Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 240 of 325
Found at i:75876844 original size:21 final size:21
Alignment explanation
Indices: 75876818--75876873 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
75876808 TATATGGCAT
75876818 ATTAAAAAATA-AATTAAAAA
1 ATTAAAAAATATAATTAAAAA
**
75876838 ATATAAAAAATATTTTTAAAAA
1 AT-TAAAAAATATAATTAAAAA
75876860 ATTAAAATAATATA
1 ATTAAAA-AATATA
75876874 TATAAAGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 2 0.07
21 14 0.47
22 14 0.47
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTAAAAAATATAATTAAAAA
Found at i:75876879 original size:22 final size:20
Alignment explanation
Indices: 75876818--75876879 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 20
75876808 TATATGGCAT
*
75876818 ATTAAAAAATAAATTAAAAA
1 ATTAAAAAATATATTAAAAA
*
75876838 ATATAAAAAATATTTTTAAAAA
1 AT-TAAAAAATA-TATTAAAAA
75876860 ATTAAAATAATATATATAAA
1 ATTAAAA-AATATAT-TAAA
75876880 GTTCATAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 16 0.46
22 17 0.49
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
ATTAAAAAATATATTAAAAA
Found at i:75877431 original size:21 final size:21
Alignment explanation
Indices: 75877365--75877438 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 21
75877355 GGTTTCTTGG
75877365 TTTAGGGTTTTGTTAAAATAA
1 TTTAGGGTTTTGTTAAAATAA
* ** *** ***
75877386 TTTAAGGTTAGGTTTGTAGGG
1 TTTAGGGTTTTGTTAAAATAA
75877407 TTTAGGGTTTTGTTAAAATAA
1 TTTAGGGTTTTGTTAAAATAA
*
75877428 TTTAGAGTTTT
1 TTTAGGGTTTT
75877439 AGATTTTAGA
Statistics
Matches: 34, Mismatches: 19, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (21 bp):
TTTAGGGTTTTGTTAAAATAA
Found at i:75877594 original size:34 final size:34
Alignment explanation
Indices: 75877488--75877578 Score: 114
Period size: 34 Copynumber: 2.7 Consensus size: 34
75877478 TTCTTTTTTA
** *
75877488 AAAATTAATTAAATTATGG-TTTAG-GGGTTTAAA
1 AAAATTAATTAAATT-TGGATTTAGTGTTTTTAAG
*
75877521 ATAAATTAATTAAATTTGGGTTTAGTGTTTTTAAG
1 A-AAATTAATTAAATTTGGATTTAGTGTTTTTAAG
75877556 AAAATTAATTAAATTTGGATTTA
1 AAAATTAATTAAATTTGGATTTA
75877579 ATTTTTTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
33 4 0.08
34 40 0.78
35 7 0.14
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (34 bp):
AAAATTAATTAAATTTGGATTTAGTGTTTTTAAG
Found at i:75878094 original size:126 final size:126
Alignment explanation
Indices: 75877870--75878310 Score: 681
Period size: 126 Copynumber: 3.5 Consensus size: 126
75877860 TGCACGCAAA
* * * *
75877870 ATGCACTATCTGCAAAATTGAT-AAAAAAGCTCACACGTAGACGCTCTTTTTCTACAGTAGTTCC
1 ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
75877934 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAATGCTTCAAGCAGG
66 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAATGCTTCAAGCAGG
75877995 ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
1 ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
* *
75878060 TGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAATGTCAAAAACGCTTCAAGCAGG
66 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAATGCTTCAAGCAGG
*
75878121 ATGCACTATCAGCAAAGTTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
1 ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
* * * * * *
75878186 TAAAAAAATAATTTTAAGAAGATGTTTTTGAACAAATAGTGTCAAAAATACTTCAAGCAGG
66 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAATGCTTCAAGCAGG
* * * * *
75878247 ATGCACTATCAGCAAAATT-ACTGCAAAAAGCTC-TCACGTGGATGCTCTTTTTCAATAGTAGTT
1 ATGCACTATCAGCAAAATTGA-TGAAAAAAGCTCAT-ACATGGACGCTCTTTTTCTACAGTAGTT
75878310 C
64 C
75878311 ATGTTTGGCC
Statistics
Matches: 292, Mismatches: 21, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
125 23 0.08
126 269 0.92
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (126 bp):
ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAATGCTTCAAGCAGG
Found at i:75878232 original size:252 final size:256
Alignment explanation
Indices: 75877653--75878310 Score: 844
Period size: 252 Copynumber: 2.6 Consensus size: 256
75877643 GGATTTTGGT
* * * *
75877653 TTTTTTTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATGGTTCTGAACAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
* * * * * * *
75877718 ACGCTTCAAGTAGGTTGCACTGTCAACAAAATTACTGAAAAAAAGCTCTCAGATGGACACTCTTT
66 ATGCTTCAAGCAGGATGCACTATCAGCAAAATTACTG-AAAAAAGCTCTCACATGGACGCTCTTT
* * ** *
75877783 TTCTAGAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAATTCTGAACAAATGGTGTCAAAAATA
130 TTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAATTCTAAACAAATAATGTCAAAAACA
* *
75877848 CTTAAAGCAGAATGCACGCAAAATGCACTATCTGCAAAATTGATAAAAAAGCTCACACGTAGACG
195 CTT--A-CA-AATGCACG--AAATGCACTATCAGCAAAATTGATAAAAAAGCTCACACATAGACG
75877913 CTC
254 CTC
* *
75877916 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
75877981 ATGCTTCAAGCAGGATGCACTATCAGCAAAATTGA-TGAAAAAAGCTCAT-ACATGGACGCTCTT
66 ATGCTTCAAGCAGGATGCACTATCAGCAAAATT-ACTGAAAAAAGCTC-TCACATGGACGCTCTT
* **
75878044 TTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAATGTCAAAAAC
129 TTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAATTCTAAACAAATAATGTCAAAAAC
* * * * *
75878109 GCTT-C-AA-GCA-G-GATGCACTATCAGCAAAGTTGATGAAAAAAGCTCATACATGGACGCTC
194 ACTTACAAATGCACGAAATGCACTATCAGCAAAATTGAT-AAAAAAGCTCACACATAGACGCTC
* * *
75878168 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTAAGAAGATGTTTTTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
* * * *
75878233 ATACTTCAAGCAGGATGCACTATCAGCAAAATTACTGCAAAAAGCTCTCACGTGGATGCTCTTTT
66 ATGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCTCACATGGACGCTCTTTT
* *
75878298 TCAATAGTAGTTC
131 TCTACAGTAGTTC
75878311 ATGTTTGGCC
Statistics
Matches: 351, Mismatches: 39, Indels: 21
0.85 0.09 0.05
Matches are distributed among these distances:
251 22 0.06
252 149 0.42
254 1 0.00
255 3 0.01
256 2 0.01
258 1 0.00
262 82 0.23
263 90 0.26
264 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (256 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
ATGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCTCACATGGACGCTCTTTT
TCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAATTCTAAACAAATAATGTCAAAAACAC
TTACAAATGCACGAAATGCACTATCAGCAAAATTGATAAAAAAGCTCACACATAGACGCTC
Found at i:75881387 original size:24 final size:24
Alignment explanation
Indices: 75881355--75881433 Score: 149
Period size: 24 Copynumber: 3.3 Consensus size: 24
75881345 GTTGCATTAT
*
75881355 TTCTATTGCCTTACTCAAAAGAAC
1 TTCTATTGCCTTATTCAAAAGAAC
75881379 TTCTATTGCCTTATTCAAAAGAAC
1 TTCTATTGCCTTATTCAAAAGAAC
75881403 TTCTATTGCCTTATTCAAAAGAAC
1 TTCTATTGCCTTATTCAAAAGAAC
75881427 TTCTATT
1 TTCTATT
75881434 TTATTAAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.39
Consensus pattern (24 bp):
TTCTATTGCCTTATTCAAAAGAAC
Found at i:75881443 original size:21 final size:22
Alignment explanation
Indices: 75881355--75881443 Score: 99
Period size: 24 Copynumber: 3.8 Consensus size: 22
75881345 GTTGCATTAT
*
75881355 TTCTATTGCCTTACTCAAAAGAAC
1 TTCTATT--CTTATTCAAAAGAAC
75881379 TTCTATTGCCTTATTCAAAAGAAC
1 TTCTATT--CTTATTCAAAAGAAC
75881403 TTCTATTGCCTTATTCAAAAGAAC
1 TTCTATT--CTTATTCAAAAGAAC
*
75881427 TTCTATT-TTATTAAAAA
1 TTCTATTCTTATTCAAAA
75881444 TATAAAACTA
Statistics
Matches: 63, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
21 9 0.14
24 54 0.86
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (22 bp):
TTCTATTCTTATTCAAAAGAAC
Found at i:75881935 original size:18 final size:18
Alignment explanation
Indices: 75881912--75881949 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
75881902 GGAAAATGAA
*
75881912 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGGAT
75881930 ACATATAAGGGCTAGGAT
1 ACATATAAGGGCTAGGAT
75881948 AC
1 AC
75881950 GCACCTGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAT
Found at i:75887197 original size:28 final size:28
Alignment explanation
Indices: 75887149--75887203 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
75887139 TTATTAACCC
75887149 CATAAGTTATAAAACTCTTCCTATACCT
1 CATAAGTTATAAAACTCTTCCTATACCT
* * *
75887177 CATAAGTTATGAGACTTTTCCTATACC
1 CATAAGTTATAAAACTCTTCCTATACC
75887204 CCATTAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.36
Consensus pattern (28 bp):
CATAAGTTATAAAACTCTTCCTATACCT
Found at i:75893383 original size:47 final size:47
Alignment explanation
Indices: 75893309--75893728 Score: 740
Period size: 47 Copynumber: 9.0 Consensus size: 47
75893299 AAATGATAGT
75893309 GGCCTAATGGCCGA---GATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
75893353 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
75893400 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
75893447 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
75893494 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
75893541 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
75893588 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
75893635 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-AG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * * *
75893681 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
75893728 G
1 G
75893729 TCCCGAAGGG
Statistics
Matches: 363, Mismatches: 9, Indels: 5
0.96 0.02 0.01
Matches are distributed among these distances:
44 14 0.04
46 38 0.10
47 311 0.86
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:75893902 original size:36 final size:37
Alignment explanation
Indices: 75893847--75893924 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
75893837 CCGAGCTCTA
* *
75893847 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
75893883 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
75893920 AAGAC
1 AAGAC
75893925 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75895816 original size:42 final size:43
Alignment explanation
Indices: 75895769--75895870 Score: 197
Period size: 42 Copynumber: 2.4 Consensus size: 43
75895759 TTGGTTTTCA
75895769 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTT-TGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
75895811 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
75895854 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
75895871 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 34 0.58
43 25 0.42
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:75895887 original size:29 final size:29
Alignment explanation
Indices: 75895852--75895925 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
75895842 GTTGTGAGAT
* *
75895852 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
75895881 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
75895910 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75895926 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:75896356 original size:40 final size:40
Alignment explanation
Indices: 75896233--75896428 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
75896223 TCGAATGATG
** *
75896233 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
75896273 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
75896313 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
75896353 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
75896393 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
75896429 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:75896369 original size:80 final size:81
Alignment explanation
Indices: 75896233--75896429 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
75896223 TCGAATGATG
**
75896233 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
75896295 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
75896313 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
75896377 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
75896393 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
75896430 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:75899894 original size:47 final size:47
Alignment explanation
Indices: 75899828--75900252 Score: 737
Period size: 47 Copynumber: 9.1 Consensus size: 47
75899818 GAAATGATAG
75899828 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75899875 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75899922 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75899969 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75900016 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75900063 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75900110 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75900157 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
75900203 -AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75900249 TAAG
1 TAAG
75900253 TCCCGAAGGG
Statistics
Matches: 361, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
45 36 0.10
47 325 0.90
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:75900426 original size:36 final size:37
Alignment explanation
Indices: 75900371--75900448 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
75900361 CCGAGCTCTA
* *
75900371 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
75900407 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
75900444 AAGAC
1 AAGAC
75900449 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75902344 original size:43 final size:43
Alignment explanation
Indices: 75902296--75902398 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
75902286 TTGGTTTTCA
75902296 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
75902339 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
75902382 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
75902399 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:75902415 original size:29 final size:29
Alignment explanation
Indices: 75902380--75902453 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
75902370 GTTGTGAGAT
* *
75902380 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
75902409 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
75902438 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75902454 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:75902889 original size:40 final size:40
Alignment explanation
Indices: 75902766--75902961 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
75902756 TCGAATGATG
** *
75902766 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
75902806 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
75902846 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
75902886 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
75902926 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
75902962 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:75902902 original size:80 final size:81
Alignment explanation
Indices: 75902766--75902962 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
75902756 TCGAATGATG
**
75902766 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
75902828 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
75902846 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
75902910 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
75902926 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
75902963 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:75906430 original size:47 final size:47
Alignment explanation
Indices: 75906359--75906580 Score: 417
Period size: 47 Copynumber: 4.7 Consensus size: 47
75906349 GAAATGATAG
*
75906359 TAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75906406 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75906453 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75906500 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75906547 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
75906581 GGCTAGTTAT
Statistics
Matches: 170, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 170 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:75908830 original size:28 final size:28
Alignment explanation
Indices: 75908790--75908852 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
75908780 GTCATTATCA
*
75908790 ACCCCATAAGTTATAAAACTCTTCTTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
75908818 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
75908846 ACCCCAT
1 ACCCCAT
75908853 TAATATGGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:75909893 original size:46 final size:46
Alignment explanation
Indices: 75909798--75909894 Score: 106
Period size: 46 Copynumber: 2.1 Consensus size: 46
75909788 ACAAATTAAT
* * **
75909798 AATATTATCCAATTGCATAATTAGTAGTACACCACATGATAATTAC
1 AATATTATCCAAGTGCATAACTAGTAGTACACCACATGATAAGCAC
* * * *
75909844 AATATTGTCCAAGTGCATTACTAGTATTACACCACATTA-AAGCATC
1 AATATTATCCAAGTGCATAACTAGTAGTACACCACATGATAAGCA-C
75909890 AATAT
1 AATAT
75909895 CTTCAACCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
45 3 0.07
46 39 0.93
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (46 bp):
AATATTATCCAAGTGCATAACTAGTAGTACACCACATGATAAGCAC
Found at i:75925878 original size:20 final size:20
Alignment explanation
Indices: 75925853--75925891 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
75925843 AAAAAAGAGG
75925853 TTCTCTTAAAGTTTTGCTAT
1 TTCTCTTAAAGTTTTGCTAT
75925873 TTCTCTTAAAGTTTTGCTA
1 TTCTCTTAAAGTTTTGCTA
75925892 AGTGTTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.15, G:0.10, T:0.54
Consensus pattern (20 bp):
TTCTCTTAAAGTTTTGCTAT
Found at i:75935700 original size:23 final size:22
Alignment explanation
Indices: 75935664--75935709 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
75935654 ACTTGAATTA
*
75935664 TTTAAAATATAAATATTATATT
1 TTTAAAAAATAAATATTATATT
75935686 TTTAAAGAAATAAATATTATATT
1 TTTAAA-AAATAAATATTATATT
75935709 T
1 T
75935710 CAATCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTAAAAAATAAATATTATATT
Found at i:75938552 original size:44 final size:44
Alignment explanation
Indices: 75938497--75938610 Score: 210
Period size: 44 Copynumber: 2.6 Consensus size: 44
75938487 GATACAAGCT
*
75938497 AGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTGTTTTGTGTC
1 AGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTGTTTTATGTC
*
75938541 AGTGTAAGACCTGTTTGGGACATGACGTCAGCTTGTTTTATGTC
1 AGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTGTTTTATGTC
75938585 AGTGTAAGACCTGTTTGGGACATGGC
1 AGTGTAAGACCTGTTTGGGACATGGC
75938611 ATCGACACCG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.34
Consensus pattern (44 bp):
AGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTGTTTTATGTC
Found at i:75938555 original size:22 final size:22
Alignment explanation
Indices: 75938530--75938600 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
75938520 GGCGTCAGCT
75938530 TGTTTTGTGTCAGTGTAAGACC
1 TGTTTTGTGTCAGTGTAAGACC
* * * * *
75938552 TG-TTTGGGACATGACGTCAG-CT
1 TGTTTTGTGTCA-G-TGTAAGACC
*
75938574 TGTTTTATGTCAGTGTAAGACC
1 TGTTTTGTGTCAGTGTAAGACC
75938596 TGTTT
1 TGTTT
75938601 GGGACATGGC
Statistics
Matches: 34, Mismatches: 11, Indels: 8
0.64 0.21 0.15
Matches are distributed among these distances:
21 11 0.32
22 13 0.38
23 10 0.29
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.41
Consensus pattern (22 bp):
TGTTTTGTGTCAGTGTAAGACC
Found at i:75942068 original size:30 final size:30
Alignment explanation
Indices: 75942026--75942093 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
75942016 ACCCCAGGAG
* *
75942026 ACACATGGCCATGTACCAAGGCCGTGTGTC
1 ACACACGGCCATGTACCAAGGCCATGTGTC
* **
75942056 ATACACGGCCATGTACCAATTCCATGTGTC
1 ACACACGGCCATGTACCAAGGCCATGTGTC
75942086 ACACACGG
1 ACACACGG
75942094 TTGAGCCATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (30 bp):
ACACACGGCCATGTACCAAGGCCATGTGTC
Found at i:75942481 original size:29 final size:29
Alignment explanation
Indices: 75942439--75942495 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
75942429 CTTAAAACTA
75942439 AGCCACAACATGCCATTTCTCATCCATTT
1 AGCCACAACATGCCATTTCTCATCCATTT
75942468 AGCCACAACATGCCATTTCTCATCCATT
1 AGCCACAACATGCCATTTCTCATCCATT
75942496 ATACATCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.35, G:0.07, T:0.30
Consensus pattern (29 bp):
AGCCACAACATGCCATTTCTCATCCATTT
Found at i:75943209 original size:43 final size:43
Alignment explanation
Indices: 75943148--75943260 Score: 199
Period size: 43 Copynumber: 2.6 Consensus size: 43
75943138 CAATGCCATT
*
75943148 TCCCAGATATGGTCTTACATGTAATCAAAATACCATGCAAATG
1 TCCCAGATATGGTCTTACATGTAATCAAAATACAATGCAAATG
*
75943191 TCCCACATATGGTCTTACATGTAATCAAAATACAATGCAAATG
1 TCCCAGATATGGTCTTACATGTAATCAAAATACAATGCAAATG
*
75943234 TCCCAGACATGGTCTTACATGTAATCA
1 TCCCAGATATGGTCTTACATGTAATCA
75943261 CATCTCGGTA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.28
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACATGTAATCAAAATACAATGCAAATG
Found at i:75947686 original size:43 final size:42
Alignment explanation
Indices: 75947546--75947708 Score: 184
Period size: 42 Copynumber: 3.9 Consensus size: 42
75947536 TAGGGTTACT
* *
75947546 GAGATTACGTGTAAGACCATATTTGGGATATGGCATCAATAC
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* ** * *
75947588 GAGATTTCGTGTAAGACCATATCCAGGATATGACATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* * * *
75947630 GAGACTT-TGTGTAAGACTATAGCTGGGCTATTGGCATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAC
* *
75947673 GAGATTACATGTAAGACCATATCTGTGATATGGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCAT
75947709 TGGTATGGTA
Statistics
Matches: 97, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 64 0.66
43 33 0.34
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:75950559 original size:74 final size:73
Alignment explanation
Indices: 75950481--75950685 Score: 232
Period size: 74 Copynumber: 2.8 Consensus size: 73
75950471 GCCATAATTA
* * * * * * *
75950481 GGAAGCTCATGCGAGCCAATAACGGGTAA-CTCTGAAGAGCCATTAATTAGAAAGCTCTGGATAG
1 GGAAGTTCAAGCGAGCCAATATCGGG-AAGCTC-GAAGAGCCATTAATCAGAAAGCTCCGAATAA
*
75950545 CCATATATCT
64 CCATATATCG
* * *
75950555 GGAAGTTCAAGCAAGCTAATATCGGGAAGCTCCAGAGAGCCATTAATCAGAAAGCTCCGAATAAC
1 GGAAGTTCAAGCGAGCCAATATCGGGAAGCTCGA-AGAGCCATTAATCAGAAAGCTCCGAATAAC
75950620 CATATATCG
65 CATATATCG
* * * *
75950629 GGAAGTTTAAGCGAGCCACTATTGGGAAGCTCCGGAGAGCCATTAATCAGAAAGCTC
1 GGAAGTTCAAGCGAGCCAATATCGGGAAGCT-CGAAGAGCCATTAATCAGAAAGCTC
75950686 ACAAAGAACC
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
73 3 0.03
74 106 0.96
75 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (73 bp):
GGAAGTTCAAGCGAGCCAATATCGGGAAGCTCGAAGAGCCATTAATCAGAAAGCTCCGAATAACC
ATATATCG
Found at i:75950823 original size:24 final size:25
Alignment explanation
Indices: 75950796--75950867 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 25
75950786 AGATGCTCCA
*
75950796 AAGAACTAT-TAACGGGAAGCTCGC
1 AAGAACCATATAACGGGAAGCTCGC
75950820 AAGAACCATATAACGGGAAGCTCG-
1 AAGAACCATATAACGGGAAGCTCGC
* * *
75950844 AGAGGACCATATATCGGGATGCTC
1 A-AGAACCATATAACGGGAAGCTC
75950868 ATGAGAGCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 9 0.21
25 33 0.79
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (25 bp):
AAGAACCATATAACGGGAAGCTCGC
Found at i:75953726 original size:40 final size:38
Alignment explanation
Indices: 75953682--75953775 Score: 91
Period size: 40 Copynumber: 2.4 Consensus size: 38
75953672 GGTACTTAAC
*
75953682 GGTGTGTAGGGTTGGATGGG-AAGATTTTATCCCCATATTT
1 GGTGTGTAGGGTTGGATGGGTAA-ATTTTATCCCCACA--T
* * * * *
75953722 GGTGTGCAGGGATGGGTGGGTCAATTTTATCCTCACAT
1 GGTGTGTAGGGTTGGATGGGTAAATTTTATCCCCACAT
*
75953760 GGTGTGTTGGGTTGGA
1 GGTGTGTAGGGTTGGA
75953776 CAGAGTTGGT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
38 13 0.30
40 29 0.67
41 1 0.02
ACGTcount: A:0.17, C:0.11, G:0.37, T:0.35
Consensus pattern (38 bp):
GGTGTGTAGGGTTGGATGGGTAAATTTTATCCCCACAT
Found at i:75971085 original size:17 final size:17
Alignment explanation
Indices: 75971059--75971092 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
75971049 TAGACACACA
*
75971059 GGTGTTTGTCTAGGCCG
1 GGTGTGTGTCTAGGCCG
75971076 GGTGTGTGTCTAGGCCG
1 GGTGTGTGTCTAGGCCG
75971093 TATGTGACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.18, G:0.44, T:0.32
Consensus pattern (17 bp):
GGTGTGTGTCTAGGCCG
Found at i:75971098 original size:17 final size:17
Alignment explanation
Indices: 75971065--75971098 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75971055 CACAGGTGTT
*
75971065 TGTCTAGGCCGGGTGTG
1 TGTCTAGGCCGGATGTG
*
75971082 TGTCTAGGCCGTATGTG
1 TGTCTAGGCCGGATGTG
75971099 ACACACGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.18, G:0.41, T:0.32
Consensus pattern (17 bp):
TGTCTAGGCCGGATGTG
Found at i:75973754 original size:23 final size:23
Alignment explanation
Indices: 75973711--75973759 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
75973701 CCCATATTGT
**
75973711 TTGTAAAGAAGAACGACGGTTCA
1 TTGTAAAGAAGAAAAACGGTTCA
*
75973734 TTGTAAAGAAGAAAAATGGTTCA
1 TTGTAAAGAAGAAAAACGGTTCA
75973757 TTG
1 TTG
75973760 AGGCTATGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (23 bp):
TTGTAAAGAAGAAAAACGGTTCA
Found at i:75984411 original size:20 final size:20
Alignment explanation
Indices: 75984386--75984459 Score: 139
Period size: 20 Copynumber: 3.7 Consensus size: 20
75984376 AACAGGGGTC
75984386 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
75984406 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
75984426 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
*
75984446 ACACACCCGTGTGG
1 ACACGCCCGTGTGG
75984460 ATAGGCCGTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.12, C:0.27, G:0.38, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:75988882 original size:18 final size:18
Alignment explanation
Indices: 75988839--75988883 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
75988829 TGTGGAACTA
*
75988839 GGCAGAGATGAAGATGGT
1 GGCAGAGGTGAAGATGGT
*
75988857 GGCAGAGGTGAAGGTGGT
1 GGCAGAGGTGAAGATGGT
*
75988875 GGTAGAGGT
1 GGCAGAGGT
75988884 TGGGTTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.04, G:0.51, T:0.18
Consensus pattern (18 bp):
GGCAGAGGTGAAGATGGT
Found at i:76013502 original size:21 final size:20
Alignment explanation
Indices: 76013472--76013510 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
76013462 TCTTTTGGAC
76013472 GTGGACGGTTTGGGACCTTAA
1 GTGGACGGTTTGGG-CCTTAA
*
76013493 GTGGATGGTTTGGGCCTT
1 GTGGACGGTTTGGGCCTT
76013511 TTCCTCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.13, C:0.13, G:0.41, T:0.33
Consensus pattern (20 bp):
GTGGACGGTTTGGGCCTTAA
Found at i:76015152 original size:31 final size:31
Alignment explanation
Indices: 76015107--76015276 Score: 105
Period size: 31 Copynumber: 5.5 Consensus size: 31
76015097 GAACACTGGC
* * *
76015107 ACATAGTACTTGATAAAATATAAACATCAAC
1 ACATAGTGCCTGATAAAATATAAACATCAAT
* * * *
76015138 ACATTGTGCCTGATACAATATGAACA-CTGAT
1 ACATAGTGCCTGATAAAATATAAACATC-AAT
* * *
76015169 ACATAGTACCTGATAAAATATAATCACCAAT
1 ACATAGTGCCTGATAAAATATAAACATCAAT
* **
76015200 ACATAGT-ACTAGATAAAATATATTCATCCAA-
1 ACATAGTGCCT-GATAAAATATAAACAT-CAAT
* * * * *
76015231 ACATTA-TGCCTGAGACAATATGAATACCAAT
1 ACA-TAGTGCCTGATAAAATATAAACATCAAT
*
76015262 ACATAGTACCTGATA
1 ACATAGTGCCTGATA
76015277 TTTCAAAACC
Statistics
Matches: 105, Mismatches: 26, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
30 8 0.08
31 89 0.85
32 8 0.08
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (31 bp):
ACATAGTGCCTGATAAAATATAAACATCAAT
Found at i:76015215 original size:93 final size:93
Alignment explanation
Indices: 76015107--76015276 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
76015097 GAACACTGGC
* * * **
76015107 ACATAGTACTTGATAAAATATAAACAT-CAACACATTGTGCCTGATACAATATGAACACTGATAC
1 ACATAGTACTAGATAAAATATAAACATCCAA-ACATTATGCCTGAGACAATATGAACACCAATAC
76015171 ATAGTACCTGATAAAATATAATCACCAAT
65 ATAGTACCTGATAAAATATAATCACCAAT
** *
76015200 ACATAGTACTAGATAAAATATATTCATCCAAACATTATGCCTGAGACAATATGAATACCAATACA
1 ACATAGTACTAGATAAAATATAAACATCCAAACATTATGCCTGAGACAATATGAACACCAATACA
76015265 TAGTACCTGATA
66 TAGTACCTGATA
76015277 TTTCAAAACC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 65 0.96
94 3 0.04
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (93 bp):
ACATAGTACTAGATAAAATATAAACATCCAAACATTATGCCTGAGACAATATGAACACCAATACA
TAGTACCTGATAAAATATAATCACCAAT
Found at i:76015220 original size:62 final size:62
Alignment explanation
Indices: 76015083--76015220 Score: 161
Period size: 62 Copynumber: 2.2 Consensus size: 62
76015073 TATCTCAACC
* * * * *
76015083 ACTGATAAGATAATGAACACTGGCACATAGTACTTGATAAAATATAAACATCAACACATTGTG
1 ACTGATAAAAT-ATGAACACTGACACATAGTACCTGATAAAATATAAACACCAACACATAGTG
* * * * *
76015146 CCTGATACAATATGAACACTGATACATAGTACCTGATAAAATATAATCACCAATACATAGT-
1 ACTGATAAAATATGAACACTGACACATAGTACCTGATAAAATATAAACACCAACACATAGTG
76015207 ACTAGATAAAATAT
1 ACT-GATAAAATAT
76015221 ATTCATCCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
61 2 0.03
62 52 0.84
63 8 0.13
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.26
Consensus pattern (62 bp):
ACTGATAAAATATGAACACTGACACATAGTACCTGATAAAATATAAACACCAACACATAGTG
Found at i:76017486 original size:2 final size:2
Alignment explanation
Indices: 76017479--76017505 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76017469 AATTAGGCTT
76017479 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
76017506 ATCATACTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:76019851 original size:20 final size:20
Alignment explanation
Indices: 76019826--76019868 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
76019816 ATGAAGTATG
76019826 CGAAATTATGCTTTATTACA
1 CGAAATTATGCTTTATTACA
76019846 CGAAATTATGCTTTATTACA
1 CGAAATTATGCTTTATTACA
76019866 CGA
1 CGA
76019869 TTTTTGTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (20 bp):
CGAAATTATGCTTTATTACA
Found at i:76026163 original size:28 final size:28
Alignment explanation
Indices: 76026110--76026216 Score: 134
Period size: 28 Copynumber: 4.0 Consensus size: 28
76026100 CACTTTGTGC
76026110 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
* *
76026139 TATTTTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
76026167 GATACTGGTGTGTTTTGGAGGA-T-TA-
1 TATTCTGGTGTGTTTTGGAGGATTATAT
76026192 TA--CTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
76026217 CTGGTGTGTT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
23 18 0.26
24 1 0.01
25 3 0.04
26 2 0.03
27 1 0.01
28 27 0.39
29 17 0.25
ACGTcount: A:0.19, C:0.03, G:0.32, T:0.47
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:76026225 original size:25 final size:23
Alignment explanation
Indices: 76026168--76026228 Score: 122
Period size: 23 Copynumber: 2.7 Consensus size: 23
76026158 GGATTATATG
76026168 ATACTGGTGTGTTTTGGAGGATT
1 ATACTGGTGTGTTTTGGAGGATT
76026191 ATACTGGTGTGTTTTGGAGGATT
1 ATACTGGTGTGTTTTGGAGGATT
76026214 ATACTGGTGTGTTTT
1 ATACTGGTGTGTTTT
76026229 TGTAACACCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.16, C:0.05, G:0.33, T:0.46
Consensus pattern (23 bp):
ATACTGGTGTGTTTTGGAGGATT
Found at i:76047283 original size:40 final size:40
Alignment explanation
Indices: 76047200--76047462 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
76047190 TTGAATGCTG
* * * * * *
76047200 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
76047240 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
76047280 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
76047320 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
76047360 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
76047400 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
76047439 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
76047463 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:76047482 original size:79 final size:80
Alignment explanation
Indices: 76047239--76047497 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
76047229 AAGTGAATAT
* * * * * * *
76047239 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
76047303 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
76047319 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
76047384 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
76047399 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
76047463 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
76047478 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
76047498 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:76053343 original size:35 final size:34
Alignment explanation
Indices: 76053281--76053429 Score: 163
Period size: 35 Copynumber: 4.3 Consensus size: 34
76053271 CATGCAAACT
* ** **
76053281 ATAAGTATTATGTAAGTTGTAGTGATACGTGAGTC
1 ATAAGTATTATGTGAGTTGTAACGATACACGAG-C
* *
76053316 ATAACTATTATGTGAGATGTAACGATACACGAGC
1 ATAAGTATTATGTGAGTTGTAACGATACACGAGC
* *
76053350 TATAAGTATTGTATGAGTTGTAACGATACACGAGCC
1 -ATAAGTATTATGTGAGTTGTAACGATACACGAG-C
* *
76053386 ATAAGTATTATGTGAGTTGTAACAATAAACGAGC
1 ATAAGTATTATGTGAGTTGTAACGATACACGAGC
76053420 TATAAGTATT
1 -ATAAGTATT
76053430 GTACAAAATT
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
34 2 0.02
35 93 0.97
36 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.32
Consensus pattern (34 bp):
ATAAGTATTATGTGAGTTGTAACGATACACGAGC
Found at i:76053430 original size:70 final size:70
Alignment explanation
Indices: 76053279--76053432 Score: 200
Period size: 70 Copynumber: 2.2 Consensus size: 70
76053269 AACATGCAAA
* * ** ** * * *
76053279 CTATAAGTATTATGTAAGTTGTAGTGATACGTGAGTCATAACTATTATGTGAGATGTAACGATAC
1 CTATAAGTATTGTATAAGTTGTAACGATACACGAGCCATAACTATTATGTGAGATGTAACAATAA
76053344 ACGAG
66 ACGAG
* * *
76053349 CTATAAGTATTGTATGAGTTGTAACGATACACGAGCCATAAGTATTATGTGAGTTGTAACAATAA
1 CTATAAGTATTGTATAAGTTGTAACGATACACGAGCCATAACTATTATGTGAGATGTAACAATAA
76053414 ACGAG
66 ACGAG
76053419 CTATAAGTATTGTA
1 CTATAAGTATTGTA
76053433 CAAAATTGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.32
Consensus pattern (70 bp):
CTATAAGTATTGTATAAGTTGTAACGATACACGAGCCATAACTATTATGTGAGATGTAACAATAA
ACGAG
Found at i:76054484 original size:23 final size:24
Alignment explanation
Indices: 76054434--76054484 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
76054424 TCTTTCTTTT
* * *
76054434 TTTTCTTCTTATTTTTAGATTAGG
1 TTTTCCTCTTATTTTTAGAATAGA
*
76054458 TTTTCCTCTT-TTTTTAGAATATA
1 TTTTCCTCTTATTTTTAGAATAGA
76054481 TTTT
1 TTTT
76054485 ATTTTTTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.18, C:0.10, G:0.08, T:0.65
Consensus pattern (24 bp):
TTTTCCTCTTATTTTTAGAATAGA
Found at i:76056800 original size:40 final size:40
Alignment explanation
Indices: 76056756--76056928 Score: 154
Period size: 40 Copynumber: 4.3 Consensus size: 40
76056746 TAGCAAGCTC
**
76056756 TGTGCC-GATGTAGTTATCAGGCTTTCTGCCTAGCAGCCTT
1 TGTGCCAG-TGTAGTTATCAGGCTTAGTGCCTAGCAGCCTT
* * * *
76056796 TGTGCCAGTGTATTTATCGGGCTTAGTGCCTAACAACCTT
1 TGTGCCAGTGTAGTTATCAGGCTTAGTGCCTAGCAGCCTT
* * * *
76056836 TGTGCCGGTGT-GTTTATCAAGCTTAGTGCGTAGCAGGCTT
1 TGTGCCAGTGTAG-TTATCAGGCTTAGTGCCTAGCAGCCTT
* * * *
76056876 CGTGCCAGTGTATTTTATCGGGC-TATGTGCCTAGCAGGCTT
1 TGTGCCAGTGTA-GTTATCAGGCTTA-GTGCCTAGCAGCCTT
*
76056917 TGTGCTAGTGTA
1 TGTGCCAGTGTA
76056929 TCAAATTGTC
Statistics
Matches: 106, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
40 74 0.70
41 32 0.30
ACGTcount: A:0.16, C:0.21, G:0.28, T:0.35
Consensus pattern (40 bp):
TGTGCCAGTGTAGTTATCAGGCTTAGTGCCTAGCAGCCTT
Found at i:76056911 original size:41 final size:41
Alignment explanation
Indices: 76056782--76056929 Score: 167
Period size: 40 Copynumber: 3.7 Consensus size: 41
76056772 TCAGGCTTTC
76056782 TGCCTAGCAGCCTTTGTGCCAGTGTA-TTTATCGGGCTTAG
1 TGCCTAGCAGCCTTTGTGCCAGTGTATTTTATCGGGCTTAG
* * * * **
76056822 TGCCTAACAACCTTTGTGCCGGTGT-GTTTATCAAGCTTAG
1 TGCCTAGCAGCCTTTGTGCCAGTGTATTTTATCGGGCTTAG
* * *
76056862 TGCGTAGCAGGCTTCGTGCCAGTGTATTTTATCGGGC-TATG
1 TGCCTAGCAGCCTTTGTGCCAGTGTATTTTATCGGGCTTA-G
* *
76056903 TGCCTAGCAGGCTTTGTGCTAGTGTAT
1 TGCCTAGCAGCCTTTGTGCCAGTGTAT
76056930 CAAATTGTCT
Statistics
Matches: 88, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
40 55 0.62
41 33 0.38
ACGTcount: A:0.16, C:0.21, G:0.28, T:0.35
Consensus pattern (41 bp):
TGCCTAGCAGCCTTTGTGCCAGTGTATTTTATCGGGCTTAG
Found at i:76057786 original size:21 final size:21
Alignment explanation
Indices: 76057760--76057799 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76057750 CTATTAGCGT
*
76057760 ACACGGGCATGTGAAGTAGTC
1 ACACGGACATGTGAAGTAGTC
*
76057781 ACACGGACGTGTGAAGTAG
1 ACACGGACATGTGAAGTAG
76057800 CCATATGGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.35, T:0.17
Consensus pattern (21 bp):
ACACGGACATGTGAAGTAGTC
Found at i:76064834 original size:151 final size:151
Alignment explanation
Indices: 76064560--76064862 Score: 545
Period size: 151 Copynumber: 2.0 Consensus size: 151
76064550 TCTTTCAATT
* * *
76064560 CATCGATATACCTGTTGAACTATTTGAATTAATATCAGATACTCGGGGATCGTACACCCTAAGTG
1 CATCGATATACCTGTTGAACTATTTGAATTAATATCAGATACTCAGGAATCGTACACCCCAAGTG
*
76064625 CCAATACATAGCCAAAGTTATCTCAATCTCATATCTCATATAATGCTCACTCTCGAGCTATCAAC
66 CCAATACATAGCCAAAGTTATCTCAACCTCATATCTCATATAATGCTCACTCTCGAGCTATCAAC
*
76064690 GGGTCTGCTCACACAAGCTGA
131 AGGTCTGCTCACACAAGCTGA
76064711 CATCGATATACCTGTTGAACTATTTGAATTAATATCAGATACTCAGGAATC-TCACACCCCAAGT
1 CATCGATATACCTGTTGAACTATTTGAATTAATATCAGATACTCAGGAATCGT-ACACCCCAAGT
76064775 GCCAATACATAGCCAAAGTTATCTCAACCTCATATCTCATATAATGCTCACTCTCGAGCTATCAA
65 GCCAATACATAGCCAAAGTTATCTCAACCTCATATCTCATATAATGCTCACTCTCGAGCTATCAA
76064840 CAGGTCTGCTCACACAAGCTGA
130 CAGGTCTGCTCACACAAGCTGA
76064862 C
1 C
76064863 GGTCAAGATG
Statistics
Matches: 146, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
150 1 0.01
151 145 0.99
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (151 bp):
CATCGATATACCTGTTGAACTATTTGAATTAATATCAGATACTCAGGAATCGTACACCCCAAGTG
CCAATACATAGCCAAAGTTATCTCAACCTCATATCTCATATAATGCTCACTCTCGAGCTATCAAC
AGGTCTGCTCACACAAGCTGA
Found at i:76068735 original size:40 final size:40
Alignment explanation
Indices: 76068691--76068781 Score: 173
Period size: 40 Copynumber: 2.3 Consensus size: 40
76068681 TTTGGTTAAG
*
76068691 AAATTATAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
1 AAATTGTAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
76068731 AAATTGTAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
1 AAATTGTAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
76068771 AAATTGTAAAA
1 AAATTGTAAAA
76068782 GCTGCAAAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.32
Consensus pattern (40 bp):
AAATTGTAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
Found at i:76072236 original size:40 final size:39
Alignment explanation
Indices: 76072181--76072319 Score: 143
Period size: 40 Copynumber: 3.5 Consensus size: 39
76072171 ATCGGGCTAG
* ** *
76072181 TGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTTA
1 TGCCTAGCAGGCTTTGTGCCAGTGTAATTATCGGG-TTTA
** * *
76072221 TGCCTAGCAGGCTTTGTGCTGGTGTATTTATCGGGCTTA
1 TGCCTAGCAGGCTTTGTGCCAGTGTAATTATCGGGTTTA
* * * *
76072260 GTGCCTAGCAGGCTTTGTGTCATTGTAGTTATCGGGCTTGA
1 -TGCCTAGCAGGCTTTGTGCCAGTGTAATTATCGGG-TTTA
76072301 TGCCTAGCAGGCTTTGTGC
1 TGCCTAGCAGGCTTTGTGC
76072320 TGGTGTATCA
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 76 0.94
41 2 0.02
ACGTcount: A:0.17, C:0.19, G:0.29, T:0.35
Consensus pattern (39 bp):
TGCCTAGCAGGCTTTGTGCCAGTGTAATTATCGGGTTTA
Found at i:76072275 original size:80 final size:79
Alignment explanation
Indices: 76072165--76072327 Score: 236
Period size: 80 Copynumber: 2.1 Consensus size: 79
76072155 CTTGTATTGA
*
76072165 GTATTTATCGGGCTAGTGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTTATGCCTAGCA
1 GTATTTATCGGGCTAGTGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTGATGCCTAGCA
76072230 GGCTTTGTGCTGGT
66 GGCTTTGTGCTGGT
* *** * * * *
76072244 GTATTTATCGGGCTTAGTGCCTAGCAGGCTTTGTGTCATTGTAGTTATCGGGCTTGATGCCTAGC
1 GTATTTATCGGGC-TAGTGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTGATGCCTAGC
76072309 AGGCTTTGTGCTGGT
65 AGGCTTTGTGCTGGT
76072324 GTAT
1 GTAT
76072328 CAAATTGTCT
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 13 0.18
80 61 0.82
ACGTcount: A:0.17, C:0.17, G:0.29, T:0.36
Consensus pattern (79 bp):
GTATTTATCGGGCTAGTGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTGATGCCTAGCA
GGCTTTGTGCTGGT
Found at i:76083420 original size:70 final size:69
Alignment explanation
Indices: 76083336--76083602 Score: 250
Period size: 70 Copynumber: 3.8 Consensus size: 69
76083326 AATCTCTTTG
* * *
76083336 CGCCCAGC-ACTAGTTGGATATA-CCAACAATAAGTTTACCCAGCACTAGTCAAATAATTGATAA
1 CGCCCAGCGA-TAGTTGGATA-AGCCAACAATAAGTGTGCCCAACACTAGTCAAATAATTGA-AA
76083399 TGTTTTA
63 TGTTTTA
* * * * * *
76083406 CGCCCAGCGATAGTTGGATAAGCCAACGATAAGTGTGCCCAATACTAGTCGAACAATCGAAGATT
1 CGCCCAGCGATAGTTGGATAAGCCAACAATAAGTGTGCCCAACACTAGTCAAATAATTGAA-ATG
76083471 TTTTA
65 TTTTA
* * * * * ** **
76083476 CGCCCAGTGCTAGTTGGATAAGCCAACAATAAGTGTGGCTAGCACTAGTTGAATAATTGACGGTG
1 CGCCCAGCGATAGTTGGATAAGCCAACAATAAGTGTGCCCAACACTAGTCAAATAATTGA-AATG
*
76083541 TTTTG
65 TTTTA
* * * * * *
76083546 CGCCCAACGCTAGTTGGATAAACCAACGATAATTGTGCCTAACACTAGTCAAATAAT
1 CGCCCAGCGATAGTTGGATAAGCCAACAATAAGTGTGCCCAACACTAGTCAAATAAT
76083603 CAATAAGATT
Statistics
Matches: 161, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
69 2 0.01
70 158 0.98
71 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (69 bp):
CGCCCAGCGATAGTTGGATAAGCCAACAATAAGTGTGCCCAACACTAGTCAAATAATTGAAATGT
TTTA
Found at i:76083593 original size:140 final size:140
Alignment explanation
Indices: 76083336--76083595 Score: 342
Period size: 140 Copynumber: 1.9 Consensus size: 140
76083326 AATCTCTTTG
* *
76083336 CGCCCAGCACTAGTTGGATATACCAACAATAAGTTTACCCAGCACTAGTCAAATAATTGATAATG
1 CGCCCAGCACTAGTTGGATATACCAACAATAAGTGTACCCAGCACTAGTCAAATAATTGACAATG
* * *
76083401 TTTTACGCCCAGCGATAGTTGGATAAGCCAACGATAAGTGTGCCCAATACTAGTCGAACAATCGA
66 TTTTACGCCCAACGATAGTTGGATAAACCAACGATAAGTGTGCCCAACACTAGTCGAACAATCGA
76083466 AGATTTTTTA
131 AGATTTTTTA
** ** * ** **
76083476 CGCCCAGTGCTAGTTGGATA-AGCCAACAATAAGTGTGGCTAGCACTAGTTGAATAATTGACGGT
1 CGCCCAGCACTAGTTGGATATA-CCAACAATAAGTGTACCCAGCACTAGTCAAATAATTGACAAT
* * * *
76083540 GTTTTGCGCCCAACGCTAGTTGGATAAACCAACGATAATTGTGCCTAACACTAGTC
65 GTTTTACGCCCAACGATAGTTGGATAAACCAACGATAAGTGTGCCCAACACTAGTC
76083596 AAATAATCAA
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
139 1 0.01
140 100 0.99
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (140 bp):
CGCCCAGCACTAGTTGGATATACCAACAATAAGTGTACCCAGCACTAGTCAAATAATTGACAATG
TTTTACGCCCAACGATAGTTGGATAAACCAACGATAAGTGTGCCCAACACTAGTCGAACAATCGA
AGATTTTTTA
Found at i:76084768 original size:19 final size:19
Alignment explanation
Indices: 76084744--76084841 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
76084734 AATCTTTAAG
76084744 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
76084763 GATATGCAATCTCAGATAT
1 GATATGCAATCTTAGATAT
76084782 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
76084799 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
76084818 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
76084839 GAT
1 GAT
76084842 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:76084774 original size:36 final size:35
Alignment explanation
Indices: 76084734--76084841 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
76084724 ATGGAAATAT
76084734 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
*
76084770 AATC--TCAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
76084806 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
76084842 CTTGTAATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 6 0.10
34 2 0.03
36 28 0.47
38 7 0.12
40 9 0.15
41 7 0.12
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:76090489 original size:1 final size:1
Alignment explanation
Indices: 76090483--76090532 Score: 64
Period size: 1 Copynumber: 50.0 Consensus size: 1
76090473 CTTCTATTTC
* * * *
76090483 AAAAAAAAAAAAAAAAAAAAATAAAAGAAAAAAAAATAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
76090533 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.92, C:0.00, G:0.04, T:0.04
Consensus pattern (1 bp):
A
Found at i:76090503 original size:15 final size:15
Alignment explanation
Indices: 76090483--76090532 Score: 86
Period size: 15 Copynumber: 3.5 Consensus size: 15
76090473 CTTCTATTTC
76090483 AAAAAAAA-AAAA-A
1 AAAAAAAATAAAAGA
76090496 AAAAAAAATAAAAGA
1 AAAAAAAATAAAAGA
76090511 AAAAAAAATAAAAGA
1 AAAAAAAATAAAAGA
76090526 AAAAAAA
1 AAAAAAA
76090533 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.23
14 4 0.11
15 23 0.66
ACGTcount: A:0.92, C:0.00, G:0.04, T:0.04
Consensus pattern (15 bp):
AAAAAAAATAAAAGA
Found at i:76091622 original size:84 final size:84
Alignment explanation
Indices: 76091481--76091930 Score: 609
Period size: 84 Copynumber: 5.4 Consensus size: 84
76091471 ATTCAGCGCT
* *
76091481 TTAATCCCCTAAGCAATAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
76091546 AGCAGATCGAAGACTCGCC
66 AGCAGATCGAAGACTCGCC
*
76091565 TTAATTCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATTCTTATCTCCCTAAGCAGTAGTG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA-TCTTATCTCCCTAAGCAGTAGTG
76091629 GAGCAGATCGAAGACTCGCC
65 GAGCAGATCGAAGACTCGCC
* * *
76091649 TTAATCCCCTAAGTAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAGCGG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
*
76091709 AGCAGATCGATGACGACTCACC
66 AGCAGATCGA--A-GACTCGCC
* * *
76091731 TTAATCTCTTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
76091796 AGCAGATCGAAGAC-CGGCC
66 AGCAGATCGAAGACTC-GCC
* **
76091815 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAA-TAGTAGCAG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
76091877 AGCAGATCAAAGAAGA-T-GCAC
66 AGCAGATC---GAAGACTCGC-C
*
76091898 TTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
76091931 GTATAGCAGA
Statistics
Matches: 328, Mismatches: 22, Indels: 33
0.86 0.06 0.09
Matches are distributed among these distances:
79 38 0.12
80 1 0.00
81 15 0.05
82 41 0.12
83 35 0.11
84 158 0.48
85 1 0.00
87 39 0.12
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGAAGACTCGCC
Found at i:76091778 original size:166 final size:165
Alignment explanation
Indices: 76091481--76091930 Score: 560
Period size: 166 Copynumber: 2.7 Consensus size: 165
76091471 ATTCAGCGCT
* * * *
76091481 TTAATCCCCTAAGCAATAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 TTAATCCCCTAAGCAGTAGGGTAAC-AG---GATTCGCAGATCTTATCTCCCTAAGCAGTAGCGG
* *
76091546 AGCAGATCGA-AGACTCGCCTTAAT-TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAATTCT
62 AGCAGATCGAGAGACTCACCTTAATCT-CCTAAGCAGTAGGGTAACAGGTTAAATTTACAATTCT
76091609 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC-GCC
126 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-CGGCC
*
76091649 TTAATCCCCTAAGTAGTAGGGTAACAGG-TTCGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCA
1 TTAATCCCCTAAGCAGTAGGGTAACAGGATTCGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCA
*
76091713 GATCGATGACGACTCACCTTAATCTCTTAAGCAGTAGGGTAACAGGTTAAATTTACAGA-TCTTA
66 GATCGA-GA-GACTCACCTTAATCTCCTAAGCAGTAGGGTAACAGGTTAAATTTACA-ATTCTTA
76091777 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCGGCC
128 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCGGCC
* * *
76091815 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAA-TAGTAGCAG
1 TTAATCCCCTAAGCAGTAGGGTAACAGG----ATTCGCAGATCTTATCTCCCTAAGCAGTAGCGG
* * *
76091877 AGCAGATCAAAGAAGA-TGCA-CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
62 AGCAGATC-GAG-AGACT-CACCTTAATCTCCTAAGCAGTAGGGTAACAGGTTAAA
76091931 GTATAGCAGA
Statistics
Matches: 252, Mismatches: 16, Indels: 29
0.85 0.05 0.10
Matches are distributed among these distances:
163 40 0.16
165 2 0.01
166 110 0.44
167 36 0.14
168 43 0.17
169 9 0.04
171 12 0.05
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (165 bp):
TTAATCCCCTAAGCAGTAGGGTAACAGGATTCGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCA
GATCGAGAGACTCACCTTAATCTCCTAAGCAGTAGGGTAACAGGTTAAATTTACAATTCTTATCT
CCCTAAGCAGTAGTGGAGCAGATCGAAGACCGGCC
Found at i:76091866 original size:41 final size:41
Alignment explanation
Indices: 76091740--76091867 Score: 102
Period size: 41 Copynumber: 3.1 Consensus size: 41
76091730 CTTAATCTCT
*
76091740 TAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCC
1 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCC
* * ** * **
76091783 TAAGCAGTAGTGG-AGCAGATCGAA---GACCGGCCTTAATCCCC
1 TAAGCAGTAG-GGTAACAGGTTAAATTTG-CAGATCTT-AT-CCC
76091824 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCCC
1 TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCCC
76091865 TAA
1 TAA
76091868 TAGTAGCAGA
Statistics
Matches: 62, Mismatches: 15, Indels: 18
0.65 0.16 0.19
Matches are distributed among these distances:
40 3 0.05
41 31 0.50
42 3 0.05
43 22 0.35
44 3 0.05
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (41 bp):
TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCCC
Found at i:76092233 original size:87 final size:88
Alignment explanation
Indices: 76092055--76092236 Score: 203
Period size: 87 Copynumber: 2.1 Consensus size: 88
76092045 CGGAGAGCAG
* * * *
76092055 ATCGAAGACATAGCATATCTGACCTTCTAATATTTCATATTGAAGTAGATCCAAGATGATTTAGC
1 ATCGAAGACATAGCAGATCTGACCTTCTAATATTTCACACTGAAGCAGATCCAAGATGATTTAGC
* *
76092120 ATCCTTGTGTTTACAAGGAGCAA
66 ATCCTTGTATTTACAAGGAACAA
* * *
76092143 ATCGAAGACATAGCAGATCTGACCTTC-AGGTGTTT-ACGCTGAAGCAGATCCAAGATGATTT-G
1 ATCGAAGACATAGCAGATCTGACCTTCTA-ATATTTCACACTGAAGCAGATCCAAGATGATTTAG
*
76092205 ACAT-CTCTGTATTGT-CAAGGAACGA
65 -CATCCT-TGTATT-TACAAGGAACAA
76092230 ATCGAAG
1 ATCGAAG
76092237 GTAGCAGATT
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
86 3 0.04
87 46 0.57
88 31 0.39
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (88 bp):
ATCGAAGACATAGCAGATCTGACCTTCTAATATTTCACACTGAAGCAGATCCAAGATGATTTAGC
ATCCTTGTATTTACAAGGAACAA
Found at i:76092637 original size:19 final size:20
Alignment explanation
Indices: 76092613--76092655 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 20
76092603 AATCCTTAAG
76092613 GATATGCAATCTT-AGATAT
1 GATATGCAATCTTAAGATAT
76092632 GATATGCAATCTTAAAGATAT
1 GATATGCAATCTT-AAGATAT
76092653 GAT
1 GAT
76092656 CTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (20 bp):
GATATGCAATCTTAAGATAT
Found at i:76092653 original size:16 final size:16
Alignment explanation
Indices: 76092607--76092653 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 16
76092597 AAATATAATC
*
76092607 CTTAAGGATATGCAAT
1 CTTAAAGATATGCAAT
76092623 CTTAGATATGATATGCAAT
1 CTTA-A-A-GATATGCAAT
76092642 CTTAAAGATATG
1 CTTAAAGATATG
76092654 ATCTTGTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 10 0.37
17 2 0.07
18 1 0.04
19 14 0.52
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (16 bp):
CTTAAAGATATGCAAT
Found at i:76112929 original size:14 final size:14
Alignment explanation
Indices: 76112910--76112939 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76112900 ATTTAACCGA
76112910 ATATACATAAACTC
1 ATATACATAAACTC
*
76112924 ATATACATATACTC
1 ATATACATAAACTC
76112938 AT
1 AT
76112940 GAATCATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (14 bp):
ATATACATAAACTC
Found at i:76113082 original size:19 final size:20
Alignment explanation
Indices: 76113058--76113096 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
76113048 CCGAATGTAC
76113058 TTTTCATATACA-CATATAT
1 TTTTCATATACATCATATAT
*
76113077 TTTTCATTTACATCATATAT
1 TTTTCATATACATCATATAT
76113097 GATTTGCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTTCATATACATCATATAT
Found at i:76113814 original size:28 final size:28
Alignment explanation
Indices: 76113776--76113850 Score: 141
Period size: 28 Copynumber: 2.7 Consensus size: 28
76113766 AGTGAATAAC
76113776 ACAGTCTGGGCCTAAGCCCAGATTGGTA
1 ACAGTCTGGGCCTAAGCCCAGATTGGTA
76113804 ACAGTCTGGGCCTAAGCCCAGATTGGTA
1 ACAGTCTGGGCCTAAGCCCAGATTGGTA
*
76113832 ACAGTCTGGGCCTGAGCCC
1 ACAGTCTGGGCCTAAGCCC
76113851 TATTCAGTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAGATTGGTA
Found at i:76113864 original size:28 final size:28
Alignment explanation
Indices: 76113776--76113925 Score: 124
Period size: 28 Copynumber: 5.2 Consensus size: 28
76113766 AGTGAATAAC
*
76113776 ACAGTCTGGGCCTAAGCCCAGATT-GGTA
1 ACAGTCTGGGCCTAAGCCC-GATTCAGTA
*
76113804 ACAGTCTGGGCCTAAGCCCAGATT-GGTA
1 ACAGTCTGGGCCTAAGCCC-GATTCAGTA
* *
76113832 ACAGTCTGGGCCTGAGCCCTATTCAGTATCA
1 ACAGTCTGGGCCTAAGCCCGATTCAG--T-A
* * *
76113863 GTACAGTCTGGGCCTTAGCCCTATACAGTA
1 --ACAGTCTGGGCCTAAGCCCGATTCAGTA
* * *
76113893 ACAGTGTGGGCCTAAGCCCAATGCAGTA
1 ACAGTCTGGGCCTAAGCCCGATTCAGTA
*
76113921 TCAGT
1 ACAGT
76113926 ACAGTGTAGT
Statistics
Matches: 106, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
27 3 0.03
28 75 0.71
30 2 0.02
31 2 0.02
33 24 0.23
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCGATTCAGTA
Found at i:76113874 original size:33 final size:33
Alignment explanation
Indices: 76113832--76113930 Score: 109
Period size: 33 Copynumber: 3.2 Consensus size: 33
76113822 CAGATTGGTA
* *
76113832 ACAGTCTGGGCCTGAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCTATACAGTATCAGT
*
76113865 ACAGTCTGGGCCTTAGCCCTATACAG--T-A--
1 ACAGTCTGGGCCTAAGCCCTATACAGTATCAGT
* * *
76113893 ACAGTGTGGGCCTAAGCCCAATGCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCTATACAGTATCAGT
76113926 ACAGT
1 ACAGT
76113931 GTAGTGCAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
28 22 0.40
30 2 0.04
31 2 0.04
33 29 0.53
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (33 bp):
ACAGTCTGGGCCTAAGCCCTATACAGTATCAGT
Found at i:76113883 original size:61 final size:61
Alignment explanation
Indices: 76113804--76113930 Score: 166
Period size: 61 Copynumber: 2.1 Consensus size: 61
76113794 CAGATTGGTA
** * * *
76113804 ACAGTCTGGGCCTAAGCCCAGAT-TGGTAACAGTCTGGGCCTGAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCC-GATACAGTAACAGTCTGGGCCTAAGCCCAATGCAGTATCAGT
* * *
76113865 ACAGTCTGGGCCTTAGCCCTATACAGTAACAGTGTGGGCCTAAGCCCAATGCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCGATACAGTAACAGTCTGGGCCTAAGCCCAATGCAGTATCAGT
76113926 ACAGT
1 ACAGT
76113931 GTAGTGCAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 2 0.04
61 55 0.96
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (61 bp):
ACAGTCTGGGCCTAAGCCCGATACAGTAACAGTCTGGGCCTAAGCCCAATGCAGTATCAGT
Found at i:76114307 original size:27 final size:27
Alignment explanation
Indices: 76114277--76114468 Score: 294
Period size: 27 Copynumber: 7.1 Consensus size: 27
76114267 GGCATAATCA
* * *
76114277 TCATTTTACCATATAGGGGTACTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
76114304 TCATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
76114331 TCATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
76114358 TCATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
76114385 TCATTTTACCCTACAGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
* **
76114412 TCATTTTACCCTACAGGGCTATTACAA
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
76114439 TCATTTTACCCTATAAGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
76114466 TCA
1 TCA
76114469 AATAACGACC
Statistics
Matches: 155, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:76116572 original size:41 final size:43
Alignment explanation
Indices: 76116479--76116627 Score: 119
Period size: 41 Copynumber: 3.5 Consensus size: 43
76116469 CAATGCTAAC
* *
76116479 ATCCCAGA-AATGGTCTTACATGCTATCACATATCGATGCCACT
1 ATCCCAGACAA-GGTCTTACATGCAATCAAATATCGATGCCACT
*
76116522 GTCCCAGACAAGGTCTTACATG-AATCAAATA-CGATGCCGA-T
1 ATCCCAGACAAGGTCTTACATGCAATCAAATATCGATGCC-ACT
* * * * * *
76116563 ATCCTAGACATGGTTTTACACGTAACCACATATATCGATGCCAAC-
1 ATCCCAGACAAGGTCTTACATGCAATCA-A-ATATCGATGCC-ACT
* *
76116608 GTCCCAGACATGGTCTTACA
1 ATCCCAGACAAGGTCTTACA
76116628 CGAGAACACA
Statistics
Matches: 86, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
41 25 0.29
42 12 0.14
43 19 0.22
44 5 0.06
45 25 0.29
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
ATCCCAGACAAGGTCTTACATGCAATCAAATATCGATGCCACT
Found at i:76116617 original size:45 final size:41
Alignment explanation
Indices: 76116480--76116630 Score: 124
Period size: 45 Copynumber: 3.5 Consensus size: 41
76116470 AATGCTAACA
* * * * *
76116480 TCCCAGAAATGGTCTTACATGCTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACG-AACCAAATATCGATGCCAC-G
* * * **
76116523 TCCCAGACAAGGTCTTACATGAATCAAATA-CGATGCCGATA
1 TCCCAGACATGGTCTTACACGAACCAAATATCGATGCC-ACG
* *
76116564 TCCTAGACATGGTTTTACACGTAACCACATATATCGATGCCAACG
1 TCCCAGACATGGTCTTACACG-AACCA-A-ATATCGATGCC-ACG
76116609 TCCCAGACATGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGA
76116631 GAACACATAT
Statistics
Matches: 87, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 24 0.28
42 12 0.14
43 20 0.23
44 4 0.05
45 27 0.31
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAACCAAATATCGATGCCACG
Found at i:76116638 original size:45 final size:43
Alignment explanation
Indices: 76116508--76116640 Score: 128
Period size: 45 Copynumber: 3.0 Consensus size: 43
76116498 ATGCTATCAC
* * *
76116508 ATATCGATGCCACTGTCCCAGACAAGGTCTTACATGAATCA-A-
1 ATATCGATGCCAC-GTCCCAGACATGGTCTTACACGAAACACAT
** * * *
76116550 ATA-CGATGCCGATATCCTAGACATGGTTTTACACGTAACCACAT
1 ATATCGATGCC-ACGTCCCAGACATGGTCTTACACG-AAACACAT
76116594 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAGAACACAT
1 ATATCGATGCC-ACGTCCCAGACATGGTCTTACACGA-AACACAT
76116639 AT
1 AT
76116641 TAGAAATCCT
Statistics
Matches: 72, Mismatches: 13, Indels: 9
0.77 0.14 0.10
Matches are distributed among these distances:
41 24 0.33
42 8 0.11
43 1 0.01
44 4 0.06
45 35 0.49
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
ATATCGATGCCACGTCCCAGACATGGTCTTACACGAAACACAT
Found at i:76127451 original size:13 final size:14
Alignment explanation
Indices: 76127435--76127464 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
76127425 ATGCTTGATG
76127435 TTAATTGAA-GTAA
1 TTAATTGAATGTAA
76127448 TTAATTGAATGTAA
1 TTAATTGAATGTAA
76127462 TTA
1 TTA
76127465 TCTATTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (14 bp):
TTAATTGAATGTAA
Found at i:76130248 original size:19 final size:18
Alignment explanation
Indices: 76130220--76130259 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
76130210 GAATACTTCC
76130220 ATAAACGATAACTTATTCT
1 ATAAACGATAACTTATT-T
*
76130239 ATAAATGATAACTTATTT
1 ATAAACGATAACTTATTT
76130257 ATA
1 ATA
76130260 GGCGGTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (18 bp):
ATAAACGATAACTTATTT
Found at i:76131521 original size:12 final size:12
Alignment explanation
Indices: 76131497--76131535 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
76131487 TTAAAAAGTT
76131497 TAAACAAATAAA
1 TAAACAAATAAA
76131509 TAAA-AAATGAAA
1 TAAACAAAT-AAA
*
76131521 TAAGCAAATAAA
1 TAAACAAATAAA
76131533 TAA
1 TAA
76131536 TTAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (12 bp):
TAAACAAATAAA
Found at i:76131529 original size:20 final size:18
Alignment explanation
Indices: 76131506--76131551 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
76131496 TTAAACAAAT
76131506 AAATAAAAAATGAAATAA
1 AAATAAAAAATGAAATAA
* *
76131524 GCAAATAAATAATTAAATAA
1 --AAATAAAAAATGAAATAA
76131544 AAATAAAA
1 AAATAAAA
76131552 TATAACAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (18 bp):
AAATAAAAAATGAAATAA
Found at i:76131541 original size:12 final size:12
Alignment explanation
Indices: 76131502--76131632 Score: 56
Period size: 12 Copynumber: 10.2 Consensus size: 12
76131492 AAGTTTAAAC
76131502 AAATAAATAA-A
1 AAATAAATAATA
**
76131513 AAATGAAATAAGC
1 AAAT-AAATAATA
*
76131526 AAATAAATAATT
1 AAATAAATAATA
76131538 AAATAAA-AATA
1 AAATAAATAATA
*
76131549 AAATATAACAAATTA
1 AAATA-AA-TAA-TA
76131564 CAAATGACAATAAT-
1 -AAAT-A-AATAATA
76131578 -AATAACATAATA
1 AAATAA-ATAATA
76131590 GAAATAATAATAATA
1 -AAAT-A-AATAATA
*
76131605 ATAATAAAGAATA
1 A-AATAAATAATA
*
76131618 ATAAT-AGTAATA
1 A-AATAAATAATA
76131630 AAA
1 AAA
76131633 ATAATATTAA
Statistics
Matches: 96, Mismatches: 9, Indels: 30
0.71 0.07 0.22
Matches are distributed among these distances:
10 1 0.01
11 20 0.21
12 30 0.31
13 15 0.16
14 7 0.07
15 13 0.14
16 7 0.07
17 3 0.03
ACGTcount: A:0.68, C:0.04, G:0.05, T:0.24
Consensus pattern (12 bp):
AAATAAATAATA
Found at i:76131580 original size:3 final size:3
Alignment explanation
Indices: 76131572--76131708 Score: 107
Period size: 3 Copynumber: 45.3 Consensus size: 3
76131562 TACAAATGAC
* *
76131572 AAT AAT AAT AA- CAT AAT AGA- AAT AAT AAT AAT AAT AAT AAAG AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT
* * * * * **
76131617 AAT AAT AGT AAT AAA AAT AAT ATT AAC AGT AAT AAT AAT GGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
76131665 AAAT AAT AGT AAT AAT AAT AAT AGT AAC AAT AGT AAC AAT AAT A
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
76131709 TATTAAATTA
Statistics
Matches: 101, Mismatches: 28, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
2 2 0.02
3 93 0.92
4 6 0.06
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:76133270 original size:89 final size:89
Alignment explanation
Indices: 76133159--76133659 Score: 322
Period size: 89 Copynumber: 5.5 Consensus size: 89
76133149 AGAGGTATAG
* * *
76133159 GACTTGTCACCTT-AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTGTCTTCAGTCTG
1 GACTTGT-AGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTGTCTTCAGTCTG
* * *
76133223 CTCTGCTGCAACTTTAGGGAGAGAA
65 CTCTACTGCAACTTCAGGGAGATAA
* * * ** *
76133248 GACTTGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATTTTCCATGAGAGAT-TTG
1 GACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA--TT--A-G-CTG-TCTTC
* * *
76133312 A-TCCGAC-CTACTGCAACTTCAGAGG-TATAG
59 AGTCTG-CTCTACTGCAACTTCAG-GGAGATAA
* * * * * *
76133342 GACTCGTCGTTTTAATAC-GCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTCAGTCTG
1 GACTTGTAGCTTCAAT-CTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTGTCTTCAGTCTG
* *
76133406 CTCTGCTGCAACTTCAAGGAGATAA
65 CTCTACTGCAACTTCAGGGAGATAA
** * * * * * * *
76133431 GACTTGTAATTTCAACCTACTCCATTACAACTTCAGGGAGATAAGGTT---TGTTTTGA-TCTGC
1 GACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTGTCTTCAGTCTGC
*
76133492 TCTACTGCAACTTCAGAGAGATAA
66 TCTACTGCAACTTCAGGGAGATAA
* * * * * * * *
76133516 GATCTGTAATTATAGCTTCAATCTGTTCCACTGCAACTTTAGAGAAATAAGATTCGCTATCTTTA
1 GA-C-----TTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTGTCTTCA
* *
76133581 GTCTGCTCCACTGCAACTTTAGGGAGATAA
60 GTCTGCTCTACTGCAACTTCAGGGAGATAA
* * * * *
76133611 GA-TTCGCCATCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGATT
1 GACTT-G-TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
76133660 TGTGAATTTA
Statistics
Matches: 309, Mismatches: 75, Indels: 55
0.70 0.17 0.13
Matches are distributed among these distances:
85 28 0.09
86 6 0.02
87 1 0.00
88 12 0.04
89 92 0.30
90 34 0.11
91 35 0.11
92 2 0.01
93 1 0.00
94 61 0.20
95 36 0.12
96 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (89 bp):
GACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTGTCTTCAGTCTGC
TCTACTGCAACTTCAGGGAGATAA
Found at i:76133276 original size:44 final size:45
Alignment explanation
Indices: 76133172--76133659 Score: 154
Period size: 45 Copynumber: 10.8 Consensus size: 45
76133162 TTGTCACCTT
* * * *
76133172 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTGTCTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGCTGGCTTC
* ** *
76133217 AGTCTGCTCTGCTGCAACTTTAGGGAGAGAAGACTT-G-TGGCTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGA-TTAGCTGGCTTC
* ** * *
76133261 AATCTGCTCCACTGCAACTTTAGGAAGATAAGATTTTCCATGAGAGATTT
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGA-TTAGC-T--G-GCTTC
* * * * * * * * * * *
76133311 GATCCGAC-CTACTGCAACTTCAGAGG-TATAGGACTCG-TCGTTTT
1 AATCTG-CTCCACTGCAACTTTAG-GGAGATAAGATTAGCTGGCTTC
* * **
76133355 AATAC-GCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTTCTTC
1 AAT-CTGCTCCACTGCAACTTTAGGGAGATAAGATTAGCTGGCTTC
* ** * * ***
76133400 AGTCTGCTCTGCTGCAACTTCAAGGAGATAAGACTT-G-TAATTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGA-TTAGCTGGCTTC
* * * * * * * *
76133444 AACCTACTCCATTACAACTTCAGGGAGATAAGGTT---T-GTTTT
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGCTGGCTTC
* * * * ** *
76133485 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTATAGCTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGA--T-T-A-GCTGGCTTC
* * * * ** *
76133535 AATCTGTTCCACTGCAACTTTAGAGAAATAAGATTCGCTATCTTT
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGCTGGCTTC
* * *** *
76133580 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGCCATCTTT
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGCTGGCTTC
* * *
76133625 AGTCTGCTCCGCTGCAACTTCAGGGAGATAAGATT
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATT
76133660 TGTGAATTTA
Statistics
Matches: 335, Mismatches: 84, Indels: 48
0.72 0.18 0.10
Matches are distributed among these distances:
41 28 0.08
42 1 0.00
43 6 0.02
44 95 0.28
45 136 0.41
46 4 0.01
47 3 0.01
48 1 0.00
49 3 0.01
50 56 0.17
51 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGCTGGCTTC
Found at i:76133475 original size:183 final size:183
Alignment explanation
Indices: 76133134--76133475 Score: 495
Period size: 183 Copynumber: 1.9 Consensus size: 183
76133124 GTTTAATTCC
* * * * *
76133134 ACCTACTGTAGCTTTAGAGGTATAGGACTTGTCACCTTAATCCGCTCCACTGCAACTTCAGGGAG
1 ACCTACTGCAACTTCAGAGGTATAGGACTCGTCACCTTAATACGCTCCACTGCAACTTCAGGGAG
* * ** *
76133199 ATAGGATTAGCTGTCTTCAGTCTGCTCTGCTGCAACTTTAGGGAGAGAAGACTTGTGGCTTCAAT
66 ATAGGATTAGCTGTCTTCAGTCTGCTCTGCTGCAACTTCAAGGAGAGAAGACTTGTAACTTCAAC
* * *
76133264 CTGCTCCACTGCAACTTTAGGAAGATAAGATTTTCCATGAGAGATTTGATCCG
131 CTACTCCACTACAACTTCAGGAAGATAAGATTTTCCATGAGAGATTTGATCCG
***
76133317 ACCTACTGCAACTTCAGAGGTATAGGACTCGTCGTTTTAATACGCTCCACTGCAACTTCAGGGAG
1 ACCTACTGCAACTTCAGAGGTATAGGACTCGTCACCTTAATACGCTCCACTGCAACTTCAGGGAG
* * *
76133382 ATAGGATTAGCTTTCTTCAGTCTGCTCTGCTGCAACTTCAAGGAGATAAGACTTGTAATTTCAAC
66 ATAGGATTAGCTGTCTTCAGTCTGCTCTGCTGCAACTTCAAGGAGAGAAGACTTGTAACTTCAAC
* *
76133447 CTACTCCATTACAACTTCAGGGAGATAAG
131 CTACTCCACTACAACTTCAGGAAGATAAG
76133476 GTTTGTTTTG
Statistics
Matches: 138, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
183 138 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (183 bp):
ACCTACTGCAACTTCAGAGGTATAGGACTCGTCACCTTAATACGCTCCACTGCAACTTCAGGGAG
ATAGGATTAGCTGTCTTCAGTCTGCTCTGCTGCAACTTCAAGGAGAGAAGACTTGTAACTTCAAC
CTACTCCACTACAACTTCAGGAAGATAAGATTTTCCATGAGAGATTTGATCCG
Found at i:76133593 original size:45 final size:45
Alignment explanation
Indices: 76133537--76133659 Score: 192
Period size: 45 Copynumber: 2.7 Consensus size: 45
76133527 ATAGCTTCAA
* * * *
76133537 TCTGTTCCACTGCAACTTTAGAGAAATAAGATTCGCTATCTTTAG
1 TCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGCCATCTTTAG
76133582 TCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGCCATCTTTAG
1 TCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGCCATCTTTAG
* *
76133627 TCTGCTCCGCTGCAACTTCAGGGAGATAAGATT
1 TCTGCTCCACTGCAACTTTAGGGAGATAAGATT
76133660 TGTGAATTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 72 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGCCATCTTTAG
Found at i:76134210 original size:12 final size:12
Alignment explanation
Indices: 76134193--76134217 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76134183 ATCAAAGAAA
76134193 GCAAGCATTGTT
1 GCAAGCATTGTT
76134205 GCAAGCATTGTT
1 GCAAGCATTGTT
76134217 G
1 G
76134218 GAATACAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (12 bp):
GCAAGCATTGTT
Found at i:76134534 original size:3 final size:3
Alignment explanation
Indices: 76134513--76134552 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
76134503 CCTTTCCATT
* *
76134513 TTC TTA TTC TTC TTA TTC TTC TTC TTC TTC TTC TT- TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
76134553 GGAAAAGTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.05, C:0.25, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:76137844 original size:24 final size:24
Alignment explanation
Indices: 76137817--76137866 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
76137807 TTCTAATTGT
*
76137817 TCTTGCATCT-GTGTCTGCATTTGC
1 TCTTGCATCTCCT-TCTGCATTTGC
*
76137841 TCTTGCATTTCCTTCTGCATTTGC
1 TCTTGCATCTCCTTCTGCATTTGC
76137865 TC
1 TC
76137867 CAATCTTTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.08, C:0.28, G:0.16, T:0.48
Consensus pattern (24 bp):
TCTTGCATCTCCTTCTGCATTTGC
Found at i:76137847 original size:12 final size:13
Alignment explanation
Indices: 76137830--76137866 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
76137820 TGCATCTGTG
76137830 TCTGCATTTGCTC
1 TCTGCATTTGCTC
*
76137843 T-TGCATTTCCT-
1 TCTGCATTTGCTC
76137854 TCTGCATTTGCTC
1 TCTGCATTTGCTC
76137867 CAATCTTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
11 1 0.05
12 18 0.90
13 1 0.05
ACGTcount: A:0.08, C:0.30, G:0.14, T:0.49
Consensus pattern (13 bp):
TCTGCATTTGCTC
Found at i:76139961 original size:17 final size:17
Alignment explanation
Indices: 76139900--76139961 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
76139890 AAACATGGCT
76139900 AACAATATAAAAA-TATA
1 AACAA-ATAAAAAGTATA
* *
76139917 AATAAATAAACAAGTAAA
1 AACAAATAAA-AAGTATA
* * *
76139935 AACTATTAAAAAGTTTA
1 AACAAATAAAAAGTATA
76139952 AACAAATAAA
1 AACAAATAAA
76139962 TAAAAAATGA
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
16 5 0.15
17 19 0.56
18 10 0.29
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (17 bp):
AACAAATAAAAAGTATA
Found at i:76139964 original size:4 final size:4
Alignment explanation
Indices: 76139950--76140004 Score: 51
Period size: 4 Copynumber: 14.0 Consensus size: 4
76139940 TTAAAAAGTT
* * * *
76139950 TAAA CAAA TAAA TAAA -AAA TGAAA TAAG CAAA TAAA TAAG TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA
76139998 -AAA TAAA
1 TAAA TAAA
76140005 ATATAACAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
3 6 0.15
4 30 0.75
5 4 0.10
ACGTcount: A:0.73, C:0.04, G:0.05, T:0.18
Consensus pattern (4 bp):
TAAA
Found at i:76140032 original size:3 final size:3
Alignment explanation
Indices: 76140024--76140146 Score: 93
Period size: 3 Copynumber: 40.0 Consensus size: 3
76140014 ATTACAAATG
* * * * * *
76140024 ATA ATA ATA ATA ATA ATA ACA ATA ATA ACAA AGA ACA AAA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA
* * * * * *
76140070 ATA AAA ATA ATA TTA ACA GTA ATA ATA ATG GTA ATA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* *
76140116 ATA ATAA ATA ATA ATA ATA GTA ACA ATA ATA
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
76140147 TATTAAATTA
Statistics
Matches: 92, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
3 84 0.91
4 8 0.09
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:76146360 original size:16 final size:15
Alignment explanation
Indices: 76146326--76146370 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
76146316 ATAGGGACCT
*
76146326 TTATAATATACACTA
1 TTATAATATACAATA
*
76146341 TTATAATATTCAAATA
1 TTATAATATAC-AATA
76146357 TTATAATATACAAT
1 TTATAATATACAAT
76146371 TAAGTTTGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (15 bp):
TTATAATATACAATA
Found at i:76152384 original size:46 final size:46
Alignment explanation
Indices: 76152213--76152477 Score: 227
Period size: 46 Copynumber: 5.6 Consensus size: 46
76152203 CATTGCTGTT
* * * *
76152213 ATGTGAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATT
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-G
* * * * *
76152259 ATGAAATGCTAGTGTAAGACATGTCTGGGACATGTATCGGCATTGAAAG
1 ATGTAA-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG--AG
* * *
76152308 A-GACGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAG
1 ATG--TA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
*
76152356 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATC-GACTACGAG
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAG
* * *
76152402 ATGT--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAC-AGAT
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCGAG
*
76152446 ATGTGAGAGCCAGTGTAAGACCATATCTGGGA
1 ATGT-A-AGCCAGTGTAAGA-CATGTCTGGGA
76152478 TATGGCATTG
Statistics
Matches: 179, Mismatches: 24, Indels: 29
0.77 0.10 0.12
Matches are distributed among these distances:
44 36 0.20
45 4 0.02
46 43 0.24
47 32 0.18
48 15 0.08
49 12 0.07
50 36 0.20
51 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (46 bp):
ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
Found at i:76163614 original size:12 final size:13
Alignment explanation
Indices: 76163578--76163615 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
76163568 AAATATTTGA
76163578 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
76163591 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
76163605 CTTG-TCTTAAT
1 CTTGTTCTTAAT
76163616 ATTCCAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:76165736 original size:44 final size:44
Alignment explanation
Indices: 76165673--76165763 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
76165663 CGCCTCTCTC
76165673 CTAGCAAAGTTTGGTTTGGTCCCTTGCAATGCATGAATTTTTAA
1 CTAGCAAAGTTTGGTTTGGTCCCTTGCAATGCATGAATTTTTAA
76165717 CTAGCAAAGTTTGGTTTGGTCCCTTGCAATGCATGAATTTTTAA
1 CTAGCAAAGTTTGGTTTGGTCCCTTGCAATGCATGAATTTTTAA
76165761 CTA
1 CTA
76165764 TCTTGCATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.38
Consensus pattern (44 bp):
CTAGCAAAGTTTGGTTTGGTCCCTTGCAATGCATGAATTTTTAA
Found at i:76166664 original size:27 final size:27
Alignment explanation
Indices: 76166624--76166736 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
76166614 TGTCTCATTG
*
76166624 GACTATCTCGTGTTTAACATCCTGTCA
1 GACTATCCCGTGTTTAACATCCTGTCA
* * *
76166651 GACTATCCCTTGTTTAGCATCCTATCA
1 GACTATCCCGTGTTTAACATCCTGTCA
* *
76166678 GACTATCCCATGTTTAACATCCTGTTA
1 GACTATCCCGTGTTTAACATCCTGTCA
* * *
76166705 GACTATTCAGTGTTTAACGT-CTCGTCA
1 GACTATCCCGTGTTTAACATCCT-GTCA
76166732 GACTA
1 GACTA
76166737 ACTATGATGC
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.03
27 70 0.97
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (27 bp):
GACTATCCCGTGTTTAACATCCTGTCA
Found at i:76167339 original size:22 final size:20
Alignment explanation
Indices: 76167281--76167341 Score: 52
Period size: 22 Copynumber: 2.9 Consensus size: 20
76167271 TACCAAATCA
76167281 TAAATA-ATCAAAAATTTAAT
1 TAAATATAT-AAAAATTTAAT
* * *
76167301 TAAAAATATTTACAATTATAATT
1 TAAATATA-TAAAAATT-TAA-T
76167324 TAAATATATAAAAATTTA
1 TAAATATATAAAAATTTA
76167342 TCAAAACCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 5 0.16
21 8 0.26
22 10 0.32
23 8 0.26
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAATATATAAAAATTTAAT
Found at i:76173260 original size:24 final size:24
Alignment explanation
Indices: 76173233--76173278 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
76173223 GAATTTAACA
76173233 TTCAAATCA-GCACACATAGTGCCT
1 TTCAAAT-ATGCACACATAGTGCCT
* *
76173257 TTCAACTATGCACACGTAGTGC
1 TTCAAATATGCACACATAGTGC
76173279 TAGTATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (24 bp):
TTCAAATATGCACACATAGTGCCT
Found at i:76175252 original size:13 final size:13
Alignment explanation
Indices: 76175234--76175259 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76175224 ACTGTGGATT
76175234 TTGGTTTTAAAGA
1 TTGGTTTTAAAGA
76175247 TTGGTTTTAAAGA
1 TTGGTTTTAAAGA
76175260 AATGATTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
TTGGTTTTAAAGA
Found at i:76183190 original size:29 final size:29
Alignment explanation
Indices: 76183155--76183228 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
76183145 TAATCAACCG
*
76183155 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
76183184 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
76183213 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
76183229 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:76191331 original size:29 final size:29
Alignment explanation
Indices: 76191297--76191370 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
76191287 TAATCAACCG
*
76191297 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
76191326 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
76191355 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
76191371 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:76204144 original size:11 final size:11
Alignment explanation
Indices: 76204111--76204146 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
76204101 TGAATTGTAG
*
76204111 TAGTTAACAGA
1 TAGTTAACAGT
76204122 TAGTTAATCAGT
1 TAGTTAA-CAGT
76204134 TAGTTAACAGT
1 TAGTTAACAGT
76204145 TA
1 TA
76204147 CTCATCATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (11 bp):
TAGTTAACAGT
Found at i:76211734 original size:70 final size:70
Alignment explanation
Indices: 76211621--76212260 Score: 652
Period size: 70 Copynumber: 9.1 Consensus size: 70
76211611 TCTTCCCAAA
* * * * * * * *
76211621 AAAATAGTTAGCGAGACCTCAATCTCTCACCTGTGATCTTAAGGCTTGTAGGTTCAATACCGCAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
76211686 CCTCC
66 CCTCC
* * * * * * * * * * *
76211691 AAAATAGATAGCGAGAGCTTAAGTTCACAGCTATAATATTAAGGCTTGCATGTTCAACACCGTAA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
*
76211756 CCTCT
66 CCTCC
* * * * * * * *
76211761 AAAAAAATTAGCGAGAGCTCAAGCTCCCAACTGTGATTTTAGGGCTCGTAAGTTCAACATCATAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
76211826 CCTCC
66 CCTCC
* * * *
76211831 AAAATAGTTAGTGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAACACAGTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
76211896 CCTCC
66 CCTCC
* * * *
76211901 AAAATAGTTAGTGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCACAGGTTCAACACCGTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
*
76211966 CCTCT
66 CCTCC
* ** * *
76211971 AAAATAGTTAGCGATAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCACAGGTTCAACACCTTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
76212036 CCTCC
66 CCTCC
* ** * * ** *
76212041 AAAATAGTTAGCAAGAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCGCAAGTTCAATACCACAA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
76212106 CCTCC
66 CCTCC
** * * * **
76212111 AAAATAGTTAGCGAGAGCTCAAGCTCTTAGA-TCTGATCTTAAGGCTCGCAAGTTCAATACCACA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCA-ACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTA
* *
76212175 ACCTCT
65 GCCTCC
* * * * ** *
76212181 AAAACAGTTAGCGAGAGCTCAAGCTCTCAGCTGTGATCTTAAGGCTCACAAATTCAAGCACTGTA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAA-CACCGTA
*
76212246 GCCTTC
65 GCCTCC
76212252 AAAATAGTT
1 AAAATAGTT
76212261 GAAGCTCGTG
Statistics
Matches: 480, Mismatches: 87, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
70 466 0.97
71 14 0.03
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (70 bp):
AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
CCTCC
Found at i:76211984 original size:210 final size:210
Alignment explanation
Indices: 76211621--76212260 Score: 764
Period size: 210 Copynumber: 3.0 Consensus size: 210
76211611 TCTTCCCAAA
* * * ** * *
76211621 AAAATAGTTAGCGAGACCTCAATCTCTCACCTGTGATCTTAAGGCTTGTAGGTTCAATACCGCAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATACAGCAG
* * * * * * * *
76211686 CCTCCAAAATAGATAGCGAGAGCTTAAGTTCAC-AGCTATAATATTAAGGCTTGCATGTTCAACA
66 CCTCCAAAATAGTTAGCGAGAGCTCAAGCTC-CTAACTATGATCTTAAGGCTCGCAAGTTCAACA
* * * * **
76211750 CCGTAACCTCTAAAAAAATTAGCGAGAGCTCAAGCTCCCAACTGTGATTTTAGGGCTCGTAAGTT
130 CCGTAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCACAAGTT
*
76211815 CAACATCATAGCCTCC
195 CAACACCATAGCCTCC
* * *
76211831 AAAATAGTTAGTGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAACACAGTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATACAGCAG
* * *
76211896 CCTCCAAAATAGTTAGTGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCACAGGTTCAACAC
66 CCTCCAAAATAGTTAGCGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCGCAAGTTCAACAC
* * * * *
76211961 CGTAGCCTCTAAAATAGTTAGCGATAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCACAGGTTC
131 CGTAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCACAAGTTC
*
76212026 AACACCTTAGCCTCC
196 AACACCATAGCCTCC
* ** * *
76212041 AAAATAGTTAGCAAGAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCGCAAGTTCAATACCA-CA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATA-CAGCA
* * * *
76212105 ACCTCCAAAATAGTTAGCGAGAGCTCAAGCTCTTAGA-TCTGATCTTAAGGCTCGCAAGTTCAAT
65 GCCTCCAAAATAGTTAGCGAGAGCTCAAGCTCCTA-ACTATGATCTTAAGGCTCGCAAGTTCAAC
** * * *
76212169 ACCACAACCTCTAAAACAGTTAGCGAGAGCTCAAGCTCTCAGCTGTGATCTTAAGGCTCACAAAT
129 ACCGTAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCACAAGT
** *
76212234 TCAAGCACTGTAGCCTTC
194 TCAA-CACCATAGCCTCC
76212252 AAAATAGTT
1 AAAATAGTT
76212261 GAAGCTCGTG
Statistics
Matches: 366, Mismatches: 60, Indels: 7
0.85 0.14 0.02
Matches are distributed among these distances:
209 1 0.00
210 343 0.94
211 22 0.06
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (210 bp):
AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATACAGCAG
CCTCCAAAATAGTTAGCGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCGCAAGTTCAACAC
CGTAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCACAAGTTC
AACACCATAGCCTCC
Found at i:76212364 original size:25 final size:25
Alignment explanation
Indices: 76212334--76212383 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
76212324 ATTTGCTTAA
76212334 GTTAAAATTTTGCTCAAGTTCACGG
1 GTTAAAATTTTGCTCAAGTTCACGG
76212359 GTTAAAATTTTGCTCAAGTTCACGG
1 GTTAAAATTTTGCTCAAGTTCACGG
76212384 AGAAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (25 bp):
GTTAAAATTTTGCTCAAGTTCACGG
Found at i:76215444 original size:20 final size:20
Alignment explanation
Indices: 76215403--76215452 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
76215393 TGTCAATCCT
* *
76215403 ATGAATAGTGGGGTTAAGTC
1 ATGAATAGTGGAGTGAAGTC
76215423 ATGAATAGTGGAGTCGAA-TC
1 ATGAATAGTGGAGT-GAAGTC
*
76215443 ATGAACAGTG
1 ATGAATAGTG
76215453 ATAATATGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (20 bp):
ATGAATAGTGGAGTGAAGTC
Found at i:76218227 original size:19 final size:18
Alignment explanation
Indices: 76218199--76218238 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
76218189 GAATACTTCC
76218199 ATAAACGATAACTTATTCT
1 ATAAACGATAACTTATT-T
*
76218218 ATAAATGATAACTTATTT
1 ATAAACGATAACTTATTT
76218236 ATA
1 ATA
76218239 GGCGGTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (18 bp):
ATAAACGATAACTTATTT
Found at i:76219501 original size:12 final size:12
Alignment explanation
Indices: 76219477--76219515 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
76219467 TTAAAAAGTT
76219477 TAAACAAATAAA
1 TAAACAAATAAA
76219489 TAAA-AAATGAAA
1 TAAACAAAT-AAA
*
76219501 TAAGCAAATAAA
1 TAAACAAATAAA
76219513 TAA
1 TAA
76219516 TTAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (12 bp):
TAAACAAATAAA
Found at i:76219509 original size:20 final size:18
Alignment explanation
Indices: 76219486--76219531 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
76219476 TTAAACAAAT
76219486 AAATAAAAAATGAAATAA
1 AAATAAAAAATGAAATAA
* *
76219504 GCAAATAAATAATTAAATAA
1 --AAATAAAAAATGAAATAA
76219524 AAATAAAA
1 AAATAAAA
76219532 TATAACAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (18 bp):
AAATAAAAAATGAAATAA
Found at i:76219521 original size:12 final size:12
Alignment explanation
Indices: 76219482--76219612 Score: 56
Period size: 12 Copynumber: 10.2 Consensus size: 12
76219472 AAGTTTAAAC
76219482 AAATAAATAA-A
1 AAATAAATAATA
**
76219493 AAATGAAATAAGC
1 AAAT-AAATAATA
*
76219506 AAATAAATAATT
1 AAATAAATAATA
76219518 AAATAAA-AATA
1 AAATAAATAATA
*
76219529 AAATATAACAAATTA
1 AAATA-AA-TAA-TA
76219544 CAAATGACAATAAT-
1 -AAAT-A-AATAATA
76219558 -AATAACATAATA
1 AAATAA-ATAATA
76219570 GAAATAATAATAATA
1 -AAAT-A-AATAATA
*
76219585 ATAATAAAGAATA
1 A-AATAAATAATA
*
76219598 ATAAT-AGTAATA
1 A-AATAAATAATA
76219610 AAA
1 AAA
76219613 ATAATATTAA
Statistics
Matches: 96, Mismatches: 9, Indels: 30
0.71 0.07 0.22
Matches are distributed among these distances:
10 1 0.01
11 20 0.21
12 30 0.31
13 15 0.16
14 7 0.07
15 13 0.14
16 7 0.07
17 3 0.03
ACGTcount: A:0.68, C:0.04, G:0.05, T:0.24
Consensus pattern (12 bp):
AAATAAATAATA
Found at i:76219560 original size:3 final size:3
Alignment explanation
Indices: 76219552--76219688 Score: 107
Period size: 3 Copynumber: 45.3 Consensus size: 3
76219542 TACAAATGAC
* *
76219552 AAT AAT AAT AA- CAT AAT AGA- AAT AAT AAT AAT AAT AAT AAAG AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT
* * * * * **
76219597 AAT AAT AGT AAT AAA AAT AAT ATT AAC AGT AAT AAT AAT GGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
76219645 AAAT AAT AGT AAT AAT AAT AAT AGT AAC AAT AGT AAC AAT AAT A
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
76219689 TATTAAATTA
Statistics
Matches: 101, Mismatches: 28, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
2 2 0.02
3 93 0.92
4 6 0.06
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Done.