Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 24 of 325
Found at i:9021670 original size:20 final size:21
Alignment explanation
Indices: 9021631--9021670 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
9021621 TCTTGTTATT
*
9021631 TGATTTTCTTTCTGTTTGGAC
1 TGATTTTCTTTCTATTTGGAC
*
9021652 TGATTTT-TTTTTATTTGGA
1 TGATTTTCTTTCTATTTGGA
9021671 TTTCAGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.12, C:0.07, G:0.17, T:0.62
Consensus pattern (21 bp):
TGATTTTCTTTCTATTTGGAC
Found at i:9028534 original size:21 final size:21
Alignment explanation
Indices: 9028472--9028535 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
9028462 GAATTCAAGT
*
9028472 TTTTATGTTATATAATAAAATA
1 TTTTATGTTAT-TAATAAAAAA
* ** *
9028494 TTTT-TATTACTGGATTAAAAA
1 TTTTATGTTA-TTAATAAAAAA
9028515 TTTTATGTTATTAATAAAAAA
1 TTTTATGTTATTAATAAAAAA
9028536 ACATTAGTTA
Statistics
Matches: 31, Mismatches: 9, Indels: 5
0.69 0.20 0.11
Matches are distributed among these distances:
21 22 0.71
22 9 0.29
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (21 bp):
TTTTATGTTATTAATAAAAAA
Found at i:9029254 original size:22 final size:22
Alignment explanation
Indices: 9029206--9029255 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
9029196 ATATCCAAAC
* * *
9029206 AATAACAACAAAATATTAATTA
1 AATAATAACAAAATAATAATAA
* *
9029228 TATAATAACAAAATAATAGTAA
1 AATAATAACAAAATAATAATAA
9029250 AATAAT
1 AATAAT
9029256 GAAAAAAAGT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (22 bp):
AATAATAACAAAATAATAATAA
Found at i:9034544 original size:13 final size:14
Alignment explanation
Indices: 9034526--9034554 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
9034516 TCTTCTACTC
9034526 TACTCACATG-ATT
1 TACTCACATGTATT
9034539 TACTCACATGTATT
1 TACTCACATGTATT
9034553 TA
1 TA
9034555 AGATTTCCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (14 bp):
TACTCACATGTATT
Found at i:9036731 original size:54 final size:54
Alignment explanation
Indices: 9036647--9036756 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
9036637 TCACCGCCAC
*
9036647 AAATTCCTAACTCATCTAATCTCTTTTGTGACATCATTATCTAATGAGCTAATT
1 AAATTCCTAACTCATCTAATCTCTTATGTGACATCATTATCTAATGAGCTAATT
9036701 AAATTCCTAACTCATCTAATCTCTTATGTGACATCATTATCTAATGAGCTAATT
1 AAATTCCTAACTCATCTAATCTCTTATGTGACATCATTATCTAATGAGCTAATT
9036755 AA
1 AA
9036757 TTCTTTTGGG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (54 bp):
AAATTCCTAACTCATCTAATCTCTTATGTGACATCATTATCTAATGAGCTAATT
Found at i:9043421 original size:24 final size:24
Alignment explanation
Indices: 9043389--9043438 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9043379 CTTGAGGCAG
9043389 AAAACACCTTATGCACAATGCTGC
1 AAAACACCTTATGCACAATGCTGC
9043413 AAAACACCTTATGCACAATGCTGC
1 AAAACACCTTATGCACAATGCTGC
9043437 AA
1 AA
9043439 TTGTAATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.28, G:0.12, T:0.20
Consensus pattern (24 bp):
AAAACACCTTATGCACAATGCTGC
Found at i:9045671 original size:195 final size:197
Alignment explanation
Indices: 9045339--9045730 Score: 646
Period size: 195 Copynumber: 2.0 Consensus size: 197
9045329 ATGGAGAAAC
* *
9045339 AAATTATGTTTAAAGTTAGATTTTACTCAATTTAAAATTTAATTGAAGTTTAATGTTATTATTGT
1 AAATTATGTTTAAAGTTAGATTTCACTCAATTTAAAATTTAATTGAAGTTTAATGTCATTATTGT
9045404 ATACCAAAAGGCTTTTAAAAAAACTCTAATAATATAGTAACGAGTGACAAATTTTTTTAAGGGAA
66 ATACCAAAAGGCTTTTAAAAAAACTCTAATAATATAGTAACGAGTGACAAATTTTTTTAAGGGAA
* * *
9045469 CAAATAATATTTAAGGTAGAGTTTTGTTATAGTGAAATTCTGTA-GAAT-TTTTTAGATCAATTA
131 CAAATAATATTTAAGGTAGAGTTTTATTAGAGTGAAATTCTATAGGAATCTTTTTAGATCAATTA
9045532 TT
196 TT
* *
9045534 AAATTATGTTTAGAGTTAAGATTTCACTCAATTTAGAATTTAATTGAAGTTTAATGTCATTATTG
1 AAATTATGTTTAAAGTT-AGATTTCACTCAATTTAAAATTTAATTGAAGTTTAATGTCATTATTG
* *
9045599 TATACTAAAAGGCTTTTAAAAAAA-TCTAATAATATAGTAATGAGTGACAAATTTTTTTAAGGGA
65 TATACCAAAAGGCTTTTAAAAAAACTCTAATAATATAGTAACGAGTGACAAATTTTTTTAAGGGA
* * *
9045663 ACAAATAATATTTAAGGTGGAGTTTTATTAGGGTGAAATTCTATAGGAATCTTTTTAGATTAATT
130 ACAAATAATATTTAAGGTAGAGTTTTATTAGAGTGAAATTCTATAGGAATCTTTTTAGATCAATT
9045728 ATT
195 ATT
9045731 GTAGTTAAGA
Statistics
Matches: 182, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
195 95 0.52
196 71 0.39
197 16 0.09
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.41
Consensus pattern (197 bp):
AAATTATGTTTAAAGTTAGATTTCACTCAATTTAAAATTTAATTGAAGTTTAATGTCATTATTGT
ATACCAAAAGGCTTTTAAAAAAACTCTAATAATATAGTAACGAGTGACAAATTTTTTTAAGGGAA
CAAATAATATTTAAGGTAGAGTTTTATTAGAGTGAAATTCTATAGGAATCTTTTTAGATCAATTA
TT
Found at i:9059507 original size:14 final size:14
Alignment explanation
Indices: 9059488--9059527 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
9059478 TGAATTACTA
9059488 TAAAATAAATAATT
1 TAAAATAAATAATT
* *
9059502 TAAAATTAATACTT
1 TAAAATAAATAATT
*
9059516 AAAAATAAATAA
1 TAAAATAAATAA
9059528 CTTGAATTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAAATAAATAATT
Found at i:9061987 original size:2 final size:2
Alignment explanation
Indices: 9061982--9062056 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
9061972 AAATTAAAAA
9061982 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
9062024 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
9062057 AAGTGGGTTT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9062537 original size:30 final size:31
Alignment explanation
Indices: 9062496--9062566 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 31
9062486 ATATCTAAAC
* *
9062496 AATAACAACAAAATAGTGAAAAA-AATAAGA
1 AATAACAACAAAATAGTAAAAAATAACAAGA
*
9062526 AATAGCAACAAAATAGTAAAAAATAACAAGA
1 AATAACAACAAAATAGTAAAAAATAACAAGA
*
9062557 AA-AAAAACAA
1 AATAACAACAA
9062567 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 27 0.77
31 8 0.23
ACGTcount: A:0.72, C:0.08, G:0.08, T:0.11
Consensus pattern (31 bp):
AATAACAACAAAATAGTAAAAAATAACAAGA
Found at i:9063273 original size:33 final size:33
Alignment explanation
Indices: 9063235--9063343 Score: 87
Period size: 33 Copynumber: 3.2 Consensus size: 33
9063225 AGAAAAATCA
*
9063235 ATTATACATCATTCAATTTAATACTATTTTTAT
1 ATTATACATCATTTAATTTAATACTATTTTTAT
* * * ***
9063268 ATTATA-TTGATTTTAGGGTATTAGAGGTTATTTTCT-T
1 ATTATACATCA-TTTA--AT-TTA-ATACTATTTT-TAT
9063305 ATTATACATCATTTAATTTAATACTATTTTTAT
1 ATTATACATCATTTAATTTAATACTATTTTTAT
9063338 ATTATA
1 ATTATA
9063344 TTGATTTTAG
Statistics
Matches: 55, Mismatches: 13, Indels: 16
0.65 0.15 0.19
Matches are distributed among these distances:
32 3 0.05
33 23 0.42
34 3 0.05
35 2 0.04
36 3 0.05
37 18 0.33
38 3 0.05
ACGTcount: A:0.33, C:0.07, G:0.06, T:0.53
Consensus pattern (33 bp):
ATTATACATCATTTAATTTAATACTATTTTTAT
Found at i:9063301 original size:37 final size:36
Alignment explanation
Indices: 9063259--9063380 Score: 110
Period size: 37 Copynumber: 3.4 Consensus size: 36
9063249 AATTTAATAC
9063259 TATTTTTATATTATATTGATTTTAGGGTATTAGAGGT
1 TATTTTTATATTATATTGATTTTAGGGTATTA-AGGT
* * * ***
9063296 TATTTTCT-TATTATACATCA-TTTA--AT-TTAATAC
1 TATTTT-TATATTATA-TTGATTTTAGGGTATTAAGGT
9063329 TATTTTTATATTATATTGATTTTAGGGTATTACAGGT
1 TATTTTTATATTATATTGATTTTAGGGTATTA-AGGT
*
9063366 TATTTTTTTATTATA
1 TATTTTTATATTATA
9063381 GTTTTTTTTT
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
32 3 0.05
33 18 0.28
34 3 0.05
35 2 0.03
36 3 0.05
37 32 0.50
38 3 0.05
ACGTcount: A:0.29, C:0.04, G:0.11, T:0.57
Consensus pattern (36 bp):
TATTTTTATATTATATTGATTTTAGGGTATTAAGGT
Found at i:9063309 original size:70 final size:70
Alignment explanation
Indices: 9063235--9063380 Score: 265
Period size: 70 Copynumber: 2.1 Consensus size: 70
9063225 AGAAAAATCA
*
9063235 ATTATACATCATTCAATTTAATACTATTTTTATATTATATTGATTTTAGGGTATTAGAGGTTATT
1 ATTATACATCATTCAATTTAATACTATTTTTATATTATATTGATTTTAGGGTATTACAGGTTATT
9063300 TTCTT
66 TTCTT
*
9063305 ATTATACATCATTTAATTTAATACTATTTTTATATTATATTGATTTTAGGGTATTACAGGTTATT
1 ATTATACATCATTCAATTTAATACTATTTTTATATTATATTGATTTTAGGGTATTACAGGTTATT
*
9063370 TTTTT
66 TTCTT
9063375 ATTATA
1 ATTATA
9063381 GTTTTTTTTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (70 bp):
ATTATACATCATTCAATTTAATACTATTTTTATATTATATTGATTTTAGGGTATTACAGGTTATT
TTCTT
Found at i:9067288 original size:20 final size:21
Alignment explanation
Indices: 9067237--9067288 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 21
9067227 GATAATTTTT
*
9067237 TAAAGTTAAATAATCAAAACG
1 TAAACTTAAATAATCAAAACG
* **
9067258 TGAACTT-AATAAT-AAATTG
1 TAAACTTAAATAATCAAAACG
9067277 TAAACTTAAATA
1 TAAACTTAAATA
9067289 TAATTTACTT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 10 0.40
20 10 0.40
21 5 0.20
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (21 bp):
TAAACTTAAATAATCAAAACG
Found at i:9082371 original size:15 final size:15
Alignment explanation
Indices: 9082353--9082403 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
9082343 TCACATTAAA
9082353 TATTTTTATATTATT
1 TATTTTTATATTATT
* *
9082368 TATTTTTA-ACATAAT
1 TATTTTTATA-TTATT
9082383 TATTTTTATAATTATT
1 TATTTTTAT-ATTATT
9082399 T-TTTT
1 TATTTT
9082404 ATTAGCTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
14 1 0.03
15 23 0.79
16 4 0.14
17 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (15 bp):
TATTTTTATATTATT
Found at i:9119789 original size:15 final size:15
Alignment explanation
Indices: 9119769--9119798 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
9119759 AATATTCATG
9119769 GTGAAATTAAGTAAT
1 GTGAAATTAAGTAAT
9119784 GTGAAATTAAGTAAT
1 GTGAAATTAAGTAAT
9119799 CAAGTGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (15 bp):
GTGAAATTAAGTAAT
Found at i:9124027 original size:29 final size:29
Alignment explanation
Indices: 9123972--9124027 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
9123962 AATCTACCCA
* * *
9123972 AAAATCTTGATTTTTAAGTTATCCTCACT
1 AAAATCTTGATCTTCAAGCTATCCTCACT
* *
9124001 AAAATCTTTATCTTCAAGCTATTCTCA
1 AAAATCTTGATCTTCAAGCTATCCTCA
9124028 AATGATTTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (29 bp):
AAAATCTTGATCTTCAAGCTATCCTCACT
Found at i:9129623 original size:21 final size:22
Alignment explanation
Indices: 9129592--9129632 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
9129582 CTTACCATTT
9129592 TTAAAGTTAAAA-ATCAAAATCA
1 TTAAAGTTAAAACA-CAAAATCA
9129614 TTAAA-TTAAAACACAAAAT
1 TTAAAGTTAAAACACAAAAT
9129633 TACGTCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (22 bp):
TTAAAGTTAAAACACAAAATCA
Found at i:9134833 original size:10 final size:11
Alignment explanation
Indices: 9134818--9134846 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
9134808 ACAATACATG
9134818 AAAACAGAG-C
1 AAAACAGAGCC
9134828 AAAACAGAGCC
1 AAAACAGAGCC
9134839 AAAACAGA
1 AAAACAGA
9134847 ATAAGGACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.62, C:0.21, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAACAGAGCC
Found at i:9140898 original size:12 final size:12
Alignment explanation
Indices: 9140881--9140906 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9140871 CTCTGTCACA
9140881 ATTAATATTATT
1 ATTAATATTATT
9140893 ATTAATATTATT
1 ATTAATATTATT
9140905 AT
1 AT
9140907 ATTTTATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTAATATTATT
Found at i:9145299 original size:15 final size:15
Alignment explanation
Indices: 9145274--9145310 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
9145264 AAGGTATAAT
9145274 TTTATTATTTTAATAG
1 TTTATTATTTT-ATAG
9145290 TTTA-TATTTTATAG
1 TTTATTATTTTATAG
9145304 TTT-TTAT
1 TTTATTAT
9145311 AATATTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 10 0.50
15 6 0.30
16 4 0.20
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (15 bp):
TTTATTATTTTATAG
Found at i:9145337 original size:29 final size:29
Alignment explanation
Indices: 9145295--9145369 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
9145285 AATAGTTTAT
*
9145295 ATTTTA-TAGTTTTTATAATATTAAATTAAA
1 ATTTTATTA-TTTTTA-AAAATTAAATTAAA
*
9145325 ATTTTATTATTTTTAAAAATTAAATTATA
1 ATTTTATTATTTTTAAAAATTAAATTAAA
*
9145354 ATTTTATTATTATTAA
1 ATTTTATTATTTTTAA
9145370 TTTAAAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
29 27 0.66
30 12 0.29
31 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (29 bp):
ATTTTATTATTTTTAAAAATTAAATTAAA
Found at i:9145340 original size:22 final size:22
Alignment explanation
Indices: 9145305--9145382 Score: 59
Period size: 29 Copynumber: 3.3 Consensus size: 22
9145295 ATTTTATAGT
*
9145305 TTTTA-TAATATTAAATTAAAA
1 TTTTATTATTATTAAATTAAAA
*
9145326 TTTTATTATTTTTAAAAATTAAATTATAA
1 TTTTATTATTATT--AAATT--A--A-AA
*
9145355 TTTTATTATTATTAATTTAAAA
1 TTTTATTATTATTAAATTAAAA
9145377 TTTTAT
1 TTTTAT
9145383 AAATTATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 15
0.70 0.06 0.23
Matches are distributed among these distances:
21 5 0.11
22 13 0.29
23 1 0.02
24 5 0.11
25 1 0.02
26 1 0.02
27 4 0.09
28 1 0.02
29 14 0.31
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTATTATTATTAAATTAAAA
Found at i:9147369 original size:19 final size:21
Alignment explanation
Indices: 9147327--9147382 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
9147317 TATATTAACG
9147327 TTTAATTAATTTTTAAAAATAT
1 TTTAA-TAATTTTTAAAAATAT
* *
9147349 TTTTAT-ATTTTTAAATA-AT
1 TTTAATAATTTTTAAAAATAT
9147368 TTTAATAATTTTTAA
1 TTTAATAATTTTTAA
9147383 TTTTTTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 7 0.23
20 18 0.60
21 1 0.03
22 4 0.13
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTAATAATTTTTAAAAATAT
Found at i:9147380 original size:10 final size:10
Alignment explanation
Indices: 9147327--9147383 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
9147317 TATATTAACG
9147327 TTTAATTAATT
1 TTTAA-TAATT
*
9147338 TTTAAAAATAT
1 TTTAATAAT-T
*
9147349 TTTTAT-ATT
1 TTTAATAATT
9147358 TTTAAATAA-T
1 TTT-AATAATT
9147368 TTTAATAATT
1 TTTAATAATT
9147378 TTTAAT
1 TTTAAT
9147384 TTTTTTGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
9 9 0.24
10 18 0.47
11 11 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TTTAATAATT
Found at i:9153705 original size:18 final size:19
Alignment explanation
Indices: 9153682--9153720 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
9153672 ATCGGTTTTT
*
9153682 ATATT-AAAAGAAAAAGAA
1 ATATTAAAAAAAAAAAGAA
9153700 ATATTAGAAAAAAAAAAGAA
1 ATATTA-AAAAAAAAAAGAA
9153720 A
1 A
9153721 AAAAAAGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
20 13 0.72
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.15
Consensus pattern (19 bp):
ATATTAAAAAAAAAAAGAA
Found at i:9157172 original size:28 final size:28
Alignment explanation
Indices: 9157132--9157187 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
9157122 TCACCCCTAC
* *
9157132 CCTCAACATTTACAAAATTTGTCAATTT
1 CCTCAACATTTACAAAATCTATCAATTT
9157160 CCTCAACATTTACAAAATCTATCAATTT
1 CCTCAACATTTACAAAATCTATCAATTT
9157188 ACTCCTAGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.23, G:0.02, T:0.38
Consensus pattern (28 bp):
CCTCAACATTTACAAAATCTATCAATTT
Found at i:9162890 original size:22 final size:22
Alignment explanation
Indices: 9162838--9162881 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
9162828 AAATAATATG
*
9162838 ATAATAAAATAGTAGCAACATA
1 ATAATAAAATAGTAGCAAAATA
*
9162860 ATAATAAAATAGTAGTAAAATA
1 ATAATAAAATAGTAGCAAAATA
9162882 GTGAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.61, C:0.05, G:0.09, T:0.25
Consensus pattern (22 bp):
ATAATAAAATAGTAGCAAAATA
Found at i:9163778 original size:25 final size:25
Alignment explanation
Indices: 9163750--9163802 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
9163740 GATGTAGATG
9163750 TATAACAAAATTTAAGAAAAATTAA
1 TATAACAAAATTTAAGAAAAATTAA
9163775 TATAACAAAATTTAAGAAAAATTAA
1 TATAACAAAATTTAAGAAAAATTAA
9163800 TAT
1 TAT
9163803 GATAATCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (25 bp):
TATAACAAAATTTAAGAAAAATTAA
Found at i:9166844 original size:23 final size:23
Alignment explanation
Indices: 9166818--9166911 Score: 64
Period size: 23 Copynumber: 3.9 Consensus size: 23
9166808 GATGGATTAT
*
9166818 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATTCTGGTGTGTTTGGAAGG
*
9166841 ATTATATGATACTGGTGTGTTTTGAAGG
1 A-T-TAT--T-CTGGTGTGTTTGGAAGG
* **
9166869 ATTATACTGGTGTGTTTTGGTTGG
1 ATTATTCTGGTGTG-TTTGGAAGG
* *
9166893 A-CATTTTGGTGTGTTTGGA
1 ATTATTCTGGTGTGTTTGGA
9166912 TGGAATCCGT
Statistics
Matches: 55, Mismatches: 10, Indels: 13
0.71 0.13 0.17
Matches are distributed among these distances:
22 5 0.09
23 18 0.33
24 8 0.15
25 3 0.05
26 3 0.05
27 2 0.04
28 16 0.29
ACGTcount: A:0.17, C:0.04, G:0.33, T:0.46
Consensus pattern (23 bp):
ATTATTCTGGTGTGTTTGGAAGG
Found at i:9166844 original size:28 final size:28
Alignment explanation
Indices: 9166791--9166874 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
9166781 CACTTTGTGC
*
9166791 TATTTTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
9166820 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* * *
9166848 GATACTGGTGTGTTTTGAAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
9166875 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:9167109 original size:23 final size:23
Alignment explanation
Indices: 9167079--9167165 Score: 94
Period size: 21 Copynumber: 4.0 Consensus size: 23
9167069 GCTTTACTGA
*
9167079 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
* *
9167102 TCAGGCACCTTGTGTGTCGCA--
1 TCAGGCACCTTATGTGTCGTATT
* *
9167123 GCAGGCACCTCATGTGTCG--TT
1 TCAGGCACCTTATGTGTCGTATT
9167144 TCAGGCA-CTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
9167166 CTGATCAGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
20 10 0.19
21 22 0.42
22 2 0.04
23 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:9169020 original size:28 final size:28
Alignment explanation
Indices: 9168960--9169022 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
9168950 ATGGCACGAA
* *
9168960 ATATTGAGAATGGCACTTAATGTGCGAG
1 ATATTGAGAATGACACTTAATGTGCAAG
*
9168988 ATATTGAGAATGACACTTAGTGTGCAA-
1 ATATTGAGAATGACACTTAATGTGCAAG
9169015 AGTATTGA
1 A-TATTGA
9169023 ATGATTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATATTGAGAATGACACTTAATGTGCAAG
Found at i:9169139 original size:39 final size:39
Alignment explanation
Indices: 9169095--9169307 Score: 347
Period size: 39 Copynumber: 5.5 Consensus size: 39
9169085 GACTTTATAA
*
9169095 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
* *
9169134 TGGTGTTATATCCGAGCTAAGTCCTGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
9169173 TGGTGTTATATCCGGGCTAAGT-CTCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCT-GAAGGCATTCGTGC
*
9169212 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
* * *
9169251 TGGTGTTATATCCAGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
9169290 TGGTGTTATATCCGGGCT
1 TGGTGTTATATCCGGGCT
9169308 TAAAGTCCCG
Statistics
Matches: 163, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 2 0.01
39 160 0.98
40 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.31
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
Found at i:9185724 original size:18 final size:18
Alignment explanation
Indices: 9185701--9185736 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
9185691 TGGCTTCACC
9185701 TTAAATACAATCACAGCA
1 TTAAATACAATCACAGCA
9185719 TTAAATACAATCACAGCA
1 TTAAATACAATCACAGCA
9185737 GAGTAATTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (18 bp):
TTAAATACAATCACAGCA
Found at i:9185869 original size:24 final size:24
Alignment explanation
Indices: 9185841--9185888 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
9185831 TTGTTATCAG
9185841 TAAGATGTTAAATTAAGTAAAAAT
1 TAAGATGTTAAATTAAGTAAAAAT
9185865 TAAGATGTTAAATTAAGTAAAAAT
1 TAAGATGTTAAATTAAGTAAAAAT
9185889 GGTGTACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.12, T:0.33
Consensus pattern (24 bp):
TAAGATGTTAAATTAAGTAAAAAT
Found at i:9185879 original size:13 final size:13
Alignment explanation
Indices: 9185841--9185881 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
9185831 TTGTTATCAG
9185841 TAAGATGTTAAAT
1 TAAGATGTTAAAT
**
9185854 TAAG-T-AAAAAT
1 TAAGATGTTAAAT
9185865 TAAGATGTTAAAT
1 TAAGATGTTAAAT
9185878 TAAG
1 TAAG
9185882 TAAAAATGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
11 8 0.36
12 2 0.09
13 12 0.55
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (13 bp):
TAAGATGTTAAAT
Found at i:9188685 original size:16 final size:16
Alignment explanation
Indices: 9188664--9188704 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
9188654 TAATGCCAAA
9188664 ATAAAATTAT-TAAGAT
1 ATAAAATTATATAA-AT
9188680 ATAAAATTCATATAAAT
1 ATAAAATT-ATATAAAT
9188697 -TAAAATTA
1 ATAAAATTA
9188705 CTTTTAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 1 0.04
16 15 0.65
17 4 0.17
18 3 0.13
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (16 bp):
ATAAAATTATATAAAT
Found at i:9197909 original size:42 final size:42
Alignment explanation
Indices: 9197850--9197934 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
9197840 TGTGACACTA
9197850 ACTTAATTAGGGGCTTAAATAATAGTATAGTATAAATAATAT
1 ACTTAATTAGGGGCTTAAATAATAGTATAGTATAAATAATAT
9197892 ACTTAATTAGGGGCTTAAATAATAGTATAGTATAAATAATAT
1 ACTTAATTAGGGGCTTAAATAATAGTATAGTATAAATAATAT
9197934 A
1 A
9197935 TATGATATCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.35
Consensus pattern (42 bp):
ACTTAATTAGGGGCTTAAATAATAGTATAGTATAAATAATAT
Found at i:9199124 original size:24 final size:24
Alignment explanation
Indices: 9199073--9199124 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
9199063 AGATTTAGAA
*
9199073 TTTTTGTTTACTCTTGTAGCACGG
1 TTTTTGTCTACTCTTGTAGCACGG
*
9199097 TTTTTGTCTAC-CTTGTAGCACGT
1 TTTTTGTCTACTCTTGTAGCACGG
9199120 TTTTT
1 TTTTT
9199125 AGTTTGATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 16 0.62
24 10 0.38
ACGTcount: A:0.12, C:0.17, G:0.17, T:0.54
Consensus pattern (24 bp):
TTTTTGTCTACTCTTGTAGCACGG
Found at i:9201244 original size:90 final size:90
Alignment explanation
Indices: 9200628--9201232 Score: 915
Period size: 90 Copynumber: 6.7 Consensus size: 90
9200618 GTGGACCCAT
* * * *
9200628 GGTTTGCGCATTGACTAGAGCAGGAGAAACAGTTTGCAT-GCTAGTAGCTGAGCCAGTTGAAGGG
1 GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATAG-TAGAAGCTGAGCCAGTTGAAGGG
*
9200692 ATCCCTGAAGCAGTGGAACGCTGCAA
65 ATCCCTGAAGCAGTAGAACGCTGCAA
* *
9200718 GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATACTAGAAGCTGAGCCAGTTGGAGGGA
1 GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATAGTAGAAGCTGAGCCAGTTGAAGGGA
* *
9200783 TCCCTGAAGCAGTGGAAGGCTGCAA
66 TCCCTGAAGCAGTAGAACGCTGCAA
* * * * * * *
9200808 GGTTTGTGCATTGGCTGCAGCAAGTGAAACAGTTTGCACAGTAGAAGTTGAGCTAGTTGAAGGTA
1 GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATAGTAGAAGCTGAGCCAGTTGAAGGGA
*
9200873 TCCCTGAAGTAGTAGAACGCTGCAA
66 TCCCTGAAGCAGTAGAACGCTGCAA
* * *
9200898 AGTTTGTGCATTGACTACAACAGGTGAAACAGTTTGCACAGTAGAAGCTGAGCCAGTTGAAGGGA
1 GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATAGTAGAAGCTGAGCCAGTTGAAGGGA
*
9200963 TCCCTGAAGTAGTAGAACGCTGCAA
66 TCCCTGAAGCAGTAGAACGCTGCAA
* *
9200988 GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATGGTAGAAGCTGAGCCAGTTGAAGGAA
1 GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATAGTAGAAGCTGAGCCAGTTGAAGGGA
*
9201053 TCCCTGAAGCAGTACAACGCTGCAA
66 TCCCTGAAGCAGTAGAACGCTGCAA
*
9201078 TGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATAGTAGAAGCTGAGCCAGTTGAAGGGA
1 GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATAGTAGAAGCTGAGCCAGTTGAAGGGA
9201143 TCCCTGAAGCAGTAGAACGCTGCAA
66 TCCCTGAAGCAGTAGAACGCTGCAA
** * * * *
9201168 TATTTGTGCATTAACTACAGCGGGTGAAACAGTTCGCATACTAGAAGCTGAGCCAGTTGAAGGGA
1 GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATAGTAGAAGCTGAGCCAGTTGAAGGGA
9201233 GACCAGAAGC
Statistics
Matches: 471, Mismatches: 43, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
90 471 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23
Consensus pattern (90 bp):
GGTTTGTGCATTGACTACAGCAGGTGAAACAGTTTGCATAGTAGAAGCTGAGCCAGTTGAAGGGA
TCCCTGAAGCAGTAGAACGCTGCAA
Found at i:9202582 original size:47 final size:48
Alignment explanation
Indices: 9202513--9202606 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
9202503 GTATTGAAAG
9202513 TATAATCTCTCCAAATCTC-AAAATAGTCTCCTTACCACAAGTATAGA
1 TATAATCTCTCCAAATCTCAAAAATAGTCTCCTTACCACAAGTATAGA
9202560 TATAATCTCTCCAAATCTCAAAAATAGTCTCCTTACCACAAGTATAG
1 TATAATCTCTCCAAATCTCAAAAATAGTCTCCTTACCACAAGTATAG
9202607 GTTAAATAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 19 0.41
48 27 0.59
ACGTcount: A:0.38, C:0.26, G:0.06, T:0.30
Consensus pattern (48 bp):
TATAATCTCTCCAAATCTCAAAAATAGTCTCCTTACCACAAGTATAGA
Found at i:9217064 original size:42 final size:42
Alignment explanation
Indices: 9216816--9217056 Score: 358
Period size: 42 Copynumber: 5.7 Consensus size: 42
9216806 TTAGATCATT
*
9216816 ATCTCCATCATCCTTAGCTTTCCTACTAGAAGATCTAGTACC
1 ATCTCCATCATCCTTAGCTTTCCTACTAGACGATCTAGTACC
* * *
9216858 ATCTCCATCATCCTTAGCCTTCCTACTAGATGATCTGGTACC
1 ATCTCCATCATCCTTAGCTTTCCTACTAGACGATCTAGTACC
* * *
9216900 ATCTCCATCATTCTTAGCTTTCCTACTAGAGGATCTGGTACC
1 ATCTCCATCATCCTTAGCTTTCCTACTAGACGATCTAGTACC
* * * *
9216942 ACCTCCATCATCCTCAGCTTTCCTACTAGGCGATCTAATACC
1 ATCTCCATCATCCTTAGCTTTCCTACTAGACGATCTAGTACC
*
9216984 ATCTCCGTCATCCTTAGCTTTCCTA-TCAGACGATCTAGTACC
1 ATCTCCATCATCCTTAGCTTTCCTACT-AGACGATCTAGTACC
9217026 ATCTCCATCATCCTTAGCTTTCCTACTAGAC
1 ATCTCCATCATCCTTAGCTTTCCTACTAGAC
9217057 AACCTAGTGC
Statistics
Matches: 178, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
41 1 0.01
42 176 0.99
43 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.11, T:0.33
Consensus pattern (42 bp):
ATCTCCATCATCCTTAGCTTTCCTACTAGACGATCTAGTACC
Found at i:9218003 original size:24 final size:24
Alignment explanation
Indices: 9217959--9218004 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9217949 CTATTTTATT
* *
9217959 ATTTATTTTTATTAATATTAAATA
1 ATTTATTTTAATAAATATTAAATA
*
9217983 ATTTATTTTAATAAATTTTAAA
1 ATTTATTTTAATAAATATTAAA
9218005 AATAATATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTTATTTTAATAAATATTAAATA
Found at i:9220586 original size:24 final size:24
Alignment explanation
Indices: 9220559--9220630 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
9220549 ATTTAATTTG
9220559 ATTAAGGTTTATTGGGTTTTAGTT
1 ATTAAGGTTTATTGGGTTTTAGTT
* * * *
9220583 ATTAAAG-TGATT-TGATTT-G--
1 ATTAAGGTTTATTGGGTTTTAGTT
9220602 ATTAAGGTTTATTGGGTTTTAGTT
1 ATTAAGGTTTATTGGGTTTTAGTT
9220626 ATTAA
1 ATTAA
9220631 ATAAAGTATA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
19 6 0.17
20 4 0.11
21 5 0.14
22 5 0.14
23 4 0.11
24 11 0.31
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.51
Consensus pattern (24 bp):
ATTAAGGTTTATTGGGTTTTAGTT
Found at i:9220601 original size:43 final size:43
Alignment explanation
Indices: 9220539--9220631 Score: 168
Period size: 43 Copynumber: 2.1 Consensus size: 43
9220529 ATTAACCTAA
9220539 ATTAAGAGTGATTTAATTTGATTAAGGTTTATTGGGTTTTAGTT
1 ATTAA-AGTGATTTAATTTGATTAAGGTTTATTGGGTTTTAGTT
*
9220583 ATTAAAGTGATTTGATTTGATTAAGGTTTATTGGGTTTTAGTT
1 ATTAAAGTGATTTAATTTGATTAAGGTTTATTGGGTTTTAGTT
9220626 ATTAAA
1 ATTAAA
9220632 TAAAGTATAT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 43 0.90
44 5 0.10
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (43 bp):
ATTAAAGTGATTTAATTTGATTAAGGTTTATTGGGTTTTAGTT
Found at i:9221081 original size:171 final size:171
Alignment explanation
Indices: 9220796--9221140 Score: 672
Period size: 171 Copynumber: 2.0 Consensus size: 171
9220786 AAAGAGTCAC
9220796 ATTCTCTGAATTACTTGTATGCTAATTTTGAAGATCAAAACCAGAGGATCCAAAGATTTCAATAA
1 ATTCTCTGAATTACTTGTATGCTAATTTTGAAGATCAAAACCAGAGGATCCAAAGATTTCAATAA
*
9220861 ATCATAAATTCAGGTACGCTTCCACATTTAATTTTATTACTAATAGTTTGACATGATAAATCCTT
66 ATCATAAATTCAGGTACGCTTCCACATTTAATTTTATTACTAATAGTTTGACATGATAAATCCTG
9220926 ATTTATAATTTATTAAGTTTTATACCAAATTTTATTTTACG
131 ATTTATAATTTATTAAGTTTTATACCAAATTTTATTTTACG
*
9220967 ATTCTCTGAATTACTTGTATGCTAATTTTGAAGATCAAAACCAGATGATCCAAAGATTTCAATAA
1 ATTCTCTGAATTACTTGTATGCTAATTTTGAAGATCAAAACCAGAGGATCCAAAGATTTCAATAA
9221032 ATCATAAATTCAGGTACGCTTCCACATTTAATTTTATTACTAATAGTTTGACATGATAAATCCTG
66 ATCATAAATTCAGGTACGCTTCCACATTTAATTTTATTACTAATAGTTTGACATGATAAATCCTG
9221097 ATTTATAATTTATTAAGTTTTATACCAAATTTTATTTTACG
131 ATTTATAATTTATTAAGTTTTATACCAAATTTTATTTTACG
9221138 ATT
1 ATT
9221141 GTAGCAATAA
Statistics
Matches: 172, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
171 172 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.41
Consensus pattern (171 bp):
ATTCTCTGAATTACTTGTATGCTAATTTTGAAGATCAAAACCAGAGGATCCAAAGATTTCAATAA
ATCATAAATTCAGGTACGCTTCCACATTTAATTTTATTACTAATAGTTTGACATGATAAATCCTG
ATTTATAATTTATTAAGTTTTATACCAAATTTTATTTTACG
Found at i:9222007 original size:13 final size:15
Alignment explanation
Indices: 9221977--9222008 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9221967 TCATTTCATG
9221977 CATTTCATCAATAAT
1 CATTTCATCAATAAT
9221992 CATTTCAT-AA-AAT
1 CATTTCATCAATAAT
9222005 CATT
1 CATT
9222009 ATTTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (15 bp):
CATTTCATCAATAAT
Found at i:9223738 original size:3 final size:3
Alignment explanation
Indices: 9223730--9223776 Score: 53
Period size: 3 Copynumber: 15.3 Consensus size: 3
9223720 CTATATATAT
9223730 ATA ATA AT- ATA ATA AT- ATA ATA TATA ATA TATA ATA ATA CATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA -ATA ATA ATA -ATA ATA
9223776 A
1 A
9223777 ACATATTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
2 4 0.10
3 26 0.67
4 9 0.23
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:9223739 original size:8 final size:8
Alignment explanation
Indices: 9223728--9223768 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
9223718 TACTATATAT
9223728 ATATAATA
1 ATATAATA
9223736 ATATAATA
1 ATATAATA
9223744 ATATAAT-
1 ATATAATA
9223751 ATATAAT-
1 ATATAATA
9223758 ATATAATA
1 ATATAATA
9223766 ATA
1 ATA
9223769 CATAATAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 14 0.44
8 18 0.56
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATATAATA
Found at i:9223756 original size:7 final size:7
Alignment explanation
Indices: 9223721--9223807 Score: 70
Period size: 7 Copynumber: 11.9 Consensus size: 7
9223711 TTTACGTTAC
9223721 TATAT-A
1 TATATAA
9223727 TATATAA
1 TATATAA
9223734 TAATATAA
1 T-ATATAA
9223742 TAATATAA
1 T-ATATAA
9223750 TATATAA
1 TATATAA
9223757 TATATAA
1 TATATAA
9223764 TA-ATACA
1 TATATA-A
*
9223771 TAATAAACA
1 T-ATATA-A
* *
9223780 TATTTAT
1 TATATAA
*
9223787 TATTTAA
1 TATATAA
9223794 TAATATAA
1 T-ATATAA
9223802 TATATA
1 TATATA
9223808 TTAAATTTAA
Statistics
Matches: 69, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
6 8 0.12
7 31 0.45
8 25 0.36
9 5 0.07
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (7 bp):
TATATAA
Found at i:9223762 original size:30 final size:31
Alignment explanation
Indices: 9223721--9223808 Score: 101
Period size: 30 Copynumber: 2.9 Consensus size: 31
9223711 TTTACGTTAC
9223721 TATAT-ATATATAATAATATAATAATATA-A
1 TATATAATATATAATAATATAATAATATACA
* *
9223750 TATATAATATATAATAATA-CATAATAAACA
1 TATATAATATATAATAATATAATAATATACA
* * *
9223780 TATTTATTATTTAATAATATAATATATAT
1 TATATAATATATAATAATATAATA-ATAT
9223809 TAAATTTAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
29 12 0.25
30 30 0.62
31 3 0.06
32 3 0.06
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (31 bp):
TATATAATATATAATAATATAATAATATACA
Found at i:9223768 original size:10 final size:10
Alignment explanation
Indices: 9223722--9223776 Score: 65
Period size: 10 Copynumber: 5.1 Consensus size: 10
9223712 TTACGTTACT
9223722 ATATATATATA
1 ATATATA-ATA
9223733 ATAATATAATA
1 AT-ATATAATA
9223744 ATATAATATATA
1 ATAT-ATA-ATA
9223756 ATATATAATA
1 ATATATAATA
*
9223766 ATACATAATA
1 ATATATAATA
9223776 A
1 A
9223777 ACATATTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
10 15 0.38
11 13 0.32
12 12 0.30
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (10 bp):
ATATATAATA
Found at i:9224218 original size:14 final size:14
Alignment explanation
Indices: 9224194--9224230 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
9224184 CACTATTTTA
*
9224194 ATTTATTTAATAAT
1 ATTTATATAATAAT
*
9224208 ATTTTTATAATAAT
1 ATTTATATAATAAT
9224222 ATTTATATA
1 ATTTATATA
9224231 TCTAAGAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTATATAATAAT
Found at i:9230742 original size:11 final size:10
Alignment explanation
Indices: 9230712--9230753 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
9230702 TAAAATTTTT
9230712 AAATTTTAAA
1 AAATTTTAAA
*
9230722 AAA-TTCAAA
1 AAATTTTAAA
9230731 AAAGTTTTAAA
1 AAA-TTTTAAA
9230742 AATATTTTAAA
1 AA-ATTTTAAA
9230753 A
1 A
9230754 TAAAAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 8 0.30
10 3 0.11
11 15 0.56
12 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (10 bp):
AAATTTTAAA
Found at i:9230760 original size:18 final size:18
Alignment explanation
Indices: 9230739--9230801 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 18
9230729 AAAAAGTTTT
9230739 AAAAATATTTTAAAATAA
1 AAAAATATTTTAAAATAA
*
9230757 AAAAA-A--TTAAAATTA
1 AAAAATATTTTAAAATAA
* * *
9230772 TAAAATAGTTATAAATTATA
1 AAAAATA-TTTTAAAATA-A
9230792 AAAAATATTT
1 AAAAATATTT
9230802 CTTTAACATT
Statistics
Matches: 33, Mismatches: 7, Indels: 9
0.67 0.14 0.18
Matches are distributed among these distances:
15 12 0.36
16 1 0.03
17 1 0.03
18 5 0.15
19 7 0.21
20 7 0.21
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AAAAATATTTTAAAATAA
Found at i:9230963 original size:24 final size:26
Alignment explanation
Indices: 9230912--9230963 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 26
9230902 TCTATTTTAA
* *
9230912 AATAATATAACAACAAATACAAATTT
1 AATAATATAACAACAAATAAAAAATT
*
9230938 AATAAT-TAA-AATAAATAAAAAATT
1 AATAATATAACAACAAATAAAAAATT
9230962 AA
1 AA
9230964 ATAAAAGACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 14 0.61
25 3 0.13
26 6 0.26
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (26 bp):
AATAATATAACAACAAATAAAAAATT
Found at i:9233100 original size:18 final size:19
Alignment explanation
Indices: 9233068--9233103 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
9233058 AATGTTTATT
*
9233068 TACTTAATTTTTTAATTTA
1 TACTTAATTTATTAATTTA
9233087 TACTT-ATTTATTAATTT
1 TACTTAATTTATTAATTT
9233104 TTTAAAATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.64
Consensus pattern (19 bp):
TACTTAATTTATTAATTTA
Found at i:9234766 original size:46 final size:46
Alignment explanation
Indices: 9234698--9234785 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 46
9234688 AAAATTAAAT
* * *
9234698 TTTATATTTTTATGATAGTTAAAATA-TAATTTTATTTTTTTAGTAG
1 TTTATATTTTTATAATAGTTAAAAAATTAA-ATTATTTTTTTAGTAG
9234744 TTTATATTTTTATAATTA-TTAAAAAATTAAATTATTTTTTTA
1 TTTATATTTTTATAA-TAGTTAAAAAATTAAATTATTTTTTTA
9234786 TATTTTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
46 32 0.86
47 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (46 bp):
TTTATATTTTTATAATAGTTAAAAAATTAAATTATTTTTTTAGTAG
Found at i:9234797 original size:29 final size:30
Alignment explanation
Indices: 9234745--9234824 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 30
9234735 TTTTAGTAGT
* *
9234745 TTATATTTTTATAATTATTAAAAAATTAAA
1 TTATTTTTTTATAATTATTAAAAAATAAAA
* * *
9234775 TTATTTTTTTAT-ATTTTTTAAAAGTAAAA
1 TTATTTTTTTATAATTATTAAAAAATAAAA
* * *
9234804 ATATTATTTTATCATTATTAA
1 TTATTTTTTTATAATTATTAA
9234825 GCCCCTACTG
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 23 0.57
30 17 0.43
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (30 bp):
TTATTTTTTTATAATTATTAAAAAATAAAA
Found at i:9242755 original size:53 final size:53
Alignment explanation
Indices: 9242674--9242824 Score: 196
Period size: 53 Copynumber: 2.8 Consensus size: 53
9242664 CTTACACGGT
* *
9242674 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
9242729 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** * * *
9242782 TCACATTGCACCGATGCTATAGCCCAGCTACGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
9242825 GCACACTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 79 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:9254752 original size:46 final size:46
Alignment explanation
Indices: 9254648--9254752 Score: 174
Period size: 46 Copynumber: 2.3 Consensus size: 46
9254638 TGACAAGTGG
* ** *
9254648 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAT
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAAAC
9254694 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAAAC
9254740 AAAGTGATAAGTG
1 AAAGTGATAAGTG
9254753 GCTACACTTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAAAC
Found at i:9254762 original size:37 final size:37
Alignment explanation
Indices: 9254715--9254935 Score: 374
Period size: 37 Copynumber: 6.0 Consensus size: 37
9254705 TGATAGCTTC
*
9254715 GGCTATACTTATCTGATCAAGAAACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
*
9254752 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
*
9254789 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
9254826 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
*
9254863 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
**
9254900 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
9254935 G
1 G
9254936 ATCATACGTA
Statistics
Matches: 175, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 160 0.91
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
Found at i:9275709 original size:24 final size:24
Alignment explanation
Indices: 9275663--9275730 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
9275653 GCGGATTTCC
*
9275663 ACCCAAACACA-CCAGAATATCCA
1 ACCCAAACACACCCGGAATATCCA
9275686 ACCCAAACACACCCGGAATATCCA
1 ACCCAAACACACCCGGAATATCCA
9275710 ACCCAAACACACCCGGAATAT
1 ACCCAAACACACCCGGAATAT
9275731 TGTAAATCCT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 11 0.26
24 32 0.74
ACGTcount: A:0.44, C:0.40, G:0.07, T:0.09
Consensus pattern (24 bp):
ACCCAAACACACCCGGAATATCCA
Found at i:9277260 original size:5 final size:5
Alignment explanation
Indices: 9277250--9277339 Score: 162
Period size: 5 Copynumber: 18.0 Consensus size: 5
9277240 TTTCTTTTAT
* *
9277250 ATATA ATATA ATATA ACATA ATATA ATATA ACATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
9277300 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
9277340 CTTAATTATT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 81 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:9279371 original size:46 final size:46
Alignment explanation
Indices: 9279304--9279473 Score: 215
Period size: 46 Copynumber: 3.7 Consensus size: 46
9279294 TGTAACCCGC
*
9279304 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
9279350 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCACAT
* **
9279400 -C-TCAA--GAACTCGGACTCAACTCAACGAGTTCGAACATTCACAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
9279443 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
9279474 TTCAGATGCT
Statistics
Matches: 109, Mismatches: 4, Indels: 22
0.81 0.03 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 4 0.04
45 1 0.01
46 59 0.54
47 26 0.24
48 2 0.02
49 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
Found at i:9279425 original size:93 final size:93
Alignment explanation
Indices: 9279312--9279482 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
9279302 GCCCATAAGT
** *
9279312 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
9279377 CGAGCTCGGATGCCTAGTTACATCTCAA
66 CGAGCTCAGATGCCTAGTTACATCTCAA
*
9279405 GAACTCGGACTCAACTCAACGAGTTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
9279470 CGAGTTCAGATGC
66 CGAGCTCAGATGC
9279483 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCAA
Found at i:9281815 original size:50 final size:50
Alignment explanation
Indices: 9281691--9281939 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
9281681 GATAATAACA
* * ** * *
9281691 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
9281742 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
9281792 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
9281842 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
9281897 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
9281940 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:9281869 original size:100 final size:104
Alignment explanation
Indices: 9281690--9281939 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
9281680 TGATAATAAC
**
9281690 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
9281755 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
9281792 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
9281855 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
9281897 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
9281940 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:9282049 original size:13 final size:13
Alignment explanation
Indices: 9282033--9282064 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9282023 TGCTTGATCA
*
9282033 TCATCAAATAAAT
1 TCATAAAATAAAT
9282046 TCATAAAATAAAT
1 TCATAAAATAAAT
9282059 TCATAA
1 TCATAA
9282065 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:9282310 original size:30 final size:30
Alignment explanation
Indices: 9282274--9282331 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
9282264 CCTCGACTCT
*
9282274 AACTTTTTCAAAATTACAATTTTACCCCTA
1 AACTTTTACAAAATTACAATTTTACCCCTA
* * *
9282304 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTACCCC
9282332 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTACCCCTA
Found at i:9284429 original size:16 final size:16
Alignment explanation
Indices: 9284408--9284439 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
9284398 TAATGTGTTT
9284408 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
9284424 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
9284440 ATGCAGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.25, T:0.50
Consensus pattern (16 bp):
TGCTGCTGTTGTTTAA
Found at i:9284621 original size:45 final size:45
Alignment explanation
Indices: 9284553--9284816 Score: 420
Period size: 45 Copynumber: 5.9 Consensus size: 45
9284543 AAGAGGTGGA
** * * *
9284553 CAACATCATGCATAATTTGTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
9284598 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
9284643 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
9284688 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
9284733 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
9284778 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
9284817 CCATGGCCGA
Statistics
Matches: 205, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 205 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:9288473 original size:17 final size:16
Alignment explanation
Indices: 9288434--9288495 Score: 54
Period size: 18 Copynumber: 3.7 Consensus size: 16
9288424 ATTTTTTTTC
*
9288434 AAAATATATCTTATC-T
1 AAAA-ATATTTTATCTT
*
9288450 AATAATACTTTTATCTT
1 AAAAATA-TTTTATCTT
*
9288467 AAAAATATTTTTTATCTC
1 AAAAATA--TTTTATCTT
9288485 AAAAATATTTT
1 AAAAATATTTT
9288496 TTAGAAGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
15 3 0.08
16 13 0.34
17 7 0.18
18 15 0.39
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AAAAATATTTTATCTT
Found at i:9288481 original size:18 final size:18
Alignment explanation
Indices: 9288458--9288498 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
9288448 CTAATAATAC
*
9288458 TTTTATCTTAAAAATATT
1 TTTTATCTCAAAAATATT
9288476 TTTTATCTCAAAAATATT
1 TTTTATCTCAAAAATATT
9288494 TTTTA
1 TTTTA
9288499 GAAGCAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTATCTCAAAAATATT
Found at i:9288496 original size:17 final size:16
Alignment explanation
Indices: 9288434--9288496 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 16
9288424 ATTTTTTTTC
*
9288434 AAAATATATCTTATCTA
1 AAAATAT-TTTTATCTA
* *
9288451 ATAATACTTTTATCTTA
1 AAAATATTTTTATC-TA
9288468 AAAATATTTTTTATCTCA
1 AAAATA-TTTTTATCT-A
9288486 AAAATATTTTT
1 AAAATATTTTT
9288497 TAGAAGCAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 6 0.16
17 18 0.47
18 14 0.37
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (16 bp):
AAAATATTTTTATCTA
Found at i:9291251 original size:18 final size:20
Alignment explanation
Indices: 9291230--9291274 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
9291220 TATCAAGTTA
9291230 ATAATT-TGATATAA-ATAT
1 ATAATTATGATATAATATAT
* *
9291248 ATAATTATTATTTAATATAT
1 ATAATTATGATATAATATAT
9291268 ATAATTA
1 ATAATTA
9291275 ATATAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 6 0.26
19 6 0.26
20 11 0.48
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
ATAATTATGATATAATATAT
Found at i:9291281 original size:18 final size:19
Alignment explanation
Indices: 9291238--9291281 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
9291228 TAATAATTTG
9291238 ATATAA-ATATATAATTATT
1 ATATAATATATATAATTA-T
*
9291257 ATTTAATATATATAATTA-
1 ATATAATATATATAATTAT
9291275 ATATAAT
1 ATATAAT
9291282 TATGTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 6 0.27
19 5 0.23
20 11 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATAATATATATAATTAT
Found at i:9297740 original size:15 final size:17
Alignment explanation
Indices: 9297704--9297742 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
9297694 TTGATAAAAC
9297704 TAAAATATAACATTACT
1 TAAAATATAACATTACT
*
9297721 TAAAATTTAA-ATTA-T
1 TAAAATATAACATTACT
9297736 TAAAATA
1 TAAAATA
9297743 ATTTATCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 7 0.35
16 4 0.20
17 9 0.45
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAAATATAACATTACT
Found at i:9309197 original size:22 final size:21
Alignment explanation
Indices: 9309150--9309198 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
9309140 TTGTCATATG
* **
9309150 AATTTCTTTTAAATAATTGTA
1 AATTTTTTTTAAATAATTCAA
*
9309171 TATTTTTTTTAAATAAATTCAA
1 AATTTTTTTTAAAT-AATTCAA
9309193 AATTTT
1 AATTTT
9309199 AAAAATATAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (21 bp):
AATTTTTTTTAAATAATTCAA
Found at i:9309218 original size:18 final size:18
Alignment explanation
Indices: 9309197--9309231 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
9309187 ATTCAAAATT
9309197 TTAAAA-ATATATACAAAC
1 TTAAAAGAT-TATACAAAC
9309215 TTAAAAGATTATACAAA
1 TTAAAAGATTATACAAA
9309232 ATTATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.29
Consensus pattern (18 bp):
TTAAAAGATTATACAAAC
Found at i:9314414 original size:7 final size:7
Alignment explanation
Indices: 9314402--9314426 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9314392 AAAAATACTT
9314402 TATATAA
1 TATATAA
9314409 TATATAA
1 TATATAA
9314416 TATATAA
1 TATATAA
9314423 TATA
1 TATA
9314427 ATATCTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
TATATAA
Found at i:9328726 original size:38 final size:38
Alignment explanation
Indices: 9328675--9328750 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
9328665 TAATTGATTT
9328675 GCCATGGAAAAGATGGAATCATAGAGAAATCATACATA
1 GCCATGGAAAAGATGGAATCATAGAGAAATCATACATA
9328713 GCCATGGAAAAGATGGAATCATAGAGAAATCATACATA
1 GCCATGGAAAAGATGGAATCATAGAGAAATCATACATA
9328751 AGTGAGTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.18
Consensus pattern (38 bp):
GCCATGGAAAAGATGGAATCATAGAGAAATCATACATA
Found at i:9333605 original size:21 final size:20
Alignment explanation
Indices: 9333565--9333620 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 20
9333555 AAGGATATAA
*
9333565 ATTTTGGAA-TTTTTATAAAT
1 ATTTT-GAATTTTTTAAAAAT
9333585 ATTTTGAATTTTTTGAAAAAT
1 ATTTTGAATTTTTT-AAAAAT
*
9333606 TTTTTGAAATTTTTT
1 ATTTTG-AATTTTTT
9333621 TTGTAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.10
20 10 0.32
21 10 0.32
22 8 0.26
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (20 bp):
ATTTTGAATTTTTTAAAAAT
Found at i:9333607 original size:19 final size:20
Alignment explanation
Indices: 9333563--9333608 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
9333553 AAAAGGATAT
9333563 AAATTTTGGAATTTTTATAA
1 AAATTTTGGAATTTTTATAA
*
9333583 ATATTTT-GAATTTTT-TGAA
1 AAATTTTGGAATTTTTAT-AA
9333602 AAATTTT
1 AAATTTT
9333609 TTGAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.04
19 16 0.70
20 6 0.26
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (20 bp):
AAATTTTGGAATTTTTATAA
Found at i:9333615 original size:10 final size:10
Alignment explanation
Indices: 9333566--9333620 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
9333556 AGGATATAAA
*
9333566 TTTTGGAATT
1 TTTTGAAATT
*
9333576 TTTAT-AAATA
1 TTT-TGAAATT
9333586 TTTTG-AATT
1 TTTTGAAATT
9333595 TTTTGAAAAATT
1 TTTTG--AAATT
9333607 TTTTGAAATT
1 TTTTGAAATT
9333617 TTTT
1 TTTT
9333621 TTGTAAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
9 9 0.24
10 18 0.49
11 1 0.03
12 9 0.24
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.60
Consensus pattern (10 bp):
TTTTGAAATT
Found at i:9333620 original size:12 final size:12
Alignment explanation
Indices: 9333592--9333632 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
9333582 AATATTTTGA
*
9333592 ATTTTTTGAAAA
1 ATTTTTTGAAAT
9333604 ATTTTTTGAAAT
1 ATTTTTTGAAAT
*
9333616 TTTTTTTGTAAAT
1 ATTTTTTG-AAAT
9333629 ATTT
1 ATTT
9333633 CAAAATTGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 18 0.72
13 7 0.28
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (12 bp):
ATTTTTTGAAAT
Found at i:9333695 original size:18 final size:18
Alignment explanation
Indices: 9333672--9333710 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
9333662 ACACCAAACT
*
9333672 ATTATTCAAGTTATTTGA
1 ATTATTCAAGTTATTTAA
9333690 ATTATTCAAGTTATTTAA
1 ATTATTCAAGTTATTTAA
9333708 ATT
1 ATT
9333711 GTAAAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (18 bp):
ATTATTCAAGTTATTTAA
Found at i:9336544 original size:23 final size:23
Alignment explanation
Indices: 9336485--9336544 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
9336475 ATATATATAC
9336485 TAAAT-AA-AATAA-TAAAATAA
1 TAAATAAATAATAATTAAAATAA
* * *
9336505 T-AATAAATATCTTATTAAAATAT
1 TAAATAAATA-ATAATTAAAATAA
9336528 TAAATAAATAATAATTA
1 TAAATAAATAATAATTA
9336545 TCTAATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 1 0.03
22 2 0.07
23 13 0.43
24 8 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATAAATAATAATTAAAATAA
Found at i:9336567 original size:34 final size:31
Alignment explanation
Indices: 9336479--9336555 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
9336469 ACACATATAT
*
9336479 ATATACTAAATAAAATAATAAAAT-AATAATAA
1 ATAT-CTAATTAAAAT-ATAAAATAAATAATAA
* *
9336511 ATATCTTATTAAAATATTAAATAAATAATAA
1 ATATCTAATTAAAATATAAAATAAATAATAA
*
9336542 TTATCTAATTAAAA
1 ATATCTAATTAAAA
9336556 AACTATAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
30 6 0.15
31 29 0.74
32 4 0.10
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (31 bp):
ATATCTAATTAAAATATAAAATAAATAATAA
Found at i:9339301 original size:14 final size:13
Alignment explanation
Indices: 9339280--9339309 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
9339270 ATAAAATATT
9339280 TTTCGGAAAATGA
1 TTTCGGAAAATGA
9339293 TTTCTGGAAAATGA
1 TTTC-GGAAAATGA
9339307 TTT
1 TTT
9339310 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (13 bp):
TTTCGGAAAATGA
Found at i:9339325 original size:19 final size:20
Alignment explanation
Indices: 9339293--9339336 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
9339283 CGGAAAATGA
9339293 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
*
9339313 TTTCTGG-AAATGATTTATT
1 TTTCTGGAAAATGATTTACT
9339332 TTTCT
1 TTTCT
9339337 AGTTTTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.25, C:0.09, G:0.14, T:0.52
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:9341473 original size:24 final size:24
Alignment explanation
Indices: 9341338--9341499 Score: 107
Period size: 24 Copynumber: 6.8 Consensus size: 24
9341328 ATCAACCGAT
* **
9341338 TTCGCACACATAGTGCTAAACAAA
1 TTCGCACACATAGTGCCATTCAAA
* * *
9341362 TTCGTACACATAGTGCCATGCTACA
1 TTCGCACACATAGTGCCATTC-AAA
* *
9341387 CT-GCACACATAGTGCC-TTGAAGA
1 TTCGCACACATAGTGCCATTCAA-A
* * ** * * *
9341410 TTCACTCATGTATTGACATCCAAA
1 TTCGCACACATAGTGCCATTCAAA
9341434 -TCAGCACACATAGTGCCATTC-AA
1 TTC-GCACACATAGTGCCATTCAAA
*
9341457 TTCCGCATACATAGTGCCATTCAAA
1 TT-CGCACACATAGTGCCATTCAAA
*
9341482 TTCGCACACTTAGTGCCA
1 TTCGCACACATAGTGCCA
9341500 ATGTTGACCC
Statistics
Matches: 101, Mismatches: 29, Indels: 16
0.69 0.20 0.11
Matches are distributed among these distances:
22 1 0.01
23 7 0.07
24 82 0.81
25 11 0.11
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (24 bp):
TTCGCACACATAGTGCCATTCAAA
Found at i:9343773 original size:32 final size:32
Alignment explanation
Indices: 9343732--9343809 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
9343722 TCAATCATTG
*
9343732 CAATATCCAACAAGCTT-AAAACATAACAAATT
1 CAATATCCAACAA-ATTCAAAACATAACAAATT
* * * *
9343764 CAATATCCAATAAATTCAAGACATAATAATTT
1 CAATATCCAACAAATTCAAAACATAACAAATT
*
9343796 CAAAATCCAACAAA
1 CAATATCCAACAAA
9343810 CTAGAATTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 2 0.05
32 36 0.95
ACGTcount: A:0.54, C:0.21, G:0.03, T:0.23
Consensus pattern (32 bp):
CAATATCCAACAAATTCAAAACATAACAAATT
Found at i:9348845 original size:25 final size:25
Alignment explanation
Indices: 9348798--9348845 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
9348788 CGACTAGAAG
*
9348798 ATGAAGAAAGGAAGAAGGAAAAGGA
1 ATGAAGAAAGGAAGAAGAAAAAGGA
*
9348823 ATGAAGAACGGAA-AAGAAGAAAG
1 ATGAAGAAAGGAAGAAGAA-AAAG
9348846 ACTTAACTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.60, C:0.02, G:0.33, T:0.04
Consensus pattern (25 bp):
ATGAAGAAAGGAAGAAGAAAAAGGA
Found at i:9350317 original size:479 final size:479
Alignment explanation
Indices: 9349411--9350318 Score: 1636
Period size: 479 Copynumber: 1.9 Consensus size: 479
9349401 AAGCTCATGT
* * *
9349411 TGTAACTCCCCGTACCCGAGACCGTTGCCGGAGTCGAACACGAGTTGTTAACGGACTTAATTCAT
1 TGTAACGCCCCGTACCCGAGACCGTTGCCGGAGTCGAACACGAGGTGTTAACAGACTTAATTCAT
*
9349476 TACTTAAACAGCTCATACAATTCATTTTAAAATTTCCAGACAAGCTGGTTAACTGCATCACAGTC
66 TACTTAAACAGCTCATACAATTCATTTTAAAATTTCCAGACAAGCTGGCTAACTGCATCACAGTC
*
9349541 GCTTTAAAAATCATATCTCGAGTTCCGAAACTTGAAATCCAATTCCGTAAATTTTTCCTGAAACT
131 GCTTTAAAAATCATATCTCGAGTTCCGAAACTCGAAATCCAATTCCGTAAATTTTTCCTGAAACT
9349606 AGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGAAAGTTTTGCAAATTATTCGATTTAGT
196 AGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGAAAGTTTTGCAAATTATTCGATTTAGT
9349671 CCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACACAATCATGCA
261 CCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACACAATCATGCA
* *
9349736 ATTATATCATAGACCATAAAATAATCATAAAATAATTATTTCTATCTCGGATTTTGTGGTCACAA
326 ATCATATCATAGACCATAAAATAATCATAAAATAATTATTTATATCTCGGATTTTGTGGTCACAA
*
9349801 AATCACTATTCCGACTAGGCCCAAAATCAGAATATTACAACTCTCCCCTCCTTCAGGGATTTTCG
391 AACCACTATTCCGACTAGGCCCAAAATCAGAATATTACAACTCTCCCCTCCTTCAGGGATTTTCG
9349866 TCCCCGAAAATCTTACCAGCTAAA
456 TCCCCGAAAATCTTACCAGCTAAA
** *
9349890 TGTAACGCCCCGTACCCGAGACCGTTTTCGGAGTTGAACACGAGGTGTTAACAGACTTAATTCAT
1 TGTAACGCCCCGTACCCGAGACCGTTGCCGGAGTCGAACACGAGGTGTTAACAGACTTAATTCAT
*
9349955 TACTTAAACAGCTCATACAATTCATTTTAAAATTTCCAGACAAGTTGGCTAACTGCATCACAGTC
66 TACTTAAACAGCTCATACAATTCATTTTAAAATTTCCAGACAAGCTGGCTAACTGCATCACAGTC
*
9350020 GCTTTAAAAATCATATCTCGAGTTTCGAAACTCGAAATCCAATTCCGTAAATTTTTCCTGAAACT
131 GCTTTAAAAATCATATCTCGAGTTCCGAAACTCGAAATCCAATTCCGTAAATTTTTCCTGAAACT
* *
9350085 AGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGCAAGTTTTTCAAATTATTCGATTTAGT
196 AGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGAAAGTTTTGCAAATTATTCGATTTAGT
*
9350150 CCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACGCAATCATGCA
261 CCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACACAATCATGCA
* *
9350215 ATCATATCATAGACCTTAAAATAATCATAAAATAATTATTTATATCTCGGATTTTGTGGTCACGA
326 ATCATATCATAGACCATAAAATAATCATAAAATAATTATTTATATCTCGGATTTTGTGGTCACAA
* *
9350280 AACCACTATTTCGACTAGGCCCAAAATCAGGATATTACA
391 AACCACTATTCCGACTAGGCCCAAAATCAGAATATTACA
9350319 CATGTGAACT
Statistics
Matches: 409, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
479 409 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (479 bp):
TGTAACGCCCCGTACCCGAGACCGTTGCCGGAGTCGAACACGAGGTGTTAACAGACTTAATTCAT
TACTTAAACAGCTCATACAATTCATTTTAAAATTTCCAGACAAGCTGGCTAACTGCATCACAGTC
GCTTTAAAAATCATATCTCGAGTTCCGAAACTCGAAATCCAATTCCGTAAATTTTTCCTGAAACT
AGACTCATATATCTATCTAGTAATTTTTTTCTAGAATGAAAGTTTTGCAAATTATTCGATTTAGT
CCCTAATTTCAATTTAAGCACTTTATGCATAAAATTCCTTCACGAAATTTTCACACAATCATGCA
ATCATATCATAGACCATAAAATAATCATAAAATAATTATTTATATCTCGGATTTTGTGGTCACAA
AACCACTATTCCGACTAGGCCCAAAATCAGAATATTACAACTCTCCCCTCCTTCAGGGATTTTCG
TCCCCGAAAATCTTACCAGCTAAA
Found at i:9351787 original size:124 final size:124
Alignment explanation
Indices: 9351630--9351878 Score: 480
Period size: 124 Copynumber: 2.0 Consensus size: 124
9351620 CGCTTGCCTT
*
9351630 AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTGTATA
1 AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTCTATA
9351695 TCGGGAAGTTCTTGCAAGCCCAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCGCA
66 TCGGGAAGTTCTTGCAAGCCCAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCGCA
9351754 AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTCTATA
1 AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTCTATA
*
9351819 TCGGGAAGTTCTTGCAAGCCTAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCGCA
66 TCGGGAAGTTCTTGCAAGCCCAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCGCA
9351878 A
1 A
9351879 CACATGCAGG
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 123 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (124 bp):
AGTTGAATTTTTAGTTAGTTTCAGGACCATCAACTAAGTAACAGGAAACTCATACGAGCTCTATA
TCGGGAAGTTCTTGCAAGCCCAATATCAGGAAGCTCAAGAGAGTTGTGGTGTATCCGCA
Found at i:9353971 original size:3 final size:3
Alignment explanation
Indices: 9353963--9354008 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
9353953 TTAGATGCTC
*
9353963 TCT TCT TCT TCT TCT CCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
9354009 TTTTCCTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:9359428 original size:21 final size:21
Alignment explanation
Indices: 9359405--9359453 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
9359395 TTGAATTTCT
*
9359405 TTTTTTTTTAATA-TTCA-TA
1 TTTTTTTTTATTATTTCATTA
9359424 TTTTTTTTTATTATTTCATTA
1 TTTTTTTTTATTATTTCATTA
*
9359445 TATTTTTTT
1 TTTTTTTTT
9359454 GACCCCTGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 12 0.46
20 4 0.15
21 10 0.38
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTTTTTATTATTTCATTA
Found at i:9359594 original size:20 final size:19
Alignment explanation
Indices: 9359571--9359631 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
9359561 TGTATTGACC
*
9359571 ATATTAAAATATTGTAAAAA
1 ATATTAAAA-ATAGTAAAAA
9359591 ATATTAAAAATAGTAAAAA
1 ATATTAAAAATAGTAAAAA
*
9359610 TTATTTAAAAATA-TACAAAA
1 ATA-TTAAAAATAGTA-AAAA
9359630 AT
1 AT
9359632 TGTAAAGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 13 0.36
20 23 0.64
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (19 bp):
ATATTAAAAATAGTAAAAA
Found at i:9359619 original size:30 final size:30
Alignment explanation
Indices: 9359576--9359648 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
9359566 TGACCATATT
*
9359576 AAAATATTGTAAAAAATAT-TAAAAATAGTA
1 AAAATATT-TAAAAAATATACAAAAATAGTA
*
9359606 AAAATTATTT-AAAAATATACAAAAATTGTA
1 AAAA-TATTTAAAAAATATACAAAAATAGTA
9359636 AAGAATATTTAAA
1 AA-AATATTTAAA
9359649 TTACTAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
29 8 0.22
30 21 0.57
31 8 0.22
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (30 bp):
AAAATATTTAAAAAATATACAAAAATAGTA
Found at i:9359731 original size:32 final size:31
Alignment explanation
Indices: 9359605--9359732 Score: 96
Period size: 33 Copynumber: 3.8 Consensus size: 31
9359595 TAAAAATAGT
*
9359605 AAAAATTATTTAAAAATATACAAAAATTGTAAAGA
1 AAAAATTA-TTAAAAAT-TA-TAAAATTGTAAA-A
*
9359640 ATATTTAAATTACTAAAAAATTA-AAAATTGTAAAA
1 A-A---AAATTA-TTAAAAATTATAAAATTGTAAAA
* * *
9359675 AAATATTGTTAGAAACATTTTAAAATTGTAAAA
1 AAAAATTATTA-AAA-ATTATAAAATTGTAAAA
9359708 AAAAAGTTATTAAAAATTATAAAAT
1 AAAAA-TTATTAAAAATTATAAAAT
9359733 ATTATTTAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
30 2 0.03
31 7 0.09
32 12 0.16
33 19 0.25
34 6 0.08
35 3 0.04
36 12 0.16
38 2 0.03
39 13 0.17
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.33
Consensus pattern (31 bp):
AAAAATTATTAAAAATTATAAAATTGTAAAA
Found at i:9359737 original size:20 final size:20
Alignment explanation
Indices: 9359705--9359756 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
9359695 TAAAATTGTA
9359705 AAAAAAAAGTTATTAAAAATT
1 AAAAAAAA-TTATTAAAAATT
* * *
9359726 ATAAAATATTATTTAAAATT
1 AAAAAAAATTATTAAAAATT
9359746 AAAAAAAATTA
1 AAAAAAAATTA
9359757 ACTTCAACTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAAAAATTATTAAAAATT
Found at i:9360046 original size:20 final size:21
Alignment explanation
Indices: 9360017--9360072 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
9360007 TTTTATGATC
*
9360017 TTTACAAATTTTAAAT-AGTGT
1 TTTAC-AATTTTAAATAACTGT
* * *
9360038 TTTATAATTTTTAATAACTTT
1 TTTACAATTTTAAATAACTGT
9360059 TTTACAATTTTAAA
1 TTTACAATTTTAAA
9360073 ATATTTTTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 9 0.32
21 19 0.68
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.54
Consensus pattern (21 bp):
TTTACAATTTTAAATAACTGT
Found at i:9360079 original size:20 final size:20
Alignment explanation
Indices: 9360017--9360091 Score: 55
Period size: 21 Copynumber: 3.6 Consensus size: 20
9360007 TTTTATGATC
*
9360017 TTTACAAATTTT-AAATAGTGT
1 TTTAC-AATTTTAAAATA-TTT
* *
9360038 TTTATAATTTTTAATAA-CTTT
1 TTTACAA-TTTTAA-AATATTT
9360059 TTTACAATTTTAAAATATTT
1 TTTACAATTTTAAAATATTT
*
9360079 TTAACAATATTTA
1 TTTACAAT-TTTA
9360092 TTTTTTTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
19 2 0.05
20 18 0.42
21 20 0.47
22 1 0.02
23 2 0.05
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (20 bp):
TTTACAATTTTAAAATATTT
Found at i:9360132 original size:20 final size:19
Alignment explanation
Indices: 9360017--9360126 Score: 73
Period size: 20 Copynumber: 5.6 Consensus size: 19
9360007 TTTTATGATC
* *
9360017 TTTACAAATTTTAAATAGTGT
1 TTTAC-AATTTT-AATATTTT
* *
9360038 TTTATAATTTTTAATAACTTT
1 TTTACAA-TTTTAAT-ATTTT
*
9360059 TTTACAATTTTAAAATATTT
1 TTTACAATTTTAATAT-TTT
*
9360079 TTAACAATATTT-AT-TTTT
1 TTTACAAT-TTTAATATTTT
*
9360097 TTTA-AAGTTCTAATATTTT
1 TTTACAA-TTTTAATATTTT
9360116 TTTACAATTTT
1 TTTACAATTTT
9360127 TTATATATTT
Statistics
Matches: 70, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
17 4 0.06
18 9 0.13
19 13 0.19
20 24 0.34
21 20 0.29
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (19 bp):
TTTACAATTTTAATATTTT
Found at i:9360137 original size:21 final size:21
Alignment explanation
Indices: 9359961--9360137 Score: 72
Period size: 20 Copynumber: 8.9 Consensus size: 21
9359951 CCACTTATTC
* *
9359961 ACAATTTTTAATA-ATTATTT
1 ACAATTTTTTATATATTTTTT
* ** *
9359981 GCAATTTTTTA-ATAAATTTC
1 ACAATTTTTTATATATTTTTT
* *
9360001 ACAATTTTTTAT-GA-TCTTT
1 ACAATTTTTTATATATTTTTT
* * *
9360020 ACAA-ATTTTAAATAGTGTTTT
1 ACAATTTTTTATATA-TTTTTT
* *
9360041 ATAATTTTTAATA-ACTTTTTT
1 ACAATTTTTTATATA-TTTTTT
* * *
9360062 ACAA-TTTTAAAATATTTTTA
1 ACAATTTTTTATATATTTTTT
*
9360082 ACAA-TATTTAT-T-TTTTTT
1 ACAATTTTTTATATATTTTTT
* * *
9360100 A-AAGTTCTAATAT-TTTTTT
1 ACAATTTTTTATATATTTTTT
9360119 ACAATTTTTTATATATTTT
1 ACAATTTTTTATATATTTT
9360138 AAATATTCTT
Statistics
Matches: 111, Mismatches: 35, Indels: 21
0.66 0.21 0.13
Matches are distributed among these distances:
17 2 0.02
18 15 0.14
19 17 0.15
20 52 0.47
21 20 0.18
22 5 0.05
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (21 bp):
ACAATTTTTTATATATTTTTT
Found at i:9374752 original size:53 final size:53
Alignment explanation
Indices: 9374605--9374770 Score: 212
Period size: 53 Copynumber: 3.1 Consensus size: 53
9374595 GACGAAAAAT
* **
9374605 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
9374657 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * * *
9374710 ATGTGATAATGTGATTCCGTATAAGACCAT-GTTTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
9374764 TATGTGA
1 -ATGTGA
9374771 ACCGTGTAAG
Statistics
Matches: 102, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 80 0.78
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:9378234 original size:16 final size:17
Alignment explanation
Indices: 9378203--9378235 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9378193 TCTAAAGTAG
9378203 TTTGAATATCAAAATATA
1 TTTGAATA-CAAAATATA
9378221 TTTGAATA-AAAATAT
1 TTTGAATACAAAATAT
9378236 CAGTTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (17 bp):
TTTGAATACAAAATATA
Found at i:9393764 original size:21 final size:21
Alignment explanation
Indices: 9393739--9393779 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9393729 ATATCCATAA
*
9393739 CCAGGATAACTTGGCATGTAG
1 CCAGGATAACCTGGCATGTAG
*
9393760 CCAGGGTAACCTGGCATGTA
1 CCAGGATAACCTGGCATGTA
9393780 TCCATATCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (21 bp):
CCAGGATAACCTGGCATGTAG
Found at i:9395305 original size:4 final size:4
Alignment explanation
Indices: 9395296--9395331 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
9395286 AATGCTGATG
9395296 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
9395332 TGCATAGATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:9396486 original size:19 final size:18
Alignment explanation
Indices: 9396416--9396531 Score: 70
Period size: 21 Copynumber: 5.8 Consensus size: 18
9396406 ATTCTAGAAA
*
9396416 ATTTTTAATTTTTTAACT
1 ATTTTTAATTTTTTAAAT
*
9396434 TTCTTTATATATTTTTTAGAAT
1 AT-TTT-TA-ATTTTTTA-AAT
9396456 ATTTTTGAAATTTTTATAAAT
1 ATTTTT--AATTTTT-TAAAT
**
9396477 ATTTTTAATTTTAAAAAAT
1 ATTTTTAATTTT-TTAAAT
* *
9396496 AATTTGAATTTTTTAAAATT
1 ATTTTTAATTTTTT-AAA-T
9396516 ATTTTATATATTTTTT
1 ATTTT-TA-ATTTTTT
9396532 GTTGATAGAG
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
18 1 0.01
19 26 0.35
20 8 0.11
21 27 0.36
22 13 0.17
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (18 bp):
ATTTTTAATTTTTTAAAT
Found at i:9396883 original size:15 final size:16
Alignment explanation
Indices: 9396857--9396888 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
9396847 ATTGAAATTT
9396857 TAAAATATAAAAAATA
1 TAAAATATAAAAAATA
9396873 TAAAA-ATAAAAAATA
1 TAAAATATAAAAAATA
9396888 T
1 T
9396889 CAACTTGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
TAAAATATAAAAAATA
Found at i:9404747 original size:25 final size:24
Alignment explanation
Indices: 9404713--9404870 Score: 185
Period size: 25 Copynumber: 6.5 Consensus size: 24
9404703 GACTTCAGCA
9404713 TGCTCTCTGATTATTAGCACGCCAG
1 TGCTCTCTGA-TATTAGCACGCCAG
* *
9404738 TGCTTTCTGATTATTAACACGCCAG
1 TGCTCTCTGA-TATTAGCACGCCAG
9404763 TGCTCTCTGAATATTAGCACGCCAG
1 TGCTCTCTG-ATATTAGCACGCCAG
* *
9404788 TGCTCTCTGATATATAGCACGTCAA
1 TGCTCTCTGATAT-TAGCACGCCAG
****
9404813 TGCTCTCTG--ATTAGCACATTTG
1 TGCTCTCTGATATTAGCACGCCAG
9404835 TGCTCTCTGATATTTAGCACGCCAG
1 TGCTCTCTGATA-TTAGCACGCCAG
9404860 TGCTCTCTGAT
1 TGCTCTCTGAT
9404871 TAGCACATTT
Statistics
Matches: 114, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
22 16 0.14
23 2 0.02
24 5 0.04
25 90 0.79
26 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (24 bp):
TGCTCTCTGATATTAGCACGCCAG
Found at i:9404838 original size:22 final size:22
Alignment explanation
Indices: 9404786--9404912 Score: 87
Period size: 22 Copynumber: 5.5 Consensus size: 22
9404776 TTAGCACGCC
* *
9404786 AGTGCTCTCTGATATATAGCACGTC
1 AGTGCTCTCTG--AT-TAGCACATT
*
9404811 AATGCTCTCTGATTAGCACATT
1 AGTGCTCTCTGATTAGCACATT
* ***
9404833 TGTGCTCTCTGATATTTAGCACGCC
1 AGTGCTCTCTG--A-TTAGCACATT
9404858 AGTGCTCTCTGATTAGCACATT
1 AGTGCTCTCTGATTAGCACATT
* *
9404880 TGTGCTCTTTG-TATAGCAC-TT
1 AGTGCTCTCTGAT-TAGCACATT
9404901 CAGTGCTCTCTG
1 -AGTGCTCTCTG
9404913 TTCATTAGTG
Statistics
Matches: 81, Mismatches: 16, Indels: 13
0.74 0.15 0.12
Matches are distributed among these distances:
21 3 0.04
22 47 0.58
23 3 0.04
24 1 0.01
25 27 0.33
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (22 bp):
AGTGCTCTCTGATTAGCACATT
Found at i:9404841 original size:47 final size:47
Alignment explanation
Indices: 9404787--9404912 Score: 186
Period size: 47 Copynumber: 2.7 Consensus size: 47
9404777 TAGCACGCCA
*
9404787 GTGCTCTCTGATATATAGCACGTCAATGCTCTCTGATTAGCACATTT
1 GTGCTCTCTGATATATAGCACGTCAGTGCTCTCTGATTAGCACATTT
* *
9404834 GTGCTCTCTGATATTTAGCACGCCAGTGCTCTCTGATTAGCACATTT
1 GTGCTCTCTGATATATAGCACGTCAGTGCTCTCTGATTAGCACATTT
* *
9404881 GTGCTCT-T--TGTATAGCACTTCAGTGCTCTCTG
1 GTGCTCTCTGATATATAGCACGTCAGTGCTCTCTG
9404913 TTCATTAGTG
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
44 20 0.28
46 1 0.01
47 51 0.71
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (47 bp):
GTGCTCTCTGATATATAGCACGTCAGTGCTCTCTGATTAGCACATTT
Found at i:9406009 original size:79 final size:79
Alignment explanation
Indices: 9405914--9406071 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
9405904 TCTGTCCGTG
9405914 AAAAAGAAAGATGATATCGTCGAAGATAAGACAAAGTCTGTATAATTTATTTCGATATGAATGAA
1 AAAAAGAAAGATGATATCGTCGAAGATAAGACAAAGTCTGTATAATTTATTTCGATATGAATGAA
9405979 ATTCTTACTTAATA
66 ATTCTTACTTAATA
9405993 AAAAAGAAAGATGATATCGTCGAAGATAAGACAAAGTCTGTATAATTTATTTCGATATGAATGAA
1 AAAAAGAAAGATGATATCGTCGAAGATAAGACAAAGTCTGTATAATTTATTTCGATATGAATGAA
9406058 ATTCTTACTTAATA
66 ATTCTTACTTAATA
9406072 GTTATCTGAA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (79 bp):
AAAAAGAAAGATGATATCGTCGAAGATAAGACAAAGTCTGTATAATTTATTTCGATATGAATGAA
ATTCTTACTTAATA
Found at i:9408334 original size:17 final size:17
Alignment explanation
Indices: 9408312--9408346 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9408302 TTAAATTTTC
9408312 TCTTTTCTCCCTTTCTT
1 TCTTTTCTCCCTTTCTT
**
9408329 TCTTTTCTTTCTTTCTT
1 TCTTTTCTCCCTTTCTT
9408346 T
1 T
9408347 TTCTCCCCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TCTTTTCTCCCTTTCTT
Found at i:9408338 original size:13 final size:13
Alignment explanation
Indices: 9408322--9408347 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9408312 TCTTTTCTCC
9408322 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
9408335 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
9408348 TCTCCCCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTCTTTCTTTT
Found at i:9408384 original size:33 final size:31
Alignment explanation
Indices: 9408315--9408384 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
9408305 AATTTTCTCT
* * * * *
9408315 TTTCTCCCTTTCTTTCTTTTCTTTCTTTCTT
1 TTTCTCCCCTGCTCTCTTTTCTTTCATTCTG
9408346 TTTCTCCCCTGCTCTCTGTTTCGTTTCATTCTG
1 TTTCTCCCCTGCTCTCT-TTTC-TTTCATTCTG
9408379 TTTCTC
1 TTTCTC
9408385 TTCTATCTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 14 0.44
32 4 0.12
33 14 0.44
ACGTcount: A:0.01, C:0.31, G:0.06, T:0.61
Consensus pattern (31 bp):
TTTCTCCCCTGCTCTCTTTTCTTTCATTCTG
Done.