Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 239 of 325
Found at i:75544425 original size:27 final size:28
Alignment explanation
Indices: 75544341--75544438 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
75544331 CATGAGATTG
* * * *
75544341 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
75544370 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
75544398 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75544425 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
75544439 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75544449 original size:27 final size:27
Alignment explanation
Indices: 75544369--75544451 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
75544359 TAAATTGTAC
* *
75544369 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
75544397 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
75544424 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
75544451 A
1 A
75544452 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:75544452 original size:29 final size:27
Alignment explanation
Indices: 75544341--75544452 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
75544331 CATGAGATTG
** * *
75544341 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
75544370 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
75544398 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
75544425 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
75544453 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:75551039 original size:6 final size:6
Alignment explanation
Indices: 75551028--75551061 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
75551018 AGGTTTCCAA
* *
75551028 AAATGG AAATGG AAATGG AAATGA AAATGT AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAAT
75551062 AAGTCATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.21
Consensus pattern (6 bp):
AAATGG
Found at i:75551253 original size:26 final size:26
Alignment explanation
Indices: 75551224--75551280 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
75551214 TACCTGAACC
*
75551224 AAAATCGTCAAAATTTTACTAAGGAT
1 AAAATCATCAAAATTTTACTAAGGAT
* *
75551250 AAAATCATCAAAATTTTACTAGGGGT
1 AAAATCATCAAAATTTTACTAAGGAT
75551276 AAAAT
1 AAAAT
75551281 AGGAATGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (26 bp):
AAAATCATCAAAATTTTACTAAGGAT
Found at i:75553342 original size:12 final size:12
Alignment explanation
Indices: 75553325--75553349 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75553315 ATGTAAGTGA
75553325 TCTTGATGATTT
1 TCTTGATGATTT
75553337 TCTTGATGATTT
1 TCTTGATGATTT
75553349 T
1 T
75553350 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:75554091 original size:46 final size:46
Alignment explanation
Indices: 75554041--75554259 Score: 205
Period size: 46 Copynumber: 4.7 Consensus size: 46
75554031 ACTTATGTGT
* * *
75554041 GCTAGTGTAAGACATGTCTTGGACATGCATCGGCCACATTATGGAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGGAA
* *
75554087 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CAC-TGAGAGGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACATGA-TGGA-A
* * *
75554135 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGA-GATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGGAA
* * * *
75554181 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-GAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGGAA
*
75554226 GGTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
75554260 GACTTGAGAT
Statistics
Matches: 144, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.01
46 67 0.47
47 50 0.35
48 25 0.17
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGGAA
Found at i:75554257 original size:140 final size:141
Alignment explanation
Indices: 75554044--75554306 Score: 358
Period size: 140 Copynumber: 1.9 Consensus size: 141
75554034 TATGTGTGCT
* *
75554044 AGTGTAAGACATGTCTTGGACATGCATCGGCCACATTATGGAAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGGAAGCTAGTGTAAGACCATGTCTGG
* * *
75554109 GACATGGCATCAGCAC-TGAGAGGA-GTGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCAGCC
66 GACATGGCATC-G-ACTTGAGA-GATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCC
75554170 TCGAGATGTAAGCC
128 TCGAGATGTAAGCC
* * *
75554184 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-GATGGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGGAAGCT-AGTGTAAGACCATGTCT
*
75554247 GGGACATGGCATCGACTTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
64 GGGACATGGCATCGACTTGAGAGATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
75554307 GGTACCTTAC
Statistics
Matches: 108, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
138 3 0.03
139 22 0.20
140 77 0.71
141 6 0.06
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGGAAGCTAGTGTAAGACCATGTCTGG
GACATGGCATCGACTTGAGAGATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCG
AGATGTAAGCC
Found at i:75554307 original size:47 final size:47
Alignment explanation
Indices: 75554044--75554307 Score: 244
Period size: 47 Copynumber: 5.7 Consensus size: 47
75554034 TATGTGTGCT
* * * *
75554044 AGTGTAAGA-CATGTCTTGGACAT-GCATCGGC-C-ACATTATGGAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGA-TAT-G-AGCC
* * *
75554090 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACT-GAGAGGA-GTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTCGAGA-TATGAGCC
* * * *
75554138 AGTGTAAGA-CATGTTTGGGACAT-GCATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGATATGAGCC
* *
75554184 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATG-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGAT-ATGAGCC
*
75554230 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATATGAGCC
75554277 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
75554308 GTACCTTACC
Statistics
Matches: 184, Mismatches: 21, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
45 5 0.03
46 69 0.38
47 79 0.43
48 25 0.14
49 2 0.01
50 1 0.01
51 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATATGAGCC
Found at i:75564567 original size:47 final size:44
Alignment explanation
Indices: 75564497--75564759 Score: 199
Period size: 47 Copynumber: 5.6 Consensus size: 44
75564487 TGTGTGTGCT
* *
75564497 AGTGTAAGACATGT-TCGGGACATGCATCGGCCACATTATGGAAGCT
1 AGTGTAAGACATGTCT-GGGACATGCATCGGCCACA-GAT-GAAGCC
* *
75564543 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACTAAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC--AGATGA-AGCC
* * *
75564591 AGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATG-AAGCC
* ** * *
75564637 AGTGTAAGACATGTCTAGGACATGCATCGATCATGAGATGATGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAGATGA-AGCC
* ***
75564683 AGTGTAAGACCATGTCTGGGACATGACATCGACTTGAGAT-ATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCACAGATGA--AGCC
75564730 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
75564760 AGCACCTTAC
Statistics
Matches: 184, Mismatches: 19, Indels: 27
0.80 0.08 0.12
Matches are distributed among these distances:
45 1 0.01
46 69 0.38
47 84 0.46
48 29 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAAGCC
Found at i:75564641 original size:46 final size:45
Alignment explanation
Indices: 75564537--75564759 Score: 220
Period size: 47 Copynumber: 4.8 Consensus size: 45
75564527 CCACATTATG
* * * *
75564537 GAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTAAGAT
1 GAAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGTCTC-GAGAT
* *
75564584 GAGTGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGTCTCGAGAT
1 GA-AGCCAGTGTAAGACCATGTCTGGGACATGCATC-GTCTCGAGAT
*
75564630 GTAAGCCAGTGTAAGA-CATGTCTAGGACATGCATCGATCAT-GAGAT
1 G-AAGCCAGTGTAAGACCATGTCTGGGACATGCATCG-TC-TCGAGAT
* * *
75564676 GATGGCCAGTGTAAGACCATGTCTGGGACATGACATCGACTTGAGAT
1 GA-AGCCAGTGTAAGACCATGTCTGGGACATG-CATCGTCTCGAGAT
75564723 -ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GA--AGCCAGTGTAAGACCATGTCTGGGACAT-GCATC
75564760 AGCACCTTAC
Statistics
Matches: 153, Mismatches: 12, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
45 2 0.01
46 61 0.40
47 72 0.47
48 18 0.12
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GAAGCCAGTGTAAGACCATGTCTGGGACATGCATCGTCTCGAGAT
Found at i:75568658 original size:43 final size:43
Alignment explanation
Indices: 75568496--75568660 Score: 172
Period size: 43 Copynumber: 3.8 Consensus size: 43
75568486 ACATTATGTT
* *
75568496 ATCGAGATGTGATTACATGTAAGACCATGTCTTGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * * * *
75568539 ATTG-TATTGTGATTACGTGAAAGACCATGTTTGGGACATTGGA
1 ATCGATA-TGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * * * *
75568582 ATCGTTAAT-TAATTTCATGTAAGACCCTGTCTGGGACAGTGGC
1 ATCGAT-ATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* *
75568625 ATCGATATGTGATAACATGTAAGACCATATCTGGGA
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGA
75568661 TATGGCTTTG
Statistics
Matches: 96, Mismatches: 22, Indels: 8
0.76 0.17 0.06
Matches are distributed among these distances:
42 3 0.03
43 90 0.94
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
Found at i:75577619 original size:13 final size:13
Alignment explanation
Indices: 75577601--75577632 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
75577591 TATAAAACTC
*
75577601 TGTTTTCAAGTTA
1 TGTTTTCAAGATA
75577614 TGTTTTCAAGATA
1 TGTTTTCAAGATA
75577627 TGTTTT
1 TGTTTT
75577633 ATGCGTGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.16, T:0.56
Consensus pattern (13 bp):
TGTTTTCAAGATA
Found at i:75578535 original size:18 final size:18
Alignment explanation
Indices: 75578514--75578582 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 18
75578504 ATTTTTGTTC
75578514 CGTTTTTGATAATTTCTA
1 CGTTTTTGATAATTTCTA
* *
75578532 CGTTTTTGTGATATGATTTTTGTTC
1 CG-TTTT-TGATA--A--TTT-CTA
75578557 CGTTTTTGATAATTTCTA
1 CGTTTTTGATAATTTCTA
75578575 CGTTTTTG
1 CGTTTTTG
75578583 TGATTGTTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
18 11 0.28
19 7 0.17
20 5 0.12
21 1 0.03
22 1 0.03
23 5 0.12
24 7 0.17
25 3 0.08
ACGTcount: A:0.16, C:0.10, G:0.16, T:0.58
Consensus pattern (18 bp):
CGTTTTTGATAATTTCTA
Found at i:75578561 original size:43 final size:43
Alignment explanation
Indices: 75578500--75578586 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
75578490 TTGATTAAGG
75578500 TATGATTTTTGTTCCGTTTTTGATAATTTCTACGTTTTTGTGA
1 TATGATTTTTGTTCCGTTTTTGATAATTTCTACGTTTTTGTGA
75578543 TATGATTTTTGTTCCGTTTTTGATAATTTCTACGTTTTTGTGA
1 TATGATTTTTGTTCCGTTTTTGATAATTTCTACGTTTTTGTGA
75578586 T
1 T
75578587 TGTTGCTTAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.16, C:0.09, G:0.16, T:0.59
Consensus pattern (43 bp):
TATGATTTTTGTTCCGTTTTTGATAATTTCTACGTTTTTGTGA
Found at i:75579133 original size:16 final size:16
Alignment explanation
Indices: 75579112--75579182 Score: 81
Period size: 16 Copynumber: 4.4 Consensus size: 16
75579102 GTTTGGTTCA
75579112 CTGTAATGGAATA-AGG
1 CTGTAATGGAATAGA-G
* *
75579128 CTGTAATTGAATAGAA
1 CTGTAATGGAATAGAG
* *
75579144 CTGCAATGGAATAAAG
1 CTGTAATGGAATAGAG
*
75579160 CTGTAATAGAATAGAG
1 CTGTAATGGAATAGAG
75579176 CTGTAAT
1 CTGTAAT
75579183 AAGTAATTCA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
16 44 0.98
17 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:75579152 original size:32 final size:32
Alignment explanation
Indices: 75579111--75579174 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
75579101 CGTTTGGTTC
* * *
75579111 ACTGTAATGGAATAAGGCTGTAATTGAATAGA
1 ACTGCAATGGAATAAAGCTGTAATAGAATAGA
75579143 ACTGCAATGGAATAAAGCTGTAATAGAATAGA
1 ACTGCAATGGAATAAAGCTGTAATAGAATAGA
75579175 GCTGTAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.25
Consensus pattern (32 bp):
ACTGCAATGGAATAAAGCTGTAATAGAATAGA
Found at i:75579249 original size:44 final size:46
Alignment explanation
Indices: 75579168--75579256 Score: 139
Period size: 44 Copynumber: 2.0 Consensus size: 46
75579158 AGCTGTAATA
75579168 GAATAGAGCTGTAATAAGTAATTCAATTGTTTGGTTGAATGGAATG
1 GAATAGAGCTGTAATAAGTAATTCAATTGTTTGGTTGAATGGAATG
*
75579214 GAATAGAGCTGTAAT-AG-AATTC-TTGTGTTTGGTTGAATGGAAT
1 GAATAGAGCTGTAATAAGTAATTCAAT-TGTTTGGTTGAATGGAAT
75579257 AGCTGTTGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 1 0.02
44 23 0.56
45 2 0.05
46 15 0.37
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.36
Consensus pattern (46 bp):
GAATAGAGCTGTAATAAGTAATTCAATTGTTTGGTTGAATGGAATG
Found at i:75579459 original size:38 final size:37
Alignment explanation
Indices: 75579388--75579459 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
75579378 TAAATAATAA
*
75579388 ATAATTTAACTAGATTTTAACATAATTATTATTAAAT
1 ATAATTTAACTACATTTTAACATAATTATTATTAAAT
*
75579425 ATAATTTAA-TAACATTCTTAATATAATTATTATTA
1 ATAATTTAACT-ACATT-TTAACATAATTATTATTA
75579460 TATGTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 1 0.03
37 13 0.42
38 17 0.55
ACGTcount: A:0.46, C:0.06, G:0.01, T:0.47
Consensus pattern (37 bp):
ATAATTTAACTACATTTTAACATAATTATTATTAAAT
Found at i:75583369 original size:48 final size:48
Alignment explanation
Indices: 75583119--75583366 Score: 442
Period size: 48 Copynumber: 5.2 Consensus size: 48
75583109 ATATACACAC
* *
75583119 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
75583167 ATCTCATACATATTTCATACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
75583215 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
75583263 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
75583311 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
75583359 ATCTCATA
1 ATCTCATA
75583367 TATCAATTTC
Statistics
Matches: 193, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 193 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:75587988 original size:35 final size:35
Alignment explanation
Indices: 75587942--75588011 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
75587932 ATCAAGAGAG
*
75587942 AAAGATAGCAAGGAGATGATGGGGAGCAATAATAT
1 AAAGATAGCAAGGAGATGATGGGGAGCAAGAATAT
75587977 AAAGATAGCAAGGAGATGATGGGGAGCAAGAATAT
1 AAAGATAGCAAGGAGATGATGGGGAGCAAGAATAT
75588012 CAAGTTGGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.46, C:0.06, G:0.33, T:0.16
Consensus pattern (35 bp):
AAAGATAGCAAGGAGATGATGGGGAGCAAGAATAT
Found at i:75589677 original size:46 final size:46
Alignment explanation
Indices: 75589625--75589944 Score: 417
Period size: 46 Copynumber: 7.0 Consensus size: 46
75589615 AGTGTGCTCT
* *
75589625 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
75589671 CTGATATGAAATGTGTAAGACCATGGTTGAAAGAAACCATGGAAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
75589717 CTGATATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
75589763 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
75589809 ATGACT-GGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGA-TATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
75589855 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * *
75589901 ATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
75589945 TCATGTCAAA
Statistics
Matches: 248, Mismatches: 24, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
46 247 1.00
47 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:75590250 original size:16 final size:17
Alignment explanation
Indices: 75590229--75590261 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
75590219 ATTATGGAAC
75590229 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
75590245 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
75590262 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:75591694 original size:26 final size:26
Alignment explanation
Indices: 75591665--75591742 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
75591655 TGATACAAAT
*
75591665 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75591691 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75591717 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75591743 CGATGGGAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75599865 original size:26 final size:26
Alignment explanation
Indices: 75599836--75599943 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
75599826 TGATAAAAAT
75599836 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75599862 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75599888 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75599914 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75599940 TGAT
1 TGAT
75599944 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75605374 original size:18 final size:18
Alignment explanation
Indices: 75605348--75605392 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
75605338 ATTGAGGGAT
75605348 GAAATTGAAATCTATTTC
1 GAAATTGAAATCTATTTC
*
75605366 GACATTGAAATCTATTTC
1 GAAATTGAAATCTATTTC
75605384 GAAATTGAA
1 GAAATTGAA
75605393 GCTCAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (18 bp):
GAAATTGAAATCTATTTC
Found at i:75607718 original size:28 final size:28
Alignment explanation
Indices: 75607663--75607721 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
75607653 CTCACGTCCT
*
75607663 GATGGACTTACCCCGTATTTACTGTCCC
1 GATGGACTTACCCCGTATTTACTATCCC
** * *
75607691 GATGGACTTACCTTGTGTTTATTATCCC
1 GATGGACTTACCCCGTATTTACTATCCC
75607719 GAT
1 GAT
75607722 AAACTTTATC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (28 bp):
GATGGACTTACCCCGTATTTACTATCCC
Found at i:75613675 original size:50 final size:50
Alignment explanation
Indices: 75613554--75613743 Score: 213
Period size: 50 Copynumber: 3.8 Consensus size: 50
75613544 TGAGGTTGCA
* * * * * *
75613554 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAGTGTGGTCACG
** *
75613605 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATAGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTGTGGTCACG
* *
75613655 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-TGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTGTGGTCACG
* * * *
75613704 TGTCTAGTACTAAGTACAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
75613744 CTTCGGCTAC
Statistics
Matches: 119, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.01
49 39 0.33
50 48 0.40
51 31 0.26
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTGTGGTCACG
Found at i:75621991 original size:43 final size:43
Alignment explanation
Indices: 75621930--75622039 Score: 177
Period size: 43 Copynumber: 2.6 Consensus size: 43
75621920 GGGCTTTGAC
75621930 CCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCCTCGAG
1 CCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCCTCGAG
* * *
75621973 CCTAGCAAGCTATAATGCCGATGAAATAATATCAGGCTTCGAG
1 CCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCCTCGAG
*
75622016 CCTAGCAGGCGA-AATGCCGGTGAA
1 CCTAGCAGGCTATAATGCCGGTGAA
75622040 TGAATTCAGA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 11 0.18
43 50 0.82
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (43 bp):
CCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCCTCGAG
Found at i:75624068 original size:18 final size:18
Alignment explanation
Indices: 75623973--75624070 Score: 108
Period size: 18 Copynumber: 5.4 Consensus size: 18
75623963 TATCATTATC
* * *
75623973 ATTCAATAATAATTAATT
1 ATTCAGTAATAGTCAATT
*
75623991 ATTCAATAATAGTCAATT
1 ATTCAGTAATAGTCAATT
**
75624009 ATTCAGTAACGGTCAATT
1 ATTCAGTAATAGTCAATT
* *
75624027 ATTCAGTAACAGTCAGTCT
1 ATTCAGTAATAGTCAAT-T
75624046 -TTCAGTAATAGTCAATT
1 ATTCAGTAATAGTCAATT
75624063 ATTCAGTA
1 ATTCAGTA
75624071 CATTTATTTA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
17 1 0.01
18 67 0.97
19 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.38
Consensus pattern (18 bp):
ATTCAGTAATAGTCAATT
Found at i:75624475 original size:20 final size:20
Alignment explanation
Indices: 75624450--75624492 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
75624440 TTCAGTACAT
75624450 TTTTCAGCT-AATCATATATA
1 TTTTCAGCTCAAT-ATATATA
*
75624470 TTTTCAGTTCAATATATATA
1 TTTTCAGCTCAATATATATA
75624490 TTT
1 TTT
75624493 CAATTCACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.51
Consensus pattern (20 bp):
TTTTCAGCTCAATATATATA
Found at i:75624486 original size:18 final size:19
Alignment explanation
Indices: 75624463--75624499 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
75624453 TCAGCTAATC
*
75624463 ATATATAT-TTTCAGTTCA
1 ATATATATATTTCAATTCA
75624481 ATATATATATTTCAATTCA
1 ATATATATATTTCAATTCA
75624500 CTTTACATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.49
Consensus pattern (19 bp):
ATATATATATTTCAATTCA
Found at i:75625354 original size:20 final size:18
Alignment explanation
Indices: 75625318--75625362 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
75625308 AAACCTTAAA
75625318 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
75625336 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
75625356 -TTTCCCT
1 TTTTCCCT
75625363 ACTTTTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:75627884 original size:16 final size:17
Alignment explanation
Indices: 75627863--75627896 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
75627853 AAATAAGAAT
75627863 TGAAAACA-AAATAAAC
1 TGAAAACAGAAATAAAC
75627879 TGAAAACAGGAAATAAAC
1 TGAAAACA-GAAATAAAC
75627897 ATGCAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.65, C:0.12, G:0.12, T:0.12
Consensus pattern (17 bp):
TGAAAACAGAAATAAAC
Found at i:75629503 original size:12 final size:12
Alignment explanation
Indices: 75629488--75629519 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
75629478 TTTATTGAAA
75629488 TTTAATTTAATT
1 TTTAATTTAATT
75629500 TTTAATTTAATT
1 TTTAATTTAATT
*
75629512 ATTAATTT
1 TTTAATTT
75629520 TTCTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
TTTAATTTAATT
Found at i:75632329 original size:49 final size:49
Alignment explanation
Indices: 75632249--75632431 Score: 213
Period size: 49 Copynumber: 3.7 Consensus size: 49
75632239 TCTATTGTGA
* *
75632249 GGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * ** *
75632298 GGTCGCATGTGTAGTACTAAGTGCAGACTACTATGCATACCCGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * **
75632349 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
75632398 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTA
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
75632432 TGCGTACTAG
Statistics
Matches: 110, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
49 41 0.37
50 31 0.28
51 38 0.35
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:75632372 original size:51 final size:50
Alignment explanation
Indices: 75632249--75632444 Score: 214
Period size: 50 Copynumber: 3.9 Consensus size: 50
75632239 TCTATTGTGA
* * *
75632249 GGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTT
* * * * * *
75632298 GGTCGCATGTGTAGTACTAAGTGCAGACTACTATGCATACCCGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TTT
* * * ** *
75632349 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTT
* * *
75632399 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACTAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
75632445 GCCTTGTCTA
Statistics
Matches: 118, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
49 39 0.33
50 41 0.35
51 38 0.32
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTT
Found at i:75632477 original size:101 final size:100
Alignment explanation
Indices: 75632255--75632450 Score: 230
Period size: 101 Copynumber: 1.9 Consensus size: 100
75632245 GTGAGGTCAT
* * * *
75632255 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
* *
75632320 GCAGACTACTATGCATACCCGATAACTTTGATCAC
66 GCAGACTACTATGCATACCAGATAACCTTGATCAC
* * * ** *
75632355 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAG
* * * * *
75632420 TGTAGGCTACTATGCGTACTAGATAGCCTTG
65 TGCAGACTACTATGCATACCAGATAACCTTG
75632451 TCTACAAGTG
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
100 39 0.48
101 43 0.52
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (100 bp):
GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
GCAGACTACTATGCATACCAGATAACCTTGATCAC
Found at i:75636280 original size:17 final size:19
Alignment explanation
Indices: 75636238--75636281 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
75636228 ATGAAATTTT
*
75636238 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
75636257 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
75636275 AA-TATTA
1 AATTATTA
75636282 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:75638632 original size:20 final size:20
Alignment explanation
Indices: 75638609--75638666 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
75638599 TAAACATGGT
75638609 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
75638629 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
75638649 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
75638667 GTGTATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:75638649 original size:11 final size:11
Alignment explanation
Indices: 75638613--75638666 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
75638603 CATGGTATGT
75638613 ATGATATGCAC
1 ATGATATGCAC
* *
75638624 ATGACATG--T
1 ATGATATGCAC
75638633 ATGATATGCAC
1 ATGATATGCAC
*
75638644 ATGATATG--T
1 ATGATATGCAC
75638653 ATGATATGCAC
1 ATGATATGCAC
75638664 ATG
1 ATG
75638667 GTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:75638795 original size:24 final size:24
Alignment explanation
Indices: 75638716--75638833 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
75638706 GAGGAAGTGC
*
75638716 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
75638740 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
75638763 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
75638786 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
75638810 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
75638834 ATGATAAAGT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
23 45 0.52
24 31 0.36
25 11 0.13
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:75638809 original size:47 final size:46
Alignment explanation
Indices: 75638717--75638812 Score: 165
Period size: 47 Copynumber: 2.1 Consensus size: 46
75638707 AGGAAGTGCA
*
75638717 AAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
75638763 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
75638810 AAA
1 AAA
75638813 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 22 0.47
47 25 0.53
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:75639062 original size:31 final size:31
Alignment explanation
Indices: 75639027--75639090 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
75639017 CGTTTACAGT
75639027 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
75639058 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
75639089 AA
1 AA
75639091 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:75640251 original size:15 final size:15
Alignment explanation
Indices: 75640231--75640259 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75640221 AAATTAAATC
75640231 TCAATAAAAAGGGAG
1 TCAATAAAAAGGGAG
75640246 TCAATAAAAAGGGA
1 TCAATAAAAAGGGA
75640260 AAAATTCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.24, T:0.14
Consensus pattern (15 bp):
TCAATAAAAAGGGAG
Found at i:75640360 original size:11 final size:11
Alignment explanation
Indices: 75640344--75640368 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
75640334 GGCTCAAAGA
75640344 GGTTCACTAGG
1 GGTTCACTAGG
75640355 GGTTCACTAGG
1 GGTTCACTAGG
75640366 GGT
1 GGT
75640369 CAATTATGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.16, G:0.40, T:0.28
Consensus pattern (11 bp):
GGTTCACTAGG
Found at i:75654057 original size:19 final size:20
Alignment explanation
Indices: 75654017--75654064 Score: 73
Period size: 18 Copynumber: 2.5 Consensus size: 20
75654007 TTCTCTTTTA
75654017 TTTATTTTTGTAAACTTATG
1 TTTATTTTTGTAAACTTATG
75654037 TTTTATTTTT-TAAAC-TATG
1 -TTTATTTTTGTAAACTTATG
75654056 TTTATTTTT
1 TTTATTTTT
75654065 ATGGTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.33
19 4 0.15
20 5 0.19
21 9 0.33
ACGTcount: A:0.23, C:0.04, G:0.06, T:0.67
Consensus pattern (20 bp):
TTTATTTTTGTAAACTTATG
Found at i:75658484 original size:18 final size:18
Alignment explanation
Indices: 75658461--75658497 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
75658451 CTAGCAATAC
* *
75658461 ATCATTGCTGCCTAAGTT
1 ATCATTGCTACCCAAGTT
75658479 ATCATTGCTACCCAAGTT
1 ATCATTGCTACCCAAGTT
75658497 A
1 A
75658498 GAAGAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (18 bp):
ATCATTGCTACCCAAGTT
Found at i:75660747 original size:29 final size:29
Alignment explanation
Indices: 75660703--75660759 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
75660693 ATACCATATA
* * *
75660703 TAACAAATTCTGCCACTAGGGCTCACATG
1 TAACAAAGTCTACCACTAAGGCTCACATG
*
75660732 TAACAAAGTCTACCACTAATGCTCACAT
1 TAACAAAGTCTACCACTAAGGCTCACAT
75660760 ATAATAGAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (29 bp):
TAACAAAGTCTACCACTAAGGCTCACATG
Found at i:75664638 original size:25 final size:25
Alignment explanation
Indices: 75664596--75664660 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
75664586 TGTAAATAGT
* * * **
75664596 AAGCTCTTCCGAGATGAATAACGGG
1 AAGCTCATGCGAGCTGAATAACAAG
* *
75664621 AAGCTTATGCTAGCTGAATAACAAG
1 AAGCTCATGCGAGCTGAATAACAAG
75664646 AAGCTCATGCGAGCT
1 AAGCTCATGCGAGCT
75664661 AAGTATTGGG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (25 bp):
AAGCTCATGCGAGCTGAATAACAAG
Found at i:75671018 original size:31 final size:31
Alignment explanation
Indices: 75670980--75671042 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
75670970 CTATGTCGAA
75670980 AATTTTGAATTCAATACAAGAGGAATAGACT
1 AATTTTGAATTCAATACAAGAGGAATAGACT
75671011 AATTTTGAATTCAATACAAGAGGAATAGACT
1 AATTTTGAATTCAATACAAGAGGAATAGACT
75671042 A
1 A
75671043 TGTCTATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.29
Consensus pattern (31 bp):
AATTTTGAATTCAATACAAGAGGAATAGACT
Found at i:75673413 original size:27 final size:27
Alignment explanation
Indices: 75673383--75673538 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
75673373 TGCTATTCAC
* *
75673383 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
75673410 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
75673437 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
75673465 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
75673492 TCCTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
75673519 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
75673539 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:75673454 original size:55 final size:55
Alignment explanation
Indices: 75673388--75673539 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
75673378 TTCACTCAAC
* * *
75673388 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTACAT
* ** * * *
75673443 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCCTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
* *
75673497 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
75673540 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
Found at i:75681547 original size:27 final size:26
Alignment explanation
Indices: 75681508--75681685 Score: 98
Period size: 27 Copynumber: 6.6 Consensus size: 26
75681498 ATATTGAGCC
*
75681508 CGCACACTCAGTGCTATTCAATCAACT
1 CGCACACTTAGTGCTA-TCAATCAACT
* *
75681535 CGCACACTTAGTGCCA-CGTAATCAAAT
1 CGCACACTTAGTGCTATC--AATCAACT
*
75681562 CGCACACTTAGTGCTA-CATAGTTAGACT
1 CGCACACTTAGTGCTATCA-A-TCA-ACT
* ** *
75681590 CGCACACTTAGTGCCGCAT-GGTCAATT
1 CGCACACTTAGTG-C-TATCAATCAACT
**
75681617 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTATCA-A-TCAACT
*
75681644 CGCACACTTAGTGC-AACATAGTCGAA-T
1 CGCACACTTAGTGCTATCA-A-TC-AACT
75681671 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75681686 GTACAATTTA
Statistics
Matches: 121, Mismatches: 17, Indels: 25
0.74 0.10 0.15
Matches are distributed among these distances:
24 2 0.02
25 2 0.02
26 2 0.02
27 95 0.79
28 18 0.15
29 1 0.01
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTATCAATCAACT
Found at i:75681601 original size:55 final size:55
Alignment explanation
Indices: 75681508--75681685 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
75681498 ATATTGAGCC
* * *
75681508 CGCACACTCAGTGCTATTCA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTA-TCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
75681562 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
75681617 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
75681671 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75681686 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:75681647 original size:82 final size:81
Alignment explanation
Indices: 75681529--75681684 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
75681519 TGCTATTCAA
* * *
75681529 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
75681594 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
75681611 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
75681675 CACTTAGTGC
65 CACTTAGTGC
75681685 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75687841 original size:36 final size:36
Alignment explanation
Indices: 75687794--75687865 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
75687784 ACTCTATCAT
75687794 TTGAAATTGCTAGATTAGTCCTCACTTTCTTACATA
1 TTGAAATTGCTAGATTAGTCCTCACTTTCTTACATA
75687830 TTGAAATTGCTAGATTAGTCCTCACTTTCTTACATA
1 TTGAAATTGCTAGATTAGTCCTCACTTTCTTACATA
75687866 CTTTAATTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (36 bp):
TTGAAATTGCTAGATTAGTCCTCACTTTCTTACATA
Found at i:75688377 original size:22 final size:19
Alignment explanation
Indices: 75688336--75688378 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 19
75688326 ACCCAAGTGT
75688336 AATATATATATATTGTTGA
1 AATATATATATATTGTTGA
75688355 AATATAATATATATGTGTATGA
1 AATAT-ATATATAT-TGT-TGA
75688377 AA
1 AA
75688379 ACTCCAACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 8 0.38
21 3 0.14
22 5 0.24
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.42
Consensus pattern (19 bp):
AATATATATATATTGTTGA
Found at i:75692438 original size:2 final size:2
Alignment explanation
Indices: 75692431--75692464 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
75692421 TACATTACTC
75692431 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
75692465 ATTCTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:75694084 original size:39 final size:37
Alignment explanation
Indices: 75694017--75694109 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
75694007 ACCAGAATGG
* *
75694017 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
75694056 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
75694093 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
75694110 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:75695237 original size:17 final size:16
Alignment explanation
Indices: 75695205--75695238 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
75695195 TTGGCTATTC
*
75695205 TGTTTCTTTCTTCTTT
1 TGTTTCTTTATTCTTT
75695221 TGTTTCTTTTATTCTTT
1 TGTTTC-TTTATTCTTT
75695238 T
1 T
75695239 ATTTTAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (16 bp):
TGTTTCTTTATTCTTT
Found at i:75695286 original size:14 final size:14
Alignment explanation
Indices: 75695227--75695277 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
75695217 CTTTTGTTTC
*
75695227 TTTTA-TTCTTTTA
1 TTTTATTTCCTTTA
* *
75695240 TTTTAACTTACTTTA
1 TTTT-ATTTCCTTTA
*
75695255 CTTTATTTCCTTTA
1 TTTTATTTCCTTTA
75695269 TTTTATTTC
1 TTTTATTTC
75695278 TTTTGTTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 4 0.13
14 17 0.57
15 9 0.30
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTATTTCCTTTA
Found at i:75695446 original size:14 final size:17
Alignment explanation
Indices: 75695427--75695463 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
75695417 ATTTATTTCT
75695427 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
75695441 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
75695458 TAATAT
1 TAATAT
75695464 CCTTTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 1 0.05
16 4 0.20
17 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:75696118 original size:16 final size:16
Alignment explanation
Indices: 75696097--75696129 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
75696087 CATGGCCAAG
*
75696097 CCACACGCTCGTGTGC
1 CCACACGCTAGTGTGC
75696113 CCACACGCTAGTGTGC
1 CCACACGCTAGTGTGC
75696129 C
1 C
75696130 AGGCCGTGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.42, G:0.24, T:0.18
Consensus pattern (16 bp):
CCACACGCTAGTGTGC
Found at i:75699729 original size:20 final size:20
Alignment explanation
Indices: 75699704--75699769 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
75699694 AATTGTTGAA
*
75699704 TGTTTGCACATATGTGCCCC
1 TGTTTGCACATACGTGCCCC
* * *
75699724 TGTTTGTAC-TTCGGTACCCC
1 TGTTTGCACATAC-GTGCCCC
* *
75699744 TATTTGCACATACGTGCCCA
1 TGTTTGCACATACGTGCCCC
75699764 TGTTTG
1 TGTTTG
75699770 TACTTTGGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.03
20 31 0.91
21 2 0.06
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.38
Consensus pattern (20 bp):
TGTTTGCACATACGTGCCCC
Found at i:75699761 original size:40 final size:40
Alignment explanation
Indices: 75699706--75699784 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
75699696 TTGTTGAATG
* *
75699706 TTTGCACATATGTGCCCCTGTTTGTACTTCGGTACCCCTA
1 TTTGCACATACGTGCCCATGTTTGTACTTCGGTACCCCTA
*
75699746 TTTGCACATACGTGCCCATGTTTGTACTTTGGTACCCCT
1 TTTGCACATACGTGCCCATGTTTGTACTTCGGTACCCCT
75699785 GAACCCATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.15, C:0.29, G:0.18, T:0.38
Consensus pattern (40 bp):
TTTGCACATACGTGCCCATGTTTGTACTTCGGTACCCCTA
Found at i:75700927 original size:21 final size:20
Alignment explanation
Indices: 75700898--75700936 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
75700888 GTGACCCCTG
75700898 TTTCCTAGAATTTTGTGAACT
1 TTTCCTAGAATTTT-TGAACT
* *
75700919 TTTCTTAGACTTTTTGAA
1 TTTCCTAGAATTTTTGAA
75700937 TGTTTTCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.51
Consensus pattern (20 bp):
TTTCCTAGAATTTTTGAACT
Found at i:75701193 original size:73 final size:73
Alignment explanation
Indices: 75701058--75701194 Score: 175
Period size: 73 Copynumber: 1.9 Consensus size: 73
75701048 AATGATATTG
* * * *
75701058 TGTTTAGATGTTCTGATTGCACGATAATGCTCTGTTACCCTAATCTAGCAGCGAGTATAGGTTAG
1 TGTTTAGATGTTCCGATTGCACGATAATGCTCTGTAACCCTAATCTAGCAACGAGTACAGGTTAG
75701123 ATGCTCTA
66 ATGCTCTA
* * * * * * *
75701131 TGTTTAGATGTTCCGATTGCACGGTAATGTTTTGTAACCCTAATCTGGTAATGGGTACAGGTTA
1 TGTTTAGATGTTCCGATTGCACGATAATGCTCTGTAACCCTAATCTAGCAACGAGTACAGGTTA
75701195 AGGGTGTTAT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
73 53 1.00
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36
Consensus pattern (73 bp):
TGTTTAGATGTTCCGATTGCACGATAATGCTCTGTAACCCTAATCTAGCAACGAGTACAGGTTAG
ATGCTCTA
Found at i:75707508 original size:20 final size:19
Alignment explanation
Indices: 75707464--75707508 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
75707454 ATTAACCCAA
* *
75707464 TTTAAAATTATTTTGCATT
1 TTTAAAAATATGTTGCATT
*
75707483 TCTAAAAATATGTTGCAATT
1 TTTAAAAATATGTTGC-ATT
75707503 TTTAAA
1 TTTAAA
75707509 TTCTTTTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.49
Consensus pattern (19 bp):
TTTAAAAATATGTTGCATT
Found at i:75707527 original size:23 final size:23
Alignment explanation
Indices: 75707501--75707551 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
75707491 TATGTTGCAA
*
75707501 TTTTTAAATTCTTTT-TTTTGAAC
1 TTTTTAAATT-TTTTATTTTAAAC
* *
75707524 TTTTTACATTTTTTATTTTAAAT
1 TTTTTAAATTTTTTATTTTAAAC
75707547 TTTTT
1 TTTTT
75707552 TTGAAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTTAAATTTTTTATTTTAAAC
Found at i:75710169 original size:2 final size:2
Alignment explanation
Indices: 75710164--75710199 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
75710154 GCGCGCGCGC
75710164 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75710200 CAAAGCCACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75720653 original size:27 final size:26
Alignment explanation
Indices: 75720613--75720724 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
75720603 AGCATGGCTG
* * **
75720613 CCAGAACATATAATGTGACAGAGTTA
1 CCAGAACAGATAATGTGGCAGAGCCA
75720639 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
75720667 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
75720694 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
75720721 CCAG
1 CCAG
75720725 GACGTTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:75722160 original size:24 final size:24
Alignment explanation
Indices: 75722133--75722203 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
75722123 CTAGATTTCC
** *
75722133 TCCCTTATCTGCTCTTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
75722157 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
75722181 TCCCTTATCAACTTCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
75722204 CTCCTGACAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.25, C:0.35, G:0.01, T:0.38
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:75728496 original size:28 final size:27
Alignment explanation
Indices: 75728441--75728552 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
75728431 AGCATGGCTG
* *
75728441 CCAGAACAGATAA-TGTGGTAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
75728467 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
75728495 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
75728522 CCATATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
75728549 CCAG
1 CCAG
75728553 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:75728532 original size:54 final size:54
Alignment explanation
Indices: 75728441--75728552 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
75728431 AGCATGGCTG
* * *
75728441 CCAGAACAGATAATGTGGTAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
75728495 CCAGAACAGAAATATGTGGCAGAGCCACCATAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
75728549 CCAG
1 CCAG
75728553 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:75729988 original size:24 final size:24
Alignment explanation
Indices: 75729961--75730031 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
75729951 CTAGATTTCC
** *
75729961 TCCCTTATCTGCTCCTAAATTCTA
1 TCCCTTATCAACTCCTAAATCCTA
75729985 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
75730009 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
75730032 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:75730203 original size:19 final size:19
Alignment explanation
Indices: 75730179--75730216 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
75730169 GTGGCGTCAC
75730179 TTAGCCACTTTCCCACATG
1 TTAGCCACTTTCCCACATG
75730198 TTAGCCACTTTCCCACATG
1 TTAGCCACTTTCCCACATG
75730217 CTTCCTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.37, G:0.11, T:0.32
Consensus pattern (19 bp):
TTAGCCACTTTCCCACATG
Found at i:75730507 original size:46 final size:46
Alignment explanation
Indices: 75730438--75730656 Score: 253
Period size: 46 Copynumber: 4.7 Consensus size: 46
75730428 TGGCGTTACA
*
75730438 GAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCC
* * *
75730484 GAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCC
* * * * * *
75730530 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACATCC
** **
75730577 GAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCC
* *
75730623 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75730657 GCTGGTTACA
Statistics
Matches: 141, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 105 0.74
47 34 0.24
48 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCC
Found at i:75730602 original size:93 final size:93
Alignment explanation
Indices: 75730479--75730649 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
75730469 TGGATGCGAA
* * *
75730479 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
75730544 GAGTCCGAGTTCGTGAAATGTAACTAGG
66 GAGTCCGAGTTCGTGAAATGTAACTAGG
*
75730572 CATCCGAACTCGTTGAGTTGAG-TCTAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 CATCCGAACTCGTTGAGTTGAGTTC-AAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75730636 TGAGTCCGAGTTCG
65 TGAGTCCGAGTTCG
75730650 CTTATGGGCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAGG
Found at i:75734210 original size:46 final size:48
Alignment explanation
Indices: 75734113--75734289 Score: 195
Period size: 47 Copynumber: 3.8 Consensus size: 48
75734103 GGATAAGGTA
* *
75734113 CCGATGCCATGTCCTAGACATGGTCTTACACT-GACTATCATCTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATCTCGTAG
* *
75734161 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTC-AATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGTA-G
* * * * *
75734207 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATTGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGTAG
**
75734255 CCGATG-CATGTCATAGACAT-GTCTTACACTAGCTC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
75734290 ACACTCAAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 38 0.35
47 40 0.37
48 30 0.28
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGTAG
Found at i:75734274 original size:94 final size:94
Alignment explanation
Indices: 75734113--75734289 Score: 273
Period size: 94 Copynumber: 1.9 Consensus size: 94
75734103 GGATAAGGTA
* * *
75734113 CCGATGCCATGTCCTAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCACAGA
75734178 CATGTCTTACACTAGCTCTCGTCTCAATG
66 CATGTCTTACACTAGCTCTCGTCTCAATG
* * * * * *
75734207 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATTGTGGCCGATGCATGTCATAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCACAGA
75734272 CATGTCTTACACTAGCTC
66 CATGTCTTACACTAGCTC
75734290 ACACTCAAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 74 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (94 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCACAGA
CATGTCTTACACTAGCTCTCGTCTCAATG
Found at i:75738775 original size:40 final size:40
Alignment explanation
Indices: 75738729--75738902 Score: 187
Period size: 40 Copynumber: 4.3 Consensus size: 40
75738719 CACATTCAAT
* * * * *
75738729 GCCTTCGGGGACTTAACCCGGATTTA-AAACTCGCACGAAT
1 GCCTTC-GGGACTTAACCCGGAATTAGTATCTCGCACAAAG
*
75738769 GCCTTCGGGACTTAACCCGAAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
75738809 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
** *
75738849 GCCTTC-GGATCTTAGTCCGG-ATATAGTCA-CTTAGCACAAA-
1 GCCTTCGGGA-CTTAACCCGGAAT-TAGT-ATC-TCGCACAAAG
75738889 GCCTTCGGGACTTA
1 GCCTTCGGGACTTA
75738903 GCCGGACAGC
Statistics
Matches: 118, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
39 22 0.19
40 84 0.71
41 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
Found at i:75746676 original size:37 final size:39
Alignment explanation
Indices: 75746539--75746716 Score: 179
Period size: 40 Copynumber: 4.5 Consensus size: 39
75746529 CTCATTCAAT
* * * *
75746539 GCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCAC-AAA
75746579 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
75746618 GGCCTTCGGGACTTAACCCGGAATTA-TATCTCGCACAAA
1 -GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
** *
75746657 -CCTTC-GGATCTTAGTCCGG-ATATAGTCA-CTTAGCACAAA
1 GCCTTCGGGA-CTTAACCCGGAAT-TAGT-ATC-TCGCACAAA
*
75746696 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
75746717 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 8, Indels: 19
0.82 0.05 0.13
Matches are distributed among these distances:
36 5 0.04
37 15 0.12
38 2 0.02
39 27 0.22
40 68 0.57
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
Found at i:75750004 original size:30 final size:30
Alignment explanation
Indices: 75749952--75750012 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
75749942 CATATTTCAG
*
75749952 GAGCCACACGGGCTGGATACAC-GCTCATGT
1 GAGCCACACGGGCTGGACACACGGC-CATGT
* *
75749982 GAGCCACACGTGTTGGACACACGGCCATGT
1 GAGCCACACGGGCTGGACACACGGCCATGT
75750012 G
1 G
75750013 CCAACTCGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.23, C:0.30, G:0.31, T:0.16
Consensus pattern (30 bp):
GAGCCACACGGGCTGGACACACGGCCATGT
Found at i:75751153 original size:24 final size:24
Alignment explanation
Indices: 75751126--75751176 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
75751116 TTTTGTTTAA
*
75751126 TTTTTACATT-CTAATTTTTCTTT
1 TTTTTTCATTACTAATTTTTCTTT
* * *
75751149 TTTTTTCTTTATTATTTTTTCTTT
1 TTTTTTCATTACTAATTTTTCTTT
75751173 TTTT
1 TTTT
75751177 GCTTCTGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTTCATTACTAATTTTTCTTT
Found at i:75752462 original size:23 final size:23
Alignment explanation
Indices: 75752436--75752481 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
75752426 CTCTTTCGAG
* * *
75752436 AGTAAGAACAACAGACTCTAGGT
1 AGTAAGAAAAACAAAATCTAGGT
*
75752459 AGTATGAAAAACAAAATCTAGGT
1 AGTAAGAAAAACAAAATCTAGGT
75752482 TGATTGATCG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (23 bp):
AGTAAGAAAAACAAAATCTAGGT
Found at i:75754937 original size:6 final size:5
Alignment explanation
Indices: 75754916--75754962 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
75754906 AAATAAGTCT
*
75754916 AATAA AATAA CAATAA ACATAA AA-AT AA-AA AATAA AATAA AATAA AA
1 AATAA AATAA -AATAA A-ATAA AATAA AATAA AATAA AATAA AATAA AA
75754963 CAAATGGACT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
4 6 0.16
5 21 0.57
6 10 0.27
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:75754942 original size:12 final size:11
Alignment explanation
Indices: 75754916--75754962 Score: 58
Period size: 12 Copynumber: 4.1 Consensus size: 11
75754906 AAATAAGTCT
*
75754916 AATAAAATAAC
1 AATAAAATAAA
75754927 AATAAACATAAA
1 AATAAA-ATAAA
*
75754939 AATAAAAAATAA
1 AATAAAATA-AA
75754951 AATAAAATAAA
1 AATAAAATAAA
75754962 A
1 A
75754963 CAAATGGACT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
11 11 0.35
12 20 0.65
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:75754942 original size:18 final size:18
Alignment explanation
Indices: 75754927--75754962 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
75754917 ATAAAATAAC
75754927 AATAAACATAAAAATAAAA
1 AATAAA-ATAAAAATAAAA
75754946 AATAAAAT-AAAATAAAA
1 AATAAAATAAAAATAAAA
75754963 CAAATGGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 2 0.12
19 6 0.35
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (18 bp):
AATAAAATAAAAATAAAA
Found at i:75758086 original size:48 final size:48
Alignment explanation
Indices: 75758030--75758196 Score: 298
Period size: 48 Copynumber: 3.5 Consensus size: 48
75758020 ATAAGCTATT
75758030 GCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATG
1 GCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATG
75758078 GCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATG
1 GCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATG
* *
75758126 GCTAATGTGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAAGG
1 GCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATG
* *
75758174 GCTAGTGTGAAATATGTAGGAGA
1 GCTAATGTGAAATATGTATGAGA
75758197 CGTGTGGAGA
Statistics
Matches: 115, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.28
Consensus pattern (48 bp):
GCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATG
Found at i:75758493 original size:37 final size:37
Alignment explanation
Indices: 75758348--75758492 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
75758338 GGAAATATAT
*
75758348 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75758385 TCCGGGTAAAACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75758422 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
75758459 TCCGGGTAAGACCAGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
75758493 TCATCTGAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75762624 original size:49 final size:49
Alignment explanation
Indices: 75762520--75762651 Score: 156
Period size: 49 Copynumber: 2.7 Consensus size: 49
75762510 CTTGTTGTGT
* * *
75762520 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCTATAGGTGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAA
* ** * * ** *
75762569 GCCAGTGTAAGAATTTTCTGGGACATGGCATCGGCTTCGATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAA
*
75762618 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGA
75762652 TTTCAATGCG
Statistics
Matches: 66, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
49 66 1.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAA
Found at i:75771611 original size:30 final size:30
Alignment explanation
Indices: 75771558--75771615 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
75771548 CAAAGGCTAG
* *
75771558 CACATGGGCGTGTGGCTAGCCTGTGTGGCT
1 CACACGGGCGTGTGGCCAGCCTGTGTGGCT
75771588 CACACGGGCGTGTGGCCCA-CCTGTGTGG
1 CACACGGGCGTGTGG-CCAGCCTGTGTGG
75771616 AAATTCTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.10, C:0.28, G:0.40, T:0.22
Consensus pattern (30 bp):
CACACGGGCGTGTGGCCAGCCTGTGTGGCT
Found at i:75774878 original size:5 final size:5
Alignment explanation
Indices: 75774865--75774929 Score: 84
Period size: 5 Copynumber: 13.8 Consensus size: 5
75774855 TTCTTTGATT
* *
75774865 TTTAA -TTAA TTTAA TTTAA TTTCA TTTCA TTTAA TTT-A TTTAA TTT-A
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA
75774912 TTTAA TTT-A TTTAA TTTA
1 TTTAA TTTAA TTTAA TTTA
75774930 TTATCTTTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
4 16 0.30
5 38 0.70
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (5 bp):
TTTAA
Found at i:75774879 original size:9 final size:9
Alignment explanation
Indices: 75774865--75774931 Score: 98
Period size: 9 Copynumber: 7.2 Consensus size: 9
75774855 TTCTTTGATT
*
75774865 TTTAATTAA
1 TTTAATTTA
75774874 TTTAATTTAA
1 TTTAATTT-A
*
75774884 TTTCATTTCA
1 TTTAATTT-A
75774894 TTTAATTTA
1 TTTAATTTA
75774903 TTTAATTTA
1 TTTAATTTA
75774912 TTTAATTTA
1 TTTAATTTA
75774921 TTTAATTTA
1 TTTAATTTA
75774930 TT
1 TT
75774932 ATCTTTATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
9 37 0.70
10 16 0.30
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTAATTTA
Found at i:75774928 original size:14 final size:14
Alignment explanation
Indices: 75774865--75774931 Score: 84
Period size: 14 Copynumber: 4.8 Consensus size: 14
75774855 TTCTTTGATT
*
75774865 TTTAATTAATTTAA
1 TTTAATTTATTTAA
*
75774879 TTTAATTTCATTTCA
1 TTTAATTT-ATTTAA
75774894 TTTAATTTATTTAA
1 TTTAATTTATTTAA
75774908 TTT-ATTTAATTT-A
1 TTTAATTT-ATTTAA
75774921 TTTAATTTATT
1 TTTAATTTATT
75774932 ATCTTTATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
13 11 0.23
14 23 0.49
15 13 0.28
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTAATTTATTTAA
Found at i:75775131 original size:23 final size:22
Alignment explanation
Indices: 75775092--75775151 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
75775082 GGTTCTTTTC
*
75775092 TTTTTATC-TATTGATTATTATT
1 TTTTTCTCTTATT-ATTATTATT
*
75775114 ATTTTTCTCTTATTATTATTCTT
1 -TTTTTCTCTTATTATTATTATT
*
75775137 TTTATTCTATTATTA
1 TTT-TTCTCTTATTA
75775152 CTTTTTACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 3 0.09
23 25 0.78
24 4 0.12
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (22 bp):
TTTTTCTCTTATTATTATTATT
Found at i:75775147 original size:20 final size:20
Alignment explanation
Indices: 75775089--75775151 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
75775079 GTAGGTTCTT
75775089 TTCTTTTTA-TCTATTGATTA
1 TTCTTTTTATTCTATT-ATTA
* *
75775109 TTATTATTTTTCTCTTATTATTA
1 TTCTT-TTTAT-TC-TATTATTA
75775132 TTCTTTTTATTCTATTATTA
1 TTCTTTTTATTCTATTATTA
75775152 CTTTTTACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 12 0.34
21 5 0.14
22 4 0.11
23 10 0.29
24 4 0.11
ACGTcount: A:0.21, C:0.10, G:0.02, T:0.68
Consensus pattern (20 bp):
TTCTTTTTATTCTATTATTA
Found at i:75777734 original size:18 final size:19
Alignment explanation
Indices: 75777698--75777736 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
75777688 TCTTAAATTC
* *
75777698 TTTTAATTGATGCACTTGT
1 TTTTAATTCATGCAATTGT
75777717 TTTTAATTCA-GCAATTGT
1 TTTTAATTCATGCAATTGT
75777735 TT
1 TT
75777737 GTTTTTTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54
Consensus pattern (19 bp):
TTTTAATTCATGCAATTGT
Found at i:75783236 original size:22 final size:22
Alignment explanation
Indices: 75783210--75783251 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
75783200 CGTGGATTGC
*
75783210 GATACCTAAAATTGGATATCGT
1 GATACCCAAAATTGGATATCGT
* *
75783232 GATACCCAGAGTTGGATATC
1 GATACCCAAAATTGGATATC
75783252 ACGATATCCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (22 bp):
GATACCCAAAATTGGATATCGT
Found at i:75787572 original size:18 final size:18
Alignment explanation
Indices: 75787544--75787591 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
75787534 TATTATGGAA
* *
75787544 AACTGTGTTAATCTAGTG
1 AACTGTATTAATATAGTG
* *
75787562 ATCTGTATTAATATGGTG
1 AACTGTATTAATATAGTG
75787580 AACTGTATTAAT
1 AACTGTATTAAT
75787592 TTTCCAAACC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (18 bp):
AACTGTATTAATATAGTG
Found at i:75815332 original size:44 final size:43
Alignment explanation
Indices: 75815260--75815347 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 43
75815250 AACTCTGTTT
75815260 TTAGTTTACCACTTAAATCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTACCACTTAAATCTGATTAGTGTAGGTTATTTTAATA
* *
75815303 TTAGTTTCCCATTTAAACTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTACCACTTAAA-TCTGATTAGTGTAGGTTATTTTAATA
75815347 T
1 T
75815348 CATTTGACCT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 15 0.36
44 27 0.64
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (43 bp):
TTAGTTTACCACTTAAATCTGATTAGTGTAGGTTATTTTAATA
Found at i:75817048 original size:25 final size:23
Alignment explanation
Indices: 75817003--75817049 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
75816993 TTTTAGTTTT
**
75817003 TAAAAAAAATTAACTTTTAAAAG
1 TAAAAAAAATTAACTACTAAAAG
75817026 TAAAAAAAATGTAAACTACTAAAA
1 TAAAAAAAAT-T-AACTACTAAAA
75817050 TAGTCATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 10 0.50
24 1 0.05
25 9 0.45
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAAAAAATTAACTACTAAAAG
Found at i:75818853 original size:47 final size:46
Alignment explanation
Indices: 75818779--75818901 Score: 120
Period size: 46 Copynumber: 2.7 Consensus size: 46
75818769 GTGGTTTAAC
** *
75818779 CACATATCTGTTCTAACAACTTGACTGCAAATATAGTGGCTCGACCA
1 CACATATCTGTTCTGGCAACTTAACTGCAAA-ATAGTGGCTCGACCA
* * * * *
75818826 CACATATCTGTTCTGGCAGCTTAACTGCAAAATTGTGGTTTGACTA
1 CACATATCTGTTCTGGCAACTTAACTGCAAAATAGTGGCTCGACCA
* * * **
75818872 CATATATATGATCTGGCATTTTAACTGCAA
1 CACATATCTGTTCTGGCAACTTAACTGCAA
75818902 CTCTGGTGAC
Statistics
Matches: 63, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
46 36 0.57
47 27 0.43
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (46 bp):
CACATATCTGTTCTGGCAACTTAACTGCAAAATAGTGGCTCGACCA
Found at i:75820218 original size:102 final size:102
Alignment explanation
Indices: 75820100--75820300 Score: 402
Period size: 102 Copynumber: 2.0 Consensus size: 102
75820090 TATATATATA
75820100 ACTAACTCAAACAAAATTAACTATTTTGATAATTTACTCTAAAATAAATTCCTGAATGCAAATGA
1 ACTAACTCAAACAAAATTAACTATTTTGATAATTTACTCTAAAATAAATTCCTGAATGCAAATGA
75820165 ACATTTGGATATCTACAACAATAGAAAAAAGGAAGGG
66 ACATTTGGATATCTACAACAATAGAAAAAAGGAAGGG
75820202 ACTAACTCAAACAAAATTAACTATTTTGATAATTTACTCTAAAATAAATTCCTGAATGCAAATGA
1 ACTAACTCAAACAAAATTAACTATTTTGATAATTTACTCTAAAATAAATTCCTGAATGCAAATGA
75820267 ACATTTGGATATCTACAACAATAGAAAAAAGGAA
66 ACATTTGGATATCTACAACAATAGAAAAAAGGAA
75820301 AGGAAAATGA
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 99 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (102 bp):
ACTAACTCAAACAAAATTAACTATTTTGATAATTTACTCTAAAATAAATTCCTGAATGCAAATGA
ACATTTGGATATCTACAACAATAGAAAAAAGGAAGGG
Found at i:75826844 original size:11 final size:11
Alignment explanation
Indices: 75826815--75826862 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
75826805 ATATCCAAAC
*
75826815 AATAATAACAA
1 AATAATAGCAA
75826826 AATAATAGCAA
1 AATAATAGCAA
* *
75826837 CATAATAGTAA
1 AATAATAGCAA
**
75826848 AATGGTAGCAA
1 AATAATAGCAA
75826859 AATA
1 AATA
75826863 TGGAGAAAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.60, C:0.08, G:0.10, T:0.21
Consensus pattern (11 bp):
AATAATAGCAA
Found at i:75830693 original size:29 final size:29
Alignment explanation
Indices: 75830656--75830750 Score: 81
Period size: 29 Copynumber: 3.3 Consensus size: 29
75830646 TATTAATTAT
*
75830656 TTAATATTTATGAGGTCATTAGTGTCATG
1 TTAAAATTTATGAGGTCATTAGTGTCATG
* ** *
75830685 TTAAAATTTGACTATAAAT-ATTAAT-T-AT-
1 TTAAAATTT-A-T-GAGGTCATTAGTGTCATG
*
75830713 TTAATATTTATGAGGTCATTAGTGTCATG
1 TTAAAATTTATGAGGTCATTAGTGTCATG
75830742 TTAAAATTT
1 TTAAAATTT
75830751 GGTCTAGAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 14
0.66 0.15 0.19
Matches are distributed among these distances:
25 2 0.04
26 6 0.12
27 2 0.04
28 10 0.21
29 18 0.38
30 2 0.04
31 6 0.12
32 2 0.04
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (29 bp):
TTAAAATTTATGAGGTCATTAGTGTCATG
Found at i:75830727 original size:57 final size:57
Alignment explanation
Indices: 75830639--75830751 Score: 226
Period size: 57 Copynumber: 2.0 Consensus size: 57
75830629 ATGTGTGAGT
75830639 CTATAAATATTAATTATTTAATATTTATGAGGTCATTAGTGTCATGTTAAAATTTGA
1 CTATAAATATTAATTATTTAATATTTATGAGGTCATTAGTGTCATGTTAAAATTTGA
75830696 CTATAAATATTAATTATTTAATATTTATGAGGTCATTAGTGTCATGTTAAAATTTG
1 CTATAAATATTAATTATTTAATATTTATGAGGTCATTAGTGTCATGTTAAAATTTG
75830752 GTCTAGAAAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.46
Consensus pattern (57 bp):
CTATAAATATTAATTATTTAATATTTATGAGGTCATTAGTGTCATGTTAAAATTTGA
Found at i:75836462 original size:5 final size:5
Alignment explanation
Indices: 75836452--75836478 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
75836442 AAAATTTAAA
75836452 ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT
75836479 GGATGGCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:75838900 original size:13 final size:13
Alignment explanation
Indices: 75838882--75838915 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
75838872 GCATGAGTGA
75838882 CCACACGGCCTGC
1 CCACACGGCCTGC
75838895 CCACACGGCCTGC
1 CCACACGGCCTGC
75838908 CCACACGG
1 CCACACGG
75838916 GCGTGTCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.18, C:0.53, G:0.24, T:0.06
Consensus pattern (13 bp):
CCACACGGCCTGC
Found at i:75842378 original size:20 final size:20
Alignment explanation
Indices: 75842353--75842392 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
75842343 CTTACCATCC
* *
75842353 TGGAAAAACTAATGTGGTGG
1 TGGAAAAAATAATGTAGTGG
75842373 TGGAAAAAATAATGTAGTGG
1 TGGAAAAAATAATGTAGTGG
75842393 CAGATGTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.03, G:0.33, T:0.25
Consensus pattern (20 bp):
TGGAAAAAATAATGTAGTGG
Found at i:75843861 original size:29 final size:27
Alignment explanation
Indices: 75843807--75843862 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
75843797 AAAGTGATTT
*
75843807 TTGACAAAATGTCAATTAGGGATTAAA
1 TTGACAAAATGTAAATTAGGGATTAAA
* *
75843834 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGACAAAA-TGTAAATT-AGGGATTAAA
75843863 ATGTGAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 8 0.33
28 7 0.29
29 9 0.38
ACGTcount: A:0.43, C:0.04, G:0.25, T:0.29
Consensus pattern (27 bp):
TTGACAAAATGTAAATTAGGGATTAAA
Found at i:75843870 original size:29 final size:27
Alignment explanation
Indices: 75843812--75843870 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 27
75843802 GATTTTTGAC
* *
75843812 AAAATGTCAATTAGGGATTAAATTGAG
1 AAAATGTAAATTAGGGATTAAAATGAG
* *
75843839 AAAAGTGTAAATTGAGGGGTTAAAATGTG
1 AAAA-TGTAAATT-AGGGATTAAAATGAG
75843868 AAA
1 AAA
75843871 TAAATGAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 4 0.15
28 7 0.27
29 15 0.58
ACGTcount: A:0.46, C:0.02, G:0.25, T:0.27
Consensus pattern (27 bp):
AAAATGTAAATTAGGGATTAAAATGAG
Found at i:75846831 original size:8 final size:8
Alignment explanation
Indices: 75846818--75846842 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75846808 AATCCAAGCC
75846818 AAAAATTT
1 AAAAATTT
75846826 AAAAATTT
1 AAAAATTT
75846834 AAAAATTT
1 AAAAATTT
75846842 A
1 A
75846843 TTTTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AAAAATTT
Found at i:75854234 original size:20 final size:20
Alignment explanation
Indices: 75854184--75854251 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
75854174 GCATGTCCAT
* *
75854184 ATTATTGGCAACTTGTTTGC
1 ATTACTGGCAGCTTGTTTGC
75854204 ATTACTGGCAGCTTGTTTGC
1 ATTACTGGCAGCTTGTTTGC
* * *
75854224 -TCTACTGGCAGTTTATCTGC
1 AT-TACTGGCAGCTTGTTTGC
75854244 ATTACTGG
1 ATTACTGG
75854252 TGAGTTGACC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 1 0.02
20 39 0.95
21 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (20 bp):
ATTACTGGCAGCTTGTTTGC
Found at i:75858545 original size:6 final size:6
Alignment explanation
Indices: 75858527--75858560 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
75858517 TGCAAATGAA
*
75858527 TCATTT CTCATTT TCATTT TCATTT CCATTT TCA
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCA
75858561 GAAAACCACA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59
Consensus pattern (6 bp):
TCATTT
Found at i:75862334 original size:14 final size:14
Alignment explanation
Indices: 75862315--75862342 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
75862305 CTTAGTATAC
75862315 CTTACCATACAAGA
1 CTTACCATACAAGA
75862329 CTTACCATACAAGA
1 CTTACCATACAAGA
75862343 GAGCCAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (14 bp):
CTTACCATACAAGA
Found at i:75870687 original size:14 final size:14
Alignment explanation
Indices: 75870668--75870701 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
75870658 ATAACAGTTG
75870668 ACCTCAAGAATTCA
1 ACCTCAAGAATTCA
75870682 ACCTCAAGAATTCA
1 ACCTCAAGAATTCA
75870696 ACCTCA
1 ACCTCA
75870702 TATTCTGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.41, C:0.32, G:0.06, T:0.21
Consensus pattern (14 bp):
ACCTCAAGAATTCA
Found at i:75872488 original size:34 final size:34
Alignment explanation
Indices: 75872401--75872476 Score: 102
Period size: 34 Copynumber: 2.2 Consensus size: 34
75872391 GATCAATACG
* *
75872401 ATAGCAATTAATATGCTTATAATAATTCGATATA
1 ATAGCAAATAATATGCTTATAACAATTCGATATA
75872435 ATAGCAAATAATATGCTTATAACAGA-TCGAT-TCA
1 ATAGCAAATAATATGCTTATAACA-ATTCGATAT-A
75872469 ATAGCAAA
1 ATAGCAAA
75872477 AGTTATGCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 1 0.03
34 36 0.95
35 1 0.03
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.32
Consensus pattern (34 bp):
ATAGCAAATAATATGCTTATAACAATTCGATATA
Found at i:75873141 original size:22 final size:20
Alignment explanation
Indices: 75873109--75873148 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
75873099 AGAATTGCGA
75873109 TGACTTTTAGGATGAGATCC
1 TGACTTTTAGGATGAGATCC
*
75873129 TGACATTTCTAGGTTGAGAT
1 TGAC-TTT-TAGGATGAGAT
75873149 GTCTTCATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 3 0.18
22 10 0.59
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (20 bp):
TGACTTTTAGGATGAGATCC
Done.