Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 243 of 325
Found at i:76864606 original size:17 final size:17
Alignment explanation
Indices: 76864584--76864616 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76864574 ATAGAGAAGG
*
76864584 AAAGAAGGAAAGAAAGA
1 AAAGAAAGAAAGAAAGA
76864601 AAAGAAAGAAAGAAAG
1 AAAGAAAGAAAGAAAG
76864617 GGAAATTAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (17 bp):
AAAGAAAGAAAGAAAGA
Found at i:76867746 original size:27 final size:28
Alignment explanation
Indices: 76867708--76867767 Score: 113
Period size: 27 Copynumber: 2.2 Consensus size: 28
76867698 AGTAACTATT
76867708 CAAGTAACCGTTCGGGGGGCACTTGTC-
1 CAAGTAACCGTTCGGGGGGCACTTGTCG
76867735 CAAGTAACCGTTCGGGGGGCACTTGTCG
1 CAAGTAACCGTTCGGGGGGCACTTGTCG
76867763 CAAGT
1 CAAGT
76867768 GGCCCAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.22
Consensus pattern (28 bp):
CAAGTAACCGTTCGGGGGGCACTTGTCG
Found at i:76868302 original size:18 final size:18
Alignment explanation
Indices: 76868271--76868308 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
76868261 TAAATTTTTG
76868271 AAAAAAATAATTTATATT
1 AAAAAAATAATTTATATT
* *
76868289 AAAAACATATTTTATATT
1 AAAAAAATAATTTATATT
76868307 AA
1 AA
76868309 CTTACATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAAAAATAATTTATATT
Found at i:76870039 original size:22 final size:22
Alignment explanation
Indices: 76870005--76870052 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
76869995 AAATAACCAG
76870005 AAAA-TTTCCAAATTTCTTTTT
1 AAAATTTTCCAAATTTCTTTTT
*
76870026 AAAATTTTCGAAATTTCTTTTT
1 AAAATTTTCCAAATTTCTTTTT
76870048 AAAAT
1 AAAAT
76870053 AATTTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (22 bp):
AAAATTTTCCAAATTTCTTTTT
Found at i:76870174 original size:38 final size:38
Alignment explanation
Indices: 76870094--76870178 Score: 91
Period size: 37 Copynumber: 2.3 Consensus size: 38
76870084 GAATCAATAT
* * * * **
76870094 TTTTAAAAAATTACAGAGTGAAAAATTTTGGAAAACGA
1 TTTTAAAAAAATACAAACTGAAAAATTTTGAAAAAATA
* *
76870132 -TTTAAAAAAATAGAAACTGATAAATTTTGAAAAAATA
1 TTTTAAAAAAATACAAACTGAAAAATTTTGAAAAAATA
76870169 TTTTAAAAAA
1 TTTTAAAAAA
76870179 TACGAACAGG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
37 29 0.76
38 9 0.24
ACGTcount: A:0.55, C:0.04, G:0.11, T:0.31
Consensus pattern (38 bp):
TTTTAAAAAAATACAAACTGAAAAATTTTGAAAAAATA
Found at i:76883073 original size:38 final size:40
Alignment explanation
Indices: 76882999--76883078 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
76882989 CGAAGCCTTG
*
76882999 ATATGTGGGTGAGAAGTCATTAAAAAAAAAACCTATGGTC
1 ATATGCGGGTGAGAAGTCATTAAAAAAAAAACCTATGGTC
76883039 ATATGCGGGTGAGAAGTCATT-AAAAAAAAA-CTATGGTC
1 ATATGCGGGTGAGAAGTCATTAAAAAAAAAACCTATGGTC
76883077 AT
1 AT
76883079 TTAAAATTCC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 10 0.26
39 9 0.23
40 20 0.51
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (40 bp):
ATATGCGGGTGAGAAGTCATTAAAAAAAAAACCTATGGTC
Found at i:76889802 original size:17 final size:17
Alignment explanation
Indices: 76889782--76889816 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
76889772 TATGTATGAC
76889782 TTTGAAATTGAATGTGA
1 TTTGAAATTGAATGTGA
* *
76889799 TTTGATATTGAATTTGA
1 TTTGAAATTGAATGTGA
76889816 T
1 T
76889817 ACTGTATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (17 bp):
TTTGAAATTGAATGTGA
Found at i:76890193 original size:17 final size:18
Alignment explanation
Indices: 76890160--76890193 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
76890150 AAATATATAT
*
76890160 ATAACCCAATTAGCCCAA
1 ATAACCCAATTACCCCAA
76890178 ATAACCC-ATTACCCCA
1 ATAACCCAATTACCCCA
76890194 GGCTCAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.38, G:0.03, T:0.18
Consensus pattern (18 bp):
ATAACCCAATTACCCCAA
Found at i:76893505 original size:43 final size:42
Alignment explanation
Indices: 76893413--76893517 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 42
76893403 TCGGTTTATT
76893413 CGATGATGCACTATGTGTGCCAGTATAATTACTTTGATTCATC
1 CGATGATGCACTATGTGTGCCAGTATAATTACTTTGATTCA-C
* * *
76893456 CAATGATGCACCT-TGTGTGCCAGTTTAATTACTTTGGCTTGC-C
1 CGATGATGCA-CTATGTGTGCCAGTATAATTACTTT-GATT-CAC
* *
76893499 CGATGATGTACTATTTGTG
1 CGATGATGCACTATGTGTG
76893518 TCAAGTATCA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.04
43 44 0.85
44 5 0.10
45 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (42 bp):
CGATGATGCACTATGTGTGCCAGTATAATTACTTTGATTCAC
Found at i:76896601 original size:46 final size:47
Alignment explanation
Indices: 76896497--76896671 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 47
76896487 GGATATTGTG
* *
76896497 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGAGATGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGAGATGA
* * *
76896544 GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGACCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGAGATG-A
* * *
76896591 AGCCAATGTAAGA-CATGTCTGGGACAT-ACATCG-GCTATGAGATG-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-TGAGATGA
76896635 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
76896672 ATCCTACCCC
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
44 12 0.11
45 16 0.15
46 54 0.50
47 14 0.13
48 12 0.11
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGAGATGA
Found at i:76899449 original size:29 final size:28
Alignment explanation
Indices: 76899376--76899458 Score: 89
Period size: 28 Copynumber: 2.9 Consensus size: 28
76899366 TGGTGCAAAT
76899376 AATGATAAGCACTGAAGTGCAAA--ATA
1 AATGATAAGCACTGAAGTGCAAATTATA
* * *
76899402 ATATCAATAAGCACCGAAGTGCAAATTTTA
1 A-AT-GATAAGCACTGAAGTGCAAATTATA
76899432 CAATGATAAGCACTGAAGTGCGAAATT
1 -AATGATAAGCACTGAAGTGC-AAATT
76899459 GTAATACCTC
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.02
27 2 0.04
28 18 0.39
29 15 0.33
30 9 0.20
31 1 0.02
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23
Consensus pattern (28 bp):
AATGATAAGCACTGAAGTGCAAATTATA
Found at i:76902294 original size:19 final size:19
Alignment explanation
Indices: 76902257--76902295 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
76902247 ATCATCCATT
76902257 TTCATTTTGTATATGCATA
1 TTCATTTTGTATATGCATA
*
76902276 TTCATCTTTTTATAT-CATA
1 TTCAT-TTTGTATATGCATA
76902295 T
1 T
76902296 GAACATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.56
Consensus pattern (19 bp):
TTCATTTTGTATATGCATA
Found at i:76905106 original size:28 final size:27
Alignment explanation
Indices: 76905064--76905151 Score: 97
Period size: 29 Copynumber: 3.1 Consensus size: 27
76905054 TAAGCACATG
* *
76905064 AAGCACTGAAGTGCAAAATAATATCTAT
1 AAGCACCGAAGTGCAAAATAATA-CGAT
* *
76905092 AAGCACCGAATTGCAAATTTTACA-ACGAT
1 AAGCACCGAAGTGCAAA--ATA-ATACGAT
76905121 AAGCACCGAAGTGCAAAATAATACGAT
1 AAGCACCGAAGTGCAAAATAATACGAT
76905148 AAGC
1 AAGC
76905152 GCGCTAATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.02
27 11 0.22
28 15 0.30
29 19 0.38
30 3 0.06
31 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.20
Consensus pattern (27 bp):
AAGCACCGAAGTGCAAAATAATACGAT
Found at i:76918223 original size:21 final size:22
Alignment explanation
Indices: 76918199--76918247 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
76918189 CCAATTCAAG
*
76918199 ATCATGTGCCGGGTAATT-TTT
1 ATCATGTGCCAGGTAATTCTTT
*
76918220 ATCATGTGTCAGGTAATTCTTT
1 ATCATGTGCCAGGTAATTCTTT
76918242 -TCATGT
1 ATCATGT
76918248 AGCTTTAGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.20, C:0.14, G:0.20, T:0.45
Consensus pattern (22 bp):
ATCATGTGCCAGGTAATTCTTT
Found at i:76921035 original size:19 final size:20
Alignment explanation
Indices: 76921011--76921060 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
76921001 GTAATAGTAA
*
76921011 ATACATGTGTA-AAAATAAT
1 ATACATATGTATAAAATAAT
*
76921030 ATACATATGTATAAATTAAT
1 ATACATATGTATAAAATAAT
*
76921050 A-AAATATGTAT
1 ATACATATGTAT
76921061 TACCTAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.36
Consensus pattern (20 bp):
ATACATATGTATAAAATAAT
Found at i:76921206 original size:22 final size:22
Alignment explanation
Indices: 76921139--76921209 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
76921129 ACAAATAAAT
*
76921139 AGAAAAAGA-AACAGAGATAGAA
1 AGAAAAAGAGAA-AGAGAAAGAA
** * *
76921161 ACTAAAACAGAAAGGGAAAGAA
1 AGAAAAAGAGAAAGAGAAAGAA
76921183 AGAAAAAGAGAAAGAGAAAGAA
1 AGAAAAAGAGAAAGAGAAAGAA
76921205 AGAAA
1 AGAAA
76921210 GGAGAAATTA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 37 0.95
23 2 0.05
ACGTcount: A:0.69, C:0.04, G:0.24, T:0.03
Consensus pattern (22 bp):
AGAAAAAGAGAAAGAGAAAGAA
Found at i:76921907 original size:7 final size:7
Alignment explanation
Indices: 76921891--76921931 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
76921881 ATTTGTGATT
76921891 AATGTGA
1 AATGTGA
*
76921898 AATGTAA
1 AATGTGA
76921905 AATGTGA
1 AATGTGA
*
76921912 AATGTTA
1 AATGTGA
76921919 AATGTGA
1 AATGTGA
76921926 AATGTG
1 AATGTG
76921932 GATATTGGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (7 bp):
AATGTGA
Found at i:76921910 original size:14 final size:14
Alignment explanation
Indices: 76921891--76921930 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
76921881 ATTTGTGATT
76921891 AATGTGAAATGTAA
1 AATGTGAAATGTAA
*
76921905 AATGTGAAATGTTA
1 AATGTGAAATGTAA
76921919 AATGTGAAATGT
1 AATGTGAAATGT
76921931 GGATATTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.33
Consensus pattern (14 bp):
AATGTGAAATGTAA
Found at i:76935801 original size:24 final size:24
Alignment explanation
Indices: 76935752--76935801 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
76935742 GAGAAGTAAT
* *
76935752 TAAAATATATTTTTATATTTAAAA
1 TAAAATATATTATTATATATAAAA
76935776 TAAAATATATTATTAT-TATAATAA
1 TAAAATATATTATTATATATAA-AA
76935800 TA
1 TA
76935802 TTTTTATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TAAAATATATTATTATATATAAAA
Found at i:76940184 original size:45 final size:44
Alignment explanation
Indices: 76940120--76940417 Score: 236
Period size: 45 Copynumber: 6.7 Consensus size: 44
76940110 TCTACTGCAA
* * **
76940120 CTGCTCCACTGCAACTTCAGGGAGATACGG-TTGTGTATTTTTAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGATTGTG-ACTTAGAT
* * *
76940164 CCTGCTCTACTGTAACTTCAGAGAGATAAGGATTGTGACTTAGAT
1 -CTGCTCCACTGCAACTTCAGGGAGATAAGGATTGTGACTTAGAT
*
76940209 CTGCTCCACTGCAACTTCAGGGAGATAA-GATCTGCTAACTTCAG-T
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGAT-TG-TGACTT-AGAT
* * *
76940254 CTGCTCCACTGCAACTTCAGGGAGATAA-GACTTGGGTAATGT-CAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGA-TTGTG-ACT-TAGAT
* * * * *
76940299 CCTGCTCTACTACAACTTCAGAGAGATAAGGATTGTGGCTTTGAT
1 -CTGCTCCACTGCAACTTCAGGGAGATAAGGATTGTGACTTAGAT
* *
76940344 CTGCTCCACTGCAACCTCAGGGAGACAA-GATCTGCT-ATCTTCA-AT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGAT-TG-TGA-CTT-AGAT
*
76940389 CTGTTCCACTGCAAC-TCTAGGGAGATAAG
1 CTGCTCCACTGCAACTTC-AGGGAGATAAG
76940418 ACTTGTTTCT
Statistics
Matches: 205, Mismatches: 31, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.03
44 55 0.27
45 104 0.51
46 38 0.19
47 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGGATTGTGACTTAGAT
Found at i:76940271 original size:89 final size:89
Alignment explanation
Indices: 76940120--76940460 Score: 224
Period size: 89 Copynumber: 3.8 Consensus size: 89
76940110 TCTACTGCAA
* * * ** * * *
76940120 CTGCTCCACTGCAACTTCAGGGAGATACGGTTGTGTATTTTTATCCTGCTCTACTGTAACTTCAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTGTCTAACTTCATCCTGCTCCACTGCAACTTCAG
76940185 AGAGATAAGGATTGTGACTTAGAT
66 AGAGATAAGGATTGTGACTTAGAT
76940209 CTGCTCCACTGCAACTTCAGGGAGATAAGATCTG-CTAACTTCAGT-CTGCTCCACTGCAACTTC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTCTAACTTCA-TCCTGCTCCACTGCAACTTC
* * * *
76940272 AGGGAGATAA-GACTTGGGTAATGT-CAT
64 AGAGAGATAAGGA-TTGTG-ACT-TAGAT
* * * * *
76940299 CCTGCTCTACTACAACTTCAGAGAGATAAGGATTGTGGCT---TTGAT-CTGCTCCACTGCAACC
1 -CTGCTCCACTGCAACTTCAGGGAGATAA-GATTGT--CTAACTTCATCCTGCTCCACTGCAACT
* *
76940360 TCAGGGAGACAA-GATCTGCT-ATCTTCA-AT
62 TCAGAGAGATAAGGAT-TG-TGA-CTT-AGAT
* * * ** *
76940389 CTGTTCCACTGCAAC-TCTAGGGAGATAAGACTTGT-T-TCTTCAACCCACTCTACTGCAACTTC
1 CTGCTCCACTGCAACTTC-AGGGAGATAAGA-TTGTCTAACTTCATCCTGCTCCACTGCAACTTC
76940451 AGAGAGATAA
64 AGAGAGATAA
76940461 AGTTTGCATA
Statistics
Matches: 200, Mismatches: 32, Indels: 40
0.74 0.12 0.15
Matches are distributed among these distances:
86 1 0.00
88 9 0.05
89 113 0.56
90 41 0.20
91 31 0.16
92 3 0.01
94 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (89 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATTGTCTAACTTCATCCTGCTCCACTGCAACTTCAG
AGAGATAAGGATTGTGACTTAGAT
Found at i:76940364 original size:135 final size:135
Alignment explanation
Indices: 76940120--76940422 Score: 448
Period size: 135 Copynumber: 2.3 Consensus size: 135
76940110 TCTACTGCAA
* * * * * * **
76940120 CTGCTCCACTGCAACTTCAGGGAGATACG-GTTGTGTATTTTTATCCTGCTCTACTGTAACTTCA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGGGTAATGTCATCCTGCTCTACTACAACTTCA
* *
76940184 GAGAGATAAGGATTGTGACTTAGATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACT
66 GAGAGATAAGGATTGTGACTTAGATCTGCTCCACTGCAACCTCAGGGAGACAAGATCTGCTAACT
*
76940249 TCAGT
131 TCAAT
76940254 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGGGTAATGTCATCCTGCTCTACTACAACTTCA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGGGTAATGTCATCCTGCTCTACTACAACTTCA
* * *
76940319 GAGAGATAAGGATTGTGGCTTTGATCTGCTCCACTGCAACCTCAGGGAGACAAGATCTGCTATCT
66 GAGAGATAAGGATTGTGACTTAGATCTGCTCCACTGCAACCTCAGGGAGACAAGATCTGCTAACT
76940384 TCAAT
131 TCAAT
*
76940389 CTGTTCCACTGCAAC-TCTAGGGAGATAAGACTTG
1 CTGCTCCACTGCAACTTC-AGGGAGATAAGACTTG
76940423 TTTCTTCAAC
Statistics
Matches: 152, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
134 30 0.20
135 122 0.80
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (135 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGGGTAATGTCATCCTGCTCTACTACAACTTCA
GAGAGATAAGGATTGTGACTTAGATCTGCTCCACTGCAACCTCAGGGAGACAAGATCTGCTAACT
TCAAT
Found at i:76940457 original size:135 final size:135
Alignment explanation
Indices: 76940120--76940460 Score: 429
Period size: 135 Copynumber: 2.5 Consensus size: 135
76940110 TCTACTGCAA
* * * * * * * ** *
76940120 CTGCTCCACTGCAACTTCAGGGAGATACG-GTTGTGTATTTTTATCCTGCTCTACTGTAACTTCA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGGGTAATGTCAACCCACTCTACTGCAACTTCA
* *
76940184 GAGAGATAAGGATTGTGACTTAGATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAACT
66 GAGAGATAAGGATTGTGACTTAGATCTGCTCCACTGCAACCTCAGGGAGACAAGATCTGCTAACT
*
76940249 TCAGT
131 TCAAT
* ** *
76940254 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGGGTAATGTCATCCTGCTCTACTACAACTTCA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGGGTAATGTCAACCCACTCTACTGCAACTTCA
* * *
76940319 GAGAGATAAGGATTGTGGCTTTGATCTGCTCCACTGCAACCTCAGGGAGACAAGATCTGCTATCT
66 GAGAGATAAGGATTGTGACTTAGATCTGCTCCACTGCAACCTCAGGGAGACAAGATCTGCTAACT
76940384 TCAAT
131 TCAAT
* * **
76940389 CTGTTCCACTGCAAC-TCTAGGGAGATAAGACTT-GTTTCT-TCAACCCACTCTACTGCAACTTC
1 CTGCTCCACTGCAACTTC-AGGGAGATAAGACTTGGGTAATGTCAACCCACTCTACTGCAACTTC
76940451 AGAGAGATAA
65 AGAGAGATAA
76940461 AGTTTGCATA
Statistics
Matches: 183, Mismatches: 22, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
133 29 0.16
134 33 0.18
135 121 0.66
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (135 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGGGTAATGTCAACCCACTCTACTGCAACTTCA
GAGAGATAAGGATTGTGACTTAGATCTGCTCCACTGCAACCTCAGGGAGACAAGATCTGCTAACT
TCAAT
Found at i:76948765 original size:35 final size:35
Alignment explanation
Indices: 76948726--76948794 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
76948716 CTTTTTCCCT
76948726 TATCCATTCTTCTTATCAACAACTGGGACAACTAA
1 TATCCATTCTTCTTATCAACAACTGGGACAACTAA
*
76948761 TATCCATTCTTCTTATCAGCAACTGGGACAACTA
1 TATCCATTCTTCTTATCAACAACTGGGACAACTA
76948795 GCTCATCATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (35 bp):
TATCCATTCTTCTTATCAACAACTGGGACAACTAA
Found at i:76953599 original size:12 final size:12
Alignment explanation
Indices: 76953584--76953618 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
76953574 AATAATATAC
*
76953584 AAAAAAAATTAT
1 AAAAAATATTAT
76953596 AAAAAATATTAT
1 AAAAAATATTAT
*
76953608 ACAAAATATTA
1 AAAAAATATTA
76953619 AAATGATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAAAATATTAT
Found at i:76957950 original size:12 final size:13
Alignment explanation
Indices: 76957932--76957961 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
76957922 GATTAATTTT
76957932 CTAAAAATAAAAA
1 CTAAAAATAAAAA
76957945 -TAAAAATAAAAA
1 CTAAAAATAAAAA
76957957 CTAAA
1 CTAAA
76957962 TTCTAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17
Consensus pattern (13 bp):
CTAAAAATAAAAA
Found at i:76963905 original size:43 final size:42
Alignment explanation
Indices: 76963814--76963934 Score: 118
Period size: 43 Copynumber: 2.9 Consensus size: 42
76963804 AACTTATGAT
* * * ** *
76963814 TTACGTGTAAGACTACGTCT-GGACGTTGGCATCGTATTTAA
1 TTACATGTAAGACCATGTCTGGGACAATGGCATTGTATTTAA
* * * *
76963855 TTTCATGTAAGACCTTGTTTGGGACAATGGCATTGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAATGGCATTG-TATTTAA
**
76963898 TTACATGTAAGACCATGTCTGGGACGTTGGCATTGTA
1 TTACATGTAAGACCATGTCTGGGACAATGGCATTGTA
76963935 CGAGCTTTCT
Statistics
Matches: 63, Mismatches: 15, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
41 14 0.22
42 13 0.21
43 36 0.57
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACAATGGCATTGTATTTAA
Found at i:76964690 original size:10 final size:10
Alignment explanation
Indices: 76964650--76964692 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
76964640 TATTGAAACA
*
76964650 TATGCTTTGG
1 TATGATTTGG
76964660 TATGATTTTGG
1 TATGA-TTTGG
*
76964671 TTTAGATTTGG
1 TAT-GATTTGG
76964682 TATGATTTGG
1 TATGATTTGG
76964692 T
1 T
76964693 TGGTGAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 12 0.43
11 14 0.50
12 2 0.07
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.53
Consensus pattern (10 bp):
TATGATTTGG
Found at i:76967764 original size:26 final size:26
Alignment explanation
Indices: 76967735--76967807 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
76967725 TCTCATCTCC
*
76967735 ATTTTACCCCTAGTAAAATTTTGACG
1 ATTTTACCCCTAGTAAAATTTTAACG
*
76967761 ATTTTACCCCTGGTAAAATTTTAACG
1 ATTTTACCCCTAGTAAAATTTTAACG
*
76967787 ATTTTGCCCCTAGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
76967808 CAAGAAAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTAACG
Found at i:76977139 original size:23 final size:23
Alignment explanation
Indices: 76977113--76977227 Score: 117
Period size: 23 Copynumber: 4.9 Consensus size: 23
76977103 ACAGCTCGTA
*
76977113 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
76977136 AGAGCTTACCGATTCAGCTCGAA-
1 AGAGCTTACTGTTTCAGCTC-AAT
76977159 AGAGCTTACTG-TTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
76977181 AGAGCTTACCGTTTTCAGTTCAAT
1 AGAGCTTACTG-TTTCAGCTCAAT
* *
76977205 GGACCTTACTGTTTATCAGCTCA
1 AGAGCTTACTG-TT-TCAGCTCA
76977228 GGAGGAGCTT
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
21 2 0.03
22 18 0.23
23 28 0.36
24 22 0.29
25 7 0.09
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:76977198 original size:46 final size:46
Alignment explanation
Indices: 76977104--76977191 Score: 151
Period size: 45 Copynumber: 1.9 Consensus size: 46
76977094 AGACTCACCA
* *
76977104 CAGCTCGTAAGAGCTTACTGTTTCAGCTCATTAGAGCTTACCGATT
1 CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATT
76977150 CAGCTCGAAAGAGCTTACTG-TTCAGCTCAATAGAGCTTACCG
1 CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCG
76977192 TTTTCAGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 21 0.52
46 19 0.47
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (46 bp):
CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATT
Found at i:76977213 original size:46 final size:45
Alignment explanation
Indices: 76977104--76977217 Score: 131
Period size: 46 Copynumber: 2.5 Consensus size: 45
76977094 AGACTCACCA
* * *
76977104 CAGCTCGTAAGAGCTTACTGTTTCAGCTCATTAGAGCTTACCGATT
1 CAGCTCGAAAGACCTTACTG-TTCAGCTCAATAGAGCTTACCGATT
* *
76977150 CAGCTCGAAAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGTTTT
1 CAGCTCGAAAGACCTTACTGTTCAGCTCAATAGAGCTTACCG-ATT
* *
76977196 CAGTTC-AATGGACCTTACTGTT
1 CAGCTCGAA-AGACCTTACTGTT
76977218 TATCAGCTCA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
45 23 0.38
46 37 0.62
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (45 bp):
CAGCTCGAAAGACCTTACTGTTCAGCTCAATAGAGCTTACCGATT
Found at i:76978428 original size:10 final size:10
Alignment explanation
Indices: 76978401--76978440 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
76978391 TTAAATTCTA
76978401 AAAGATAAAT
1 AAAGATAAAT
76978411 ACAA-ATAAAT
1 A-AAGATAAAT
*
76978421 AAAGATAATT
1 AAAGATAAAT
76978431 AAAGATAAAT
1 AAAGATAAAT
76978441 GGAAATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:76979108 original size:18 final size:18
Alignment explanation
Indices: 76979074--76979107 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76979064 TACATCTATT
*
76979074 TTTTTTTCTATTTTTTTC
1 TTTTTTCCTATTTTTTTC
76979092 TTTTTTCCT-TTTTTTT
1 TTTTTTCCTATTTTTTT
76979108 TAAAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTCCTATTTTTTTC
Found at i:76979311 original size:99 final size:99
Alignment explanation
Indices: 76979127--76979415 Score: 422
Period size: 99 Copynumber: 2.9 Consensus size: 99
76979117 TTTAATTAAT
* * * *
76979127 TAATTTATCTAT-TTTTGCTTAAGAATAAATTGAACCTTTTGACGTGAAGAGAGATGACAGCCAA
1 TAATTTAT-TATATTTTTCTTAAGAATATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAA
76979191 GCATCC-CACCACGGTTACTCAGCCCAAGATACTCC
65 GCA-CCTCACCACGGTTACTCAGCCCAAGATACTCC
*
76979226 TAATTTATTATATTTTTCTTAAGAATATGTCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAG
1 TAATTTATTATATTTTTCTTAAGAATATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAG
* * *
76979291 CACCTCACTC-CGATTGCTCAGCCCAATATACTCC
66 CACCTCAC-CACGGTTACTCAGCCCAAGATACTCC
* * *
76979325 TAATTTATTATATTTTTCTTAAGAATATATCAAACCTTTTGACGCAAAGAGAGATGATAGCCAAG
1 TAATTTATTATATTTTTCTTAAGAATATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAG
*
76979390 CACCTCACCTCGGTTACTCAGCCCAA
66 CACCTCACCACGGTTACTCAGCCCAA
76979416 CACATTCTTA
Statistics
Matches: 172, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
98 6 0.03
99 165 0.96
100 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (99 bp):
TAATTTATTATATTTTTCTTAAGAATATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAG
CACCTCACCACGGTTACTCAGCCCAAGATACTCC
Found at i:76980434 original size:25 final size:24
Alignment explanation
Indices: 76980406--76980454 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
76980396 ATATCCAAAC
*
76980406 AAAATAAAATAATAAATAATAAAAT
1 AAAATAAAATAAAAAATAA-AAAAT
* *
76980431 AAAATAGAGTAAAAAATAAAAAAT
1 AAAATAAAATAAAAAATAAAAAAT
76980455 TTACGTTACG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (24 bp):
AAAATAAAATAAAAAATAAAAAAT
Found at i:76980911 original size:89 final size:89
Alignment explanation
Indices: 76980780--76980965 Score: 354
Period size: 89 Copynumber: 2.1 Consensus size: 89
76980770 GTATCCATAG
*
76980780 GAGCCAATAATTCATTAATAGATTCAAAATCATTAAACATCATTTTAGATTTATCTCCATAAGAT
1 GAGCCAATAATTCATTAATAGATTCAAAATCATCAAACATCATTTTAGATTTATCTCCATAAGAT
76980845 GACTTAAAAGTTTCTTCTACTAAT
66 GACTTAAAAGTTTCTTCTACTAAT
76980869 GAGCCAATAATTCATTAATAGATTCAAAATCATCAAACATCATTTTAGATTTATCTCCATAAGAT
1 GAGCCAATAATTCATTAATAGATTCAAAATCATCAAACATCATTTTAGATTTATCTCCATAAGAT
76980934 GACTTAAAAGTTTCTTCTACTAAT
66 GACTTAAAAGTTTCTTCTACTAAT
*
76980958 GAGTCAAT
1 GAGCCAAT
76980966 TATGTCGACA
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 95 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (89 bp):
GAGCCAATAATTCATTAATAGATTCAAAATCATCAAACATCATTTTAGATTTATCTCCATAAGAT
GACTTAAAAGTTTCTTCTACTAAT
Found at i:76991101 original size:42 final size:42
Alignment explanation
Indices: 76991042--76991159 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 42
76991032 AGGGTTAGTT
76991042 GAGATTACATGTAAGACCATATCTGGGATATGGAATCGATAC
1 GAGATTACATGTAAGACCATATCTGGGATATGGAATCGATAC
* * * * *
76991084 GAGATTTCATGTAAGACCATAGCTGGGCTATTGGTATCGATAT
1 GAGATTACATGTAAGACCATATCTGGGATA-TGGAATCGATAC
* ** *
76991127 AAGATCCCATGTAAGACCATATCTAGGATATGG
1 GAGATTACATGTAAGACCATATCTGGGATATGG
76991160 CATTGGTATG
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATCTGGGATATGGAATCGATAC
Found at i:76998592 original size:30 final size:30
Alignment explanation
Indices: 76998551--76998607 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
76998541 AATTTGCATC
* *
76998551 TTTGGTAAAATGACCATTTTGCCCCTAAAT
1 TTTGATAAAATGACCATTTTACCCCTAAAT
76998581 TTTGATAAAATGACCATTTTACCCCTA
1 TTTGATAAAATGACCATTTTACCCCTA
76998608 GGCCCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (30 bp):
TTTGATAAAATGACCATTTTACCCCTAAAT
Found at i:77001485 original size:6 final size:6
Alignment explanation
Indices: 77001474--77001514 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
77001464 GAAAATGGAT
77001474 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
77001515 TTGGAAACCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.17, C:0.32, G:0.00, T:0.51
Consensus pattern (6 bp):
CATTTC
Found at i:77005675 original size:22 final size:22
Alignment explanation
Indices: 77005650--77005700 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
77005640 TGATTTCAAT
*
77005650 ATGAGATG-AAATTGAAATGAGA
1 ATGAGATGAAAATGGAAATG-GA
*
77005672 ATGATATGAAAATGGAAATGGA
1 ATGAGATGAAAATGGAAATGGA
77005694 ATG-GATG
1 ATGAGATG
77005701 TTATAGTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 3 0.12
22 12 0.48
23 10 0.40
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (22 bp):
ATGAGATGAAAATGGAAATGGA
Found at i:77011310 original size:8 final size:8
Alignment explanation
Indices: 77011297--77011330 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
77011287 TTGTGTGTTC
77011297 TTTATTTT
1 TTTATTTT
*
77011305 TTTATTCT
1 TTTATTTT
77011313 TTTATTCTT
1 TTTATT-TT
77011322 TTTATTTT
1 TTTATTTT
77011330 T
1 T
77011331 CATAGAGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTATTTT
Found at i:77011580 original size:28 final size:28
Alignment explanation
Indices: 77011540--77011598 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
77011530 CAACAATAAA
77011540 TCTGAAAGAGGAAATATGCGTTGTTCTT
1 TCTGAAAGAGGAAATATGCGTTGTTCTT
*
77011568 TCTGAAAGAGGAAATATGTGTTGTTCTT
1 TCTGAAAGAGGAAATATGCGTTGTTCTT
77011596 TCT
1 TCT
77011599 TGGCATTGTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (28 bp):
TCTGAAAGAGGAAATATGCGTTGTTCTT
Found at i:77013009 original size:56 final size:55
Alignment explanation
Indices: 77012949--77013053 Score: 138
Period size: 56 Copynumber: 1.9 Consensus size: 55
77012939 TCCTCTTAAT
** * *
77012949 TGTTGAAATGTTGCTTCTTTTGAATATATTTTTTTATATATTTAAATCGATTGTCA
1 TGTTGAAATACTGCTTCTTTTGAATAGA-TTATTTATATATTTAAATCGATTGTCA
* * *
77013005 TGTTGGAATACTGCTTCTTTTGAATCGATTATTTATATGTTTAAATCGA
1 TGTTGAAATACTGCTTCTTTTGAATAGATTATTTATATATTTAAATCGA
77013054 CTGTTACATG
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
55 19 0.45
56 23 0.55
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.50
Consensus pattern (55 bp):
TGTTGAAATACTGCTTCTTTTGAATAGATTATTTATATATTTAAATCGATTGTCA
Found at i:77013402 original size:41 final size:41
Alignment explanation
Indices: 77013305--77013436 Score: 113
Period size: 41 Copynumber: 3.2 Consensus size: 41
77013295 AACCTTGTAG
* *
77013305 GCTTCGTGCTAGTGTAACGATTTTGGCCTTGAGCCTAGCAA
1 GCTTCGTGCTAGTGTAACGATTTAGGCCTTGAGCCTAGTAA
* * * * ** * *
77013346 ACCTCATACCGGTGTAACGATTTAAGCCTTGAGCCTAGTAC
1 GCTTCGTGCTAGTGTAACGATTTAGGCCTTGAGCCTAGTAA
* * * * *
77013387 GCTTCGTGCTTGTGT-ATGAAATCAGGCCTTGAGCCTAGTAG
1 GCTTCGTGCTAGTGTAACG-ATTTAGGCCTTGAGCCTAGTAA
77013428 GCTTCGTGC
1 GCTTCGTGC
77013437 CAATTTAGTG
Statistics
Matches: 69, Mismatches: 21, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
40 2 0.03
41 67 0.97
ACGTcount: A:0.20, C:0.23, G:0.26, T:0.30
Consensus pattern (41 bp):
GCTTCGTGCTAGTGTAACGATTTAGGCCTTGAGCCTAGTAA
Found at i:77018032 original size:131 final size:131
Alignment explanation
Indices: 77017798--77018356 Score: 632
Period size: 131 Copynumber: 4.3 Consensus size: 131
77017788 TTACTTTATC
*
77017798 TATCATGAATAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
1 TATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
** * * * * * *
77017863 AAGATTGCAGCTGATATCGTTAAGGTTCGTTGATTTAAGATCACAACTTAAGTTCATTCAATTTA
66 AAGATCACAGCTAATATCATTAAGGTTCATTAATTTAAGATCACAACCTAAGTTTATTCAATTTA
77017928 A
131 A
* * *
77017929 TATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCACTACTTCAAACAACTCATTGATTT
1 TATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
*** * * **
77017994 AAGATTGTAGCTAATATCATTAAGGTTCATTAATTTAAGACCACAACCTAAGTTAATTTGATTTA
66 AAGATCACAGCTAATATCATTAAGGTTCATTAATTTAAGATCACAACCTAAGTTTATTCAATTTA
77018059 A
131 A
* * * *
77018060 TATCATGAACAATCTTATTTAAGTTAGCTAATTTAATATTGCTACTCCAAACAACTCGCTGATTT
1 TATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
* * * ** * *** * * **
77018125 AATATCACAACTAATTTTTGTTAAGGTTCACTAATTTAAGATTGTAGCTTAAGTTTATTTGATTT
66 AAGATCACAGCTAA-TATCATTAAGGTTCATTAATTTAAGATCACAACCTAAGTTTATTCAATTT
77018190 AA
130 AA
* * * * * * ** *
77018192 TATTATCAACAATCATATTTGAGTTAGCTAATTTACTATCGCTACTCCAAATAGTTCGCTGATTT
1 TATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
* * * * * *
77018257 AAGATCATAGTTGACATCATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTTATTCAATTTA
66 AAGATCACAGCTAATATCATTAAGGTTCATTAATTTAAGATCACAACCTAAGTTTATTCAATTTA
77018322 A
131 A
* *
77018323 TATCATGAACAATCTCATTTGTGTTAGCTGATTT
1 TATCATGAACAATCTTATTTGAGTTAGCTGATTT
77018357 TCCAAACAAT
Statistics
Matches: 356, Mismatches: 71, Indels: 2
0.83 0.17 0.00
Matches are distributed among these distances:
131 250 0.70
132 106 0.30
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (131 bp):
TATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
AAGATCACAGCTAATATCATTAAGGTTCATTAATTTAAGATCACAACCTAAGTTTATTCAATTTA
A
Found at i:77018278 original size:263 final size:262
Alignment explanation
Indices: 77017798--77018356 Score: 686
Period size: 263 Copynumber: 2.1 Consensus size: 262
77017788 TTACTTTATC
*
77017798 TATCATGAATAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
1 TATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
** * * ** *
77017863 AAGATTGCAGCTGATATCGTTAAGGTTCGTTGATTTAAGATCACAACTTAAGTTCATTCAATTTA
66 AAGATCACAACTAATATCGTTAAGGTTCACTAATTTAAGATCACAACTTAAGTTCATTCAATTTA
* * * * *
77017928 ATATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCACTACTTCAAACAACTCATTGATT
131 ATATCATCAACAATCATATTTGAGTTAGCTAATTTAATATCACTACTCCAAACAACTCACTGATT
** * **
77017993 TAAGATTGTAGCTAATATCATTAAGGTTCATTAATTTAAGACCACAACCTAAGTTAATTTGATTT
196 TAAGATCATAGCTAACATCATTAAGGTTCATTAATTTAAGACCACAACCTAAGTTAATTCAATTT
77018058 AA
261 AA
* * * *
77018060 TATCATGAACAATCTTATTTAAGTTAGCTAATTTAATATTGCTACTCCAAACAACTCGCTGATTT
1 TATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
* * * *** * * **
77018125 AATATCACAACTAATTTTTGTTAAGGTTCACTAATTTAAGATTGTAGCTTAAGTTTATTTGATTT
66 AAGATCACAACTAA-TATCGTTAAGGTTCACTAATTTAAGATCACAACTTAAGTTCATTCAATTT
* * * * ** *
77018190 AATATTATCAACAATCATATTTGAGTTAGCTAATTTACTATCGCTACTCCAAATAGTTCGCTGAT
130 AATATCATCAACAATCATATTTGAGTTAGCTAATTTAATATCACTACTCCAAACAACTCACTGAT
* * * * * *
77018255 TTAAGATCATAGTTGACATCATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTTATTCAATT
195 TTAAGATCATAGCTAACATCATTAAGGTTCATTAATTTAAGACCACAACCTAAGTTAATTCAATT
77018320 TAA
260 TAA
* *
77018323 TATCATGAACAATCTCATTTGTGTTAGCTGATTT
1 TATCATGAACAATCTTATTTGAGTTAGCTGATTT
77018357 TCCAAACAAT
Statistics
Matches: 247, Mismatches: 49, Indels: 1
0.83 0.16 0.00
Matches are distributed among these distances:
262 69 0.28
263 178 0.72
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (262 bp):
TATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCGCTACTCCAAACAACTCACTGATTT
AAGATCACAACTAATATCGTTAAGGTTCACTAATTTAAGATCACAACTTAAGTTCATTCAATTTA
ATATCATCAACAATCATATTTGAGTTAGCTAATTTAATATCACTACTCCAAACAACTCACTGATT
TAAGATCATAGCTAACATCATTAAGGTTCATTAATTTAAGACCACAACCTAAGTTAATTCAATTT
AA
Found at i:77022194 original size:25 final size:25
Alignment explanation
Indices: 77022165--77022214 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
77022155 CTTAATTGTG
77022165 AAAAAGTTTAGAATTAGGGTTTGGT
1 AAAAAGTTTAGAATTAGGGTTTGGT
77022190 AAAAAGTTTAGAATTAGGGTTTGGT
1 AAAAAGTTTAGAATTAGGGTTTGGT
77022215 GCTAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (25 bp):
AAAAAGTTTAGAATTAGGGTTTGGT
Found at i:77022376 original size:30 final size:30
Alignment explanation
Indices: 77022342--77022410 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
77022332 TGTAAAACTT
77022342 GGCATAAATGTGTAATTTTGAAAATTGAAG
1 GGCATAAATGTGTAATTTTGAAAATTGAAG
77022372 GGCATAAATGTGTAATTTTGAAAATTGAAG
1 GGCATAAATGTGTAATTTTGAAAATTGAAG
77022402 GGCATAAAT
1 GGCATAAAT
77022411 TGTTAAGTGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.32
Consensus pattern (30 bp):
GGCATAAATGTGTAATTTTGAAAATTGAAG
Found at i:77024746 original size:14 final size:14
Alignment explanation
Indices: 77024727--77024754 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77024717 CAAAATACGA
77024727 CTCATTTCTTCCTC
1 CTCATTTCTTCCTC
77024741 CTCATTTCTTCCTC
1 CTCATTTCTTCCTC
77024755 GTTAGTGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.43, G:0.00, T:0.50
Consensus pattern (14 bp):
CTCATTTCTTCCTC
Found at i:77033441 original size:12 final size:12
Alignment explanation
Indices: 77033424--77033448 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
77033414 TGTGAAAAAT
77033424 AAAATAAAATAA
1 AAAATAAAATAA
77033436 AAAATAAAATAA
1 AAAATAAAATAA
77033448 A
1 A
77033449 GAAACACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:77034311 original size:42 final size:42
Alignment explanation
Indices: 77034247--77034335 Score: 135
Period size: 42 Copynumber: 2.1 Consensus size: 42
77034237 TCCTAATTGG
* *
77034247 GAAAATAGTTCCATTGTTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCATTGTCCTAATAAACTACTAAAAGATAAAA
77034289 GAAAATAGTTTCC-TTGTCCTAATAAACTACTAAAAGATAAAA
1 GAAAATAG-TTCCATTGTCCTAATAAACTACTAAAAGATAAAA
*
77034331 TAAAA
1 GAAAA
77034336 ATATTCCTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 39 0.91
43 4 0.09
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCATTGTCCTAATAAACTACTAAAAGATAAAA
Found at i:77034382 original size:19 final size:18
Alignment explanation
Indices: 77034360--77034399 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
77034350 TGAATAAAAC
77034360 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
77034379 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
77034397 TTA
1 TTA
77034400 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:77038247 original size:42 final size:42
Alignment explanation
Indices: 77038183--77038271 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
77038173 TCCTAATTGG
* *
77038183 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
* *
77038225 GAAAATAGTTCTCTTGTCCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
77038267 TAAAA
1 GAAAA
77038272 ATATTCCTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
Found at i:77038316 original size:19 final size:18
Alignment explanation
Indices: 77038292--77038335 Score: 79
Period size: 19 Copynumber: 2.4 Consensus size: 18
77038282 AATATGAATA
77038292 AAATTTATCTACCTAAAT
1 AAATTTATCTACCTAAAT
77038310 AAGATTTATCTACCTAAAT
1 AA-ATTTATCTACCTAAAT
77038329 AAATTTA
1 AAATTTA
77038336 AAATATATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (18 bp):
AAATTTATCTACCTAAAT
Found at i:77044079 original size:6 final size:6
Alignment explanation
Indices: 77044070--77044099 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
77044060 GAATTTTATT
77044070 TTTTTA TTTTTA TTTTTA TTTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTT
77044100 TGCAAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (6 bp):
TTTTTA
Found at i:77044079 original size:7 final size:7
Alignment explanation
Indices: 77044063--77044100 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
77044053 TTCAATTGAA
77044063 TTTTATT
1 TTTTATT
77044070 TTTT-TAT
1 TTTTAT-T
77044077 TTTTA-T
1 TTTTATT
77044083 TTTTATT
1 TTTTATT
77044090 TTTTATT
1 TTTTATT
77044097 TTTT
1 TTTT
77044101 GCAAAAACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
6 7 0.25
7 21 0.75
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTATT
Found at i:77044085 original size:13 final size:14
Alignment explanation
Indices: 77044063--77044099 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
77044053 TTCAATTGAA
*
77044063 TTTTATTTTTTTAT
1 TTTTATTTTTATAT
77044077 TTTTATTTTTAT-T
1 TTTTATTTTTATAT
77044090 TTTTATTTTT
1 TTTTATTTTT
77044100 TGCAAAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTATTTTTATAT
Found at i:77044100 original size:20 final size:20
Alignment explanation
Indices: 77044063--77044099 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
77044053 TTCAATTGAA
77044063 TTTTATTTTTTTATTTTTAT
1 TTTTATTTTTTTATTTTTAT
77044083 TTTTA-TTTTTTATTTTT
1 TTTTATTTTTTTATTTTT
77044100 TGCAAAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (20 bp):
TTTTATTTTTTTATTTTTAT
Found at i:77054581 original size:53 final size:54
Alignment explanation
Indices: 77054398--77054607 Score: 246
Period size: 55 Copynumber: 3.9 Consensus size: 54
77054388 ATTAGGGCTT
*
77054398 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGA
* * * **
77054453 AAGGATATCATGTAAGACCACGTCAAGACATGGCATTCATAAGTTTCTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGG-A
* * * *
77054509 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTCAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGA
* * *
77054561 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC
77054608 CAAAGGATGC
Statistics
Matches: 129, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 4 0.03
53 43 0.33
54 12 0.09
55 65 0.50
56 5 0.04
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGA
Found at i:77054604 original size:108 final size:110
Alignment explanation
Indices: 77054405--77054607 Score: 304
Period size: 108 Copynumber: 1.9 Consensus size: 110
77054395 CTTAAGGATA
*
77054405 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGA
*
77054470 CCACGTCAAGACATGGCATTCATAAGTTTCTATAAGGAAAAGGTC
66 CCACGTCAAGACATGGCAATCATAAGTTTCTATAAGGAAAAGGTC
* *
77054515 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTCA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGAAAGGATACCATGTAAG
* * **
77054577 ACCATGTCGAGACATGGCAATGGTAAGTTTC
65 ACCACGTCAAGACATGGCAATCATAAGTTTC
77054608 CAAAGGATGC
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGA
CCACGTCAAGACATGGCAATCATAAGTTTCTATAAGGAAAAGGTC
Found at i:77054642 original size:49 final size:49
Alignment explanation
Indices: 77054561--77054654 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 49
77054551 TTCATAAGGC
* * * *
77054561 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTCCA
1 AAGGATACCACGTAAGACCATGACAAGACATGGAAATGGTAAGTTTCCA
* *
77054610 AAGGATGCCACGTAAGACCATGACAAGTCATGGAAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGACAAGACATGGAAATGGTAAGTT
77054655 ACCCGTGTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (49 bp):
AAGGATACCACGTAAGACCATGACAAGACATGGAAATGGTAAGTTTCCA
Found at i:77054866 original size:16 final size:16
Alignment explanation
Indices: 77054845--77054875 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77054835 ATAAATTTGA
77054845 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
77054861 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
77054876 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:77058169 original size:46 final size:47
Alignment explanation
Indices: 77058088--77058247 Score: 218
Period size: 46 Copynumber: 3.5 Consensus size: 47
77058078 GTTTGCCTCC
* *
77058088 TGAAAGATACCATGGCAACCTGATAT-AAAATGAATAAGACCATGGT
1 TGAAAGATACCATGGCAACATGACATGAAAATGAATAAGACCATGGT
*
77058134 TGAAAGATACCATGGCAACGTGACATGAAAA-GAATAAGACCATGGT
1 TGAAAGATACCATGGCAACATGACATGAAAATGAATAAGACCATGGT
* *
77058180 TGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGT
1 TGAAAGATACCATGGCAACATGACATGAAAATGAATAAGACCATGGT
* * * *
77058226 TTAAAGACACTATGGCATCATG
1 TGAAAGATACCATGGCAACATG
77058248 TCAAAGATAA
Statistics
Matches: 103, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
45 5 0.05
46 94 0.91
47 4 0.04
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (47 bp):
TGAAAGATACCATGGCAACATGACATGAAAATGAATAAGACCATGGT
Found at i:77062710 original size:46 final size:45
Alignment explanation
Indices: 77062631--77062800 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 45
77062621 TGAAACCCGC
** *
77062631 CCATAAGTGAACTCGGACTCAACTCAAAAAGCTCAGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGTAT
* *
77062677 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGTA--T
* * * * * *
77062723 ACATCTCA-CGAACTCGGACTCAACCCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGTAT
*
77062770 CCATAAGTGAACTCGAACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
77062801 TTCAGATGCC
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 56 0.57
47 29 0.29
48 2 0.02
49 4 0.04
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGTAT
Found at i:77062798 original size:93 final size:93
Alignment explanation
Indices: 77062639--77062810 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
77062629 GCCCATAAGT
* * * *
77062639 GAACTCGGACTCAACTCAAAAAGCTCAGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAAAAAGCTCAGGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
77062704 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCAGATGCCTAGTTACATCTCAC
** *
77062732 GAACTCGGACTCAACCCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 GAACTCGGACTCAACCCAAAAAGCTCAGG-CATTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
77062796 ACGAGTTCAGATGCC
65 ACGAGCTCAGATGCC
77062811 CAAATATCCC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACCCAAAAAGCTCAGGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCAC
Found at i:77065235 original size:30 final size:30
Alignment explanation
Indices: 77065191--77065279 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
77065181 CAAAGATAAC
*
77065191 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
77065220 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
77065250 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
77065280 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:77065239 original size:15 final size:14
Alignment explanation
Indices: 77065191--77065273 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
77065181 CAAAGATAAC
*
77065191 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
77065205 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
77065220 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
77065235 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
77065250 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
77065265 AAGAAACCC
1 AAGAAACCC
77065274 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:77065279 original size:15 final size:15
Alignment explanation
Indices: 77065202--77065279 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
77065192 AGAAAACCGA
77065202 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
77065217 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
77065231 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
77065246 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
77065262 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
77065277 ATA
1 ATA
77065280 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:77068310 original size:93 final size:93
Alignment explanation
Indices: 77068197--77068370 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
77068187 GCCCATAAGT
* *
77068197 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77068262 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
77068290 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
77068355 CGAGTTCGGATGCCTA
66 CGAGCTCGGATGCCTA
77068371 AATATCCCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:77068364 original size:46 final size:46
Alignment explanation
Indices: 77068189--77068364 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
77068179 TGTAACCCGC
* *
77068189 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
77068235 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * * *
77068285 -C-TCA-CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
77068328 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
77068365 TGCCTAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:77073332 original size:23 final size:22
Alignment explanation
Indices: 77073294--77073406 Score: 90
Period size: 22 Copynumber: 5.0 Consensus size: 22
77073284 CCTAAGCTGA
77073294 TGAACAAG-AAGCTCTAATGAGC
1 TGAAC-AGTAAGCTCTAATGAGC
* *
77073316 TGAAACGGTAAGCTCT-ATCGAGT
1 TG-AACAGTAAGCTCTAAT-GAGC
* * *
77073339 TGAACAATAAGCTCTATTGAGA
1 TGAACAGTAAGCTCTAATGAGC
77073361 TGAACAGTAAGCTCATACA--AGC
1 TGAACAGTAAGCTC-TA-ATGAGC
*
77073383 TGAAACAGTAAGCTCCAATGAGC
1 TG-AACAGTAAGCTCTAATGAGC
77073406 T
1 T
77073407 AAAAATAGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 17
0.73 0.10 0.17
Matches are distributed among these distances:
21 1 0.01
22 37 0.51
23 34 0.47
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAATGAGC
Found at i:77073351 original size:45 final size:44
Alignment explanation
Indices: 77073294--77073406 Score: 120
Period size: 45 Copynumber: 2.5 Consensus size: 44
77073284 CCTAAGCTGA
* * * *
77073294 TGAACAAGAAGCTCTAATGAGCTGAAACGGTAAGCTC-TATCGAGT
1 TGAACAATAAGCTCTAATGAGCTG-AACAGTAAGCTCATA-CAAGC
* *
77073339 TGAACAATAAGCTCTATTGAGATGAACAGTAAGCTCATACAAGC
1 TGAACAATAAGCTCTAATGAGCTGAACAGTAAGCTCATACAAGC
* *
77073383 TGAAACAGTAAGCTCCAATGAGCT
1 TG-AACAATAAGCTCTAATGAGCT
77073407 AAAAATAGTA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
44 16 0.29
45 40 0.71
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (44 bp):
TGAACAATAAGCTCTAATGAGCTGAACAGTAAGCTCATACAAGC
Found at i:77073429 original size:24 final size:24
Alignment explanation
Indices: 77073366--77073453 Score: 72
Period size: 24 Copynumber: 3.6 Consensus size: 24
77073356 TGAGATGAAC
* * *
77073366 AGTAAGCTCATACAAGCT-GAAAC
1 AGTAAGCTCATACGAGCTAAAAAT
*
77073389 AGTAAGCTCCA-ATGAGCTAAAAAT
1 AGTAAGCT-CATACGAGCTAAAAAT
* * *
77073413 AGTAAGCTCTTACGAGCTGATATAT
1 AGTAAGCTCATACGAGCT-AAAAAT
77073438 CAGTAAGCTCATACGA
1 -AGTAAGCTCATACGA
77073454 TCTGTGGTGA
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
23 14 0.27
24 19 0.37
25 4 0.08
26 14 0.27
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (24 bp):
AGTAAGCTCATACGAGCTAAAAAT
Found at i:77079453 original size:16 final size:17
Alignment explanation
Indices: 77079432--77079471 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
77079422 TATGAACATT
*
77079432 AGACACAAACAAT-ATA
1 AGACACAAACAATAACA
*
77079448 AGACACAAGCAATAACA
1 AGACACAAACAATAACA
77079465 AGACACA
1 AGACACA
77079472 TAATGACGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.60, C:0.23, G:0.10, T:0.07
Consensus pattern (17 bp):
AGACACAAACAATAACA
Found at i:77083961 original size:32 final size:32
Alignment explanation
Indices: 77083920--77083980 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
77083910 TGGTAAGCCG
* *
77083920 TGTGCGAGACACGAGCTCGATAAATTGGGCCA
1 TGTGCGAGACACGAGCTCAAAAAATTGGGCCA
*
77083952 TGTGCGAGACACGGGCTCAAAAAATTGGG
1 TGTGCGAGACACGAGCTCAAAAAATTGGG
77083981 TCGTGTGGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.33, T:0.18
Consensus pattern (32 bp):
TGTGCGAGACACGAGCTCAAAAAATTGGGCCA
Found at i:77084474 original size:40 final size:40
Alignment explanation
Indices: 77084409--77084484 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
77084399 CGGTACTTTA
* *
77084409 TGGTGTGTAGGGTTGGATGGATCGATTTTATCCCCATATT
1 TGGTGTATAGGGATGGATGGATCGATTTTATCCCCATATT
* *
77084449 TGGTGTATAGGGATGGGTGGGTCGATTTTATCCCCA
1 TGGTGTATAGGGATGGATGGATCGATTTTATCCCCA
77084485 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.17, C:0.13, G:0.33, T:0.37
Consensus pattern (40 bp):
TGGTGTATAGGGATGGATGGATCGATTTTATCCCCATATT
Found at i:77084491 original size:38 final size:38
Alignment explanation
Indices: 77084408--77084492 Score: 107
Period size: 40 Copynumber: 2.2 Consensus size: 38
77084398 ACGGTACTTT
* * *
77084408 ATGGTGTGTAGGGTTGGATGGATCGATTTTATCCCCAT
1 ATGGTGTATAGGGATGGATGGATCGATTTTATCCCCAC
* *
77084446 ATTTGGTGTATAGGGATGGGTGGGTCGATTTTATCCCCAC
1 A--TGGTGTATAGGGATGGATGGATCGATTTTATCCCCAC
77084486 ATGGTGT
1 ATGGTGT
77084493 GTTGCGTTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 7 0.17
40 33 0.82
ACGTcount: A:0.18, C:0.13, G:0.33, T:0.36
Consensus pattern (38 bp):
ATGGTGTATAGGGATGGATGGATCGATTTTATCCCCAC
Found at i:77093376 original size:17 final size:17
Alignment explanation
Indices: 77093354--77093387 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
77093344 GGCTCCCAAG
77093354 AACCATCAATGACCGAT
1 AACCATCAATGACCGAT
77093371 AACCATCAATGACCGAT
1 AACCATCAATGACCGAT
77093388 CAACGAAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.29, G:0.12, T:0.18
Consensus pattern (17 bp):
AACCATCAATGACCGAT
Found at i:77097365 original size:23 final size:23
Alignment explanation
Indices: 77097321--77097365 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77097311 AGTATATAAT
* *
77097321 ATTATATATTTAAATTTTAAATG
1 ATTATATATTTAAATGTAAAATG
77097344 ATTATAT-TTTAATATGTAAAAT
1 ATTATATATTTAA-ATGTAAAAT
77097366 ATAGTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (23 bp):
ATTATATATTTAAATGTAAAATG
Found at i:77102851 original size:4 final size:4
Alignment explanation
Indices: 77102842--77102866 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
77102832 TCAATTGATT
77102842 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
77102867 CCTTCATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:77103044 original size:22 final size:22
Alignment explanation
Indices: 77103020--77103060 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
77103010 ATAAAATTAA
77103020 AAAAG-AAAAAAGAATCAATCC
1 AAAAGTAAAAAAGAATCAATCC
*
77103041 AAAAGTAATAAAGAATCAAT
1 AAAAGTAAAAAAGAATCAAT
77103061 TCATTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.66, C:0.10, G:0.10, T:0.15
Consensus pattern (22 bp):
AAAAGTAAAAAAGAATCAATCC
Found at i:77105425 original size:29 final size:28
Alignment explanation
Indices: 77105392--77105466 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 28
77105382 AATAAAAATA
77105392 AATAAAAGTTATAAAAAT-TATTAAATTTT
1 AATAAAA-TTATAAAAATAT-TTAAATTTT
* *
77105421 AATAAAAATATAAGAAATATTTAATTTTT
1 AATAAAATTATAA-AAATATTTAAATTTT
* *
77105450 ATTAAAAATTAGAAAAA
1 AAT-AAAATTATAAAAA
77105467 ATAATAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
28 5 0.13
29 24 0.63
30 9 0.24
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (28 bp):
AATAAAATTATAAAAATATTTAAATTTT
Found at i:77105441 original size:28 final size:29
Alignment explanation
Indices: 77105392--77105458 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
77105382 AATAAAAATA
*
77105392 AATAAAAGTTATAAAAATTA-TTAAATTTT
1 AATAAAA-ATATAAAAATTATTTAAATTTT
*
77105421 AATAAAAATATAAGAAA-TATTTAATTTTT
1 AATAAAAATATAA-AAATTATTTAAATTTT
*
77105450 ATTAAAAAT
1 AATAAAAAT
77105459 TAGAAAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 7 0.21
29 26 0.79
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (29 bp):
AATAAAAATATAAAAATTATTTAAATTTT
Found at i:77105823 original size:17 final size:18
Alignment explanation
Indices: 77105801--77105834 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
77105791 TTTTATAAAA
77105801 TTTTACAAT-TTTATATT
1 TTTTACAATGTTTATATT
77105818 TTTTACAATGTTTATAT
1 TTTTACAATGTTTATAT
77105835 ATATTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTACAATGTTTATATT
Found at i:77105903 original size:21 final size:21
Alignment explanation
Indices: 77105856--77105904 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
77105846 ATTTTTAGTA
* *
77105856 AATTTTTTAAAAAATTTTTAT
1 AATTTTTTAAAAAAGTTTAAT
* **
77105877 ATTTTTTTATTAAAGTTTAAT
1 AATTTTTTAAAAAAGTTTAAT
77105898 AATTTTT
1 AATTTTT
77105905 ATAATTTTTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
AATTTTTTAAAAAAGTTTAAT
Found at i:77105938 original size:9 final size:9
Alignment explanation
Indices: 77105777--77105939 Score: 89
Period size: 9 Copynumber: 17.0 Consensus size: 9
77105767 TATGCATTTA
77105777 ATAATTTTT
1 ATAATTTTT
*
77105786 ATGATTTTT
1 ATAATTTTT
*
77105795 ATAAAATTTT
1 AT-AATTTTT
*
77105805 ACAA-TTTT
1 ATAATTTTT
*
77105813 ATATTTTTT
1 ATAATTTTT
*
77105822 ACAATGTTTAT
1 ATAAT-TTT-T
77105833 ATATATTTTT
1 ATA-ATTTTT
*
77105843 CTAATTTTT
1 ATAATTTTT
77105852 AGTAAATTTTTT
1 A-T-AA-TTTTT
*
77105864 AAAAAATTTTT
1 --ATAATTTTT
*
77105875 ATATTTTTTT
1 ATA-ATTTTT
* *
77105885 ATTAAAGTTTA
1 A-T-AATTTTT
77105896 ATAATTTTT
1 ATAATTTTT
77105905 ATAATTTTT
1 ATAATTTTT
*
77105914 ATTGATTTTT
1 A-TAATTTTT
77105924 AT--TTTTT
1 ATAATTTTT
77105931 ATAATTTTT
1 ATAATTTTT
77105940 TTGCCACATG
Statistics
Matches: 118, Mismatches: 20, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
7 7 0.06
8 6 0.05
9 48 0.41
10 28 0.24
11 18 0.15
12 10 0.08
14 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.63
Consensus pattern (9 bp):
ATAATTTTT
Found at i:77106706 original size:14 final size:15
Alignment explanation
Indices: 77106687--77106715 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
77106677 TTGTAGATAT
77106687 TATATATA-TAAAAA
1 TATATATACTAAAAA
77106701 TATATATACTAAAAA
1 TATATATACTAAAAA
77106716 CTTTTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
TATATATACTAAAAA
Found at i:77110567 original size:15 final size:16
Alignment explanation
Indices: 77110549--77110578 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77110539 AATATCTATT
77110549 TAATTA-CTAAAAATC
1 TAATTATCTAAAAATC
77110564 TAATTATCTAAAAAT
1 TAATTATCTAAAAAT
77110579 AAAAAAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATTATCTAAAAATC
Found at i:77111970 original size:13 final size:13
Alignment explanation
Indices: 77111952--77111982 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
77111942 CATGTAAATT
77111952 ATTTTTTATAATA
1 ATTTTTTATAATA
*
77111965 ATTTTTTATCATA
1 ATTTTTTATAATA
77111978 ATTTT
1 ATTTT
77111983 AGAAATTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (13 bp):
ATTTTTTATAATA
Found at i:77113548 original size:20 final size:20
Alignment explanation
Indices: 77113502--77113553 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
77113492 GTGTGGTTAC
*
77113502 ACACGCCTGTGTGGCTTGGG
1 ACACGCTTGTGTGGCTTGGG
77113522 ACACGCTTGTGTGGCTTGGG
1 ACACGCTTGTGTGGCTTGGG
*
77113542 ACACGCTCGTGT
1 ACACGCTTGTGT
77113554 CTTCAGCCCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.12, C:0.25, G:0.37, T:0.27
Consensus pattern (20 bp):
ACACGCTTGTGTGGCTTGGG
Found at i:77115418 original size:28 final size:28
Alignment explanation
Indices: 77115386--77115469 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
77115376 AACTGTGATC
77115386 ACGTGTGTAGTACTAAGTGAAGGCTACT
1 ACGTGTGTAGTACTAAGTGAAGGCTACT
* * *
77115414 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGAAGGCTACT
*
77115436 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGAAGGCTACT
77115464 ACGTGT
1 ACGTGT
77115470 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGAAGGCTACT
Found at i:77115448 original size:50 final size:49
Alignment explanation
Indices: 77115338--77115526 Score: 216
Period size: 50 Copynumber: 3.8 Consensus size: 49
77115328 TGAGGTCGCA
* * * * * *
77115338 TGTGTAGTATTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* * **
77115389 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* *
77115439 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
77115488 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
77115527 GCTTTGGCTA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 42 0.36
50 45 0.38
51 31 0.26
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:77122762 original size:46 final size:45
Alignment explanation
Indices: 77122693--77122779 Score: 138
Period size: 46 Copynumber: 1.9 Consensus size: 45
77122683 ATGTGTTAGA
*
77122693 AAATTTTTATGTGAGCATAAATATAAAATGATTTGGGCCTAATGGG
1 AAATTTGTATGTGAGCATAAATATAAAATGATTT-GGCCTAATGGG
* *
77122739 AAATTTGTATGTGAGCATGAATATAATATGATTTGGCCTAA
1 AAATTTGTATGTGAGCATAAATATAAAATGATTTGGCCTAA
77122780 CGGGCCATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
45 7 0.18
46 31 0.82
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.36
Consensus pattern (45 bp):
AAATTTGTATGTGAGCATAAATATAAAATGATTTGGCCTAATGGG
Found at i:77122796 original size:45 final size:46
Alignment explanation
Indices: 77122701--77122797 Score: 124
Period size: 46 Copynumber: 2.1 Consensus size: 46
77122691 GAAAATTTTT
* * *
77122701 ATGTGAGCATAAATATAAAATGATTTGGGCCTAATGGGAAATTTGT
1 ATGTGAGCATAAATATAAAATGATTTGGGCCTAACGGGAAATATGA
* * **
77122747 ATGTGAGCATGAATATAATATGATTT-GGCCTAACGGGCCATATGA
1 ATGTGAGCATAAATATAAAATGATTTGGGCCTAACGGGAAATATGA
77122792 ATGTGA
1 ATGTGA
77122798 ATTGAGCCTA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 20 0.45
46 24 0.55
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (46 bp):
ATGTGAGCATAAATATAAAATGATTTGGGCCTAACGGGAAATATGA
Found at i:77122841 original size:29 final size:29
Alignment explanation
Indices: 77122781--77122845 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
77122771 TTGGCCTAAC
* * *
77122781 GGGCCATATGAATGTGAATTGAGCCTAGT
1 GGGCCATAAGAATATGAACTGAGCCTAGT
*
77122810 GGGCCATAAGAATATGAACTGGGCC-AGAT
1 GGGCCATAAGAATATGAACTGAGCCTAG-T
77122839 GGGCCAT
1 GGGCCAT
77122846 TTGGATAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 2 0.06
29 29 0.94
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (29 bp):
GGGCCATAAGAATATGAACTGAGCCTAGT
Found at i:77126275 original size:22 final size:22
Alignment explanation
Indices: 77126248--77126298 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
77126238 AACCTTTTTA
*
77126248 CTTTCCCCCAATACTGTTACTT
1 CTTTCCCCCAAAACTGTTACTT
* *
77126270 CTTTCCCCTAAAACTTTTACTT
1 CTTTCCCCCAAAACTGTTACTT
77126292 CTTTCCC
1 CTTTCCC
77126299 ATCCCACCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.18, C:0.37, G:0.02, T:0.43
Consensus pattern (22 bp):
CTTTCCCCCAAAACTGTTACTT
Found at i:77133853 original size:27 final size:26
Alignment explanation
Indices: 77133816--77133930 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
77133806 AGCATGGCTG
* *
77133816 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
77133842 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
77133870 CCAGAACAGATATATGTGGGAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** * *
77133897 CCAGATTAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
77133924 CCAGAAC
1 CCAGAAC
77133931 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.07
27 54 0.71
28 17 0.22
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:77133880 original size:54 final size:54
Alignment explanation
Indices: 77133816--77133930 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
77133806 AGCATGGCTG
*
77133816 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
** * * * *
77133870 CCAGAACAGATATATGTGGGAGAGCCACCAGATTAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
77133924 CCAGAAC
1 CCAGAAC
77133931 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:77135582 original size:26 final size:26
Alignment explanation
Indices: 77135546--77135653 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
77135536 CATGAAATTC
77135546 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
77135572 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
77135598 TTATCAT-AGAACATTTACCTAACCTA
1 TTATCATGA-AACATTTACCTAACCCA
* *
77135624 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
77135650 TTAT
1 TTAT
77135654 TAATTTGTAT
Statistics
Matches: 78, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
25 1 0.01
26 77 0.99
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:77136660 original size:56 final size:56
Alignment explanation
Indices: 77136574--77136693 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
77136564 ACAAGGGATG
77136574 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
77136630 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
77136686 ATGGGCAA
1 ATGGGCAA
77136694 TAAAATAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:77138059 original size:40 final size:40
Alignment explanation
Indices: 77137822--77138045 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
77137812 CGAATGATGT
* * * * *
77137822 CCGGGCTAAGCCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
77137862 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
77137902 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
77137940 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
77137981 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
77138021 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
77138046 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 34 0.21
40 120 0.74
41 9 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:77138067 original size:119 final size:119
Alignment explanation
Indices: 77137821--77138078 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
77137811 TCGAATGATG
* * *
77137821 TCCGGGCTAAGCCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* **
77137886 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
77137940 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * * *
77138003 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
77138060 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77138079 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:77142384 original size:27 final size:26
Alignment explanation
Indices: 77142347--77142461 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
77142337 AGCATGGCTG
* *
77142347 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
77142373 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
77142401 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
77142428 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
77142455 TCAGAAC
1 CCAGAAC
77142462 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 57 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:77142411 original size:54 final size:54
Alignment explanation
Indices: 77142347--77142461 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
77142337 AGCATGGCTG
*
77142347 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
77142401 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
*
77142455 TCAGAAC
1 CCAGAAC
77142462 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:77144115 original size:26 final size:26
Alignment explanation
Indices: 77144079--77144214 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
77144069 CATGAAATTC
77144079 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
77144105 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
77144131 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
77144157 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
77144183 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
77144209 TTATCA
1 TTATCA
77144215 ATTTGTATCA
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 108 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:77148994 original size:9 final size:10
Alignment explanation
Indices: 77148961--77148996 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
77148951 GCCACAATCC
77148961 AATAACACTAA
1 AATAA-ACTAA
77148972 AATAAACTAA
1 AATAAACTAA
77148982 AATAAAC-AA
1 AATAAACTAA
77148991 AATAAA
1 AATAAA
77148997 AAATAACAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 8 0.32
10 12 0.48
11 5 0.20
ACGTcount: A:0.72, C:0.11, G:0.00, T:0.17
Consensus pattern (10 bp):
AATAAACTAA
Found at i:77154744 original size:12 final size:13
Alignment explanation
Indices: 77154722--77154750 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
77154712 TAAATAAATG
77154722 AATTAAAAAGCCA
1 AATTAAAAAGCCA
77154735 AATT-AAAAGCCA
1 AATTAAAAAGCCA
77154747 AATT
1 AATT
77154751 TTGTCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:77155622 original size:42 final size:42
Alignment explanation
Indices: 77155563--77155726 Score: 197
Period size: 42 Copynumber: 3.9 Consensus size: 42
77155553 TTAGGGTTAC
* *
77155563 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCTATA
1 TGAGATTACGTGTAAGACCATATCTAGGATATAGCATCTATA
* * * * *
77155605 TGAGATTTCGTGTAAGACCATATTTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTAGGATATAGCATCTATA
*
77155647 TGAGACTT-CGTGTAAGACCATATCTAGGCTATTAGCAT-TGATA
1 TGAGA-TTACGTGTAAGACCATATCTAGGATA-TAGCATCT-ATA
* *
77155690 CGAGATTACATGTAAGACCATATCTAGGATATAGCAT
1 TGAGATTACGTGTAAGACCATATCTAGGATATAGCAT
77155727 TGGTACGGTA
Statistics
Matches: 107, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
42 72 0.67
43 35 0.33
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTAGGATATAGCATCTATA
Found at i:77155720 original size:85 final size:84
Alignment explanation
Indices: 77155563--77155726 Score: 206
Period size: 85 Copynumber: 1.9 Consensus size: 84
77155553 TTAGGGTTAC
* * * * *
77155563 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCTATATGAGATTTCGTGTAAGACCATAT
1 TGAGATTACGTGTAAGACCATATCTAGGATATAGCATCTATACGAGATTACATGTAAGACCATAT
* * *
77155628 TTGGGATATGGCATCGATA
66 CTAGGATATAGCATCGATA
*
77155647 TGAGACTT-CGTGTAAGACCATATCTAGGCTATTAGCAT-TGATACGAGATTACATGTAAGACCA
1 TGAGA-TTACGTGTAAGACCATATCTAGGATA-TAGCATCT-ATACGAGATTACATGTAAGACCA
77155710 TATCTAGGATATAGCAT
63 TATCTAGGATATAGCAT
77155727 TGGTACGGTA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
84 27 0.40
85 41 0.60
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (84 bp):
TGAGATTACGTGTAAGACCATATCTAGGATATAGCATCTATACGAGATTACATGTAAGACCATAT
CTAGGATATAGCATCGATA
Found at i:77159716 original size:21 final size:21
Alignment explanation
Indices: 77159692--77159750 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
77159682 TTTAGATCTC
77159692 ATGAGCTTCTGTTTAACTCAT
1 ATGAGCTTCTGTTTAACTCAT
* * * * *
77159713 ATGAGTTTTTGTTCAGCTCTT
1 ATGAGCTTCTGTTTAACTCAT
* *
77159734 TTGAGCTTCTGCTTAAC
1 ATGAGCTTCTGTTTAAC
77159751 ACTTATGGGT
Statistics
Matches: 27, Mismatches: 11, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.46
Consensus pattern (21 bp):
ATGAGCTTCTGTTTAACTCAT
Found at i:77159769 original size:42 final size:42
Alignment explanation
Indices: 77159693--77159775 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
77159683 TTAGATCTCA
* * **
77159693 TGAGCTTCTGTTTAACTCATATGAGTTTTTGTTCAGCTCTTT
1 TGAGCTTCTGCTTAACACATATGAGTTTCCGTTCAGCTCTTT
* *
77159735 TGAGCTTCTGCTTAACACTTATGGGTTTCCGTTCAGCTCTT
1 TGAGCTTCTGCTTAACACATATGAGTTTCCGTTCAGCTCTT
77159776 ACAAGCTTCC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.16, C:0.20, G:0.18, T:0.46
Consensus pattern (42 bp):
TGAGCTTCTGCTTAACACATATGAGTTTCCGTTCAGCTCTTT
Found at i:77170561 original size:23 final size:20
Alignment explanation
Indices: 77170520--77170580 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
77170510 ACCATTTAAT
*
77170520 ATCAAAAAATTCATGAATTC
1 ATCAAAAAATTCATAAATTC
77170540 ATCAACAAAATCTCATAAAATT-
1 ATCAA-AAAAT-TCAT-AAATTC
* * *
77170562 ATTAAAAATTTCATGAATT
1 ATCAAAAAATTCATAAATT
77170581 TAGGCATGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
19 4 0.12
20 9 0.26
21 9 0.26
22 8 0.24
23 4 0.12
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (20 bp):
ATCAAAAAATTCATAAATTC
Found at i:77172785 original size:29 final size:28
Alignment explanation
Indices: 77172744--77172895 Score: 128
Period size: 29 Copynumber: 5.4 Consensus size: 28
77172734 GTAAGCATGG
*
77172744 ATAT-AATGTGATTTGGGCCGGATAGGCC
1 ATATAAATGTGA-TTGGGCCGGATGGGCC
* ** *
77172772 ATATAAATGAGATTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCGGATGGGCC
* * *
77172800 ATATGAATGTGAATTGGGCCTGATTGGCC
1 ATATAAATGTG-ATTGGGCCGGATGGGCC
* * *
77172829 ATATGAACGTGAATTGGGTCGGATGGGCC
1 ATATAAATGTG-ATTGGGCCGGATGGGCC
* *
77172858 ATATAAATGAGATTGGGCC-TAGTGGGCC
1 ATATAAATGTGATTGGGCCGGA-TGGGCC
*
77172886 ATATACATGT
1 ATATAAATGT
77172896 ATGTAGGGGT
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
27 1 0.01
28 46 0.46
29 53 0.53
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCGGATGGGCC
Found at i:77177207 original size:18 final size:18
Alignment explanation
Indices: 77177184--77177219 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
77177174 TGAATAGGCC
77177184 AAATGGGCCAGATGGGCT
1 AAATGGGCCAGATGGGCT
*
77177202 AAATGGGCCCGATGGGCT
1 AAATGGGCCAGATGGGCT
77177220 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.39, T:0.17
Consensus pattern (18 bp):
AAATGGGCCAGATGGGCT
Found at i:77177373 original size:29 final size:29
Alignment explanation
Indices: 77177308--77177440 Score: 112
Period size: 29 Copynumber: 4.7 Consensus size: 29
77177298 ATTTGGGCTG
* * *
77177308 GATGGGCCATATAAATG-AGATTGGGCCT
1 GATGGGCCATATGAATGTAAATTAGGCCT
* *
77177336 AACGGGCCATATGAATGTAAATTAGGCCT
1 GATGGGCCATATGAATGTAAATTAGGCCT
* * *
77177365 GATGGGCCATATGAACGTGAATT-GGGCT
1 GATGGGCCATATGAATGTAAATTAGGCCT
* *
77177393 GGATGGGCCATATAAATG-AGATTAGGCCT
1 -GATGGGCCATATGAATGTAAATTAGGCCT
* *
77177422 -AGTGGGCCATGTGCATGTA
1 GA-TGGGCCATATGAATGTA
77177441 TGTAGGGGTT
Statistics
Matches: 82, Mismatches: 18, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
27 1 0.01
28 33 0.40
29 48 0.59
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.25
Consensus pattern (29 bp):
GATGGGCCATATGAATGTAAATTAGGCCT
Found at i:77180279 original size:28 final size:30
Alignment explanation
Indices: 77180228--77180285 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
77180218 TATTTCACAT
* *
77180228 TTTAATTCCTCAATATATACTTTT-CTCAA
1 TTTAATCCCTCAATATACACTTTTACTCAA
*
77180257 TTTAATCCCT-AATATACATTTTTACTCAA
1 TTTAATCCCTCAATATACACTTTTACTCAA
77180286 AATCACTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.47
Consensus pattern (30 bp):
TTTAATCCCTCAATATACACTTTTACTCAA
Found at i:77182821 original size:51 final size:51
Alignment explanation
Indices: 77182762--77182903 Score: 207
Period size: 51 Copynumber: 2.8 Consensus size: 51
77182752 ATGCGTACCT
* *
77182762 GATAGCTTTGATCACATGTGTGGTACTACGTGCAGGCCACTTTGTGTAA-AA
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTTTGTG-AAGAA
*
77182813 GATAGCTTTGATCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTTTGTGAAGAA
* *
77182864 GGTAGCTTTGA-CTACAAGTGTGGTACTGTGTGCAGGCCAC
1 GATAGCTTTGATC-ACAAGTGTGGTACTATGTGCAGGCCAC
77182904 CGGGCATCCG
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
50 3 0.04
51 80 0.96
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTTTGTGAAGAA
Found at i:77185975 original size:49 final size:49
Alignment explanation
Indices: 77185901--77186134 Score: 265
Period size: 49 Copynumber: 4.7 Consensus size: 49
77185891 ATCTGGTACG
* *
77185901 CATAGTAGCCTACACTTAGTACTACACATGCGACCAATTAT-GCAATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCG-AATACA
* * **
77185950 CGTAGTAGCCTGCACTTAATACTACACATGTGACCTAACCATCTG-ATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATC-GAATACA
* * * * ** *
77186000 CGTAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCGAATACA
* * *
77186051 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCGAATACA
77186100 CATAGTAGCCTGCACTTAGTACTACACATGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACC
77186135 TCACAATAGA
Statistics
Matches: 156, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
49 74 0.47
50 45 0.29
51 36 0.23
52 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCGAATACA
Found at i:77186127 original size:26 final size:26
Alignment explanation
Indices: 77186051--77186128 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 26
77186041 ATCGGGTACG
77186051 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
* * * *
77186077 CAT-G-CGAC--CAATTA-TCCAGTACA
1 CATAGTAGCCTGCACTTAGT--ACTACA
77186100 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
77186126 CAT
1 CAT
77186129 GTGACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 5 0.14
23 8 0.22
24 3 0.08
25 3 0.08
26 11 0.30
27 5 0.14
28 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (26 bp):
CATAGTAGCCTGCACTTAGTACTACA
Done.