Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 242 of 325
Found at i:76574015 original size:26 final size:26
Alignment explanation
Indices: 76573979--76574062 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
76573969 TATGAAATTC
76573979 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
76574005 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
76574031 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
76574057 TTATCA
1 TTATCA
76574063 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:76578083 original size:12 final size:12
Alignment explanation
Indices: 76578062--76578094 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
76578052 TAGACACATG
76578062 GGCC-TGTGGTC
1 GGCCGTGTGGTC
76578073 GGCCGTGTGGTC
1 GGCCGTGTGGTC
76578085 GGCCGTGTGG
1 GGCCGTGTGG
76578095 CCTAGTCTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.00, C:0.24, G:0.52, T:0.24
Consensus pattern (12 bp):
GGCCGTGTGGTC
Found at i:76580684 original size:26 final size:26
Alignment explanation
Indices: 76580653--76580705 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
76580643 TGTGAAAAAG
*
76580653 AAAGATGGCACGATGTGAATGTGTAT
1 AAAGATGGCACGATGAGAATGTGTAT
76580679 AAAGATGGCACGATGAGAATGTGTAT
1 AAAGATGGCACGATGAGAATGTGTAT
76580705 A
1 A
76580706 GATTACAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.30, T:0.25
Consensus pattern (26 bp):
AAAGATGGCACGATGAGAATGTGTAT
Found at i:76583180 original size:429 final size:429
Alignment explanation
Indices: 76582381--76584095 Score: 3322
Period size: 429 Copynumber: 4.0 Consensus size: 429
76582371 AACTTGCTGA
* * *
76582381 GTTGTATATTTATCAGATTATGAGGTTGCACGATGTAACTATTTCTATTGTTGGAGATAGAGATC
1 GTTGTATATTTCTCAGATTATGAGGTTGCACGATGTACCTATTTCTATTGTTTGAGATAGAGATC
*
76582446 CAAGGTTTACATCGCAGTTTTGGAAGAAACTACAAGATGCATTAGGTACAAAGCTACACTTTAGT
66 CAAGGTTTACATCGCAGTTTTGGAAGAAACTACAAGATGCATTAGGTACAAAGCTACACTTCAGT
76582511 ACTGCATTTCATTCACAAATAGATGGTCAATCCGAGCGAGTTATTCAGATACTTGAGGATATGTT
131 ACTGCATTTCATTCACAAATAGATGGTCAATCCGAGCGAGTTATTCAGATACTTGAGGATATGTT
*
76582576 GAGATGTTGCATACTTGAGTTCGTAAGTACATGGGAAAAGTATTTGCCATTGATTGAATTCACGT
196 GAGATGTTGCATACTTGAGTTCGTAAGTACGTGGGAAAAGTATTTGCCATTGATTGAATTCACGT
76582641 ATAATAACAGTTTTCAATCGAGCATTAAAATGGCACCGTATGAAGATTTATGTGGTCGAAAATGT
261 ATAATAACAGTTTTCAATCGAGCATTAAAATGGCACCGTATGAAGATTTATGTGGTCGAAAATGT
76582706 AGAACACTGTTGTACTAGACTGAGCTTAGCAAGAATAAGATCCACAGGGTTGATATGATTAGAGA
326 AGAACACTGTTGTACTAGACTGAGCTTAGCAAGAATAAGATCCACAGGGTTGATATGATTAGAGA
76582771 GACTGAAGAAAAAGTGAAAGTGATTCGTGATAGTTTGAG
391 GACTGAAGAAAAAGTGAAAGTGATTCGTGATAGTTTGAG
*
76582810 GTTGTATATTTCTCAGATTATGAGGTTGCACGGTGTACCTATTTCTATTGTTTGAGATAGAGATC
1 GTTGTATATTTCTCAGATTATGAGGTTGCACGATGTACCTATTTCTATTGTTTGAGATAGAGATC
76582875 CAAGGTTTACATCGCAGTTTTGGAAGAAACTACAAGATGCATTAGGTACAAAGCTACACTTCAGT
66 CAAGGTTTACATCGCAGTTTTGGAAGAAACTACAAGATGCATTAGGTACAAAGCTACACTTCAGT
76582940 ACTGCATTTCATTCACAAATAGATGGTCAATCCGAGCGAGTTATTCAGATACTTGAGGATATGTT
131 ACTGCATTTCATTCACAAATAGATGGTCAATCCGAGCGAGTTATTCAGATACTTGAGGATATGTT
76583005 GAGATGTTGCATACTTGAGTTCGTAAGTACGTGGGAAAAGTATTTGCCATTGATTGAATTCACGT
196 GAGATGTTGCATACTTGAGTTCGTAAGTACGTGGGAAAAGTATTTGCCATTGATTGAATTCACGT
76583070 ATAATAACAGTTTTCAATCGAGCATTAAAATGGCACCGTATGAAGATTTATGTGGTCGAAAATGT
261 ATAATAACAGTTTTCAATCGAGCATTAAAATGGCACCGTATGAAGATTTATGTGGTCGAAAATGT
76583135 AGAACACTGTTGTACTAGACTGAGCTTAGCAAGAATAAGATCCACAGGGTTGATATGATTAGAGA
326 AGAACACTGTTGTACTAGACTGAGCTTAGCAAGAATAAGATCCACAGGGTTGATATGATTAGAGA
76583200 GACTGAAGAAAAAGTGAAAGTGATTCGTGATAGTTTGAG
391 GACTGAAGAAAAAGTGAAAGTGATTCGTGATAGTTTGAG
76583239 GTTGTATATTTCTCAGATTATGAGGTTGCACGATGTACCTATTTCTATTGTTTGAGATAGAGATC
1 GTTGTATATTTCTCAGATTATGAGGTTGCACGATGTACCTATTTCTATTGTTTGAGATAGAGATC
76583304 CAAGGTTTACATCGCAGTTTTGGAAGAAACTACAAGATGCATTAGGTACAAAGCTACACTTCAGT
66 CAAGGTTTACATCGCAGTTTTGGAAGAAACTACAAGATGCATTAGGTACAAAGCTACACTTCAGT
76583369 ACTGCATTTCATTCACAAATAGATGGTCAATCCGAGCGAGTTATTCAGATACTTGAGGATATGTT
131 ACTGCATTTCATTCACAAATAGATGGTCAATCCGAGCGAGTTATTCAGATACTTGAGGATATGTT
76583434 GAGATGTTGCATACTTGAGTTCGTAAGTACGTGGGAAAAGTATTTGCCATTGATTGAATTCACGT
196 GAGATGTTGCATACTTGAGTTCGTAAGTACGTGGGAAAAGTATTTGCCATTGATTGAATTCACGT
76583499 ATAATAACAGTTTTCAATCGAGCATTAAAATGGCACCGTATGAAGATTTATGTGGTCGAAAATGT
261 ATAATAACAGTTTTCAATCGAGCATTAAAATGGCACCGTATGAAGATTTATGTGGTCGAAAATGT
* *
76583564 AGAACACTGTTGTACTAGATTGAGCTTAGCAAGAGTAAGATCCACAGGGTTGATATGATTAGAGA
326 AGAACACTGTTGTACTAGACTGAGCTTAGCAAGAATAAGATCCACAGGGTTGATATGATTAGAGA
76583629 GACTGAAGAAAAAGTGAAAGTGATTCGTGATAGTTTGAG
391 GACTGAAGAAAAAGTGAAAGTGATTCGTGATAGTTTGAG
*
76583668 GTTGTATATTTCTCAGATTATGAGGTTGCACGGTGTACCTATTTCTATTGTTTGAGATAGAGATC
1 GTTGTATATTTCTCAGATTATGAGGTTGCACGATGTACCTATTTCTATTGTTTGAGATAGAGATC
76583733 CAAGGTTTACATCGCAGTTTTGGAAGAAACTACAAGATGCATTAGGTACAAAGCTACACTTCAGT
66 CAAGGTTTACATCGCAGTTTTGGAAGAAACTACAAGATGCATTAGGTACAAAGCTACACTTCAGT
* *
76583798 ACTGCATTTCATTCACAAATAGATGGTCAATCCAAACGAGTTATTCAGATACTTGAGGATATGTT
131 ACTGCATTTCATTCACAAATAGATGGTCAATCCGAGCGAGTTATTCAGATACTTGAGGATATGTT
76583863 GAGATGTTGCATACTTGAGTTCGTAAGTACGTGGGAAAAGTATTTGCCATTGATTGAATTCACGT
196 GAGATGTTGCATACTTGAGTTCGTAAGTACGTGGGAAAAGTATTTGCCATTGATTGAATTCACGT
*
76583928 ATAATAACAGTTTTCAATCGAGCATTAAAATGGCACTGTATGAAGATTTATGTGGTCGAAAATGT
261 ATAATAACAGTTTTCAATCGAGCATTAAAATGGCACCGTATGAAGATTTATGTGGTCGAAAATGT
76583993 AGAACACTGTTGTACTAGACTGAGCTTAGCAAGAATAAGATCCACAGGGTTGATATGATTAGAGA
326 AGAACACTGTTGTACTAGACTGAGCTTAGCAAGAATAAGATCCACAGGGTTGATATGATTAGAGA
76584058 GACTGAAGAAAAAGTGAAAGTGATTCGTGATAGTTTGA
391 GACTGAAGAAAAAGTGAAAGTGATTCGTGATAGTTTGA
76584096 AACCAGTGTC
Statistics
Matches: 1271, Mismatches: 15, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
429 1271 1.00
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (429 bp):
GTTGTATATTTCTCAGATTATGAGGTTGCACGATGTACCTATTTCTATTGTTTGAGATAGAGATC
CAAGGTTTACATCGCAGTTTTGGAAGAAACTACAAGATGCATTAGGTACAAAGCTACACTTCAGT
ACTGCATTTCATTCACAAATAGATGGTCAATCCGAGCGAGTTATTCAGATACTTGAGGATATGTT
GAGATGTTGCATACTTGAGTTCGTAAGTACGTGGGAAAAGTATTTGCCATTGATTGAATTCACGT
ATAATAACAGTTTTCAATCGAGCATTAAAATGGCACCGTATGAAGATTTATGTGGTCGAAAATGT
AGAACACTGTTGTACTAGACTGAGCTTAGCAAGAATAAGATCCACAGGGTTGATATGATTAGAGA
GACTGAAGAAAAAGTGAAAGTGATTCGTGATAGTTTGAG
Found at i:76585982 original size:47 final size:47
Alignment explanation
Indices: 76585923--76586053 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
76585913 GTGCAAATGA
*
76585923 TACCTTGATTTGGCTATAGGCCATGGTATAGGTA-TTCAAAGAGGAGT
1 TACCTTGATTTGGCTATAGGCCATGGTATAGGTACTTC-AAGAGAAGT
* ** *
76585970 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTTCGTGATAAGT
1 TACCTTGATTTGGCTATAGGCCATGGTATAGGTACTTCAAGAGAAGT
* * * *
76586017 TACCTTGATTTGACTATTGGTCATGGTATATGTACTT
1 TACCTTGATTTGGCTATAGGCCATGGTATAGGTACTT
76586054 ATTGATAGAG
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 70 0.96
48 3 0.04
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (47 bp):
TACCTTGATTTGGCTATAGGCCATGGTATAGGTACTTCAAGAGAAGT
Found at i:76587490 original size:48 final size:48
Alignment explanation
Indices: 76587388--76587666 Score: 274
Period size: 48 Copynumber: 5.8 Consensus size: 48
76587378 GTAAGATGCC
* * * * * * * *
76587388 GATGCTATGTCCCAGACATGGTCTTACACTAGCTCCCGTAAC-AATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ACTAAGGCT
* * * *
76587436 AATGCCATGTTCCAAACATAGTCTTACATTGGCTCACATACTGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATACTAAGGCT
* * * * * * *
76587484 GATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATAATAATGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATACTAAGGCT
* * * *
76587532 GATGCCATGTTCCAAACATGGTCTTTCACTGGCTCACATATTGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATACTAAGGCT
* * * * *
76587580 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAAC-AATGTT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ACTAAGGCT
76587628 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
76587667 GTACCCTAAC
Statistics
Matches: 186, Mismatches: 43, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
47 2 0.01
48 183 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATACTAAGGCT
Found at i:76587556 original size:96 final size:96
Alignment explanation
Indices: 76587385--76587666 Score: 438
Period size: 96 Copynumber: 2.9 Consensus size: 96
76587375 AGGGTAAGAT
* * * **
76587385 GCCGATGCTATGTCCCAGACATGGTCTTACACTAGCTCCCGTAACAATGCCAATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCTGATGCCATGTTCCA
* *
76587450 AACATAGTCTTACATTGGCTCACATACTGAG
66 AACATGGTCTTACACTGGCTCACATACTGAG
* * *
76587481 GCTGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATAATAATGCTGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCTGATGCCATGTTCCA
* *
76587546 AACATGGTCTTTCACTGGCTCACATATTGAG
66 AACATGGTCTTACACTGGCTCACATACTGAG
* *
76587577 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGTTGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCTGATGCCATGTTCCA
76587642 AACATGGTCTTACACTGGCTCACAT
66 AACATGGTCTTACACTGGCTCACAT
76587667 GTACCCTAAC
Statistics
Matches: 168, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 168 1.00
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCTGATGCCATGTTCCA
AACATGGTCTTACACTGGCTCACATACTGAG
Found at i:76590303 original size:26 final size:26
Alignment explanation
Indices: 76590274--76590324 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
76590264 ATTGTTATAT
76590274 GGCTCTTCGTGAGCTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * *
76590300 GGCTCTTTGTGATCTTCCTGATTAA
1 GGCTCTTCGTGAGCTTCCCGATTAA
76590325 TGGATATTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCGATTAAA
Found at i:76590423 original size:48 final size:47
Alignment explanation
Indices: 76590313--76590424 Score: 109
Period size: 48 Copynumber: 2.3 Consensus size: 47
76590303 TCTTTGTGAT
* * *
76590313 CTTCCTGATTAATGGATATTCAGAGCTGCCTTATACGGCTCGCTTAAA
1 CTTCCTGATT-ATGGATATTCAGAGCTCCCTTATACGGCTCACATAAA
* * * * *
76590361 CTTCCTAATATATGGCTATTCAGAGCTACCCATTAT-TGGCTCACATGAG
1 CTTCCTGAT-TATGGATATTCAGAGCT-CCC-TTATACGGCTCACATAAA
76590410 CTTCCTGATTATGGA
1 CTTCCTGATTATGGA
76590425 ACTTATGAGC
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
48 28 0.55
49 19 0.37
50 4 0.08
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (47 bp):
CTTCCTGATTATGGATATTCAGAGCTCCCTTATACGGCTCACATAAA
Found at i:76593256 original size:63 final size:63
Alignment explanation
Indices: 76593113--76593271 Score: 176
Period size: 63 Copynumber: 2.5 Consensus size: 63
76593103 TCACAATCAT
* * * * ** *
76593113 CACAACACGCACACTCATTCCCTACACCATCACATTTAGTTCCAGTTTATTTTACACGACTAC
1 CACAACACACACAATCATTCCCTACATCAACACATTTAGCACCAGTTTATTTTACACAACTAC
* * * *
76593176 CATAGCACGCACAATCATTCCCTACATCAACTCATTTAGCACCAGTTTATTTTACACAAGC-AC
1 CACAACACACACAATCATTCCCTACATCAACACATTTAGCACCAGTTTATTTTACACAA-CTAC
* * *
76593239 CACAACACACCCCATCATTCCCTATATCAACAC
1 CACAACACACACAATCATTCCCTACATCAACAC
76593272 CTTCTCCAAG
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
63 78 0.99
64 1 0.01
ACGTcount: A:0.33, C:0.36, G:0.06, T:0.26
Consensus pattern (63 bp):
CACAACACACACAATCATTCCCTACATCAACACATTTAGCACCAGTTTATTTTACACAACTAC
Found at i:76594112 original size:17 final size:18
Alignment explanation
Indices: 76594090--76594123 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76594080 TATTTTAAAC
*
76594090 TTTGTTT-TTGGTTTTTT
1 TTTGTTTGTCGGTTTTTT
76594107 TTTGTTTGTCGGTTTTT
1 TTTGTTTGTCGGTTTTT
76594124 GGTATTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.00, C:0.03, G:0.21, T:0.76
Consensus pattern (18 bp):
TTTGTTTGTCGGTTTTTT
Found at i:76608235 original size:46 final size:46
Alignment explanation
Indices: 76608182--76608542 Score: 378
Period size: 46 Copynumber: 7.8 Consensus size: 46
76608172 ATTTGGGCAT
76608182 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
76608228 CCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* *
76608274 CCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * * * *
76608320 CCTAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
* * *
76608365 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAATGT
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * * * *
76608413 CTGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
*
76608458 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * *
76608506 CCGAGCTCGTTGATTTGAGTCCGAGTTCGCTTATGGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
76608543 CGGGTTACAT
Statistics
Matches: 262, Mismatches: 35, Indels: 36
0.79 0.11 0.11
Matches are distributed among these distances:
42 4 0.02
43 8 0.03
45 6 0.02
46 174 0.66
47 52 0.20
48 7 0.03
50 7 0.03
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:76608385 original size:47 final size:47
Alignment explanation
Indices: 76608325--76608487 Score: 201
Period size: 47 Copynumber: 3.5 Consensus size: 47
76608315 AATGTCCTAG
*
76608325 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAA
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAA
* * * * *
76608372 CTCGTTGAGTTGAGTCCGAGTTCACT--TATGT-A-T-GCGAATGTCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA--TCCGAA
76608418 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAA
76608465 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
76608488 ACTTATGGAT
Statistics
Matches: 96, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 30 0.31
47 54 0.56
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAA
Found at i:76608410 original size:93 final size:93
Alignment explanation
Indices: 76608177--76608534 Score: 510
Period size: 93 Copynumber: 3.9 Consensus size: 93
76608167 AGGATATTTG
*
76608177 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
* * * *
76608242 TTGAGTTCGAGTTCACT--TATG-GA-T-
66 TTGAGTCCGAGTTC-GTGAAATGTAACTA
* * * *
76608266 GCGAATGCCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCTAGCTCGTT
1 G-GCAT--CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTT
76608331 GAGTTGAGTCCGAGTTCGTGAAATGTAACTA
63 GAGTTGAGTCCGAGTTCGTGAAATGTAACTA
* * * *
76608362 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAATGTCTGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
76608427 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
76608455 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
76608520 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
76608535 CTTATGGACG
Statistics
Matches: 240, Mismatches: 21, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
89 1 0.00
90 3 0.01
91 1 0.00
92 69 0.29
93 160 0.67
94 1 0.00
95 4 0.02
96 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:76608515 original size:139 final size:135
Alignment explanation
Indices: 76608177--76608542 Score: 391
Period size: 139 Copynumber: 2.7 Consensus size: 135
76608167 AGGATATTTG
*
76608177 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
* * *
76608242 TTGAGTTCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTA
66 TTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAA
*
76608307 TGGAT
131 TGAAT
* * * * * * * *
76608312 GCGAATGTCCTAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCAAAC
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CCGAAC
* * * *
76608373 TCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAATGTCTGAGCTCGTTGAGTTGAGTCCGAG
58 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTGAGTCCGAG
*
76608438 TTC-GTGAAATGTAACT
123 TTCACT--AATG-AA-T
*
76608454 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
1 -GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGA
* *
76608519 TTTGAGTCCGAGTTCGCTTATGGA
65 GTTGAGTCCGAGTTCACTTATGGA
76608543 CGGGTTACAT
Statistics
Matches: 184, Mismatches: 30, Indels: 30
0.75 0.12 0.12
Matches are distributed among these distances:
134 2 0.01
135 4 0.02
136 2 0.01
137 4 0.02
138 28 0.15
139 99 0.54
140 30 0.16
141 5 0.03
142 3 0.02
143 4 0.02
144 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (135 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAA
TGAAT
Found at i:76610452 original size:23 final size:23
Alignment explanation
Indices: 76610426--76610497 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
76610416 TGTGATGCAA
76610426 ATATCTATGTTTGTTTAGCCCTT
1 ATATCTATGTTTGTTTAGCCCTT
* * ** *
76610449 ATAT-GATGTCATGAGTATG--ATT
1 ATATCTATGT-TTGTTTA-GCCCTT
76610471 ATATCTATGTTTGTTTAGCCCTT
1 ATATCTATGTTTGTTTAGCCCTT
76610494 ATAT
1 ATAT
76610498 GATGTCATGA
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
21 1 0.03
22 14 0.41
23 18 0.53
24 1 0.03
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.49
Consensus pattern (23 bp):
ATATCTATGTTTGTTTAGCCCTT
Found at i:76610457 original size:22 final size:22
Alignment explanation
Indices: 76610432--76610502 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
76610422 GCAAATATCT
76610432 ATGTTTGTTTAGCCCTTATATG
1 ATGTTTGTTTAGCCCTTATATG
* ** * *
76610454 ATGTCATGAGTATG--ATTATATCT
1 ATGT-TTGTTTA-GCCCTTATAT-G
76610477 ATGTTTGTTTAGCCCTTATATG
1 ATGTTTGTTTAGCCCTTATATG
76610499 ATGT
1 ATGT
76610503 CATGAGTATG
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
21 1 0.03
22 18 0.53
23 14 0.41
24 1 0.03
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (22 bp):
ATGTTTGTTTAGCCCTTATATG
Found at i:76610490 original size:45 final size:45
Alignment explanation
Indices: 76610426--76610515 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
76610416 TGTGATGCAA
76610426 ATATCTATGTTTGTTTAGCCCTTATATGATGTCATGAGTATGATT
1 ATATCTATGTTTGTTTAGCCCTTATATGATGTCATGAGTATGATT
76610471 ATATCTATGTTTGTTTAGCCCTTATATGATGTCATGAGTATGATT
1 ATATCTATGTTTGTTTAGCCCTTATATGATGTCATGAGTATGATT
76610516 TGTTTGAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (45 bp):
ATATCTATGTTTGTTTAGCCCTTATATGATGTCATGAGTATGATT
Found at i:76613396 original size:20 final size:20
Alignment explanation
Indices: 76613366--76613410 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
76613356 CTGTTCTGTT
76613366 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
76613385 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
76613405 ATGGGC
1 ATGGGC
76613411 AAGCCCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:76613476 original size:27 final size:28
Alignment explanation
Indices: 76613437--76613598 Score: 107
Period size: 28 Copynumber: 5.5 Consensus size: 28
76613427 GACTTGTATA
76613437 GGGCTATGGCCCAGATTGATACTGATAT
1 GGGCTATGGCCCAGATTGATACTGATAT
* *
76613465 GGGCTA-GGCCCAGTATACTCTGTTACTG-TAAG
1 GGGCTATGGCCCAG---A-T-TGATACTGAT-AT
76613497 GGGCTATGGCCCAGATTGATACTGATAT
1 GGGCTATGGCCCAGATTGATACTGATAT
* * *
76613525 GGGTTA-GGCCCAGTATACTCTGTTACTG-TAAG
1 GGGCTATGGCCCAG---A-T-TGATACTGAT-AT
* * *
76613557 GGGCTATGGTCCAGATTAATATTGATAT
1 GGGCTATGGCCCAGATTGATACTGATAT
*
76613585 GGGCTAAGGCCCAG
1 GGGCTATGGCCCAG
76613599 TTAACACTAA
Statistics
Matches: 103, Mismatches: 15, Indels: 32
0.69 0.10 0.21
Matches are distributed among these distances:
27 14 0.14
28 37 0.36
29 4 0.04
30 4 0.04
31 4 0.04
32 27 0.26
33 13 0.13
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (28 bp):
GGGCTATGGCCCAGATTGATACTGATAT
Found at i:76613501 original size:32 final size:32
Alignment explanation
Indices: 76613465--76613562 Score: 109
Period size: 32 Copynumber: 3.2 Consensus size: 32
76613455 ATACTGATAT
76613465 GGGCTAGGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTAGGCCCAGTATACTCTGTTACTGTAAG
* *
76613497 GGGCTATGGCCCAG---A-T-TGATACTG-ATAT
1 GGGCTA-GGCCCAGTATACTCTGTTACTGTA-AG
*
76613525 GGGTTAGGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTAGGCCCAGTATACTCTGTTACTGTAAG
76613557 GGGCTA
1 GGGCTA
76613563 TGGTCCAGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
27 8 0.15
28 13 0.25
29 1 0.02
30 2 0.04
31 1 0.02
32 19 0.37
33 8 0.15
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (32 bp):
GGGCTAGGCCCAGTATACTCTGTTACTGTAAG
Found at i:76613506 original size:60 final size:60
Alignment explanation
Indices: 76613437--76613599 Score: 281
Period size: 60 Copynumber: 2.7 Consensus size: 60
76613427 GACTTGTATA
76613437 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
*
76613497 GGGCTATGGCCCAGATTGATACTGATATGGGTTAGGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
* * *
76613557 GGGCTATGGTCCAGATTAATATTGATATGGGCTAAGGCCCAGT
1 GGGCTATGGCCCAGATTGATACTGATATGGGCT-AGGCCCAGT
76613600 TAACACTAAA
Statistics
Matches: 97, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
60 88 0.91
61 9 0.09
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (60 bp):
GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
Found at i:76615510 original size:15 final size:15
Alignment explanation
Indices: 76615490--76615545 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
76615480 GTATCTTGGG
76615490 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
76615505 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
76615520 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
76615535 TTTCTTTATTC
1 TTTCTTTATTC
76615546 AGTTTTCTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 4 0.12
15 25 0.76
16 4 0.12
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:76618311 original size:46 final size:46
Alignment explanation
Indices: 76618260--76618573 Score: 293
Period size: 46 Copynumber: 6.8 Consensus size: 46
76618250 ATTTGGGCAT
76618260 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * *
76618306 CCGAACTCGTTGAGTTGTGTTCGAGTTCACTTATGGATGGGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * * * *
76618352 CCGAGCTCATTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
*
76618397 ATCCGAA-TACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 --CCGAACT-CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * * * * *
76618445 CCGAGCTCGTTGAGTTGAGTCCTAGTTC-GTGAAATGTA-GC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGAATGC
* *
76618490 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
76618538 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76618574 GCAGGTTACA
Statistics
Matches: 212, Mismatches: 38, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
45 6 0.03
46 131 0.62
47 56 0.26
48 7 0.03
50 4 0.02
51 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:76618414 original size:47 final size:46
Alignment explanation
Indices: 76618361--76618519 Score: 148
Period size: 47 Copynumber: 3.4 Consensus size: 46
76618351 TCCGAGCTCA
76618361 TTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAATACG
1 TTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAAT-CG
* * * * *
76618408 TTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATGTCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA--TCCGA-ATCG
* *
76618454 TTGAGTTGAGTCCTAGTTCGTGAAATGTAGCTAGGCATCCGAACTCG
1 TTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAA-TCG
*
76618501 TTGAGTTGAGTCTGAGTTC
1 TTGAGTTGAGTCCGAGTTC
76618520 ACTTATGGAT
Statistics
Matches: 87, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 28 0.32
47 48 0.55
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAATCG
Found at i:76618428 original size:93 final size:93
Alignment explanation
Indices: 76618306--76618565 Score: 423
Period size: 93 Copynumber: 2.8 Consensus size: 93
76618296 ATGCGAATGC
* * * *
76618306 CCGAACTCGTTGAGTTGTGTTCGAGTTCACTTATGGATGGGAATGTCCGAGCTCATTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAGTTGAG
76618371 TCCGAGTTCGTGAAATGTAACTAGGCAT
66 TCCGAGTTCGTGAAATGTAACTAGGCAT
76618399 CCGAA-TACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAGTTGA
1 CCGAACT-CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAGTTGA
* *
76618463 GTCCTAGTTCGTGAAATGTAGCTAGGCAT
65 GTCCGAGTTCGTGAAATGTAACTAGGCAT
* * *
76618492 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAGTTGAG
76618557 TCCGAGTTC
66 TCCGAGTTC
76618566 ACTTATGGGC
Statistics
Matches: 155, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
92 1 0.01
93 153 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAGTTGAG
TCCGAGTTCGTGAAATGTAACTAGGCAT
Found at i:76623446 original size:23 final size:22
Alignment explanation
Indices: 76623405--76623449 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
76623395 TATTTAGCCA
*
76623405 TGTGATATGGCTTGGTTTTGGT
1 TGTGATATGGCTTGATTTTGGT
*
76623427 TGTGATTATGGTTTGATTTTGGT
1 TGTGA-TATGGCTTGATTTTGGT
76623450 ATATGAAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.11, C:0.02, G:0.33, T:0.53
Consensus pattern (22 bp):
TGTGATATGGCTTGATTTTGGT
Found at i:76626308 original size:144 final size:144
Alignment explanation
Indices: 76626048--76626321 Score: 521
Period size: 144 Copynumber: 1.9 Consensus size: 144
76626038 TCATCTCCAC
76626048 TTTCTGAGTCTTCACAGCTAACCGCCTCAGAAAAATTAGATGGCTCTTGGTTCGCATCTATATCT
1 TTTCTGAGTCTTCACAGCTAACCGCCTCAGAAAAATTAGATGGCTCTTGGTTCGCATCTATATCT
* *
76626113 TTACCCCACATTTAAAGCATAAGCAACTTGATTAACCTAGGCATACTTCTTAGGAGGTTTAATTT
66 TCACCCCACATTTAAAGCATAAGCAACTTGATCAACCTAGGCATACTTCTTAGGAGGTTTAATTT
76626178 AGCAAACATTCACT
131 AGCAAACATTCACT
*
76626192 TTTCTGAGTCTTCACAGCTAACCGCCTCAGAATAATTAGATGGCTCTTGGTTCGCATCTATATCT
1 TTTCTGAGTCTTCACAGCTAACCGCCTCAGAAAAATTAGATGGCTCTTGGTTCGCATCTATATCT
76626257 TCACCCCACATTTAAAGCATAAGCAACTTGATCAACCTAGGCATACTTCTTAGGAGGTTTAATTT
66 TCACCCCACATTTAAAGCATAAGCAACTTGATCAACCTAGGCATACTTCTTAGGAGGTTTAATTT
76626322 CTCTTCTAGT
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
144 127 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (144 bp):
TTTCTGAGTCTTCACAGCTAACCGCCTCAGAAAAATTAGATGGCTCTTGGTTCGCATCTATATCT
TCACCCCACATTTAAAGCATAAGCAACTTGATCAACCTAGGCATACTTCTTAGGAGGTTTAATTT
AGCAAACATTCACT
Found at i:76628549 original size:17 final size:18
Alignment explanation
Indices: 76628527--76628562 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
76628517 TAAATGAGTT
76628527 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
76628544 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
76628562 A
1 A
76628563 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:76629083 original size:21 final size:22
Alignment explanation
Indices: 76629050--76629099 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
76629040 AGGCACTTTA
* *
76629050 TGTGTCGTATATCAGGTACCTCG
1 TGTGTCG-ATATCAAGCACCTCG
*
76629073 TGTGTCG-TATCAAGCACCTTG
1 TGTGTCGATATCAAGCACCTCG
76629094 TGTGTC
1 TGTGTC
76629100 ATTTTAGGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 17 0.71
23 7 0.29
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (22 bp):
TGTGTCGATATCAAGCACCTCG
Found at i:76630984 original size:26 final size:26
Alignment explanation
Indices: 76630955--76631062 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
76630945 TGATACAAAT
76630955 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
76630981 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
76631007 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
76631033 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76631059 TGAT
1 TGAT
76631063 GGAAATTTTA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:76631969 original size:29 final size:29
Alignment explanation
Indices: 76631935--76631992 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
76631925 TTTGGAGTTT
76631935 CGTAGCTCCAGTTATAAATGATTTAGTGA
1 CGTAGCTCCAGTTATAAATGATTTAGTGA
76631964 CGTAGCTCCAGTTATAAATGATTTAGTGA
1 CGTAGCTCCAGTTATAAATGATTTAGTGA
76631993 TTGTTGCTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (29 bp):
CGTAGCTCCAGTTATAAATGATTTAGTGA
Found at i:76638009 original size:26 final size:26
Alignment explanation
Indices: 76637980--76638072 Score: 131
Period size: 26 Copynumber: 3.7 Consensus size: 26
76637970 TGATGCAAAT
76637980 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCTA
76638006 TGATAATGGGTTAGGTAAATGTT-TCA
1 TGATAATGGGTTAGGTAAATGTTCT-A
*
76638032 TGATAATGGGTTAGGTAAA---TCCA
1 TGATAATGGGTTAGGTAAATGTTCTA
*
76638055 TGACAATGGGTTAGGTAA
1 TGATAATGGGTTAGGTAA
76638073 TATGATGGAA
Statistics
Matches: 63, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
23 19 0.30
25 1 0.02
26 43 0.68
ACGTcount: A:0.32, C:0.05, G:0.28, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCTA
Found at i:76638678 original size:136 final size:136
Alignment explanation
Indices: 76638434--76638706 Score: 521
Period size: 136 Copynumber: 2.0 Consensus size: 136
76638424 TGTGCTTTAA
76638434 AATGATGAAATGGAGATTATACTTAATAAAATCATAGATATGTGATGATTGATTGGTGATATACA
1 AATGATGAAATGGAGATTATACTTAATAAAATCATAGATATGTGATGATTGATTGGTGATATACA
76638499 TGTTTAAATAATATGCATGCAAGTTATGTGTGAAAGAGTGATTTGGTAATAAATCTGCTTGGGAC
66 TGTTTAAATAATATGCATGCAAGTTATGTGTGAAAGAGTGATTTGGTAATAAATCTGCTTGGGAC
76638564 AGCAGC
131 AGCAGC
76638570 AATGATGAAATGGAGATTATACTTAAGTAAAATCATAGATATGTGATGATTGATTGGTGATATAC
1 AATGATGAAATGGAGATTATACTTAA-TAAAATCATAGATATGTGATGATTGATTGGTGATATAC
*
76638635 ATGTTTAAATAA-CTGCATGCAAGTTATGTGTGAAAGAGTGATTTGGTAATAAATCTGCTTGGGA
65 ATGTTTAAATAATATGCATGCAAGTTATGTGTGAAAGAGTGATTTGGTAATAAATCTGCTTGGGA
76638699 CAGCAGC
130 CAGCAGC
76638706 A
1 A
76638707 GTAACGTGAC
Statistics
Matches: 135, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
136 85 0.63
137 50 0.37
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (136 bp):
AATGATGAAATGGAGATTATACTTAATAAAATCATAGATATGTGATGATTGATTGGTGATATACA
TGTTTAAATAATATGCATGCAAGTTATGTGTGAAAGAGTGATTTGGTAATAAATCTGCTTGGGAC
AGCAGC
Found at i:76647956 original size:43 final size:43
Alignment explanation
Indices: 76647892--76647975 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
76647882 AACATGTAAC
* *
76647892 ACATCCCTAATGAACTCGGACCTCTCAACGAGCTCGGATGCTT
1 ACATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGCTT
*
76647935 ACATCCATAATGAACTTGGACCTCTCAACGAGCTCAGATGC
1 ACATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGC
76647976 CACATATCTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (43 bp):
ACATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGCTT
Found at i:76649334 original size:5 final size:5
Alignment explanation
Indices: 76649324--76649364 Score: 55
Period size: 5 Copynumber: 7.6 Consensus size: 5
76649314 CTGTGTGTTC
76649324 TTTAT TTTATT TTTATT TTTATT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTA-T TTTA-T TTTA-T TTTAT TTTAT TTTAT TTT
76649365 CACAAATTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 18 0.51
6 17 0.49
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTAT
Found at i:76649339 original size:6 final size:6
Alignment explanation
Indices: 76649324--76649364 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
76649314 CTGTGTGTTC
76649324 TTTA-T TTTATT TTTATT TTTATT TTTA-T TTTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
76649365 CACAAATTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
5 14 0.41
6 20 0.59
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:76654484 original size:132 final size:132
Alignment explanation
Indices: 76653832--76654485 Score: 604
Period size: 132 Copynumber: 4.9 Consensus size: 132
76653822 AGAAAATACA
* * * * **
76653832 AGTGAAATTTTGAAGAGACATTCGATTATTTTGAACAAACGGGGGATTGCAACCCAGCACGATAG
1 AGTGAAATTTTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* * * *
76653897 GGCACTATTCCCCGAATTGCCAAACATCGAACATT-TCTTCAGTTTTCAAGAGTTTTTAGAAA-A
66 GGCACTATTCCACGAATTGCCAAACATCGAACATTGCCTTC-GTTTTAAAGAATTTTTA-AAAGA
*
76653960 CATG
129 CACG
* * ** * * *
76653964 AGTGAAATTCTAAAGGGATCTTCGATCGTTTTGAACAAATGAAAAAGTGCAACCCAGCACGATAG
1 AGTGAAATTTTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* * * * * * ** *
76654029 GGCACGATT-CTCGAATTGCCAAACATCGAACATCGCATTTGTTTTTAAGGGTTTTTTTAAAAAA
66 GGCACTATTCCACGAATTGCCAAACATCGAACATTGCCTTCG-TTTTAA-AGAATTTTT-AAAAG
*
76654093 ACATG
128 ACACG
* ** * ** **
76654098 AATGAAAACTTAAAGGAACGTTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAG
1 AGTGAAATTTTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* * * ** * *
76654163 GGCA-TGATTCCA-AAATTGTCAAACACCGAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGAC
66 GGCACT-ATTCCACGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAAGAC
*
76654226 -CTA
130 AC-G
* * * *
76654229 AGTGAAATTTCAAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACAC-ATTA
1 AGTGAAATTTTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGA-TA
* * * * * * * *
76654293 GGGCGCGATTCCGCGAATTGCCAAATATCAAACTTTGCCTTCATTTTAAAGAATTTTTAAAAGTC
65 GGGCACTATTCCACGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAAGAC
76654358 ACG
130 ACG
* * * *
76654361 AGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAG
1 AGTGAAATTTTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* * *
76654426 GGCACTATTCCACAAATTGCCAAATATCGAATC-TTGTCTTCGTTTTAAAGAATTTTTAAA
66 GGCACTATTCCACGAATTGCCAAACATCGAA-CATTGCCTTCGTTTTAAAGAATTTTTAAA
76654486 TGAATACTTA
Statistics
Matches: 413, Mismatches: 95, Indels: 28
0.77 0.18 0.05
Matches are distributed among these distances:
130 1 0.00
131 88 0.21
132 221 0.54
133 17 0.04
134 85 0.21
135 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (132 bp):
AGTGAAATTTTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
GGCACTATTCCACGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAAGACA
CG
Found at i:76657748 original size:221 final size:221
Alignment explanation
Indices: 76657435--76658422 Score: 1480
Period size: 221 Copynumber: 4.5 Consensus size: 221
76657425 CCCCTGCCAA
* ** ** * * * *
76657435 TACAGAGACGCCAAATCTGCTATCTTTAATCTGCTTTCCGCC-GCTACAGAGACGACAAATCTAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
* * *
76657499 TATCTTTGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGT
66 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* *
76657564 CACTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCACTACAGAGACGCCAAATCT
131 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCACTACAGAGACGCCAAATCT
*
76657629 GCTATCTTCGATCTGCTCTCCGCTGC
196 GCTATCTTCGATCTGCTCTCCGCCGC
* *
76657655 TACAGAGACGCCAAATCTGTTATCTTCGATTTGCTCCCCACCTGATACAGAGATGCCAAATCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
* * * * *
76657720 TATCTTCGATATGCTCTCCGCTGCTACAGAGATGCCAAAGCTGCTATCTTTGATCTGCTCTCCGC
66 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* *
76657785 CGCTACAGAGACGACAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCT
131 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCACTACAGAGACGCCAAATCT
*
76657850 GCTATCTTCGATCTGCTCTCCGCCGT
196 GCTATCTTCGATCTGCTCTCCGCCGC
*
76657876 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTTCCCGCCTGATACAGAGATGCCAAATCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
* * * **
76657941 TATATTCGATCTGCTCTTCGCCGCTACAAAGACGCCAAATCTGCTATCTTCGATCTGCTCTTTGC
66 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* ** * *
76658006 CGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGCTTCAGAGACGCCAAATCT
131 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCACTACAGAGACGCCAAATCT
76658071 GCTATCTTCGATCTGCTCTCCGCCGC
196 GCTATCTTCGATCTGCTCTCCGCCGC
* * * * * *
76658097 TACGGGGACGCCAAATCTGTTAACTTCGATCTACTCCCCGCCTGATACAGAAATGCCAAAACTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
* *
76658162 TATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
66 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* * *
76658227 CGCTACAGAGACACCAAATCTGCTATATTCGATCTGCTCTCTGCCACTACAGAGACGCCAAATCT
131 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCACTACAGAGACGCCAAATCT
76658292 GCTA-CTTCGATCTGCTCTCCGCCGC
196 GCTATCTTCGATCTGCTCTCCGCCGC
* ** *
76658317 TATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCC--ACTACAGAGACGCCAAATCTG
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGA-TACAGAGATGCCAAATCTG
76658380 CTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
65 CTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
76658423 ATTATCTGCT
Statistics
Matches: 689, Mismatches: 77, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
218 1 0.00
219 58 0.08
220 91 0.13
221 539 0.78
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (221 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCACTACAGAGACGCCAAATCT
GCTATCTTCGATCTGCTCTCCGCCGC
Found at i:76658429 original size:44 final size:44
Alignment explanation
Indices: 76657435--76658422 Score: 1377
Period size: 44 Copynumber: 22.4 Consensus size: 44
76657425 CCCCTGCCAA
** *
76657435 TACAGAGACGCCAAATCTGCTATCTTTAATCTGCTTTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * *
76657479 TACAGAGACGACAAATCTACTATCTTTGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* *
76657523 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGTCAC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * *
76657567 TACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
*
76657611 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * * *
76657655 TACAGAGACGCCAAATCTGTTATCTTCGATTTGCTCCCCACCTGA
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC-GC
* * *
76657700 TACAGAGATGCCAAATCTGCTATCTTCGATATGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * *
76657744 TACAGAGATGCCAAAGCTGCTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * *
76657788 TACAGAGACGACAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
*
76657832 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGT
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* *
76657876 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCT-TCCCGCCTGA
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCT-CCGCC-GC
* * *
76657921 TACAGAGATGCCAAATCTGCTATATTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* **
76657965 TACAAAGACGCCAAATCTGCTATCTTCGATCTGCTCTTTGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * *
76658009 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
*
76658053 TTCAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * * * * *
76658097 TACGGGGACGCCAAATCTGTTAACTTCGATCTACTCCCCGCCTGA
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC-GC
* * *
76658142 TACAGAAATGCCAAAACTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* *
76658186 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * *
76658230 TACAGAGACACCAAATCTGCTATATTCGATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
76658274 TACAGAGACGCCAAATCTGCTA-CTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * *
76658317 TATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCAC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
76658361 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
76658405 TACAGAGACGCCAAATCT
1 TACAGAGACGCCAAATCT
76658423 ATTATCTGCT
Statistics
Matches: 831, Mismatches: 107, Indels: 12
0.87 0.11 0.01
Matches are distributed among these distances:
43 39 0.05
44 683 0.82
45 108 0.13
46 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
Found at i:76659666 original size:5 final size:5
Alignment explanation
Indices: 76659656--76659732 Score: 72
Period size: 5 Copynumber: 15.4 Consensus size: 5
76659646 TGGCCTATCA
*
76659656 TTTTC TTTTC TTTTC TTCT- TTTTC TTTTTC TTCTT- TATTTC -TTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TT-TTC T-TTTC TTTTC
*
76659701 TTTTC TTTTC TTTTC TTCT- TTTTC TTCTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TT-TTC TT
76659733 CTTTTTTTTG
Statistics
Matches: 60, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
4 10 0.17
5 37 0.62
6 13 0.22
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:76659680 original size:9 final size:8
Alignment explanation
Indices: 76659656--76659740 Score: 71
Period size: 9 Copynumber: 9.5 Consensus size: 8
76659646 TGGCCTATCA
76659656 TTTTCTTTT
1 TTTTC-TTT
76659665 CTTTTCTTCT
1 -TTTTCTT-T
76659675 TTTTCTTT
1 TTTTCTTT
76659683 TTCTTCTTT
1 TT-TTCTTT
*
76659692 ATTTCTTT
1 TTTTCTTT
76659700 CTTTTCTTTT
1 -TTTTC-TTT
76659710 CTTTTCTTCT
1 -TTTTCTT-T
76659720 TTTTCTTCT
1 TTTTCTT-T
*
76659729 TCTTCTTT
1 TTTTCTTT
76659737 TTTT
1 TTTT
76659741 TGAAGATCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
8 13 0.20
9 37 0.56
10 16 0.24
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTCTTT
Found at i:76659686 original size:15 final size:15
Alignment explanation
Indices: 76659661--76659738 Score: 92
Period size: 15 Copynumber: 5.3 Consensus size: 15
76659651 TATCATTTTC
76659661 TTTTC-TTTTCTTCT
1 TTTTCTTTTTCTTCT
76659675 TTTTCTTTTTCTTCTT
1 TTTTCTTTTTCTTC-T
76659691 TATTTCTTTCTT-TTC-
1 T-TTTCTTT-TTCTTCT
76659706 TTTTC-TTTTCTTCT
1 TTTTCTTTTTCTTCT
*
76659720 TTTTCTTCTTCTTCT
1 TTTTCTTTTTCTTCT
76659735 TTTT
1 TTTT
76659739 TTTGAAGATC
Statistics
Matches: 56, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
12 2 0.04
13 5 0.09
14 14 0.25
15 21 0.38
16 2 0.04
17 10 0.18
18 2 0.04
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTCTTTTTCTTCT
Found at i:76662322 original size:24 final size:25
Alignment explanation
Indices: 76662290--76662344 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
76662280 TGGGAAATTT
* *
76662290 AATGCAAATAATGCGATGCGATGC-
1 AATGCAAATAATGCAATGCAATGCA
*
76662314 AATGCAAATGATGCAATGCAATGCA
1 AATGCAAATAATGCAATGCAATGCA
76662339 AATGCA
1 AATGCA
76662345 TGTGATGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 21 0.78
25 6 0.22
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (25 bp):
AATGCAAATAATGCAATGCAATGCA
Found at i:76662326 original size:19 final size:19
Alignment explanation
Indices: 76662304--76662355 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
76662294 CAAATAATGC
76662304 GATGCGATGCAATGCAAAT
1 GATGCGATGCAATGCAAAT
*
76662323 GATGCAATGCAATGCAAAT
1 GATGCGATGCAATGCAAAT
*
76662342 GCATGTGATG-AATG
1 G-ATGCGATGCAATG
76662356 GAAAGGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 23 0.79
20 6 0.21
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (19 bp):
GATGCGATGCAATGCAAAT
Found at i:76664346 original size:131 final size:131
Alignment explanation
Indices: 76663893--76664548 Score: 550
Period size: 132 Copynumber: 5.0 Consensus size: 131
76663883 TAGAAAATAC
* * * * **
76663893 GAGTGAAATTTCGAAGAGACATTCGATTATTTTGAACAAACGGGGGATTGCAACCCAGCACGATA
1 GAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* * * * * *
76663958 GGGCACTATTCCCCGAAGTGCCAAACATCGAACATT-TCTTCCGTTTTCAAGAGTTTTTAGAAAA
66 GGGCACGATTCCCCGAATTGCCAAACACCGAACATTGCCTT-CGTTTTAAAGA-TTTTTAAAAAA
76664022 CAT
129 CAT
* ** * * **
76664025 GAGTGAAA-TTCTAAAGGGATCTTCGATCGTTTTGAACAAATGAAAAAGCGCAACCCAGCACGAT
1 GAGTGAAATTTC-AAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGAT
* * * * * *
76664089 AGGGCACGATT-CTCGAATTGCCAAACATCGAACATCGCATTTGTTTTAAAGGGTTTTCTTAAAA
65 AGGGCACGATTCCCCGAATTGCCAAACACCGAACATTGCCTTCGTTTTAAA--GATTT-TT--AA
76664153 AAAACAT
125 AAAACAT
* * * ** **
76664160 GAATGAAAACTT-AAAGGAACGTTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGAT
1 GAGTG-AAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGAT
* * * ** * *
76664224 AGGGCATGA-TCCCCAAATTGTCAAACACCGAGTATTGCCTTCGTTTTAAATGATTTTTAGAAGA
65 AGGGCACGATTCCCCGAATTGCCAAACACCGAACATTGCCTTCGTTTTAAA-GATTTTTAAAAAA
*
76664288 CCT
129 CAT
* * * *
76664291 GAGTGAAATTTCAAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTA
1 GAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* * * * * * * **
76664356 GGGCGCGATTCCGCGAATTGCCAAATATCAAACTTTGCCTTCATTTTAAAGAATTTTTAAAAGGC
66 GGGCACGATTCCCCGAATTGCCAAACACCGAACATTGCCTTCGTTTTAAAG-ATTTTTAAAAAAC
*
76664421 AC
130 AT
** * * *
76664423 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGTTA
1 GAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* ** * * * * *
76664488 GGGCACTATTCCGTGAATTGCCAAATATCGAATC-TCGTCTTCATTTTAAAGAATTTTTAAA
66 GGGCACGATTCCCCGAATTGCCAAACACCGAA-CATTGCCTTCGTTTTAAAG-ATTTTTAAA
76664549 TGAATACTTA
Statistics
Matches: 424, Mismatches: 86, Indels: 28
0.79 0.16 0.05
Matches are distributed among these distances:
130 5 0.01
131 93 0.22
132 217 0.51
133 6 0.01
134 5 0.01
135 93 0.22
136 3 0.01
137 2 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (131 bp):
GAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
GGGCACGATTCCCCGAATTGCCAAACACCGAACATTGCCTTCGTTTTAAAGATTTTTAAAAAACA
T
Found at i:76664405 original size:267 final size:267
Alignment explanation
Indices: 76663914--76664499 Score: 596
Period size: 266 Copynumber: 2.2 Consensus size: 267
76663904 CGAAGAGACA
* ** ** *
76663914 TTCGATTATTTTGAACAAACGGGGGATTGCAACCCAGCACGATAGGGCACTATTCCCCGAAGTGC
1 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTCCCCAAAGTGC
* * *
76663979 CAAACATCGAACATTTCTTCCGTTTTCAAGAGTTTTTAGAAAACATGAGTGAAATTCTAAAGGGA
66 CAAACACCGAACATTCCTTCCGTTTTAAAGAGTTTTTAGAAAACATGAGTGAAATTCTAAAGGGA
* * * * *
76664044 TCTTCGATCGTTTTGAACAAATGAAAAAGCGCAACCCAGCACGATAGGGCACGATTCTCGAATTG
131 TATTCGATCATTTTGAACAAACGAAAAAGCGCAACCCAACACGATAGGGCACGATTCGCGAATTG
* **
76664109 CCAAACATCGAACATCGCATTTGTTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAACTTAA
196 CCAAACATCAAACATCGCATTCATTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAACTTAA
76664174 AGGAACG
261 AGGAACG
*
76664181 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCA-TGA-TCCCCAAATTG
1 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACT-ATTCCCCAAAGTG
* ** * *
76664244 TCAAACACCGAGTATTGCCTT-CGTTTTAAATGA-TTTTTAGAAGACCTGAGTGAAATT-TCAAA
65 CCAAACACCGAACATT-CCTTCCGTTTTAAA-GAGTTTTTAGAAAACATGAGTGAAATTCT-AAA
* * * * ** * *
76664306 GGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCGCGATTCCGCG
127 GGGATATTCGATCATTTTGAACAAACGAAAAAGCGCAACCCAACACGATAGGGCACGATT-CGCG
* * * * ** ** * * *
76664371 AATTGCCAAATATCAAACTTTGCCTTCATTTTAAA-GAATTT-TT--AAAAGGCACGAGTGAAAT
191 AATTGCCAAACATCAAACATCGCATTCATTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAA
* * * **
76664432 TTTGAAGGGATA
256 CTTAAAGGAACG
* ** * *
76664444 TTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCC
1 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTCC
76664500 GTGAATTGCC
Statistics
Matches: 260, Mismatches: 52, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
263 65 0.25
264 4 0.02
265 3 0.01
266 107 0.41
267 81 0.31
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (267 bp):
TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTCCCCAAAGTGC
CAAACACCGAACATTCCTTCCGTTTTAAAGAGTTTTTAGAAAACATGAGTGAAATTCTAAAGGGA
TATTCGATCATTTTGAACAAACGAAAAAGCGCAACCCAACACGATAGGGCACGATTCGCGAATTG
CCAAACATCAAACATCGCATTCATTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAACTTAA
AGGAACG
Found at i:76666790 original size:15 final size:16
Alignment explanation
Indices: 76666759--76666794 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
76666749 TTTTTCGTTC
76666759 TTTTTCTTTGCTGTTG
1 TTTTTCTTTGCTGTTG
*
76666775 TTTTTTTTTGCT-TTG
1 TTTTTCTTTGCTGTTG
76666790 TTTTT
1 TTTTT
76666795 GCTTGTCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.00, C:0.08, G:0.14, T:0.78
Consensus pattern (16 bp):
TTTTTCTTTGCTGTTG
Found at i:76666817 original size:22 final size:21
Alignment explanation
Indices: 76666782--76666822 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
76666772 TTGTTTTTTT
*
76666782 TTGCTTTGTTTTTGCTTGTCC
1 TTGCTTTGTGTTTGCTTGTCC
*
76666803 TTGCTGTTGTGTTTGTTTGT
1 TTGCT-TTGTGTTTGCTTGT
76666823 TTCTTTGCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.00, C:0.12, G:0.24, T:0.63
Consensus pattern (21 bp):
TTGCTTTGTGTTTGCTTGTCC
Found at i:76667566 original size:5 final size:5
Alignment explanation
Indices: 76667556--76667588 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
76667546 CTGTGTGATC
76667556 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
76667589 CACAGTCCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:76679456 original size:21 final size:21
Alignment explanation
Indices: 76679424--76679544 Score: 102
Period size: 21 Copynumber: 5.8 Consensus size: 21
76679414 AGAAGCTAAC
*
76679424 AAGAGCTGAACAGAAACTCAT
1 AAGAGCTAAACAGAAACTCAT
* * *
76679445 AAGTGTTAAACAGAAGCTCAT
1 AAGAGCTAAACAGAAACTCAT
* *
76679466 AAGAGCTAAACAAAAACTCGT
1 AAGAGCTAAACAGAAACTCAT
* * *
76679487 AAGAGATGAACA-AAAGCTCGT
1 AAGAGCTAAACAGAAA-CTCAT
* * *
76679508 AAGAGATGAACAGAAGCTCGA-
1 AAGAGCTAAACAGAAACTC-AT
76679529 AAGAGCTAAACAGAAA
1 AAGAGCTAAACAGAAA
76679545 GTAAAACATT
Statistics
Matches: 81, Mismatches: 16, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
20 3 0.04
21 76 0.94
22 2 0.02
ACGTcount: A:0.50, C:0.16, G:0.21, T:0.14
Consensus pattern (21 bp):
AAGAGCTAAACAGAAACTCAT
Found at i:76700646 original size:17 final size:17
Alignment explanation
Indices: 76700624--76700660 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
76700614 ATGTCTAATA
* *
76700624 TTATCTAGAGTTGTCGT
1 TTATCTAGAGGTGTCAT
76700641 TTATCTAGAGGTGTCAT
1 TTATCTAGAGGTGTCAT
76700658 TTA
1 TTA
76700661 CACTGACCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.46
Consensus pattern (17 bp):
TTATCTAGAGGTGTCAT
Found at i:76703464 original size:16 final size:16
Alignment explanation
Indices: 76703431--76703460 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76703421 TTATTAATAT
76703431 TTTTATTTATTTCTTA
1 TTTTATTTATTTCTTA
76703447 TTTTA-TTATTTCTT
1 TTTTATTTATTTCTT
76703461 TATTACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTATTTATTTCTTA
Found at i:76705770 original size:30 final size:30
Alignment explanation
Indices: 76705736--76705796 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76705726 TCCTTAACTC
*
76705736 AAACTTTGGCAAAATTACAATTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
76705766 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
76705796 A
1 A
76705797 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:76708642 original size:43 final size:43
Alignment explanation
Indices: 76708558--76708643 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
76708548 TATGTGATTC
* * *
76708558 CGATATGTGTTTACGAGTAAGACCCTGTCTGGGAGAGTGGCAT
1 CGATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCAT
*
76708601 CGATATGTGGTTAC-ATGTAAGACCAC-GTCTAGGACATTGGCAT
1 CGATATGTGGTTACGA-GTAAGACC-CTGTCTAGGACAGTGGCAT
76708644 TGTACAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 35 0.95
44 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (43 bp):
CGATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCAT
Found at i:76713388 original size:40 final size:41
Alignment explanation
Indices: 76713357--76713436 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
76713347 AAAGGTCGTT
*
76713357 ATAG-ATCGAGCATTAGC-GGCGCTTTTTAAAAAACGCCGCC
1 ATAGAATCGAGCATTA-CTGGCGCTTTCTAAAAAACGCCGCC
*
76713397 ATAGAATCGAGCATTACTGGCGCTTTCTAAAAAATGCCGC
1 ATAGAATCGAGCATTACTGGCGCTTTCTAAAAAACGCCGC
76713437 AAAAAACATT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 5 0.14
41 31 0.86
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (41 bp):
ATAGAATCGAGCATTACTGGCGCTTTCTAAAAAACGCCGCC
Found at i:76713866 original size:7 final size:7
Alignment explanation
Indices: 76713856--76713923 Score: 50
Period size: 7 Copynumber: 9.6 Consensus size: 7
76713846 CTTAAATACA
76713856 AAATCCT
1 AAATCCT
*
76713863 AAATCAT
1 AAATCCT
*
76713870 AAATCAT
1 AAATCCT
*
76713877 AAATCAT
1 AAATCCT
*
76713884 AAAACTCT
1 AAATC-CT
76713892 AAA-CCTT
1 AAATCC-T
76713899 AAA-CCTT
1 AAATCC-T
*
76713906 AAACCCT
1 AAATCCT
76713913 AAATCCT
1 AAATCCT
76713920 AAAT
1 AAAT
76713924 AATAAAACAC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
6 1 0.02
7 47 0.87
8 6 0.11
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATCCT
Found at i:76713873 original size:14 final size:14
Alignment explanation
Indices: 76713856--76713929 Score: 60
Period size: 14 Copynumber: 5.2 Consensus size: 14
76713846 CTTAAATACA
76713856 AAATCCTAAATCAT
1 AAATCCTAAATCAT
*
76713870 AAATCATAAATCAT
1 AAATCCTAAATCAT
* * *
76713884 AAAACTCTAAACCTT
1 AAATC-CTAAATCAT
* *
76713899 AAA-CCTTAAACCCT
1 AAATCC-TAAATCAT
*
76713913 AAATCCTAAATAAT
1 AAATCCTAAATCAT
76713927 AAA
1 AAA
76713930 ACACTAAACT
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
13 1 0.02
14 36 0.75
15 11 0.23
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATCCTAAATCAT
Found at i:76718549 original size:23 final size:23
Alignment explanation
Indices: 76718512--76718705 Score: 182
Period size: 23 Copynumber: 8.5 Consensus size: 23
76718502 TGGTTGCTGC
* *
76718512 TGTTTAGATGCTGTAAATTGAAG
1 TGTTTAAATGTTGTAAATTGAAG
76718535 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGTTGTAAATTGAAG
*
76718558 TGTTTAAAT-TATGCAAATTGAAG
1 TGTTTAAATGT-TGTAAATTGAAG
** * *
76718581 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGTTGTAAATTGAAG
* * *
76718603 ATGTTTTATTGTTGT-AATTGAGG
1 -TGTTTAAATGTTGTAAATTGAAG
* *
76718626 TGTATAAATGTTGTTAATTG-AG
1 TGTTTAAATGTTGTAAATTGAAG
* *
76718648 ATG-CTAAAGTGTTGTAAATTGAAA
1 -TGTTTAAA-TGTTGTAAATTGAAG
76718672 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGTTGTAAATTGAAG
*
76718695 TGCTTAAATGT
1 TGTTTAAATGT
76718706 AGCACCCCAA
Statistics
Matches: 140, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
22 24 0.17
23 111 0.79
24 5 0.04
ACGTcount: A:0.32, C:0.03, G:0.23, T:0.42
Consensus pattern (23 bp):
TGTTTAAATGTTGTAAATTGAAG
Found at i:76719668 original size:28 final size:27
Alignment explanation
Indices: 76719613--76719696 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
76719603 AGCATGGCTG
* * *
76719613 CCAGAACAAATAAT-GTGACAGAGTCA
1 CCAGAACAGATAATCGTGGCAGAGCCA
*
76719639 CCAGATACAGATAATCGTGGGAGAGCCA
1 CCAGA-ACAGATAATCGTGGCAGAGCCA
* *
76719667 CCAGAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATAATCGTGGCAGAGCCA
76719694 CCA
1 CCA
76719697 TAAAGCTTCC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.10
27 30 0.61
28 14 0.29
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGGCAGAGCCA
Found at i:76721353 original size:26 final size:26
Alignment explanation
Indices: 76721317--76721400 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
76721307 CATGAAATTC
76721317 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
76721343 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
76721369 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
76721395 TTATCA
1 TTATCA
76721401 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:76721768 original size:23 final size:23
Alignment explanation
Indices: 76721742--76722435 Score: 406
Period size: 23 Copynumber: 30.3 Consensus size: 23
76721732 CATTAAATGT
*
76721742 TGTAAATTGAAGTGTTTAAGTAC
1 TGTAAATTGAAGTGTTTAAGTGC
76721765 TGTAAATTGAAGTGTTT-AGTTGC
1 TGTAAATTGAAGTGTTTAAG-TGC
* * *
76721788 TGGAAATTG-AGATGTTTTA-TCGT
1 TGTAAATTGAAG-TGTTTAAGT-GC
* * * *
76721811 TGT-AATTGAGGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* * *
76721833 TGTTAATTG-AGATGTTAAAGTAC
1 TGTAAATTGAAG-TGTTTAAGTGC
* * *
76721856 AGCAAATTGAAGTGTTTAAATGC
1 TGTAAATTGAAGTGTTTAAGTGC
*
76721879 TGTAAATTGAAGTGTTAAAGTGC
1 TGTAAATTGAAGTGTTTAAGTGC
* * *
76721902 TGCAAATTGGAA-TGTTAAAATGC
1 TGTAAATT-GAAGTGTTTAAGTGC
* *
76721925 TGCAAATTGAAGTG-TTAAATGC
1 TGTAAATTGAAGTGTTTAAGTGC
* *
76721947 TGTAAATTGAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* * * *
76721970 TATAAATTGAAGTGCTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
*
76721993 TGTAAATTGAAGTGTTTTAAGTAC
1 TGTAAATTGAAGTG-TTTAAGTGC
** *
76722017 TACAAATTGAAGGGTTT-AGTTG-
1 TGTAAATTGAAGTGTTTAAG-TGC
* * *
76722039 TTTGGAATTG-AGATGTTTTA-TCGC
1 TGT-AAATTGAAG-TGTTTAAGT-GC
* * * *
76722063 TGT-AATTGAGGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* *
76722085 TGTTAATTG-AGATGTTAAAGTGC
1 TGTAAATTGAAG-TGTTTAAGTGC
** * *
76722108 TACAAATTAAAGTGTTTAAATGC
1 TGTAAATTGAAGTGTTTAAGTGC
*
76722131 TGTAAATTGAAGTGTTAAAGTGC
1 TGTAAATTGAAGTGTTTAAGTGC
** *
76722154 TACAAATTGAAGTGTTTGAA-TGT
1 TGTAAATTGAAGTGTTT-AAGTGC
* *
76722177 TGTAAATTGAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
*
76722200 TGTAAATTGAAGTGTTTAAGTAC
1 TGTAAATTGAAGTGTTTAAGTGC
** *
76722223 TACAAATTGAAGTGTTT-AGTTGA
1 TGTAAATTGAAGTGTTTAAG-TGC
* *
76722246 TGGAAATTG-AGATGTTTTA-TCGC
1 TGTAAATTGAAG-TGTTTAAGT-GC
* * * *
76722269 TGT-AATTGAGGAGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* *
76722291 TGTTAATTG-AGATGTTAAAGTGC
1 TGTAAATTGAAG-TGTTTAAGTGC
* * *
76722314 TGCAAATTGAAGTGTTAAAGTGT
1 TGTAAATTGAAGTGTTTAAGTGC
*
76722337 TGCAAATTGAAGTG-TTAATGTGC
1 TGTAAATTGAAGTGTTTAA-GTGC
* * * *
76722360 TGCAAATTGGAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* * *
76722383 TGTAAATTAAAGTTTTTAAGTAC
1 TGTAAATTGAAGTGTTTAAGTGC
* *
76722406 TGCAAATTGAATTGTTT-AGTTGC
1 TGTAAATTGAAGTGTTTAAG-TGC
76722429 TG-AAATT
1 TGTAAATT
76722436 TAGTTTATGT
Statistics
Matches: 523, Mismatches: 110, Indels: 77
0.74 0.15 0.11
Matches are distributed among these distances:
22 97 0.19
23 390 0.75
24 36 0.07
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (23 bp):
TGTAAATTGAAGTGTTTAAGTGC
Found at i:76721820 original size:22 final size:22
Alignment explanation
Indices: 76721792--76721851 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
76721782 AGTTGCTGGA
**
76721792 AATTGAGATGTTTTATCGTTG-T
1 AATTGAGATGTTAAAT-GTTGTT
*
76721814 AATTGAGGTGTATAAATGTTGTT
1 AATTGAGATGT-TAAATGTTGTT
76721837 AATTGAGATGTTAAA
1 AATTGAGATGTTAAA
76721852 GTACAGCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (22 bp):
AATTGAGATGTTAAATGTTGTT
Found at i:76722242 original size:206 final size:207
Alignment explanation
Indices: 76721860--76722401 Score: 817
Period size: 206 Copynumber: 2.6 Consensus size: 207
76721850 AAGTACAGCA
* * * *
76721860 AATTGAAGTGTTTAAATGCTGTAAATTGA-AGTGTTAAAGTGCTGCAAATTGGAA-TGTTAAAAT
1 AATTGAGGTGTTTAAATGTTGTTAATTGAGA-TGTTAAAGTGCTGCAAATT-GAAGTGTTTAAAT
* * *
76721923 GCTGCAAATTGAAGTGTTAAA-TGCTGTAAATTGAAGTGTTTAAATGTTATAAATTGAAGTGCTT
64 GCTGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTT
*
76721987 AAATGTTGTAAATTGAAGTGTTTTAAGTACTACAAATTGAAGGGTTTAGTTGTTTGG-AATTGAG
129 AAATGTTGTAAATTGAAGTGTTTTAAGTACTACAAATTGAAGGGTTTAGTTG-ATGGAAATTGAG
76722051 ATGTTTTATCGCTGT
193 ATGTTTTATCGCTGT
* * *
76722066 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTACAAATTAAAGTGTTTAAATGC
1 AATTGAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGC
* * *
76722131 TGTAAATTGAAGTGTTAAAGTGCTACAAATTGAAGTGTTTGAATGTTGTAAATTGAAGTGTTTAA
66 TGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAA
*
76722196 ATGTTGTAAATTGAAGTG-TTTAAGTACTACAAATTGAAGTGTTTAGTTGATGGAAATTGAGATG
131 ATGTTGTAAATTGAAGTGTTTTAAGTACTACAAATTGAAGGGTTTAGTTGATGGAAATTGAGATG
76722260 TTTTATCGCTGT
196 TTTTATCGCTGT
*
76722272 AATTGAGGAGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTG-TTAAAGTG
1 AATTGAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAA-TG
* * * * *
76722336 TTGCAAATTGAAGTGTTAATGTGCTGCAAATTGGAGTGTTTAAATGTTGTAAATTAAAGTTTTTA
65 CTGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTA
76722401 A
130 A
76722402 GTACTGCAAA
Statistics
Matches: 304, Mismatches: 27, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
205 10 0.03
206 235 0.77
207 59 0.19
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (207 bp):
AATTGAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGC
TGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAA
ATGTTGTAAATTGAAGTGTTTTAAGTACTACAAATTGAAGGGTTTAGTTGATGGAAATTGAGATG
TTTTATCGCTGT
Found at i:76723194 original size:43 final size:43
Alignment explanation
Indices: 76723109--76723301 Score: 289
Period size: 43 Copynumber: 4.5 Consensus size: 43
76723099 AGGTTCTTTA
* * *
76723109 GTCATGTTTTTTAGCGGCGTTT-TTGGGAAAGTGCCGCTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAG
*
76723151 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCTGCTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAG
*
76723194 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCTGCTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAG
* * *
76723237 GTCATGTTCTTTAGCGACGTTTGTGGGGAAAGCGCCACTAAAA
1 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAG
* *
76723280 GTCATGTTCTATAGAGGCGTTT
1 GTCATGTTCTTTAGCGGCGTTT
76723302 TTTCACATAA
Statistics
Matches: 139, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 21 0.15
43 118 0.85
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.32
Consensus pattern (43 bp):
GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAG
Found at i:76728659 original size:17 final size:18
Alignment explanation
Indices: 76728639--76728672 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
76728629 AAGTGAATTG
76728639 AAATTGCA-AAATTAAAT
1 AAATTGCAGAAATTAAAT
76728656 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
76728673 ATGAGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:76729421 original size:20 final size:20
Alignment explanation
Indices: 76729398--76729437 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
76729388 TGAAATTGTA
76729398 AAAGATAAAT-ACAAATAAAT
1 AAAGATAAATGA-AAATAAAT
76729418 AAAGATAAATGAAAATAAAT
1 AAAGATAAATGAAAATAAAT
76729438 CCTAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAGATAAATGAAAATAAAT
Found at i:76734676 original size:53 final size:52
Alignment explanation
Indices: 76734529--76734700 Score: 186
Period size: 52 Copynumber: 3.2 Consensus size: 52
76734519 TGACGGAAAA
* * * * *
76734529 GATGTGATATGTGCTTCTGTATAAGACCATAGCTGGGCTATGGAATTGGTAC
1 GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
* *
76734581 AATGTGAT-T-CGAGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GATGTGATATGTGA-TT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
* * *
76734633 GATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCTGTAT
1 GATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
*
76734686 GTTATGTGATCTGTG
1 G--ATGTGATATGTG
76734701 TAAGACCATG
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
50 1 0.01
51 3 0.03
52 46 0.46
53 34 0.34
54 7 0.07
55 9 0.09
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (52 bp):
GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
Found at i:76745696 original size:18 final size:19
Alignment explanation
Indices: 76745659--76745696 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
76745649 ACTTCACATT
*
76745659 ATTATAAAGAAATGAATTA
1 ATTATAAAAAAATGAATTA
76745678 ATTATAAAAAAAT-AATTA
1 ATTATAAAAAAATGAATTA
76745696 A
1 A
76745697 AAATATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
ATTATAAAAAAATGAATTA
Found at i:76745900 original size:23 final size:22
Alignment explanation
Indices: 76745877--76745920 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
76745867 ATATATAATA
76745877 AATAAATTTAAAATGA-TTATAT
1 AATAAATTTAAAAT-ATTTATAT
*
76745899 AATTAATTTAAAATATTTATAT
1 AATAAATTTAAAATATTTATAT
76745921 TTATTATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
AATAAATTTAAAATATTTATAT
Found at i:76746405 original size:19 final size:19
Alignment explanation
Indices: 76746383--76746444 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
76746373 TATAATTACC
76746383 ATTTACTACTAAAATTAAT
1 ATTTACTACTAAAATTAAT
* * **
76746402 ATTT-CTCTCTCATAATTACC
1 ATTTACT-ACT-AAAATTAAT
*
76746422 ATTTACTATTAAAATTAAT
1 ATTTACTACTAAAATTAAT
76746441 ATTT
1 ATTT
76746445 CTCTCTCACA
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
18 2 0.06
19 16 0.52
20 11 0.35
21 2 0.06
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTACTACTAAAATTAAT
Found at i:76746417 original size:39 final size:39
Alignment explanation
Indices: 76746374--76746452 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
76746364 TTAGTAGGAT
76746374 ATAATTACCATTTACTACTAAAATTAATATTTCTCTCTC
1 ATAATTACCATTTACTACTAAAATTAATATTTCTCTCTC
*
76746413 ATAATTACCATTTACTATTAAAATTAATATTTCTCTCTC
1 ATAATTACCATTTACTACTAAAATTAATATTTCTCTCTC
76746452 A
1 A
76746453 CAAAATTCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (39 bp):
ATAATTACCATTTACTACTAAAATTAATATTTCTCTCTC
Found at i:76749332 original size:47 final size:44
Alignment explanation
Indices: 76749176--76749479 Score: 256
Period size: 47 Copynumber: 6.6 Consensus size: 44
76749166 TTTGTGCGCC
* * * * *
76749176 AGTGTAAGACATGTCTGGAACATGCTTCGGCCACATTATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTA-A-GA-GATGAGCT
* *
76749222 AGTGTAAGACCATGTCTGGGACATGGCATCGTC-ATAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-AGAGATGA--GCT
* *
76749270 AGAGTAAAACATGTCTGGGACATGCATCGGCCTCTACAGAGAT-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CTA-AGAGATGAGCT
** * * *
76749317 AGTGTAAGATGTGTCTGGGACACGCATCGGCTAAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGAGCT
* *
76749361 AGAGTAAGACATGTCTGGGACATGCATCGGCCTTGATAGAGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-T-A-AGAGATGAGCT
* * * *
76749408 AGTGTAAGACGTGTCTGGGACATGCATTGGCTAAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGAGCT
76749452 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
76749480 AGCATGCATA
Statistics
Matches: 211, Mismatches: 32, Indels: 32
0.77 0.12 0.12
Matches are distributed among these distances:
43 10 0.05
44 61 0.29
45 4 0.02
46 20 0.09
47 86 0.41
48 21 0.10
49 2 0.01
50 7 0.03
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGAGCT
Found at i:76749384 original size:91 final size:91
Alignment explanation
Indices: 76749179--76749479 Score: 351
Period size: 91 Copynumber: 3.3 Consensus size: 91
76749169 GTGCGCCAGT
* * * * *
76749179 GTAAGACATGTCTGGAACATGCTTCGGCC---ACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 GTAAGACATGTCTGGGACATGCATCGGCCTTGACA-GA-GATAGCCAGTGTAAGA-CGTGTCTGG
* * * *
76749241 GACATGGCATCGTC-ATAGAGATGAGTGCCAGA
63 GACA-CGCATCGGCTA-AGAG-T-TGTGCTAGA
* * *
76749273 GTAAAACATGTCTGGGACATGCATCGGCCTCT-ACAGAGATAGCTAGTGTAAGATGTGTCTGGGA
1 GTAAGACATGTCTGGGACATGCATCGGCCT-TGACAGAGATAGCCAGTGTAAGACGTGTCTGGGA
76749337 CACGCATCGGCTAAGAGTTGTGCTAGA
65 CACGCATCGGCTAAGAGTTGTGCTAGA
*
76749364 GTAAGACATGTCTGGGACATGCATCGGCCTTGATAGAGATAGCCAGTGTAAGACGTGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCGGCCTTGACAGAGATAGCCAGTGTAAGACGTGTCTGGGAC
* * *
76749429 ATGCATTGGCTAAGAGTTGTGCTAGT
66 ACGCATCGGCTAAGAGTTGTGCTAGA
76749455 GTAAGACATGTCTGGGACATGCATC
1 GTAAGACATGTCTGGGACATGCATC
76749480 AGCATGCATA
Statistics
Matches: 183, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
90 1 0.01
91 114 0.62
92 1 0.01
93 11 0.06
94 38 0.21
95 14 0.08
96 1 0.01
97 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (91 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTTGACAGAGATAGCCAGTGTAAGACGTGTCTGGGAC
ACGCATCGGCTAAGAGTTGTGCTAGA
Found at i:76756998 original size:47 final size:47
Alignment explanation
Indices: 76756847--76757103 Score: 172
Period size: 47 Copynumber: 5.5 Consensus size: 47
76756837 TAATTTGTGC
* * *
76756847 GCCAGTGTAAGACATGTCTGGGACATGCTTCGG-C-C-ACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACA-GA-GATA
* * * * * *
76756893 GCTAGTGAAAGACCATGTCTGGGACATGGCATCGGCATAGAGATA-AGT-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGACAGAGA-TA
* * *
76756941 GGCAGAGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATA
* * * *
76756988 GCCAGTGTAAGACGTGTCTGGGACACGCATCGG-CT--A-AGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGAT-A
* * * ** * *
76757032 GCTAGAGTAATACATGTCTAAGACATGCATTGACCTCGACAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATA
* *
76757079 GCCAGTGTAAGACGTGTCTTGGACA
1 GCCAGTGTAAGACATGTCTGGGACA
76757104 CGTATTGGCC
Statistics
Matches: 158, Mismatches: 40, Indels: 25
0.71 0.18 0.11
Matches are distributed among these distances:
43 5 0.03
44 25 0.16
45 2 0.01
46 26 0.16
47 76 0.48
48 20 0.13
50 2 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATA
Found at i:76757069 original size:91 final size:91
Alignment explanation
Indices: 76756944--76757153 Score: 303
Period size: 91 Copynumber: 2.3 Consensus size: 91
76756934 GATAAGTGGC
* * *
76756944 AGAGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGAGATAGCCAGTGTAAGACGTGTCTGG
1 AGAGTAAGACATGTCTAGGACATGCATCGACCTCGACAGAGATAGCCAGTGTAAGACGTGTCTGG
*
76757009 GACACGCATCGGCTAAGAGTTGTGCT
66 GACACGCATCGGCCAAGAGTTGTGCT
* * * *
76757035 AGAGTAATACATGTCTAAGACATGCATTGACCTCGACAGAGATAGCCAGTGTAAGACGTGTCTTG
1 AGAGTAAGACATGTCTAGGACATGCATCGACCTCGACAGAGATAGCCAGTGTAAGACGTGTCTGG
* *
76757100 GACACGTATTGGCCAAGAGTTGTGCT
66 GACACGCATCGGCCAAGAGTTGTGCT
* * *
76757126 AGTGAAAGACATGTCTAGGATATGCATC
1 AGAGTAAGACATGTCTAGGACATGCATC
76757154 AGTACGCATA
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
91 103 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (91 bp):
AGAGTAAGACATGTCTAGGACATGCATCGACCTCGACAGAGATAGCCAGTGTAAGACGTGTCTGG
GACACGCATCGGCCAAGAGTTGTGCT
Found at i:76759762 original size:43 final size:43
Alignment explanation
Indices: 76759701--76759789 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 43
76759691 ATTAAAATGG
*
76759701 TAAAACGAGTCAACTATTCCCAAACCTTGTTCTTTCCACGATC
1 TAAAACGAGTCAACTATTCCCAAACCTTGTTCTTTCCACAATC
*
76759744 TAAAATGAGTCAACTATTCCCAAACCTTGTTCTTTCCACAATC
1 TAAAACGAGTCAACTATTCCCAAACCTTGTTCTTTCCACAATC
76759787 TAA
1 TAA
76759790 GTCCGTATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (43 bp):
TAAAACGAGTCAACTATTCCCAAACCTTGTTCTTTCCACAATC
Found at i:76762102 original size:29 final size:29
Alignment explanation
Indices: 76762050--76762108 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
76762040 CAAGTAGACT
* *
76762050 TTTATCACTTAAGGTCTCTTTTCTCTCTA
1 TTTATCACTTAAAGTCTCTGTTCTCTCTA
*
76762079 TTTATCACTTAAAGTTTCTGTTCTCTCTA
1 TTTATCACTTAAAGTCTCTGTTCTCTCTA
76762108 T
1 T
76762109 CTTTTTACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.19, C:0.22, G:0.07, T:0.53
Consensus pattern (29 bp):
TTTATCACTTAAAGTCTCTGTTCTCTCTA
Found at i:76765904 original size:21 final size:21
Alignment explanation
Indices: 76765880--76765952 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 21
76765870 TGTAAGACAT
76765880 CTATCCCAAAGAGGAAAAAAG
1 CTATCCCAAAGAGGAAAAAAG
* *** * * * *
76765901 CTATTCCAACCTTGTAAGACAT
1 CTATCCCAA-AGAGGAAAAAAG
76765923 CTATCCCAAAGAGGAAAAAAG
1 CTATCCCAAAGAGGAAAAAAG
*
76765944 CTATTCCAA
1 CTATCCCAA
76765953 CCTATACTAT
Statistics
Matches: 34, Mismatches: 17, Indels: 2
0.64 0.32 0.04
Matches are distributed among these distances:
21 21 0.62
22 13 0.38
ACGTcount: A:0.44, C:0.23, G:0.14, T:0.19
Consensus pattern (21 bp):
CTATCCCAAAGAGGAAAAAAG
Found at i:76765931 original size:43 final size:43
Alignment explanation
Indices: 76765870--76765955 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
76765860 ATAGCTAGAG
76765870 TGTAAGACATCTATCCCAAAGAGGAAAAAAGCTATTCCAACCT
1 TGTAAGACATCTATCCCAAAGAGGAAAAAAGCTATTCCAACCT
76765913 TGTAAGACATCTATCCCAAAGAGGAAAAAAGCTATTCCAACCT
1 TGTAAGACATCTATCCCAAAGAGGAAAAAAGCTATTCCAACCT
76765956 ATACTATGGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.42, C:0.23, G:0.14, T:0.21
Consensus pattern (43 bp):
TGTAAGACATCTATCCCAAAGAGGAAAAAAGCTATTCCAACCT
Found at i:76768619 original size:14 final size:13
Alignment explanation
Indices: 76768600--76768630 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
76768590 TAAGATTAGA
76768600 TATTTATTTTATAT
1 TATTTATTTTAT-T
76768614 TATTTATTTTATT
1 TATTTATTTTATT
76768627 TATT
1 TATT
76768631 AGATAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TATTTATTTTATT
Found at i:76771066 original size:23 final size:23
Alignment explanation
Indices: 76771040--76771095 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
76771030 AGCCATGTGA
76771040 TATGGCTTGATTATGGTTGATCT
1 TATGGCTTGATTATGGTTGATCT
76771063 TATGGCTTGATTATGGTTGATCT
1 TATGGCTTGATTATGGTTGATCT
76771086 TATGG-TTGAT
1 TATGGCTTGAT
76771096 CTTATGTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 5 0.15
23 28 0.85
ACGTcount: A:0.18, C:0.07, G:0.27, T:0.48
Consensus pattern (23 bp):
TATGGCTTGATTATGGTTGATCT
Found at i:76771067 original size:12 final size:12
Alignment explanation
Indices: 76771050--76771107 Score: 84
Period size: 12 Copynumber: 4.8 Consensus size: 12
76771040 TATGGCTTGA
76771050 TTATGGTTGATC
1 TTATGGTTGATC
76771062 TTATGGCTTGA--
1 TTATGG-TTGATC
76771073 TTATGGTTGATC
1 TTATGGTTGATC
76771085 TTATGGTTGATC
1 TTATGGTTGATC
76771097 TTATGTGTTGA
1 TTATG-GTTGA
76771108 GGAAACATCT
Statistics
Matches: 42, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
10 4 0.10
11 6 0.14
12 23 0.55
13 9 0.21
ACGTcount: A:0.17, C:0.07, G:0.26, T:0.50
Consensus pattern (12 bp):
TTATGGTTGATC
Found at i:76771078 original size:11 final size:10
Alignment explanation
Indices: 76771040--76771095 Score: 58
Period size: 12 Copynumber: 5.0 Consensus size: 10
76771030 AGCCATGTGA
76771040 TATGGCTTGAT
1 TATGG-TTGAT
76771051 TATGGTTGATCT
1 TATGGTTGA--T
76771063 TATGGCTTGAT
1 TATGG-TTGAT
76771074 TATGGTTGATCT
1 TATGGTTGA--T
76771086 TATGGTTGAT
1 TATGGTTGAT
76771096 CTTATGTGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
10 9 0.22
11 11 0.28
12 16 0.40
13 4 0.10
ACGTcount: A:0.18, C:0.07, G:0.27, T:0.48
Consensus pattern (10 bp):
TATGGTTGAT
Found at i:76780388 original size:46 final size:46
Alignment explanation
Indices: 76780245--76780452 Score: 203
Period size: 46 Copynumber: 4.5 Consensus size: 46
76780235 TTTGTGTGCT
* *
76780245 AGTGTAAGACAT-TCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * *
76780290 AGTGTAAGACGATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
* * * *
76780338 AGTGTAAGACATATTTGCGACATGCATCGGCCTCGAGATGTA-TGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* * *
76780384 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGA-G-GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
*
76780428 AGTGTAAGACCATATCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
76780453 GCATTAACAC
Statistics
Matches: 137, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 12 0.09
45 27 0.20
46 50 0.36
47 21 0.15
48 26 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:76780405 original size:93 final size:92
Alignment explanation
Indices: 76780242--76780411 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
76780232 TTATTTGTGT
* *
76780242 GCTAGTGTAAGACATTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACGATGTCT
1 GCTAGTGTAAGACATTCTGCGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACGATGTCT
76780307 GGGACATGGCATCGGCATTGAGATGAGA
66 GGGACAT-GCATCGGCATTGAGATGAGA
* * *
76780335 GCTAGTGTAAGACATATTTGCGACATGCATCGGCCTCGA-GATGTA-TGCCAGTGTAAGAC-ATG
1 GCTAGTGTAAGACAT-TCTGCGACATGCATCGGCCAC-ATGATG-AGAGCCAGTGTAAGACGATG
76780397 TCTGGGACATGCATC
63 TCTGGGACATGCATC
76780412 AGCTACGAGA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
92 5 0.07
93 28 0.41
94 34 0.49
95 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (92 bp):
GCTAGTGTAAGACATTCTGCGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACGATGTCT
GGGACATGCATCGGCATTGAGATGAGA
Found at i:76782666 original size:63 final size:63
Alignment explanation
Indices: 76782562--76782683 Score: 226
Period size: 63 Copynumber: 1.9 Consensus size: 63
76782552 TTCGGGTACG
* *
76782562 ATCTGATTACTCGCTTGATAAGTTAAGTGAATTATATATTTTTTATATTGTGAGATTGCTACA
1 ATCTGATTACTCGCTTGATAAATTAAGTGAATTATACATTTTTTATATTGTGAGATTGCTACA
76782625 ATCTGATTACTCGCTTGATAAATTAAGTGAATTATACATTTTTTATATTGTGAGATTGC
1 ATCTGATTACTCGCTTGATAAATTAAGTGAATTATACATTTTTTATATTGTGAGATTGC
76782684 ACAGAGTGCC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (63 bp):
ATCTGATTACTCGCTTGATAAATTAAGTGAATTATACATTTTTTATATTGTGAGATTGCTACA
Found at i:76784175 original size:42 final size:43
Alignment explanation
Indices: 76784112--76784224 Score: 115
Period size: 44 Copynumber: 2.6 Consensus size: 43
76784102 ATGGATTTGA
*
76784112 GATTTACGTGTAA-ACCATGTCTGGGACATTGCCATC-ATA-TTT
1 GATTT-CGTGTAAGACCATGTCT-GGACAATGCCATCGATATTTT
* *
76784154 GATTTCGTGTAAGACCCTGTCTGGACAATGGCATCGATATTTTT
1 GATTTCGTGTAAGACCATGTCTGGACAATGCCATCGATA-TTTT
* * *
76784198 GATTACATGTAAGACCACGTCTAGGAC
1 GATTTCGTGTAAGACCATGTCT-GGAC
76784225 GTTGGCATTG
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
41 18 0.31
42 16 0.27
44 21 0.36
45 4 0.07
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATGTCTGGACAATGCCATCGATATTTT
Found at i:76784180 original size:41 final size:44
Alignment explanation
Indices: 76784060--76784224 Score: 117
Period size: 43 Copynumber: 3.8 Consensus size: 44
76784050 CATAGGATTT
* * ** ** *
76784060 TCGATA-TGTGATTTCATGTAAGACCACATCTGGGACGTTGGCA
1 TCGATATTTTGATTTCGTGTAAGACCATGTCTGGGACAATGCCA
* ** *
76784103 TGGAT-TTGAGATTTACGTGTAA-ACCATGTCTGGGACATTGCCA
1 TCGATATTTTGATTT-CGTGTAAGACCATGTCTGGGACAATGCCA
* *
76784146 TC-ATA-TTTGATTTCGTGTAAGACCCTGTCT-GGACAATGGCA
1 TCGATATTTTGATTTCGTGTAAGACCATGTCTGGGACAATGCCA
* * * *
76784187 TCGATATTTTTGATTACATGTAAGACCACGTCTAGGAC
1 TCGATA-TTTTGATTTCGTGTAAGACCATGTCTGGGAC
76784225 GTTGGCATTG
Statistics
Matches: 97, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
41 18 0.19
42 19 0.20
43 29 0.30
44 27 0.28
45 4 0.04
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (44 bp):
TCGATATTTTGATTTCGTGTAAGACCATGTCTGGGACAATGCCA
Found at i:76790164 original size:30 final size:29
Alignment explanation
Indices: 76790128--76790202 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 29
76790118 ATTATTAGGG
76790128 TTTATCAGACACTATTTACTGGTGATTATA
1 TTTATCAGACACTATTTACTGGTG-TTATA
* *
76790158 TTTATCAGGTACA-TTTTTACTTGTGTTATA
1 TTTATCA-G-ACACTATTTACTGGTGTTATA
*
76790188 TTTATCAGGCACTAT
1 TTTATCAGACACTAT
76790203 GTGCCGATGG
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
28 2 0.05
29 3 0.08
30 19 0.50
31 11 0.29
32 3 0.08
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (29 bp):
TTTATCAGACACTATTTACTGGTGTTATA
Found at i:76793413 original size:30 final size:31
Alignment explanation
Indices: 76793346--76793418 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
76793336 TCATTGGCTG
76793346 ATGAAAAGGGATAGCTTCGGCTATCAAAATA
1 ATGAAAAGGGATAGCTTCGGCTATCAAAATA
*
76793377 ATGAAAAGGGATAGTCTT-GGCTATC-AAATT
1 ATGAAAAGGGATAG-CTTCGGCTATCAAAATA
76793407 ATGAAAAGGGAT
1 ATGAAAAGGGAT
76793419 GGTGACAACC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
30 16 0.40
31 21 0.52
32 3 0.08
ACGTcount: A:0.41, C:0.10, G:0.25, T:0.25
Consensus pattern (31 bp):
ATGAAAAGGGATAGCTTCGGCTATCAAAATA
Found at i:76793447 original size:29 final size:30
Alignment explanation
Indices: 76793407--76793477 Score: 117
Period size: 29 Copynumber: 2.4 Consensus size: 30
76793397 CTATCAAATT
*
76793407 ATGAAAAGGGATGGTGACAACCATC-CACA
1 ATGAAAAGGGATGGTGACAACCATCGAACA
*
76793436 ATGAAAAGGGATGGTGACGACCATCGAACA
1 ATGAAAAGGGATGGTGACAACCATCGAACA
76793466 ATGAAAAGGGAT
1 ATGAAAAGGGAT
76793478 AGCTTCGGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 24 0.62
30 15 0.38
ACGTcount: A:0.42, C:0.15, G:0.28, T:0.14
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACAACCATCGAACA
Found at i:76793581 original size:119 final size:119
Alignment explanation
Indices: 76793346--76793566 Score: 266
Period size: 119 Copynumber: 1.8 Consensus size: 119
76793336 TCATTGGCTG
* * *
76793346 ATGAAAAGGGATAGCTTCGGCTATCAAAATAATGAAAAGGGATAGTCTTGGCTATCAAATTATGA
1 ATGAAAAGGGATAGCTTCGGCTATCAAAATAATGAAAAGGGATAGTCATGACCATCAAA-TATGA
* * *
76793411 AAAGGGATGGTGACAACCATCCACAATGAAAAGGGATGGTGACGACCATCGAACA
65 AAAGGAATGGTGACAACCATCAACAATGAAAAGGGATGCTGACGACCATCGAACA
* * *
76793466 ATGAAAAGGGATAGCTTCGGCTATC-AAATTATGAAAAGGGATGGTGATGACCATCAACA-ATGA
1 ATGAAAAGGGATAGCTTCGGCTATCAAAATAATGAAAAGGGATAGTCATGACCATCAA-ATATGA
* * ** * *
76793529 AATGTAATGGTGATGACCATCAAATAATGAGAAGGGAT
65 AAAGGAATGGTGACAACCATC-AACAATGAAAAGGGAT
76793567 AGCTTTGACT
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
118 20 0.24
119 39 0.46
120 26 0.31
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.21
Consensus pattern (119 bp):
ATGAAAAGGGATAGCTTCGGCTATCAAAATAATGAAAAGGGATAGTCATGACCATCAAATATGAA
AAGGAATGGTGACAACCATCAACAATGAAAAGGGATGCTGACGACCATCGAACA
Found at i:76793596 original size:30 final size:30
Alignment explanation
Indices: 76793555--76793624 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
76793545 CCATCAAATA
* *
76793555 ATGAGAAGGGATAGCTTTGACTAT-CGAGCT
1 ATGAAAAGGGATAACTTTGACTATCCG-GCT
* *
76793585 GTGAAAAGGGATAACTTTGGCTATCCGGCT
1 ATGAAAAGGGATAACTTTGACTATCCGGCT
76793615 ATGAAAAGGG
1 ATGAAAAGGG
76793625 TTGGGACAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATAACTTTGACTATCCGGCT
Found at i:76793596 original size:89 final size:89
Alignment explanation
Indices: 76793372--76793579 Score: 292
Period size: 89 Copynumber: 2.3 Consensus size: 89
76793362 TCGGCTATCA
*
76793372 AAATAATGAAAAGGGATAG-TCTTGGCTATCAAATTATGAAAAGGGATGGTGACAACCATCCACA
1 AAATAATGAAAAGGGATAGCT-TTGGCTATCAAATTATGAAAAGGGATGGTGACAACCATCAACA
*
76793436 ATGAAAAGGGATGGTGACGACCATC
65 ATGAAAAGGAATGGTGACGACCATC
* * * **
76793461 GAACAATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGATGGTGATGACCATCAACAA
1 AAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATGGTGACAACCATCAACAA
* * *
76793526 TGAAATGTAATGGTGATGACCATC
66 TGAAAAGGAATGGTGACGACCATC
* *
76793550 AAATAATGAGAAGGGATAGCTTTGACTATC
1 AAATAATGAAAAGGGATAGCTTTGGCTATC
76793580 GAGCTGTGAA
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 102 0.99
90 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.22
Consensus pattern (89 bp):
AAATAATGAAAAGGGATAGCTTTGGCTATCAAATTATGAAAAGGGATGGTGACAACCATCAACAA
TGAAAAGGAATGGTGACGACCATC
Found at i:76795438 original size:5 final size:5
Alignment explanation
Indices: 76795428--76795452 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76795418 TTTTTCTTTC
76795428 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
76795453 TTATTATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:76805235 original size:17 final size:17
Alignment explanation
Indices: 76805209--76805371 Score: 98
Period size: 17 Copynumber: 9.6 Consensus size: 17
76805199 ACCTATGACA
*
76805209 ATATACGAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
* * *
76805226 ATATGTGAGCCGTGTGT
1 ATATGCGAGCTGTGTTT
* * * *
76805243 ATAAGCAAGTTTTGTTT
1 ATATGCGAGCTGTGTTT
* * * *
76805260 AGATGTGAGCTATATTT
1 ATATGCGAGCTGTGTTT
*
76805277 ATATGCG-GGTG-GTTTT
1 ATATGCGAGCTGTG-TTT
* * * *
76805293 ATTACGCGAGGTATATTT
1 A-TATGCGAGCTGTGTTT
76805311 ATATGCGAG-TGGTGTTT
1 ATATGCGAGCT-GTGTTT
*
76805328 ATATGCAAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
76805345 ATATGCGAGATTTGTTT
1 ATATGCGAGCTGTGTTT
76805362 ATATGCGAGC
1 ATATGCGAGC
76805372 ACTATATATA
Statistics
Matches: 106, Mismatches: 34, Indels: 12
0.70 0.22 0.08
Matches are distributed among these distances:
16 7 0.07
17 91 0.86
18 8 0.08
ACGTcount: A:0.23, C:0.09, G:0.27, T:0.40
Consensus pattern (17 bp):
ATATGCGAGCTGTGTTT
Found at i:76805459 original size:17 final size:17
Alignment explanation
Indices: 76805393--76805461 Score: 54
Period size: 17 Copynumber: 4.1 Consensus size: 17
76805383 GCGAGTTTTT
*
76805393 TTTATATACTAGTTGTG
1 TTTATATACAAGTTGTG
*
76805410 TTTATA-A-AAGATCTATG
1 TTTATATACAAG-T-TGTG
**
76805427 TTTATATGTGAA-TTGTG
1 TTTATAT-ACAAGTTGTG
76805444 TTTATATACAAGTTGTG
1 TTTATATACAAGTTGTG
76805461 T
1 T
76805462 CAATATGTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
15 2 0.05
16 4 0.10
17 31 0.77
18 1 0.03
20 2 0.05
ACGTcount: A:0.29, C:0.04, G:0.17, T:0.49
Consensus pattern (17 bp):
TTTATATACAAGTTGTG
Found at i:76807349 original size:43 final size:43
Alignment explanation
Indices: 76807185--76807349 Score: 120
Period size: 43 Copynumber: 3.8 Consensus size: 43
76807175 ACATTAGATT
* * * *
76807185 ATCGAGATGTGATTACATGTAAGACCATGTCTGGTACATTGGT
1 ATCGACATGTGATAACATGTAAGACCATGTCTGGGACATTGGC
* *
76807228 ATTG-CATTGTGA-ATACGTGTAAGACCATGTCTGGGACATTGGC
1 ATCGACA-TGTGATA-ACATGTAAGACCATGTCTGGGACATTGGC
** * ** * * * * * *
76807271 ATCGTTAT-TCAATTTCGTGTAAGATCTTTTTTGGGACAATGGC
1 ATCGACATGT-GATAACATGTAAGACCATGTCTGGGACATTGGC
*
76807314 ATCGACATGTGATAACATGTAAGACCATATCTGGGA
1 ATCGACATGTGATAACATGTAAGACCATGTCTGGGA
76807350 TATGCCTTTG
Statistics
Matches: 90, Mismatches: 26, Indels: 12
0.70 0.20 0.09
Matches are distributed among these distances:
42 2 0.02
43 86 0.96
44 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
ATCGACATGTGATAACATGTAAGACCATGTCTGGGACATTGGC
Found at i:76810722 original size:15 final size:15
Alignment explanation
Indices: 76810702--76810731 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
76810692 AAGGTTATTT
76810702 TGCTTTGTATGGTCA
1 TGCTTTGTATGGTCA
76810717 TGCTTTGTATGGTCA
1 TGCTTTGTATGGTCA
76810732 CTGGTGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.27, T:0.47
Consensus pattern (15 bp):
TGCTTTGTATGGTCA
Found at i:76811687 original size:23 final size:23
Alignment explanation
Indices: 76811638--76811687 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
76811628 TTTCACCCTT
* *
76811638 AAAACCCTAAACCTAATTCCTAA
1 AAAAACCTAAACCTAATCCCTAA
*
76811661 AAAAACCTAACCCTAA-CCCTAA
1 AAAAACCTAAACCTAATCCCTAA
*
76811683 CAAAA
1 AAAAA
76811688 TTTAAAAACC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (23 bp):
AAAAACCTAAACCTAATCCCTAA
Found at i:76812191 original size:27 final size:27
Alignment explanation
Indices: 76812143--76812198 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
76812133 GCCAATATCG
*
76812143 TAGGTGGCACCAGTAGTGCCCATGTCA
1 TAGGTGGCACCAGTAGTACCCATGTCA
* *
76812170 TAGGTGGCACTAGTGGTACCCATGTCA
1 TAGGTGGCACCAGTAGTACCCATGTCA
76812197 TA
1 TA
76812199 AGCTGTACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (27 bp):
TAGGTGGCACCAGTAGTACCCATGTCA
Found at i:76816773 original size:16 final size:16
Alignment explanation
Indices: 76816752--76816782 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
76816742 ATATTGTGCT
76816752 TATGTTTCAATTATAG
1 TATGTTTCAATTATAG
76816768 TATGTTTCAATTATA
1 TATGTTTCAATTATA
76816783 AAGGGTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (16 bp):
TATGTTTCAATTATAG
Found at i:76825458 original size:40 final size:40
Alignment explanation
Indices: 76825375--76825675 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
76825365 TTGAATGCTG
* * * * * *
76825375 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
76825415 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
76825455 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
76825495 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
76825535 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
76825575 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
76825615 TCCGGG-TATGT-CCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
76825652 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
76825676 TGAACGAGGA
Statistics
Matches: 236, Mismatches: 20, Indels: 11
0.88 0.07 0.04
Matches are distributed among these distances:
37 17 0.07
38 15 0.06
39 16 0.07
40 180 0.76
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:76833063 original size:40 final size:39
Alignment explanation
Indices: 76832956--76833214 Score: 312
Period size: 39 Copynumber: 6.6 Consensus size: 39
76832946 AAGTGAATAT
* * * * *
76832956 ATCCGGATTAAGATCCGAAGGCCTTTGTG-GAGATACTAA
1 ATCCGGGTTAAG-TCCGAAGGCATTCGTGCGAGTTATTAA
76832995 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
76833034 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TATTAA
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAA
76833073 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTATTAA
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAG-TTATTAA
* *
76833114 ATCCGGGTTAAGTCCGAAGGCAGTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
* * * *
76833153 ATCCGGG-GATGTCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
* *
76833190 AACCGGGCTATA-TCCCGAAGGCATT
1 ATCCGGGTTA-AGT-CCGAAGGCATT
76833215 TGAACGAGGA
Statistics
Matches: 197, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
37 17 0.09
38 29 0.15
39 95 0.48
40 37 0.19
41 19 0.10
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:76836930 original size:26 final size:26
Alignment explanation
Indices: 76836894--76836968 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
76836884 TTTCTCACCC
76836894 CAATTTTACCCCTAGTAAAATTTTGA
1 CAATTTTACCCCTAGTAAAATTTTGA
* *
76836920 CAATCTTACCCTTTA-TAAAATTTTGA
1 CAATTTTACCC-CTAGTAAAATTTTGA
**
76836946 TGATTTTACCCCTAGTAAAATTT
1 CAATTTTACCCCTAGTAAAATTT
76836969 CGAGAAATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 2 0.05
26 37 0.90
27 2 0.05
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (26 bp):
CAATTTTACCCCTAGTAAAATTTTGA
Found at i:76837031 original size:24 final size:24
Alignment explanation
Indices: 76837004--76837054 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
76836994 ACTCAACATG
76837004 TTCACTATAACCGAATAATTTTTT
1 TTCACTATAACCGAATAATTTTTT
*
76837028 TTCACTATAATCGAATAATTTTTT
1 TTCACTATAACCGAATAATTTTTT
76837052 TTC
1 TTC
76837055 CATTTTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.04, T:0.49
Consensus pattern (24 bp):
TTCACTATAACCGAATAATTTTTT
Found at i:76839774 original size:121 final size:121
Alignment explanation
Indices: 76839560--76839806 Score: 422
Period size: 121 Copynumber: 2.0 Consensus size: 121
76839550 TGTCTTTTCG
* * *
76839560 TATTACGATCTAACCACGTAATACCGCTTAGTATTAGTTAAACATTAGACGACCAATGAGCCACA
1 TATTACGATCTAACCACGTAATACCGCTTAGTATCAGTTAAACATTAGACAACCAATAAGCCACA
* * *
76839625 TTTGCTTGCATTTTTCTTTGTGTGCAAAAATCATTTGAGGATAATAATACAAAGTA
66 TTTGCTTCCATTTTGCTTTGTGTGCAAAAATCATTTGAGGACAATAATACAAAGTA
* *
76839681 TATTACGATCTGACCATGTAATACCGCTTAGTATCAGTTAAACATTAGACAACCAATAAGCCACA
1 TATTACGATCTAACCACGTAATACCGCTTAGTATCAGTTAAACATTAGACAACCAATAAGCCACA
76839746 TTTGCTTCCATTTTGCTTTGTGTGCAAAAATCATTTGAGGACAATAATACAAAGTA
66 TTTGCTTCCATTTTGCTTTGTGTGCAAAAATCATTTGAGGACAATAATACAAAGTA
76839802 TATTA
1 TATTA
76839807 GTTGTAATCA
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 118 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (121 bp):
TATTACGATCTAACCACGTAATACCGCTTAGTATCAGTTAAACATTAGACAACCAATAAGCCACA
TTTGCTTCCATTTTGCTTTGTGTGCAAAAATCATTTGAGGACAATAATACAAAGTA
Found at i:76845749 original size:21 final size:21
Alignment explanation
Indices: 76845725--76845774 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
76845715 AATAGCAGTA
*
76845725 AGATTAGTTACTGTAGCGGTG
1 AGATTAGATACTGTAGCGGTG
*
76845746 AGATTGGATACTGTAGCGGTG
1 AGATTAGATACTGTAGCGGTG
*
76845767 AAATTAGA
1 AGATTAGA
76845775 AGCAGCGGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (21 bp):
AGATTAGATACTGTAGCGGTG
Found at i:76851675 original size:16 final size:15
Alignment explanation
Indices: 76851654--76851683 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
76851644 TGGCCCGATC
76851654 ATATTAGTTTTTTTAT
1 ATATTA-TTTTTTTAT
76851670 ATATTATTTTTTTA
1 ATATTATTTTTTTA
76851684 AAAATATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (15 bp):
ATATTATTTTTTTAT
Found at i:76851906 original size:22 final size:22
Alignment explanation
Indices: 76851867--76851909 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
76851857 TATGTAAACA
76851867 ATAATAATAAAATAGTAGCAAC
1 ATAATAATAAAATAGTAGCAAC
* *
76851889 ATAATAGTAAAATGGTAGCAA
1 ATAATAATAAAATAGTAGCAA
76851910 AATAGTGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (22 bp):
ATAATAATAAAATAGTAGCAAC
Found at i:76853387 original size:23 final size:22
Alignment explanation
Indices: 76853361--76853404 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
76853351 TTCTTTTATT
*
76853361 TTAATTACAAAAATTCATATTTG
1 TTAAATACAAAAATT-ATATTTG
* *
76853384 TTAAATATAAATATTATATTT
1 TTAAATACAAAAATTATATTT
76853405 TGATAGCTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (22 bp):
TTAAATACAAAAATTATATTTG
Found at i:76855039 original size:31 final size:31
Alignment explanation
Indices: 76854973--76855045 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
76854963 TTATTTGAAC
* * *
76854973 AATTATAGTCTCTATACTTTTCAACTTGGTC
1 AATTTTAGTCCCTATACTTTTCAACTTGGTA
* *
76855004 AATTTTAGTCCCTATACTTTTCAAATT-TTGA
1 AATTTTAGTCCCTATACTTTTCAACTTGGT-A
76855035 AATTTTAGTCC
1 AATTTTAGTCC
76855046 TAACCTAAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 1 0.03
31 35 0.97
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.47
Consensus pattern (31 bp):
AATTTTAGTCCCTATACTTTTCAACTTGGTA
Found at i:76858234 original size:13 final size:13
Alignment explanation
Indices: 76858216--76858253 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
76858206 ATATAACTCC
76858216 AAAAATATTTAAT
1 AAAAATATTTAAT
76858229 AAAAATATTTTAAT
1 AAAAATA-TTTAAT
76858243 AAAAATATTTA
1 AAAAATATTTA
76858254 CAAATTTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AAAAATATTTAAT
Found at i:76858524 original size:24 final size:24
Alignment explanation
Indices: 76858497--76858542 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
76858487 AAACAACAAA
*
76858497 ACTTAACTTTATGAATTTAACAGC
1 ACTTAACTTTATGAACTTAACAGC
76858521 ACTTAACTTTATGAACTTAACA
1 ACTTAACTTTATGAACTTAACA
76858543 ATTATCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (24 bp):
ACTTAACTTTATGAACTTAACAGC
Found at i:76859228 original size:2 final size:2
Alignment explanation
Indices: 76859221--76859251 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
76859211 CTAAAACTTA
76859221 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76859252 AACAATTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76861216 original size:24 final size:24
Alignment explanation
Indices: 76861171--76861230 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
76861161 ATTTTTCGTA
76861171 AATTT-ATAATTTATAATTTTTAAG
1 AATTTAATAATTTATAATTTTT-AG
76861195 AATTTAATATATTTAT-A-TTTTAG
1 AATTTAATA-ATTTATAATTTTTAG
*
76861218 ATTTTAA-AATTTA
1 AATTTAATAATTTA
76861231 GGCTAACGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
21 5 0.15
22 1 0.03
23 8 0.24
24 9 0.27
25 4 0.12
26 6 0.18
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (24 bp):
AATTTAATAATTTATAATTTTTAG
Found at i:76864484 original size:18 final size:18
Alignment explanation
Indices: 76864435--76864485 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
76864425 TTATACATAT
*
76864435 GTAA-ATAATAATAATTAA
1 GTAATATAAT-ATATTTAA
*
76864453 GTAATACTTA-ATATTTAA
1 GTAATA-TAATATATTTAA
76864471 GTAATATAATATATT
1 GTAATATAATATATT
76864486 ATATTATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 2 0.07
18 22 0.81
19 1 0.04
20 2 0.07
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.41
Consensus pattern (18 bp):
GTAATATAATATATTTAA
Found at i:76864498 original size:15 final size:15
Alignment explanation
Indices: 76864472--76864506 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76864462 AATATTTAAG
*
76864472 TAATATAATATATTA
1 TAATATATTATATTA
*
76864487 TATTATATTATATTA
1 TAATATATTATATTA
76864502 TAATA
1 TAATA
76864507 CTAACATAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TAATATATTATATTA
Found at i:76864600 original size:4 final size:4
Alignment explanation
Indices: 76864578--76864616 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
76864568 ACGAAAATAG
* *
76864578 AGAA GGAA AGAA GGAA AGAA AGAAA AGAA AGAA AGAA AG
1 AGAA AGAA AGAA AGAA AGAA AG-AA AGAA AGAA AGAA AG
76864617 GGAAATTAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (4 bp):
AGAA
Done.