 GATATTATTGC
1 GATATTATTGC
75467811 GATATTATTGC
1 GATATTATTGC
75467822 GAT
1 GAT
75467825 GTGGGCTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (11 bp):
GATATTATTGC
Found at i:75469701 original size:105 final size:105
Alignment explanation
Indices: 75469519--75469724 Score: 313
Period size: 105 Copynumber: 2.0 Consensus size: 105
75469509 ACGCACTTTG
** *
75469519 AATCACTCGATTTAGATTTCAGGAGCTCAATTTATGATTGTTTTAGTGAAGATTGCATGAGTAGA
1 AATCACTCGATTTAGATTTCAGGAGCTCAATTTATGACCGTTTTAGTGAAGATTGCACGAGTAGA
* *
75469584 ATTTTTGGATGAAATTAGTACAAAAATTACGAGTTTTTTT
66 ATTTCTAGATGAAATTAGTACAAAAATTACGAGTTTTTTT
* * * **
75469624 AATCACTTGATTTCGATTTCAGGGGCTCAATTTATGACCGTTTTAGTGAAGATTGTGCGAGTAGA
1 AATCACTCGATTTAGATTTCAGGAGCTCAATTTATGACCGTTTTAGTGAAGATTGCACGAGTAGA
*
75469689 ATTTCTAGATGAAATTATTACAAAAATTACGAGTTT
66 ATTTCTAGATGAAATTAGTACAAAAATTACGAGTTT
75469725 AAGGCTTTTA
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
105 90 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (105 bp):
AATCACTCGATTTAGATTTCAGGAGCTCAATTTATGACCGTTTTAGTGAAGATTGCACGAGTAGA
ATTTCTAGATGAAATTAGTACAAAAATTACGAGTTTTTTT
Found at i:75469845 original size:19 final size:20
Alignment explanation
Indices: 75469798--75469847 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 20
75469788 ATGAGCTCAA
75469798 TATTGTATTTATTAGGTTTTAT
1 TATT-TATTTATTA-GTTTTAT
75469820 TA--T-TTTATTA-TTTTAT
1 TATTTATTTATTAGTTTTAT
75469836 TATTTATTTATT
1 TATTTATTTATT
75469848 CCAAACTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
16 8 0.32
18 8 0.32
19 7 0.28
22 2 0.08
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (20 bp):
TATTTATTTATTAGTTTTAT
Found at i:75469847 original size:8 final size:8
Alignment explanation
Indices: 75469814--75469840 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
75469804 ATTTATTAGG
75469814 TTTTATTA
1 TTTTATTA
75469822 TTTTATTA
1 TTTTATTA
75469830 TTTTATTA
1 TTTTATTA
75469838 TTT
1 TTT
75469841 ATTTATTCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTATTA
Found at i:75471819 original size:11 final size:10
Alignment explanation
Indices: 75471803--75471844 Score: 52
Period size: 9 Copynumber: 4.3 Consensus size: 10
75471793 TGTTTAATAA
75471803 TTTTTGTAAAT
1 TTTTTGT-AAT
75471814 TTTTTGTAA-
1 TTTTTGTAAT
*
75471823 TTTTT-TATT
1 TTTTTGTAAT
75471832 TTTTTGTAAT
1 TTTTTGTAAT
75471842 TTT
1 TTT
75471845 ATATATTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
8 2 0.07
9 10 0.37
10 8 0.30
11 7 0.26
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (10 bp):
TTTTTGTAAT
Found at i:75471836 original size:18 final size:18
Alignment explanation
Indices: 75471784--75471873 Score: 72
Period size: 18 Copynumber: 4.8 Consensus size: 18
75471774 CTTTGGGTTT
**
75471784 TTTTTTATTTGTTTAATAA
1 TTTTTTATTT-TTTTGTAA
*
75471803 TTTTTGTAAATTTTTTGTAA
1 TTTTT-T-ATTTTTTTGTAA
75471823 TTTTTTATTTTTTTGTAA
1 TTTTTTATTTTTTTGTAA
* **
75471841 TTTTATATATTTTCAGTAA
1 TTTTTTAT-TTTTTTGTAA
**
75471860 TTTCCTATTTTTTT
1 TTTTTTATTTTTTT
75471874 AAAAAAGTTT
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
18 22 0.39
19 20 0.35
20 12 0.21
21 3 0.05
ACGTcount: A:0.22, C:0.03, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTTTTATTTTTTTGTAA
Found at i:75471939 original size:18 final size:18
Alignment explanation
Indices: 75471918--75471976 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
75471908 ATACAATAAT
*
75471918 TTTTATATTTTTTTACAC
1 TTTTATATTTTTTTACAA
* * *
75471936 TTTTTTATTATTTTATAA
1 TTTTATATTTTTTTACAA
* * *
75471954 TTTTATAATTTTTAATAA
1 TTTTATATTTTTTTACAA
75471972 TTTTA
1 TTTTA
75471977 AAGAAAAATC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTATATTTTTTTACAA
Found at i:75471973 original size:10 final size:9
Alignment explanation
Indices: 75471913--75471975 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 9
75471903 GTCATATACA
75471913 ATAATTTTT
1 ATAATTTTT
75471922 AT-ATTTTT
1 ATAATTTTT
*
75471930 TTACACTTTTT
1 ATA-A-TTTTT
*
75471941 -TATTATTTT
1 ATAAT-TTTT
75471950 ATAA-TTTT
1 ATAATTTTT
75471958 ATAATTTTT
1 ATAATTTTT
75471967 AATAATTTT
1 -ATAATTTT
75471976 AAAGAAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
8 16 0.36
9 10 0.23
10 13 0.30
11 5 0.11
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (9 bp):
ATAATTTTT
Found at i:75472433 original size:4 final size:4
Alignment explanation
Indices: 75472424--75472452 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
75472414 ACGTGCTGCA
75472424 ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
75472453 TAAATTACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:75480463 original size:43 final size:43
Alignment explanation
Indices: 75480415--75480557 Score: 205
Period size: 43 Copynumber: 3.3 Consensus size: 43
75480405 TTCAACTAAC
* * * * *
75480415 TCGCACACTTGGTGACAATTAATTAGTCGAAGCTATAATTATT
1 TCGCACACTTAGTGACAAATAATTAGCCGAAGCTATAATTGTA
* * *
75480458 TCGCACATTTAGTGCCAAATAACTAGCCGAAGCTATAATTGTA
1 TCGCACACTTAGTGACAAATAATTAGCCGAAGCTATAATTGTA
*
75480501 TCGCACACTTAGTGTCAAATAATTAGCCGAAGCTATAATTGTA
1 TCGCACACTTAGTGACAAATAATTAGCCGAAGCTATAATTGTA
75480544 TCGCACACTTAGTG
1 TCGCACACTTAGTG
75480558 CCATTACATT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 89 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (43 bp):
TCGCACACTTAGTGACAAATAATTAGCCGAAGCTATAATTGTA
Found at i:75482929 original size:53 final size:52
Alignment explanation
Indices: 75482792--75482954 Score: 199
Period size: 54 Copynumber: 3.1 Consensus size: 52
75482782 CTATGGCAAC
*
75482792 AAATGAT-AAGCGATATCCGTATAAGACCATAGCTGAGCTATGGCATCGGAAA
1 AAATGATAAAGCGAT-TCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAA
* * *
75482844 ACAAGTGATAAA-TGATTCCCGTATAAGACCATAGCTGGGCTATGGCTTCGGATTA
1 A-AA-TGATAAAGCGATT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGA-AA
*
75482899 AAATGATACAAGCGATT-CGTATAAGACCATAGCTGGGCTATGGCATC-GAAG
1 AAATGATA-AAGCGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAA
75482950 AAATG
1 AAATG
75482955 TGATAGGTGC
Statistics
Matches: 96, Mismatches: 8, Indels: 15
0.81 0.07 0.13
Matches are distributed among these distances:
51 5 0.05
52 3 0.03
53 37 0.39
54 43 0.45
55 8 0.08
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (52 bp):
AAATGATAAAGCGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAA
Found at i:75489326 original size:43 final size:43
Alignment explanation
Indices: 75489278--75489423 Score: 202
Period size: 43 Copynumber: 3.4 Consensus size: 43
75489268 TTCAACTAAC
* * * *
75489278 TCGCACACTTAGTGCCAATTAATTAGTCGAAGCTATAATTATT
1 TCGCACACTTAGTGCCAAATAATTAGCCGAAGCTATAATTGTA
* *
75489321 TCGCACATTTAGTGCCAAATAACTAGCCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTAGCCGAAGCTATAATTGTA
* * *
75489364 TAGCATACTTAGTGTCAAATAATTAGCCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTAGCCGAAGCTATAATTGTA
*
75489407 TCACACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
75489424 TTACATTAAA
Statistics
Matches: 88, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAAATAATTAGCCGAAGCTATAATTGTA
Found at i:75491717 original size:18 final size:19
Alignment explanation
Indices: 75491675--75491718 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
75491665 GAGTTCATGC
* * *
75491675 AAGAAAGCACGTAAAATGT
1 AAGAAAACACATAAAATGA
75491694 AAGAAAACACATAAAAT-A
1 AAGAAAACACATAAAATGA
75491712 AAGAAAA
1 AAGAAAA
75491719 ATAGTACACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.66, C:0.09, G:0.14, T:0.11
Consensus pattern (19 bp):
AAGAAAACACATAAAATGA
Found at i:75493736 original size:32 final size:30
Alignment explanation
Indices: 75493670--75493737 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 30
75493660 TGGTGTTACA
* * *
75493670 GTATCAAGCACTCTGTGCTGGTGTTATATT
1 GTATCAAGCACTATGTACTGGTGTGATATT
*
75493700 -TATCAAGTACTATGTACTGGTGGTGGATATT
1 GTATCAAGCACTATGTACTGGT-GT-GATATT
75493731 GTATCAA
1 GTATCAA
75493738 TGGCTTGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 18 0.58
30 2 0.06
31 5 0.16
32 6 0.19
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (30 bp):
GTATCAAGCACTATGTACTGGTGTGATATT
Found at i:75495622 original size:127 final size:127
Alignment explanation
Indices: 75495485--75495787 Score: 360
Period size: 127 Copynumber: 2.4 Consensus size: 127
75495475 TCGAAACCCG
** *
75495485 GCACGGTAGGGCATGATTCATTGAACTTCCAAACATTGAACATTGCCTTGCTTTAAAATTTATAA
1 GCACGGTAGGGCATGATTCACCGAACTTCCAAACATTGAACATTGCCTTGCTTTAAAATTTAGAA
* *
75495550 AACACGAGTGAAATACTAAAGGAACATTCAATTATTTGGAACAAACCG-GAAATCAAAAACCA
66 AACACGAGTGAAATACTAAAAGAACATTCAATTATTTGGAACAAA-CGAGAAACCAAAAACCA
* * * * * * * *
75495612 GCACGATAGGGCACGATTCCCCGAATTTCCAAACCTTGAACATTGCCTTGTTTTAGAATTTGGAA
1 GCACGGTAGGGCATGATTCACCGAACTTCCAAACATTGAACATTGCCTTGCTTTAAAATTTAGAA
* * * * * *
75495677 AACACGAGTGAAATTCTAAAAGAATATTCGATTATTTTGAACAAACGAGAAACCGAAACCCA
66 AACACGAGTGAAATACTAAAAGAACATTCAATTATTTGGAACAAACGAGAAACCAAAAACCA
* * *
75495739 GCACGGTAGGGCATGATTTC-CCGAATTTCTAAACA-TCAGACATTGCCTT
1 GCACGGTAGGGCATGA-TTCACCGAACTTCCAAACATTGA-ACATTGCCTT
75495788 CATTTTAAAG
Statistics
Matches: 149, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
126 4 0.03
127 142 0.95
128 3 0.02
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (127 bp):
GCACGGTAGGGCATGATTCACCGAACTTCCAAACATTGAACATTGCCTTGCTTTAAAATTTAGAA
AACACGAGTGAAATACTAAAAGAACATTCAATTATTTGGAACAAACGAGAAACCAAAAACCA
Found at i:75502829 original size:29 final size:29
Alignment explanation
Indices: 75502797--75502863 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 29
75502787 TTATACTTTT
* * *
75502797 AAATAATTTTAATGATTTTT-AATTTTTAA
1 AAATAATTTT-ATAATTTTTAAATTCTAAA
*
75502826 AAATAAAATTTATAATTTTTAAATTCTAAA
1 AAAT-AATTTTATAATTTTTAAATTCTAAA
75502856 AAATAATT
1 AAATAATT
75502864 AAATATTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
29 15 0.48
30 16 0.52
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (29 bp):
AAATAATTTTATAATTTTTAAATTCTAAA
Found at i:75505113 original size:30 final size:30
Alignment explanation
Indices: 75505055--75505113 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
75505045 TATTTTATTG
* *
75505055 TTAATTTTATTATTATTTTAAAGGCATTTA
1 TTAATTTTATTATTATTGTAAAGACATTTA
* *
75505085 TTAATTTTGTTATTATTGTAGAGACATTT
1 TTAATTTTATTATTATTGTAAAGACATTT
75505114 GTTTGTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (30 bp):
TTAATTTTATTATTATTGTAAAGACATTTA
Found at i:75506001 original size:14 final size:15
Alignment explanation
Indices: 75505979--75506014 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
75505969 TTTCTTCTAA
75505979 TATAAATAAATATTT
1 TATAAATAAATATTT
*
75505994 TA-AAATAACTATTT
1 TATAAATAAATATTT
75506008 TATAAAT
1 TATAAAT
75506015 TCTGATAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (15 bp):
TATAAATAAATATTT
Found at i:75523244 original size:40 final size:40
Alignment explanation
Indices: 75523157--75523253 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
75523147 ACCATCTCCG
* * * *
75523157 TCCAACCCAACACACC-A-TATGGGGATAAGATCGACTCA
1 TCCAACCCTACACACCAAGTATGGGGATAAAATCAACCCA
* * *
75523195 CCCAGCCCTACAAACCAAGTATGGGGATAAAATCAACCCA
1 TCCAACCCTACACACCAAGTATGGGGATAAAATCAACCCA
75523235 TCCAACCCTACACACCAAG
1 TCCAACCCTACACACCAAG
75523254 AGGTACCGTA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
38 12 0.26
39 1 0.02
40 34 0.72
ACGTcount: A:0.38, C:0.35, G:0.13, T:0.13
Consensus pattern (40 bp):
TCCAACCCTACACACCAAGTATGGGGATAAAATCAACCCA
Found at i:75525696 original size:40 final size:40
Alignment explanation
Indices: 75525609--75525705 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
75525599 ACCATCTCTG
* *
75525609 TCCAACCCAACACACC-A-TATGGGGATAAGATCAACCAA
1 TCCAACCCTACACACCAAGTATGGGGATAAAATCAACCAA
* * * * *
75525647 CCCAGCCCTACAAACCAAGTATGGGGATAAAATTAACCCA
1 TCCAACCCTACACACCAAGTATGGGGATAAAATCAACCAA
75525687 TCCAACCCTACACACCAAG
1 TCCAACCCTACACACCAAG
75525706 AGGTACCGTA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
38 12 0.26
39 1 0.02
40 34 0.72
ACGTcount: A:0.40, C:0.34, G:0.12, T:0.13
Consensus pattern (40 bp):
TCCAACCCTACACACCAAGTATGGGGATAAAATCAACCAA
Found at i:75535857 original size:46 final size:46
Alignment explanation
Indices: 75535807--75535979 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
75535797 TGGTTGAGCA
75535807 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
75535853 TCCGAACTCGTTGAGTTGAGCCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75535898 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
75535946 CCCGAGCTCGTTGAGTTGAGTTTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75535980 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.57
47 28 0.27
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75537511 original size:25 final size:25
Alignment explanation
Indices: 75537483--75537533 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
75537473 CGTATTGGAA
*
75537483 TTTCAAGGTAGTTGGGAAAGGTACT
1 TTTCAAGGTACTTGGGAAAGGTACT
75537508 TTTCAAGGTACTTGGGAAAGGTACT
1 TTTCAAGGTACTTGGGAAAGGTACT
75537533 T
1 T
75537534 ACCTTGGTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.33
Consensus pattern (25 bp):
TTTCAAGGTACTTGGGAAAGGTACT
Found at i:75537530 original size:13 final size:13
Alignment explanation
Indices: 75537487--75537533 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
75537477 TTGGAATTTC
*
75537487 AAGGTAGTTGGGA
1 AAGGTACTTGGGA
***
75537500 AAGGTACTT-TTC
1 AAGGTACTTGGGA
75537512 AAGGTACTTGGGA
1 AAGGTACTTGGGA
75537525 AAGGTACTT
1 AAGGTACTT
75537534 ACCTTGGTAG
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.30
Consensus pattern (13 bp):
AAGGTACTTGGGA
Done.